BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus22_contig00030005
         (1514 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|GAU16533.1| hypothetical protein TSUD_167640 [Trifolium subt...   613   0.0  
gb|PNX94522.1| copia-type polyprotein [Trifolium pratense]            595   0.0  
dbj|GAU42405.1| hypothetical protein TSUD_324600 [Trifolium subt...   598   0.0  
gb|PNX96089.1| copia-type polyprotein, partial [Trifolium pratense]   584   0.0  
gb|PNX72392.1| copia-type polyprotein, partial [Trifolium pratense]   563   0.0  
dbj|GAU23361.1| hypothetical protein TSUD_334080 [Trifolium subt...   575   0.0  
gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinen...   568   0.0  
gb|PNX94698.1| copia-type polyprotein [Trifolium pratense]            565   0.0  
dbj|GAU51653.1| hypothetical protein TSUD_414750 [Trifolium subt...   545   0.0  
gb|PNX99782.1| copia-type polyprotein [Trifolium pratense]            546   0.0  
gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinen...   555   0.0  
gb|PNX93789.1| copia-type polyprotein [Trifolium pratense]            554   0.0  
dbj|GAU51028.1| hypothetical protein TSUD_291040 [Trifolium subt...   546   e-180
gb|PNX99755.1| copia-type polyprotein, partial [Trifolium pratense]   545   e-179
dbj|GAU44758.1| hypothetical protein TSUD_246510 [Trifolium subt...   546   e-178
gb|PNY01730.1| copia-type polyprotein, partial [Trifolium pratense]   531   e-178
dbj|GAU13723.1| hypothetical protein TSUD_348270 [Trifolium subt...   538   e-178
gb|PNX96091.1| retrotransposon-related protein [Trifolium pratense]   543   e-177
dbj|GAU37486.1| hypothetical protein TSUD_275380 [Trifolium subt...   545   e-177
dbj|GAU23220.1| hypothetical protein TSUD_172480 [Trifolium subt...   535   e-174

>dbj|GAU16533.1| hypothetical protein TSUD_167640 [Trifolium subterraneum]
          Length = 1103

 Score =  613 bits (1580), Expect = 0.0
 Identities = 305/539 (56%), Positives = 388/539 (71%), Gaps = 35/539 (6%)
 Frame = -1

Query: 1514 LDKDSSKAIWDSMKQKFQGTTKVKRSQLRAAKREFELLGMKDEETVSEYFGRTLAIVNKM 1335
            LDK SSKAIWDSMKQKFQG+TKVKR+QL+A + EFE+L MK++E+VS YFGR L+ VNKM
Sbjct: 84   LDKSSSKAIWDSMKQKFQGSTKVKRAQLQALRGEFEILRMKEDESVSSYFGRVLSTVNKM 143

Query: 1334 KIYGDSVDQSEIVEKVLRSMPEKFNYVIAAIDEGNDVTKMTIDELQGSLLVHEQRMFPQK 1155
            KI G++V+QS +VEK+LRSM  KFNYV+ AI+E N+V  ++IDELQGSLLVHEQ+M P K
Sbjct: 144  KIQGEAVEQSTVVEKILRSMTSKFNYVVCAIEESNNVETLSIDELQGSLLVHEQKMKPLK 203

Query: 1154 EEEQVLKVXXXXXXXXXXXXXXXXXXXXXXXXXSYKDNLECHRCKKLGHFAYECPNGE-- 981
            EE+Q LKV                         + K+N+EC++C K GHF YEC N E  
Sbjct: 204  EEDQALKVTHGDRNSTRGRGRGAKGNQGRGKRIN-KENVECYKCHKFGHFQYECQNSEGG 262

Query: 980  EKAHYAELDEDEEVLLMA----AIESEIERIWYLDSGCSNHMCGEKEWFSTLDTTFRESV 813
              A+YA+ D+ EEVLLMA    +  +   ++WY+DSGCSNHMCG KEWF  LD +FRESV
Sbjct: 263  GYANYADFDDSEEVLLMAHESTSSNNPRAKVWYIDSGCSNHMCGIKEWFHDLDESFRESV 322

Query: 812  KLGDGSRITVEGKGTVKLRVKGMILVVTDVYYIPKLKNNLISLGQLQQKTELSISMHQDL 633
            +LGD S+++V GKG VKL++ G++ ++T VY+IPKLKNNL+SLGQLQ+K  L+  +  + 
Sbjct: 323  RLGDDSQMSVMGKGNVKLQMNGIVQIITGVYFIPKLKNNLLSLGQLQEK-NLTFVIKNNW 381

Query: 632  CRVYHSDKGLIITSRMTKNKLFPVIATAVSSSCLYTAKEDVSYLWHRRYGHLNMKSLKEM 453
            C+VYH DKG+I+ S+M  NKLFP++A A    CL    ED++ LWH RYGHLN+K L+ +
Sbjct: 382  CKVYHRDKGMIMCSQMASNKLFPIMAEA-KQVCLQANIEDITQLWHCRYGHLNIKGLQNL 440

Query: 452  AQKNMVKGLPEIKESERNCNDCMKGKQHRNEFPKSSNWKASSKLELVHSDICGPITPESS 273
             QKNMV GLP+ +ES   C DC++GKQHR   PK+SNWK+S +LEL+HSDICGPITP S+
Sbjct: 441  QQKNMVIGLPKFEESNHVCADCLRGKQHRESIPKTSNWKSSKRLELIHSDICGPITPVSN 500

Query: 272  GKRRYILTFIDDFSRKTWVYFLIEKSAA-----------------------------LSS 180
              +RY+LTFIDD+SRK W Y+L  KS A                              +S
Sbjct: 501  SNKRYVLTFIDDYSRKIWAYYLSNKSDAFECFKKFKCMVEKETSETICCLRTDRGGEFNS 560

Query: 179  NEFNEYCSVNGIKRQLTAAYSPQQNGIAERKNRTLMEMTRSLLAGKSIPKSFWPEAVNW 3
            +EF E+C VNGIKRQLTAAY+PQQNGIAERKNRT+MEM R +LAGKS+PK+FWPEAVNW
Sbjct: 561  DEFKEFCEVNGIKRQLTAAYTPQQNGIAERKNRTIMEMIRCMLAGKSVPKAFWPEAVNW 619


>gb|PNX94522.1| copia-type polyprotein [Trifolium pratense]
          Length = 1172

 Score =  595 bits (1534), Expect = 0.0
 Identities = 298/537 (55%), Positives = 387/537 (72%), Gaps = 33/537 (6%)
 Frame = -1

Query: 1514 LDKDSSKAIWDSMKQKFQGTTKVKRSQLRAAKREFELLGMKDEETVSEYFGRTLAIVNKM 1335
            LDK SSKAIW+SM +KFQG+TKVKR++L+A + EF +L MK+EE+V+++FGR LA VNKM
Sbjct: 84   LDKSSSKAIWESMAKKFQGSTKVKRARLQALRGEFGMLRMKEEESVNDFFGRVLATVNKM 143

Query: 1334 KIYGDSVDQSEIVEKVLRSMPEKFNYVIAAIDEGNDVTKMTIDELQGSLLVHEQRMFPQK 1155
            KI G+++++S +VEK+LRSM EKFNYV+ AI+E N+V  ++IDELQGSLLVHE++M P K
Sbjct: 144  KIQGENMEESIVVEKILRSMTEKFNYVVCAIEESNNVETLSIDELQGSLLVHERKMKPIK 203

Query: 1154 EEEQVLKVXXXXXXXXXXXXXXXXXXXXXXXXXSYKDNLECHRCKKLGHFAYECPNGEEK 975
            +E+Q LKV                         + K+ +EC++C KLGHF YECPN  + 
Sbjct: 204  QEDQALKVTYGDRNAGRGRGRGAKGGQGRGKRIN-KETIECYKCHKLGHFQYECPNVGDY 262

Query: 974  AHYAELDEDEEVLLMAAIESEIE----RIWYLDSGCSNHMCGEKEWFSTLDTTFRESVKL 807
            A+YA   ++EEVLLMA  +S  E    +IWYLDSGC NHMCG KEWF  LD  F+E+V+L
Sbjct: 263  ANYA---DNEEVLLMAFDKSHQESTKKQIWYLDSGCINHMCGVKEWFHDLDMNFKETVRL 319

Query: 806  GDGSRITVEGKGTVKLRVKGMILVVTDVYYIPKLKNNLISLGQLQQKTELSISMHQDLCR 627
             D S+++V GKG VKL++ G   ++TDVYYIP+LKNNL+S+GQLQ K +L+I   ++ C+
Sbjct: 320  RDNSQMSVVGKGNVKLQLNGFTQIITDVYYIPELKNNLLSIGQLQLK-DLTIVFKRNWCK 378

Query: 626  VYHSDKGLIITSRMTKNKLFPVIATAVSSSCLYTAKEDVSYLWHRRYGHLNMKSLKEMAQ 447
            VYH DKG+I++S+M  NKL+P+ A A   +C  T  ED+SYLWH RYGHLN K L+ + Q
Sbjct: 379  VYHQDKGMIMSSQMASNKLYPIFAEA-KVACFQTKSEDISYLWHCRYGHLNFKGLQTLQQ 437

Query: 446  KNMVKGLPEIKESERNCNDCMKGKQHRNEFPKSSNWKASSKLELVHSDICGPITPESSGK 267
            KNMVK LP+I+ES+  C +C+ GKQHR   PK+SN K+S +LELVHSDICGPITP S+  
Sbjct: 438  KNMVKDLPKIEESDHMCTNCLVGKQHRESIPKTSNLKSSKRLELVHSDICGPITPASNSD 497

Query: 266  RRYILTFIDDFSRKTWVYFLIEKSAAL-----------------------------SSNE 174
             RY LTFIDD+SRKTW YFL  KS+AL                             +SNE
Sbjct: 498  NRYFLTFIDDYSRKTWAYFLKNKSSALEYFKKFKNMVEKETGESICCLRTDRGGEFNSNE 557

Query: 173  FNEYCSVNGIKRQLTAAYSPQQNGIAERKNRTLMEMTRSLLAGKSIPKSFWPEAVNW 3
            FN +C VNGIKRQ+TAAY+PQQNGIA+RKNRT+M+M RS+++GK IPK FWPEAVNW
Sbjct: 558  FNNFCEVNGIKRQVTAAYTPQQNGIAKRKNRTIMDMVRSMISGKDIPKVFWPEAVNW 614


>dbj|GAU42405.1| hypothetical protein TSUD_324600 [Trifolium subterraneum]
          Length = 1302

 Score =  598 bits (1543), Expect = 0.0
 Identities = 299/539 (55%), Positives = 383/539 (71%), Gaps = 35/539 (6%)
 Frame = -1

Query: 1514 LDKDSSKAIWDSMKQKFQGTTKVKRSQLRAAKREFELLGMKDEETVSEYFGRTLAIVNKM 1335
            LDK SSKAIWDSMKQKFQG+TKVKR+QL+A + EFE+L MK++E+VS YFGR L+ VNKM
Sbjct: 84   LDKSSSKAIWDSMKQKFQGSTKVKRAQLQALRGEFEILRMKEDESVSSYFGRVLSTVNKM 143

Query: 1334 KIYGDSVDQSEIVEKVLRSMPEKFNYVIAAIDEGNDVTKMTIDELQGSLLVHEQRMFPQK 1155
            KI G++V+QS +VEK+LRSM  KFNYV+ AI+E N+V  ++IDELQGSLLVHEQ+M P  
Sbjct: 144  KIQGEAVEQSTVVEKILRSMTSKFNYVVCAIEESNNVETLSIDELQGSLLVHEQKMKPLN 203

Query: 1154 EEEQVLKVXXXXXXXXXXXXXXXXXXXXXXXXXSYKDNLECHRCKKLGHFAYECPNGE-- 981
            EE+Q LK                          + K+N+EC++C K GHF YEC N E  
Sbjct: 204  EEDQALKATHGDRNSTRGRGRGAKGNQGRGKRIN-KENVECYKCHKFGHFQYECQNSEGG 262

Query: 980  EKAHYAELDEDEEVLLMA----AIESEIERIWYLDSGCSNHMCGEKEWFSTLDTTFRESV 813
              A+YA+ D+ EEVLLMA    +  +   ++WY+DSGC NHMCG KE F  LD +FRESV
Sbjct: 263  GYANYADFDDSEEVLLMAHESTSSNNPRAKVWYIDSGCRNHMCGIKERFHDLDESFRESV 322

Query: 812  KLGDGSRITVEGKGTVKLRVKGMILVVTDVYYIPKLKNNLISLGQLQQKTELSISMHQDL 633
            +LGD S+++V  KG VKL + G++ ++T V++IPKLKNNL+SLGQ Q+K+ L+  +  + 
Sbjct: 323  RLGDDSQMSVMEKGNVKLHINGIVQIITGVHFIPKLKNNLLSLGQFQEKS-LTFVIKNNW 381

Query: 632  CRVYHSDKGLIITSRMTKNKLFPVIATAVSSSCLYTAKEDVSYLWHRRYGHLNMKSLKEM 453
            C+VYH DKG+I+ S+M  NKLFP++A A    CL    ED++ LWH RYGHLN+K L+ +
Sbjct: 382  CKVYHRDKGMIMCSQMASNKLFPIMAEA-KQVCLQANTEDITQLWHCRYGHLNIKGLQNL 440

Query: 452  AQKNMVKGLPEIKESERNCNDCMKGKQHRNEFPKSSNWKASSKLELVHSDICGPITPESS 273
             QKNMV GLP+ +ES   C DC++GKQHR   PK+SNWK+S +LEL+HSDICGPITP S+
Sbjct: 441  QQKNMVIGLPKFEESNHVCADCLRGKQHRESIPKTSNWKSSKRLELIHSDICGPITPVSN 500

Query: 272  GKRRYILTFIDDFSRKTWVYFLIEKSAA-----------------------------LSS 180
              +RY+LTFIDD+SRK WVY+L  KS A                              +S
Sbjct: 501  SNKRYVLTFIDDYSRKIWVYYLSNKSDAFECFKKFKCMVEKETSETICCLRTDRGGEFNS 560

Query: 179  NEFNEYCSVNGIKRQLTAAYSPQQNGIAERKNRTLMEMTRSLLAGKSIPKSFWPEAVNW 3
            +EF E+C VNGIKRQLTAAY+PQQNGIAERKNRT+MEM R +LAGKS+PK+FWPEAVNW
Sbjct: 561  DEFKEFCEVNGIKRQLTAAYTPQQNGIAERKNRTIMEMIRCMLAGKSVPKAFWPEAVNW 619


>gb|PNX96089.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 1062

 Score =  584 bits (1505), Expect = 0.0
 Identities = 288/534 (53%), Positives = 377/534 (70%), Gaps = 32/534 (5%)
 Frame = -1

Query: 1508 KDSSKAIWDSMKQKFQGTTKVKRSQLRAAKREFELLGMKDEETVSEYFGRTLAIVNKMKI 1329
            KDS+K IWDSMKQK++G+ KVKR+ L+A  +E ELL MKD ETV+EYF RTL+I+NKMKI
Sbjct: 114  KDSAKGIWDSMKQKYRGSNKVKRAHLQALCKELELLEMKDGETVNEYFARTLSIINKMKI 173

Query: 1328 YGDSVDQSEIVEKVLRSMPEKFNYVIAAIDEGNDVTKMTIDELQGSLLVHEQRMFPQKEE 1149
            +G+ V+   IVEK+LRSM  KFNYV+ AI+E NDVT +++DELQ SL+VHEQRM  Q+EE
Sbjct: 174  HGERVEPVTIVEKILRSMTPKFNYVVCAIEESNDVTALSVDELQSSLIVHEQRMKGQREE 233

Query: 1148 EQVLKVXXXXXXXXXXXXXXXXXXXXXXXXXSY-KDNLECHRCKKLGHFAYECPNGEEKA 972
            +Q+LKV                         S+ KDN+EC+ C KLGHF  +CP  +EKA
Sbjct: 234  DQILKVINAGRTNNRGRGRGGFRGGRGRGRQSFNKDNIECYHCHKLGHFQSDCPAWDEKA 293

Query: 971  HYAELDEDEEVLLMAAIE--SEIERIWYLDSGCSNHMCGEKEWFSTLDTTFRESVKLGDG 798
            +YAE DE EE+LLMA  E  S  +++W+LDSGC NHMCG K+WF  LD  FR SVKLGD 
Sbjct: 294  NYAEFDEGEEMLLMAHSEKGSYDKKVWFLDSGCRNHMCGTKDWFFNLDEQFRISVKLGDN 353

Query: 797  SRITVEGKGTVKLRVKGMILVVTDVYYIPKLKNNLISLGQLQQKTELSISMHQDLCRVYH 618
            SR+ V GKG VKLR+ G+  V+T+VYYIP+LKNNL+S+GQLQ+K  L++   +D+CRVYH
Sbjct: 354  SRMMVVGKGNVKLRIGGITQVITNVYYIPELKNNLLSIGQLQEKG-LTVVFKEDMCRVYH 412

Query: 617  SDKGLIITSRMTKNKLFPVIATAVSSSCLYTAKEDVSYLWHRRYGHLNMKSLKEMAQKNM 438
             ++G+I+  +MT N+++ ++   V  +C     EDV+YLWH RYG+L+ K LK + QKNM
Sbjct: 413  QERGVIMQCKMTANRMYVIMVDVVIPTCFKVTNEDVTYLWHCRYGYLSQKGLKILEQKNM 472

Query: 437  VKGLPEIKESERNCNDCMKGKQHRNEFPKSSNWKASSKLELVHSDICGPITPESSGKRRY 258
            V+GLP++++S   C+DCM GKQHR  F K S  +A+ +L+L+H+D+ GPI PES+  +RY
Sbjct: 473  VRGLPKLQDSSNVCSDCMIGKQHREPFLKVSTRRATKRLQLIHADVFGPIKPESNSNKRY 532

Query: 257  ILTFIDDFSRKTWVYFLIEKSAAL-----------------------------SSNEFNE 165
             LTFIDDFSRKTWVYFL EKS+ L                             +S +FN 
Sbjct: 533  FLTFIDDFSRKTWVYFLSEKSSVLEMFKKFKAMVEKETSDAICCLRTDRGGEFTSTDFNT 592

Query: 164  YCSVNGIKRQLTAAYSPQQNGIAERKNRTLMEMTRSLLAGKSIPKSFWPEAVNW 3
            +CS++GIKRQLT AY+P QNG+ ERKNRT+M M RS+L+GK IPK FW EAVNW
Sbjct: 593  FCSLHGIKRQLTVAYTPHQNGVVERKNRTIMNMVRSMLSGKGIPKEFWAEAVNW 646


>gb|PNX72392.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 886

 Score =  563 bits (1450), Expect = 0.0
 Identities = 279/539 (51%), Positives = 369/539 (68%), Gaps = 35/539 (6%)
 Frame = -1

Query: 1514 LDKDSSKAIWDSMKQKFQGTTKVKRSQLRAAKREFELLGMKDEETVSEYFGRTLAIVNKM 1335
            L++++++ IW+SM++K+QG+T+VKR+QL+  +REFE+L MKD E+V EYF RTL I NK+
Sbjct: 84   LERNTARDIWESMRRKYQGSTRVKRAQLQTLRREFEVLTMKDNESVEEYFARTLTIANKI 143

Query: 1334 KIYGDSVDQSEIVEKVLRSMPEKFNYVIAAIDEGNDVTKMTIDELQGSLLVHEQRMFPQ- 1158
              +G+++ Q+ ++EKVLRSM  KFNYV+ AI+E +DVT M+IDE+Q SL+VHE+RM    
Sbjct: 144  TAHGENLTQASVIEKVLRSMSSKFNYVVCAIEESHDVTTMSIDEIQSSLIVHEKRMKANL 203

Query: 1157 -KEEEQVLKVXXXXXXXXXXXXXXXXXXXXXXXXXSYKDNLECHRCKKLGHFAYECPNGE 981
             KEEEQ LKV                           K+N+EC RC KLGH+  ECPN E
Sbjct: 204  DKEEEQALKVSNYGRGANRGRGGRSSSRGRGRGRQISKENIECFRCHKLGHYQSECPNWE 263

Query: 980  E-KAHYAELDEDEEVLLMAAIESEIER---IWYLDSGCSNHMCGEKEWFSTLDTTFRESV 813
            +  A++AE D+ EE+LLMA    E      +WYLDSGCSNHM G KEW    D +FRESV
Sbjct: 264  DANANFAEFDDKEEILLMAQGTDESNNKKVVWYLDSGCSNHMVGNKEWLFDFDDSFRESV 323

Query: 812  KLGDGSRITVEGKGTVKLRVKGMILVVTDVYYIPKLKNNLISLGQLQQKTELSISMHQDL 633
            KLGD SR+ V GKG +KL + GM+ V+TDVY++P LKNNL+S+GQLQQK  ++I   +D 
Sbjct: 324  KLGDDSRMAVMGKGNLKLNINGMVQVITDVYFLPGLKNNLLSIGQLQQKN-VTIIFEKDQ 382

Query: 632  CRVYHSDKGLIITSRMTKNKLFPVIATAVSSSCLYTAKEDVSYLWHRRYGHLNMKSLKEM 453
            C+V+H   GLIITS M+ N++F + A+ +S  CL  +K+  S+LWH RY HL+ K L  +
Sbjct: 383  CKVFHDKWGLIITSDMSANRMFIIQASIISPMCLKISKDSQSHLWHCRYAHLSFKGLNTL 442

Query: 452  AQKNMVKGLPEIKESERNCNDCMKGKQHRNEFPKSSNWKASSKLELVHSDICGPITPESS 273
             +K+MVKGLP ++E++  C+DC  GKQ R   PKS+NW+AS KL+LVHSDICGPI P S+
Sbjct: 443  VKKDMVKGLPTLQETDEVCSDCATGKQSREAIPKSNNWRASEKLQLVHSDICGPINPASN 502

Query: 272  GKRRYILTFIDDFSRKTWVYFLIEKSAA-----------------------------LSS 180
            G  RY +TF DDFSRKTW Y L  KS A                              +S
Sbjct: 503  GGSRYFITFTDDFSRKTWTYPLAAKSNAFEIFKKFKALVEKESNCNIQTLRTDRGGEFTS 562

Query: 179  NEFNEYCSVNGIKRQLTAAYSPQQNGIAERKNRTLMEMTRSLLAGKSIPKSFWPEAVNW 3
            +EFNE+CS NGIKRQLTAAY+PQQNG++ERKNRTL+ M RS+L G+++PK FWPEAV W
Sbjct: 563  HEFNEFCSTNGIKRQLTAAYTPQQNGVSERKNRTLLNMVRSMLNGRNVPKRFWPEAVIW 621


>dbj|GAU23361.1| hypothetical protein TSUD_334080 [Trifolium subterraneum]
          Length = 1322

 Score =  575 bits (1483), Expect = 0.0
 Identities = 285/539 (52%), Positives = 376/539 (69%), Gaps = 35/539 (6%)
 Frame = -1

Query: 1514 LDKDSSKAIWDSMKQKFQGTTKVKRSQLRAAKREFELLGMKDEETVSEYFGRTLAIVNKM 1335
            L K++SK IWDSM+ K+QG+ KVKR+QL+A +REFE+L MKD E+VS+YF RTLAI N+M
Sbjct: 80   LTKETSKQIWDSMRSKYQGSNKVKRAQLQALRREFEVLAMKDGESVSDYFARTLAIANRM 139

Query: 1334 KIYGDSVDQSEIVEKVLRSMPEKFNYVIAAIDEGNDVTKMTIDELQGSLLVHEQRMFPQ- 1158
              +G++V Q  IVEK+LRS+  KFNYV+ +I+E NDVT+++IDELQ SLLV EQR+  Q 
Sbjct: 140  TAHGETVQQLVIVEKILRSLTPKFNYVVCSIEEANDVTQLSIDELQSSLLVQEQRLQAQS 199

Query: 1157 -KEEEQVLKVXXXXXXXXXXXXXXXXXXXXXXXXXSYKDNLECHRCKKLGHFAYECPNGE 981
             K+EEQ LKV                           K+N+EC+RC KLGH+ +ECP  E
Sbjct: 200  TKDEEQALKVASYGRGGGTRGRGRGGGARGRGRGRVNKENIECYRCHKLGHYQHECPTWE 259

Query: 980  EK-AHYAELDEDEEVLLMA--AIESEI-ERIWYLDSGCSNHMCGEKEWFSTLDTTFRESV 813
            EK A+YA  D  EE+LLMA   IE++  + +W+LDSGCSNHM G +EW    D   RESV
Sbjct: 260  EKDANYAAYDSHEEILLMAKHGIETDARDEVWFLDSGCSNHMVGTREWLFDFDDNIRESV 319

Query: 812  KLGDGSRITVEGKGTVKLRVKGMILVVTDVYYIPKLKNNLISLGQLQQKTELSISMHQDL 633
            KLGD SR+ + GKG +KL + G+  V++DVYYIP LKNNL+S+GQLQQK +L+I   QD 
Sbjct: 320  KLGDDSRMQILGKGNLKLCIGGITQVISDVYYIPGLKNNLLSIGQLQQK-DLTIVFKQDF 378

Query: 632  CRVYHSDKGLIITSRMTKNKLFPVIATAVSSSCLYTAKEDVSYLWHRRYGHLNMKSLKEM 453
            C+VYH  +GLI+ ++M+ N+++ + A  +   CL T K D + LWH RYGHL+ K L  +
Sbjct: 379  CKVYHPQRGLIMATKMSANRMYIIYAPVIIPMCLKTVKMDNNELWHCRYGHLSFKGLNTL 438

Query: 452  AQKNMVKGLPEIKESERNCNDCMKGKQHRNEFPKSSNWKASSKLELVHSDICGPITPESS 273
             +K+MV+GLP+++E+  NC +CM GKQHR   PKSSNW+AS KLELVHSDICGPITP+S+
Sbjct: 439  VKKDMVRGLPQLQETTENCTNCMTGKQHREAIPKSSNWRASKKLELVHSDICGPITPQSN 498

Query: 272  GKRRYILTFIDDFSRKTWVYFLIEKSAA-----------------------------LSS 180
            G  RY +TF DDFSRKTW Y L +K++A                              +S
Sbjct: 499  GGIRYFMTFTDDFSRKTWTYLLSDKASAFDVFKKFKVLVEKESNCQIMCLRTDRGGEFTS 558

Query: 179  NEFNEYCSVNGIKRQLTAAYSPQQNGIAERKNRTLMEMTRSLLAGKSIPKSFWPEAVNW 3
            N FNE+CS +GIKRQLT AY+PQQNG++ERKNRTL+ M RS++AG+++PKSFWPEA+ W
Sbjct: 559  NNFNEFCSNHGIKRQLTTAYTPQQNGVSERKNRTLLNMIRSMMAGRNVPKSFWPEALKW 617


>gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1302

 Score =  568 bits (1464), Expect = 0.0
 Identities = 283/540 (52%), Positives = 375/540 (69%), Gaps = 36/540 (6%)
 Frame = -1

Query: 1514 LDKDSSKAIWDSMKQKFQGTTKVKRSQLRAAKREFELLGMKDEETVSEYFGRTLAIVNKM 1335
            L+K+++K IWDSM+QK+QG+TKVKR+QL+A +REFE+L MK+ ETV EYF RTL I NKM
Sbjct: 87   LNKETAKHIWDSMRQKYQGSTKVKRAQLQALRREFEVLQMKEGETVDEYFARTLTIANKM 146

Query: 1334 KIYGDSVDQSEIVEKVLRSMPEKFNYVIAAIDEGNDVTKMTIDELQGSLLVHEQRMFPQK 1155
            K + +++ +  IVEK+LRSM  KF+YV+ +I+E N++T MTIDELQ SLLVHEQRM    
Sbjct: 147  KAHSENMAELVIVEKILRSMTAKFDYVVCSIEESNNLTTMTIDELQSSLLVHEQRMRGHG 206

Query: 1154 EEEQVLKVXXXXXXXXXXXXXXXXXXXXXXXXXSY--KDNLECHRCKKLGHFAYECPNGE 981
             EEQ LKV                             K  +EC++C KLGHF YECP  E
Sbjct: 207  GEEQALKVTYEDRTSGRGRGRGGFRGRGRGRSRQQFNKALVECYKCHKLGHFQYECPEWE 266

Query: 980  EKAHYAELDEDEEVLLMAAIE---SEIERIWYLDSGCSNHMCGEKEWFSTLDTTFRESVK 810
            + A+YAELDE EE+LLMA +E   S++E +W+LDSGCSNHM G K+WF  L+  FR+SVK
Sbjct: 267  KGANYAELDEKEEMLLMAYVELNNSKMEEVWFLDSGCSNHMSGNKKWFIDLNEQFRQSVK 326

Query: 809  LGDGSRITVEGKGTVKLRVKGMILVVTDVYYIPKLKNNLISLGQLQQKTELSISMHQDLC 630
            LG+ S++ V GKG V+L+  G+  V TDVYYIP+LKNNL+S+GQLQ+K  ++I +   +C
Sbjct: 327  LGNNSKMAVMGKGNVRLQANGVTQVFTDVYYIPELKNNLLSIGQLQEKG-VAILIQNGMC 385

Query: 629  RVYHSDKGLIITSRMTKNKLFPVIATAV--SSSCLYTAKEDVSYLWHRRYGHLNMKSLKE 456
            ++YH  KGLI+ ++M+ N++F ++A  +  +S+C  T  ED ++LWH RYGHL+ K LK 
Sbjct: 386  QIYHPRKGLIMQTKMSANRMFVILANMLPQASACFQTVSEDNTHLWHCRYGHLSFKGLKT 445

Query: 455  MAQKNMVKGLPEIKESERNCNDCMKGKQHRNEFPKSSNWKASSKLELVHSDICGPITPES 276
            +  +NMVKGLP+ K   + C DCM GKQHR   PK S W+AS +L+L+HSDICGPI P S
Sbjct: 446  LQYRNMVKGLPDFKMPSKLCKDCMVGKQHRESIPKKSMWRASHRLQLIHSDICGPIKPLS 505

Query: 275  SGKRRYILTFIDDFSRKTWVYFLIEKSAALS----------------------------- 183
            + ++RY+++FIDD+SRKTWVYFL EKS A +                             
Sbjct: 506  NNRKRYLISFIDDYSRKTWVYFLNEKSQAFTTFKSFKCLVEKETGDYIQCLRTDRGGEFT 565

Query: 182  SNEFNEYCSVNGIKRQLTAAYSPQQNGIAERKNRTLMEMTRSLLAGKSIPKSFWPEAVNW 3
            S EFN +CS +GI RQLTAAY+PQQNG+AERKNRT+M M RS+L+ K +PK FWPEAVNW
Sbjct: 566  SQEFNTFCSTHGISRQLTAAYTPQQNGVAERKNRTIMNMVRSMLSEKQVPKVFWPEAVNW 625


>gb|PNX94698.1| copia-type polyprotein [Trifolium pratense]
          Length = 1324

 Score =  565 bits (1455), Expect = 0.0
 Identities = 285/541 (52%), Positives = 372/541 (68%), Gaps = 37/541 (6%)
 Frame = -1

Query: 1514 LDKDSSKAIWDSMKQKFQGTTKVKRSQLRAAKREFELLGMKDEETVSEYFGRTLAIVNKM 1335
            + +D+SK IWDSMK+K+QG++KVKR+QL+A +REFE+L MK+ ETV E+F RTLAI NKM
Sbjct: 85   ITRDTSKEIWDSMKRKYQGSSKVKRAQLQALRREFEVLCMKETETVDEFFARTLAIANKM 144

Query: 1334 KIYGDSVDQSEIVEKVLRSMPEKFNYVIAAIDEGNDVTKMTIDELQGSLLVHEQRMFPQ- 1158
               G+ ++Q  IVEKVLRSM  +FNYV+ +I+E NDVT++TID LQ SLLVHEQRM  Q 
Sbjct: 145  TAQGEKLEQLHIVEKVLRSMTPRFNYVVCSIEESNDVTELTIDALQSSLLVHEQRMKAQK 204

Query: 1157 -KEEEQVLKV--XXXXXXXXXXXXXXXXXXXXXXXXXSYKDNLECHRCKKLGHFAYECPN 987
             KEEEQ LK+                             K+ +EC +C KLGH+  ECP 
Sbjct: 205  DKEEEQALKITSNGRGNGGNGGSRGRGRGGRGRGRGRQNKELVECFKCHKLGHYRNECPT 264

Query: 986  GEE-KAHYAELDEDEEVLLMAAIESEI---ERIWYLDSGCSNHMCGEKEWFSTLDTTFRE 819
             EE  A+YAE DE++E+LLMA         E +W+LDSGCSNHM G KEW    D +FRE
Sbjct: 265  WEEYDANYAEFDEEQELLLMARDNVSTHAKEEVWFLDSGCSNHMIGTKEWLFDYDDSFRE 324

Query: 818  SVKLGDGSRITVEGKGTVKLRVKGMILVVTDVYYIPKLKNNLISLGQLQQKTELSISMHQ 639
            SVKLGD SR++V G+G +KL++ G+  V+T+VY++P LKNNL+S+GQLQQK +++I    
Sbjct: 325  SVKLGDDSRMSVMGRGNLKLQICGITQVITNVYFLPGLKNNLLSIGQLQQK-DVTIVFKD 383

Query: 638  DLCRVYHSDKGLIITSRMTKNKLFPVIATAVSSSCLYTAKEDVSYLWHRRYGHLNMKSLK 459
            DLC+V+H  +GLI+T+RMT N+++ + A  +   CL T K+  S+LWH RYGHL+ K L 
Sbjct: 384  DLCKVFHEQRGLIMTTRMTANRMYVISAPVILPMCLKTEKQVNSHLWHCRYGHLSFKGLN 443

Query: 458  EMAQKNMVKGLPEIKESERNCNDCMKGKQHRNEFPKSSNWKASSKLELVHSDICGPITPE 279
             + ++NMVKGLP+++E E NC+DCM GKQHR+  PK +NW+A+ KLELVHSDICGPI P 
Sbjct: 444  TLVKRNMVKGLPQLQEIETNCSDCMIGKQHRDSIPKQANWRATKKLELVHSDICGPINPT 503

Query: 278  SSGKRRYILTFIDDFSRKTWVYFLIEKS---------AALSSNE---------------- 174
            S+G  RY +T  DD+SRKTW Y + EKS          AL  NE                
Sbjct: 504  SNGGNRYFMTLTDDYSRKTWTYVMSEKSNAFNVFKTFKALVENESGYKIVCLRTDRGGEF 563

Query: 173  ----FNEYCSVNGIKRQLTAAYSPQQNGIAERKNRTLMEMTRSLLAGKSIPKSFWPEAVN 6
                FN +CS NGIKRQLT AY+PQQNG++ERKNRTL+ M RS+LAG+++PK FWPEAV 
Sbjct: 564  TSEIFNNFCSENGIKRQLTTAYTPQQNGVSERKNRTLLNMVRSMLAGRNVPKKFWPEAVK 623

Query: 5    W 3
            W
Sbjct: 624  W 624


>dbj|GAU51653.1| hypothetical protein TSUD_414750 [Trifolium subterraneum]
          Length = 847

 Score =  545 bits (1403), Expect = 0.0
 Identities = 274/539 (50%), Positives = 361/539 (66%), Gaps = 35/539 (6%)
 Frame = -1

Query: 1514 LDKDSSKAIWDSMKQKFQGTTKVKRSQLRAAKREFELLGMKDEETVSEYFGRTLAIVNKM 1335
            LD+D++KAIWDSM+ K+QG+TKVKR+QL+A +++FE+L MK+ E+V EYF RTLAI N+M
Sbjct: 85   LDRDTAKAIWDSMRSKYQGSTKVKRAQLQALRKDFEVLAMKEGESVDEYFARTLAIANRM 144

Query: 1334 KIYGDSVDQSEIVEKVLRSMPEKFNYVIAAIDEGNDVTKMTIDELQGSLLVHEQRMFPQ- 1158
              YG+ ++Q  IVE  L S+  KFNYV+ +I++  DVT + ID LQ SLLV EQR+  Q 
Sbjct: 145  TAYGERMEQVVIVEIFLCSLLPKFNYVVCSIEQSTDVTTLGIDALQSSLLVQEQRLKSQS 204

Query: 1157 -KEEEQVLKVXXXXXXXXXXXXXXXXXXXXXXXXXSYKDNLECHRCKKLGHFAYECPN-G 984
             KEEEQ LKV                         S K+N+EC++C K+GH+  +CP+ G
Sbjct: 205  EKEEEQALKVSSAGRGNNNRGRGRNSSRGRGRGRVS-KENVECYKCHKMGHYQSDCPSWG 263

Query: 983  EEKAHYAELDEDEEVLLMAAIESEI---ERIWYLDSGCSNHMCGEKEWFSTLDTTFRESV 813
            E  A+YA  D++EE+LLMA  E E    + +W+LDSGCSNHM G KEW    D   RE V
Sbjct: 264  ENDANYAVFDQNEEILLMAQHEVETNARDEVWFLDSGCSNHMIGTKEWLYDFDENIRECV 323

Query: 812  KLGDGSRITVEGKGTVKLRVKGMILVVTDVYYIPKLKNNLISLGQLQQKTELSISMHQDL 633
            KLGD SR+ ++GKG +KL + G+  V+TDVYYIP LKNNL+S+GQLQQK  L+I   +DL
Sbjct: 324  KLGDDSRMQIKGKGNLKLCIGGLTQVITDVYYIPGLKNNLLSIGQLQQKN-LTIVFKKDL 382

Query: 632  CRVYHSDKGLIITSRMTKNKLFPVIATAVSSSCLYTAKEDVSYLWHRRYGHLNMKSLKEM 453
            C+VYH +KGLI++++M+ N+++ + A  +   C  T K D + LWH RYGHL+ K L  +
Sbjct: 383  CKVYHEEKGLIMSTKMSSNRMYVIFAPIIVPMCFKTVKMDNNELWHCRYGHLSFKGLNTL 442

Query: 452  AQKNMVKGLPEIKESERNCNDCMKGKQHRNEFPKSSNWKASSKLELVHSDICGPITPESS 273
             +K MVKGLP +++ E     C+  KQHR   PKSSNW+A+  LELVHSDICGPITP+S+
Sbjct: 443  VKKEMVKGLPHLQDMEDTFVSCLTSKQHREAIPKSSNWRATKLLELVHSDICGPITPQSN 502

Query: 272  GKRRYILTFIDDFSRKTWVYFLIEKSAAL-----------------------------SS 180
            G  RY +TF DDFSRKTW Y L  K+ A                              +S
Sbjct: 503  GGNRYFITFTDDFSRKTWTYLLANKACAFDEFKKFKALVEKESNTQIMCLRTDRGGEFTS 562

Query: 179  NEFNEYCSVNGIKRQLTAAYSPQQNGIAERKNRTLMEMTRSLLAGKSIPKSFWPEAVNW 3
            N FNEYCS +GIKRQLT AY+PQQNG++ERKNRTL+ M RS+L GK +PK+FWPEA+ W
Sbjct: 563  NAFNEYCSAHGIKRQLTTAYTPQQNGVSERKNRTLLNMVRSMLDGKCVPKTFWPEALKW 621


>gb|PNX99782.1| copia-type polyprotein [Trifolium pratense]
          Length = 912

 Score =  546 bits (1406), Expect = 0.0
 Identities = 265/536 (49%), Positives = 369/536 (68%), Gaps = 32/536 (5%)
 Frame = -1

Query: 1514 LDKDSSKAIWDSMKQKFQGTTKVKRSQLRAAKREFELLGMKDEETVSEYFGRTLAIVNKM 1335
            L+++++K IWD+M++K+QG+TKVKR+QL+  +REFE+L M ++E+V+EYF RTLAI N+M
Sbjct: 85   LNRETAKDIWDAMRRKYQGSTKVKRAQLQTLRREFEILAMGEDESVNEYFARTLAIANRM 144

Query: 1334 KIYGDSVDQSEIVEKVLRSMPEKFNYVIAAIDEGNDVTKMTIDELQGSLLVHEQRMFPQK 1155
              +G+ ++Q  +VEK+LRSM EKFNYV+ +I+E NDVT ++IDELQ SLLVHEQRM  QK
Sbjct: 145  TAHGERIEQVMVVEKILRSMHEKFNYVVCSIEESNDVTTLSIDELQSSLLVHEQRMRGQK 204

Query: 1154 EEEQVLKVXXXXXXXXXXXXXXXXXXXXXXXXXSYKDNLECHRCKKLGHFAYECPNGEEK 975
            + ++                               K+++EC +C KLGH+  ECP+ E  
Sbjct: 205  DYQKDHSDDQALKMSNSGRGGGRSASRGLGRGWQSKESIECFKCHKLGHYRNECPDWE-- 262

Query: 974  AHYAELDEDEEVLLMA---AIESEIERIWYLDSGCSNHMCGEKEWFSTLDTTFRESVKLG 804
            A+YAE  E+EE+LLMA     E  I+ +WY+DSGCSNHM G KEWF   D  FRESVKLG
Sbjct: 263  ANYAEHREEEEMLLMAYSYTKEDFIKGMWYIDSGCSNHMTGTKEWFFDFDDKFRESVKLG 322

Query: 803  DGSRITVEGKGTVKLRVKGMILVVTDVYYIPKLKNNLISLGQLQQKTELSISMHQDLCRV 624
            + S++TV G+G VKL + G I V+T+VYY+P L NNL+S+GQLQQ+  L+     ++C++
Sbjct: 323  NDSKMTVMGRGNVKLNMDGKIHVITNVYYLPGLSNNLLSVGQLQQRG-LTTVFKNNMCQL 381

Query: 623  YHSDKGLIITSRMTKNKLFPVIATAVSSSCLYTAKEDVSYLWHRRYGHLNMKSLKEMAQK 444
            +H +KGLI+T++MT NK++ V A+ +  +CL     + + LWH+RY HL+ + LK +  K
Sbjct: 382  FHEEKGLILTTKMTFNKMYIVKASMILPNCLQATALEETTLWHQRYAHLSFQGLKTLITK 441

Query: 443  NMVKGLPEIKESERNCNDCMKGKQHRNEFPKSSNWKASSKLELVHSDICGPITPESSGKR 264
             MVKGLP +KES   C DC+ GKQHR+  PK +NW+AS KLELVHSDICGPI P+S+G  
Sbjct: 442  QMVKGLPNLKESGDKCTDCLVGKQHRSSIPKEANWRASKKLELVHSDICGPINPQSNGGN 501

Query: 263  RYILTFIDDFSRKTWVYFLIEKSAAL-----------------------------SSNEF 171
            RY +TFIDDF++KTW+YFL +KS+A                              +SNEF
Sbjct: 502  RYFITFIDDFTKKTWIYFLQKKSSAFDVFKKFKSLVENESSCLIQCLRTDRSGEYTSNEF 561

Query: 170  NEYCSVNGIKRQLTAAYSPQQNGIAERKNRTLMEMTRSLLAGKSIPKSFWPEAVNW 3
            NE+C  +G+KRQLT  Y+PQQNG++ERKNRT++ M RS+++ +S+PK FWPEA  W
Sbjct: 562  NEFCKSHGVKRQLTTVYTPQQNGVSERKNRTVLNMVRSMISARSVPKKFWPEAAKW 617


>gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1316

 Score =  555 bits (1429), Expect = 0.0
 Identities = 277/542 (51%), Positives = 373/542 (68%), Gaps = 38/542 (7%)
 Frame = -1

Query: 1514 LDKDSSKAIWDSMKQKFQGTTKVKRSQLRAAKREFELLGMKDEETVSEYFGRTLAIVNKM 1335
            L+K+++K IWDSM+QK+QG+TKVKR+QL+A +REFE+L MKD E V EYF RTL I NKM
Sbjct: 87   LNKETAKHIWDSMRQKYQGSTKVKRAQLQALRREFEVLQMKDGEIVDEYFARTLTIANKM 146

Query: 1334 KIYGDSVDQSEIVEKVLRSMPEKFNYVIAAIDEGNDVTKMTIDELQGSLLVHEQRMFPQK 1155
            K +G+++ +  IVEK+LRSM  KF+Y++ +I+E N++T MTI+ELQ SLLVHEQRM    
Sbjct: 147  KAHGENMIELVIVEKILRSMTAKFDYMVCSIEESNNLTTMTINELQSSLLVHEQRMRSHG 206

Query: 1154 EEEQVLKVXXXXXXXXXXXXXXXXXXXXXXXXXSY----KDNLECHRCKKLGHFAYECPN 987
             EEQ L V                               K  +EC++C KLGHF +E P 
Sbjct: 207  GEEQALNVTYEDRTGGRGRGRGRGGFRGRGRGRGRQQFDKALVECYKCHKLGHFQHEFPE 266

Query: 986  GEEKAHYAELDEDEEVLLMAAIE---SEIERIWYLDSGCSNHMCGEKEWFSTLDTTFRES 816
             E+ A+YAE DE+EE+LLMA +E   S++E +W+LDSGCSNHM G K+WF+ L+  FR+S
Sbjct: 267  WEKGANYAEHDENEEMLLMAYVELNNSKMEEVWFLDSGCSNHMSGNKQWFTDLNEQFRQS 326

Query: 815  VKLGDGSRITVEGKGTVKLRVKGMILVVTDVYYIPKLKNNLISLGQLQQKTELSISMHQD 636
            VKLG+ S++ V GKG V+L+  G+  V TDVYYIP+LKNNL+S+GQLQ+K  ++I +   
Sbjct: 327  VKLGNNSKMAVMGKGNVRLQANGVTQVFTDVYYIPELKNNLLSIGQLQEKG-VTILIRNG 385

Query: 635  LCRVYHSDKGLIITSRMTKNKLFPVIATAV--SSSCLYTAKEDVSYLWHRRYGHLNMKSL 462
            +C++YH  KGLI+ ++M+ N++F + A  +  +S+C  T  ED ++LWH RYGHL+ K L
Sbjct: 386  MCQIYHPRKGLIMQTKMSANRMFVIRANMLPQASACFQTVSEDNTHLWHCRYGHLSFKGL 445

Query: 461  KEMAQKNMVKGLPEIKESERNCNDCMKGKQHRNEFPKSSNWKASSKLELVHSDICGPITP 282
            + +  + MVKGLP+ K S + C DCM GKQHR   PK S W+AS +L+L+HSDICGPI P
Sbjct: 446  RSLQYRKMVKGLPDFKMSSKLCKDCMVGKQHRESIPKKSMWRASHRLQLIHSDICGPIKP 505

Query: 281  ESSGKRRYILTFIDDFSRKTWVYFLIEKSAALS--------------------------- 183
             S+ ++RY+++FIDD+SRKTWVYFL EKS A +                           
Sbjct: 506  LSNSRKRYLISFIDDYSRKTWVYFLYEKSQAFTTFKSFKCLVEKETGDYIQCLRTDRGGE 565

Query: 182  --SNEFNEYCSVNGIKRQLTAAYSPQQNGIAERKNRTLMEMTRSLLAGKSIPKSFWPEAV 9
              S EFN +CS +GI RQLTAAY+PQQNG+AERKNRT+M M RS+L+ K +PK FWPEAV
Sbjct: 566  FTSQEFNTFCSTHGISRQLTAAYTPQQNGVAERKNRTIMNMVRSMLSEKQVPKVFWPEAV 625

Query: 8    NW 3
            NW
Sbjct: 626  NW 627


>gb|PNX93789.1| copia-type polyprotein [Trifolium pratense]
          Length = 1347

 Score =  554 bits (1428), Expect = 0.0
 Identities = 279/541 (51%), Positives = 371/541 (68%), Gaps = 37/541 (6%)
 Frame = -1

Query: 1514 LDKDSSKAIWDSMKQKFQGTTKVKRSQLRAAKREFELLGMKDEETVSEYFGRTLAIVNKM 1335
            LDK++SK+IW+SMKQKFQG+ +VKR+QL+A +++FE+L MK+ ETV+ YF RTL I NKM
Sbjct: 89   LDKETSKSIWESMKQKFQGSNRVKRAQLQALRKDFEILHMKEGETVNAYFSRTLTIANKM 148

Query: 1334 KIYGDSVDQSEIVEKVLRSMPEKFNYVIAAIDEGNDVTKMTIDELQGSLLVHEQRMFPQK 1155
            K +G+S+ Q+ I EK+LRSM  KF+YV+ +I+E N++  MTIDELQ SLLVHEQRM   +
Sbjct: 149  KAHGESMSQTIITEKILRSMISKFDYVVCSIEESNNLDTMTIDELQSSLLVHEQRMTSHR 208

Query: 1154 EEEQVLKVXXXXXXXXXXXXXXXXXXXXXXXXXS--YKDNLECHRCKKLGHFAYECPNGE 981
            EEEQVLK+                             K  +EC RC +LGH+ YECP+ E
Sbjct: 209  EEEQVLKISHEDRYGRGRGRGMFRGGRGRGRGRQPYNKALIECFRCHQLGHYQYECPDWE 268

Query: 980  EKAHYAELDE-DEEVLLMAAIE---SEIERIWYLDSGCSNHMCGEKEWFSTLDTTFRESV 813
            +KA+YAE +E +EE+LLM+ +E    E E +W+LDSGCSNHM G K+WFS LD +FR +V
Sbjct: 269  QKANYAEFEEKEEEILLMSYVEIKHDEKEEMWFLDSGCSNHMSGNKKWFSDLDESFRHTV 328

Query: 812  KLGDGSRITVEGKGTVKLRVKGMILVVTDVYYIPKLKNNLISLGQLQQKTELSISMHQDL 633
            KLG+ SR+ V GKG V++RV G   V+++VYYIP+LKNNL+S+GQLQ K  LSI +    
Sbjct: 329  KLGNDSRMAVIGKGNVRMRVNGFTQVISNVYYIPELKNNLLSIGQLQDKG-LSILIQHGK 387

Query: 632  CRVYHSDKGLIITSRMTKNKLFPVIATAV--SSSCLYTAKEDVSYLWHRRYGHLNMKSLK 459
            C +YH  KGLI+ + M+ NK+F ++A+ +   S+C     E+ SYLWH R+GHL+ + L+
Sbjct: 388  CMIYHPTKGLIMETIMSGNKMFCLVASMMPNESTCFQNVSENESYLWHCRFGHLSYQGLR 447

Query: 458  EMAQKNMVKGLPEIKESERNCNDCMKGKQHRNEFPKSSNWKASSKLELVHSDICGPITPE 279
             +  K MV GLP I+  ++ C +C+ GKQHR+   K S W+AS+KL+LVH+DICGPI PE
Sbjct: 448  TLFYKKMVNGLPSIQIPKKLCTECLIGKQHRDSMSKKSLWRASNKLQLVHADICGPIKPE 507

Query: 278  SSGKRRYILTFIDDFSRKTWVYFLIEKSAA-----------------------------L 186
            S+  +RY L+FIDDF+RKTW+YFL EKS A                              
Sbjct: 508  SNSNKRYFLSFIDDFTRKTWIYFLHEKSEAFAMFKNFKAYVEKESGAYITSLRTDRGGEF 567

Query: 185  SSNEFNEYCSVNGIKRQLTAAYSPQQNGIAERKNRTLMEMTRSLLAGKSIPKSFWPEAVN 6
            +SNEF E+C V GI RQLTAAY+PQQNG+AERKNRT+M M RS+L  K +PK FWPEAV 
Sbjct: 568  NSNEFEEFCKVQGISRQLTAAYTPQQNGVAERKNRTIMNMVRSMLVEKKVPKMFWPEAVK 627

Query: 5    W 3
            W
Sbjct: 628  W 628


>dbj|GAU51028.1| hypothetical protein TSUD_291040 [Trifolium subterraneum]
          Length = 1182

 Score =  546 bits (1406), Expect = e-180
 Identities = 277/537 (51%), Positives = 360/537 (67%), Gaps = 33/537 (6%)
 Frame = -1

Query: 1514 LDKDSSKAIWDSMKQKFQGTTKVKRSQLRAAKREFELLGMKDEETVSEYFGRTLAIVNKM 1335
            LDK SSKAIWDSMK KFQG+ KVKR+QL+A + EFE+L MK++E+V++YFGR LA+VNKM
Sbjct: 84   LDKSSSKAIWDSMKNKFQGSNKVKRAQLQALRGEFEILRMKEDESVNDYFGRVLALVNKM 143

Query: 1334 KIYGDSVDQSEIVEKVLRSMPEKFNYVIAAIDEGNDVTKMTIDELQGSLLVHEQRMFPQK 1155
            K+ G++++ S +VEK+LRSM  KFNYV+ AI+E NDV  ++ID LQGSLLVHEQ+M P K
Sbjct: 144  KMQGEAMEHSIVVEKILRSMARKFNYVVCAIEESNDVDTLSIDGLQGSLLVHEQKMKPAK 203

Query: 1154 EEEQVLKVXXXXXXXXXXXXXXXXXXXXXXXXXSYKDNLECHRCKKLGHFAYECPNGEEK 975
            EE+Q LK+                          +KDN+EC++C + GHF YECPN E+ 
Sbjct: 204  EEDQALKI-THGNGNTTRGRGRGGRTTQGRGKRLHKDNIECYKCHRFGHFQYECPNNEDY 262

Query: 974  AHYAELDEDEEVLLMA----AIESEIERIWYLDSGCSNHMCGEKEWFSTLDTTFRESVKL 807
            AHYA+ +E+EEVLLMA    +  S   +IWYLDSGCSNHMCG  E+F  LDT FRE+V+L
Sbjct: 263  AHYADYNENEEVLLMAFDKPSPSSVKNKIWYLDSGCSNHMCGVNEFFFDLDTNFRETVRL 322

Query: 806  GDGSRITVEGKGTVKLRVKGMILVVTDVYYIPKLKNNLISLGQLQQKTELSISMHQDLCR 627
            GD S++ V GKG VKL++ G+  ++T VYYIP+LKNNL+S+GQLQ+K +L+     + C+
Sbjct: 323  GDNSQMNVMGKGNVKLQMNGITQIITAVYYIPELKNNLLSIGQLQKK-DLTFVFKNNWCK 381

Query: 626  VYHSDKGLIITSRMTKNKLFPVIATAVSSSCLYTAKEDVSYLWHRRYGHLNMKSLKEMAQ 447
            VYH +KG                                       YGHLN KSLK + Q
Sbjct: 382  VYHQNKG---------------------------------------YGHLNYKSLKLLHQ 402

Query: 446  KNMVKGLPEIKESERNCNDCMKGKQHRNEFPKSSNWKASSKLELVHSDICGPITPESSGK 267
            KNMV+ +P+I++S+  C D + GKQHR+  PKSSNWK++ +LEL+HSD+CGPI+P S+  
Sbjct: 403  KNMVRDIPKIEDSKLVCEDFLIGKQHRDSIPKSSNWKSTKRLELIHSDLCGPISPASNSD 462

Query: 266  RRYILTFIDDFSRKTWVYFLIEKSAA-----------------------------LSSNE 174
             +Y+LTFIDDFSRKTWVYFL  KS+                               +S+E
Sbjct: 463  NKYVLTFIDDFSRKTWVYFLKNKSSVFDCFKKFKCMVEKESSEVICCLRTDRGGEFNSDE 522

Query: 173  FNEYCSVNGIKRQLTAAYSPQQNGIAERKNRTLMEMTRSLLAGKSIPKSFWPEAVNW 3
            F E+C  +GIKRQLTAAY+PQQNGIAERKNRT+M+M +S+LA K IPK FWPEAVNW
Sbjct: 523  FREFCEEHGIKRQLTAAYTPQQNGIAERKNRTIMDMVKSMLAAKDIPKEFWPEAVNW 579


>gb|PNX99755.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 1209

 Score =  545 bits (1403), Expect = e-179
 Identities = 272/543 (50%), Positives = 370/543 (68%), Gaps = 39/543 (7%)
 Frame = -1

Query: 1514 LDKDSSKAIWDSMKQKFQGTTKVKRSQLRAAKREFELLGMKDEETVSEYFGRTLAIVNKM 1335
            L + +S+ IW+SM++K+QG+ KVKR+QL++ +R+FE+L MK+ E+V+E+F RTLAI NKM
Sbjct: 60   LVRGTSRDIWESMRRKYQGSNKVKRAQLQSLRRDFEILCMKEGESVTEFFARTLAIANKM 119

Query: 1334 KIYGDSVDQSEIVEKVLRSMPEKFNYVIAAIDEGNDVTKMTIDELQGSLLVHEQRM--FP 1161
              +G+ +    IVEK+LRSM  KF YV+ +I+E +DVT M+IDELQ SLLVHE RM    
Sbjct: 120  TSHGERLTDGNIVEKILRSMTSKFEYVVCSIEESHDVTTMSIDELQSSLLVHEGRMKIHK 179

Query: 1160 QKEEEQVLKVXXXXXXXXXXXXXXXXXXXXXXXXXSY------KDNLECHRCKKLGHFAY 999
             KEEEQ LKV                                 K+ +EC+RC KLGH+  
Sbjct: 180  VKEEEQALKVSNSNLGRGSANSRGRGRTSSRGRGRGRSAASTSKEFVECYRCHKLGHYQN 239

Query: 998  ECPNGEEKAHYAELDEDEEVLLMAAIESEIE--RIWYLDSGCSNHMCGEKEWFSTLDTTF 825
            ECP  EE A++AE DE EE+L+MA  +S +   ++W+LDSGCSNHM G KEW    D TF
Sbjct: 240  ECPTWEENANFAEFDEHEEMLMMAQNQSNVNTNQVWFLDSGCSNHMIGTKEWLFDFDDTF 299

Query: 824  RESVKLGDGSRITVEGKGTVKLRVKGMILVVTDVYYIPKLKNNLISLGQLQQKTELSISM 645
            RE+VKLGD S ++V GKG VK+ ++G I V+TDVYY+P L+NNL+S+GQLQQK  L+I  
Sbjct: 300  RETVKLGDNSTMSVMGKGNVKISLQGKISVITDVYYLPNLRNNLLSIGQLQQKN-LTIVF 358

Query: 644  HQDLCRVYHSDKGLIITSRMTKNKLFPVIATAVSSSCLYTAKEDVSYLWHRRYGHLNMKS 465
             +D C+++H ++GLI+++ MT N+++ ++   ++ SCL TA +    LWH RYGHL+ K 
Sbjct: 359  SKDTCKIFHEERGLIVSTPMTVNRMYILLCPVITPSCLKTAHDSEGSLWHHRYGHLSFKG 418

Query: 464  LKEMAQKNMVKGLPEIKESERNCNDCMKGKQHRNEFPKSSNWKASSKLELVHSDICGPIT 285
            L  +A+K+MV GLP ++ES+  C+DC+  KQHR+  PK+S+W+A+ KLELVHSDICGPIT
Sbjct: 419  LHTLAKKDMVNGLPLLQESQELCSDCVISKQHRDSIPKTSSWRATEKLELVHSDICGPIT 478

Query: 284  PESSGKRRYILTFIDDFSRKTWVYFLIEKSAALS-------------------------- 183
            P S+G  RY +TF DD+SRKTW Y L EKS+AL+                          
Sbjct: 479  PTSNGGCRYFITFTDDYSRKTWTYPLKEKSSALAVFKRFKALVENESNQSIKCLRTDRGG 538

Query: 182  ---SNEFNEYCSVNGIKRQLTAAYSPQQNGIAERKNRTLMEMTRSLLAGKSIPKSFWPEA 12
               S+ FNE+CS  GIKRQLT AY+PQQNG++ERKNRTLM + RS+L G+++PK FWPEA
Sbjct: 539  EFLSDTFNEFCSEYGIKRQLTTAYTPQQNGVSERKNRTLMNVVRSMLNGRNVPKRFWPEA 598

Query: 11   VNW 3
            V W
Sbjct: 599  VVW 601


>dbj|GAU44758.1| hypothetical protein TSUD_246510 [Trifolium subterraneum]
          Length = 1301

 Score =  546 bits (1406), Expect = e-178
 Identities = 269/540 (49%), Positives = 366/540 (67%), Gaps = 37/540 (6%)
 Frame = -1

Query: 1511 DKDSSKAIWDSMKQKFQGTTKVKRSQLRAAKREFELLGMKDEETVSEYFGRTLAIVNKMK 1332
            D+D+S++IW++M++K+QG+TKVKR+ L+A +REFE+L MK+EE+V++YF RTLAI NKM 
Sbjct: 86   DRDTSRSIWEAMRRKYQGSTKVKRAHLQALRREFEVLAMKEEESVNDYFARTLAIANKMS 145

Query: 1331 IYGDSVDQSEIVEKVLRSMPEKFNYVIAAIDEGNDVTKMTIDELQGSLLVHEQRMFPQKE 1152
              G  ++ + IVEK+LRSMP KFNYV+ +I++ NDVT ++IDELQ SL+V EQRM  Q  
Sbjct: 146  AQG--MEHTAIVEKILRSMPPKFNYVVCSIEQSNDVTTLSIDELQSSLIVQEQRMKAQDS 203

Query: 1151 --EEQVLKVXXXXXXXXXXXXXXXXXXXXXXXXXSY-KDNLECHRCKKLGHFAYECPNGE 981
              EE  LKV                            K+N+EC +C KLGH+  ECPN E
Sbjct: 204  HSEEHALKVSNPGRGVGRGRVRNYTNASRGHGRRIQNKENVECFKCHKLGHYQSECPNWE 263

Query: 980  -EKAHYAELDEDEEVLLMAAIESEIERI----WYLDSGCSNHMCGEKEWFSTLDTTFRES 816
               A+YAE ++ EEVLLMA  +S   +     W+LDSGCSNHM G K+W    D T+ +S
Sbjct: 264  GNDANYAEFNQYEEVLLMAKTDSNQHKYENETWFLDSGCSNHMVGHKDWMFEFDETYSDS 323

Query: 815  VKLGDGSRITVEGKGTVKLRVKGMILVVTDVYYIPKLKNNLISLGQLQQKTELSISMHQD 636
            VKLGD SR+ V+GKG VKL + G++ V+++VY++P LK NL+S+GQLQQK ++++    D
Sbjct: 324  VKLGDDSRMAVKGKGNVKLCINGVVHVISNVYFVPGLKTNLLSIGQLQQK-QITVIFKND 382

Query: 635  LCRVYHSDKGLIITSRMTKNKLFPVIATAVSSSCLYTAKEDVSYLWHRRYGHLNMKSLKE 456
            +C+VYH DKGL+ T+ MT N ++ V AT +S  CL TAK++ + LWH R+ H + K L  
Sbjct: 383  MCKVYHDDKGLLFTTEMTNNMMYIVSATVISPMCLRTAKQESTLLWHNRFAHFSFKGLNA 442

Query: 455  MAQKNMVKGLPEIKESERNCNDCMKGKQHRNEFPKSSNWKASSKLELVHSDICGPITPES 276
            +A+K MV+GLPE++E E NC DC+ GKQHR   PK + W+AS+KLEL+HSDICGPI P S
Sbjct: 443  LAKKQMVRGLPELEELEENCVDCLSGKQHRGTIPKQAKWRASTKLELIHSDICGPINPSS 502

Query: 275  SGKRRYILTFIDDFSRKTWVYFLIEKSAAL-----------------------------S 183
            +G  RY +TF DD+SR TWVY + EKS+A                              +
Sbjct: 503  NGGNRYFITFTDDYSRMTWVYVMKEKSSAFEVFKVFKAMVEKETGTSIVCLRSDRGGEYT 562

Query: 182  SNEFNEYCSVNGIKRQLTAAYSPQQNGIAERKNRTLMEMTRSLLAGKSIPKSFWPEAVNW 3
            SN FNE+C   GIKRQLTAAY+PQQNG++ERKNRTL+ M RS+++ +++PK  WPEAV W
Sbjct: 563  SNVFNEFCREEGIKRQLTAAYTPQQNGVSERKNRTLLNMVRSMISARNMPKQIWPEAVIW 622


>gb|PNY01730.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 861

 Score =  531 bits (1369), Expect = e-178
 Identities = 264/536 (49%), Positives = 359/536 (66%), Gaps = 32/536 (5%)
 Frame = -1

Query: 1514 LDKDSSKAIWDSMKQKFQGTTKVKRSQLRAAKREFELLGMKDEETVSEYFGRTLAIVNKM 1335
            L++++++ IW++M+ K+QG+TKVKR+QL+A +REFE+L M + E+V EYF RT+ I NKM
Sbjct: 85   LNRETARDIWNAMRVKYQGSTKVKRAQLQALRREFEVLEMGESESVEEYFARTMIITNKM 144

Query: 1334 KIYGDSVDQSEIVEKVLRSMPEKFNYVIAAIDEGNDVTKMTIDELQGSLLVHEQRMFPQ- 1158
               G+ V+Q+ +VEK+LRSM  KFN+V+ +I+  +DVT ++IDELQ SL+VHEQRM  Q 
Sbjct: 145  TSCGERVEQTTVVEKILRSMTAKFNHVVCSIELSSDVTTLSIDELQSSLIVHEQRMKGQQ 204

Query: 1157 -KEEEQVLKVXXXXXXXXXXXXXXXXXXXXXXXXXSYKDNLECHRCKKLGHFAYECPNGE 981
             K+EEQ LKV                           K+N EC +C KLGH+  +CPN  
Sbjct: 205  VKQEEQALKVTNGGRDRGGRNSNSSRGRGRGRQS---KENAECFKCHKLGHYQSDCPNWG 261

Query: 980  EKAHYAELDEDEEVLLMAAIESEIE-RIWYLDSGCSNHMCGEKEWFSTLDTTFRESVKLG 804
            E A+YAE D++EE+LLMA    + +   W+LDSGCS HM G K+WF   D  +R+SVKLG
Sbjct: 262  ENANYAEFDDEEEMLLMAKTNDDAKSENWFLDSGCSYHMAGNKDWFYDFDENYRDSVKLG 321

Query: 803  DGSRITVEGKGTVKLRVKGMILVVTDVYYIPKLKNNLISLGQLQQKTELSISMHQDLCRV 624
            D SR+ V GKG VKL + G + ++TDVY+IP LK NL+S+GQ+QQK   +I    D+C+V
Sbjct: 322  DDSRMNVMGKGNVKLSINGRVHILTDVYFIPGLKTNLLSIGQIQQKNT-TIVFKNDICKV 380

Query: 623  YHSDKGLIITSRMTKNKLFPVIATAVSSSCLYTAKEDVSYLWHRRYGHLNMKSLKEMAQK 444
            YH +KGL+  + M+ N+++ V A  ++  CL  +K   S LWH RY HL++K L  +  K
Sbjct: 381  YHREKGLLFATYMSTNRMYVVKAEVIAPRCLQASKIVNSQLWHNRYCHLSIKGLNILVIK 440

Query: 443  NMVKGLPEIKESERNCNDCMKGKQHRNEFPKSSNWKASSKLELVHSDICGPITPESSGKR 264
            +MVKGLP +KE + NC +C+ GKQH++  PK + W+AS KLELVHSDICGPI P+S+G  
Sbjct: 441  DMVKGLPALKELDENCVNCLVGKQHKDAIPKQATWRASLKLELVHSDICGPINPKSNGGN 500

Query: 263  RYILTFIDDFSRKTWVYFLIEKSAALS-----------------------------SNEF 171
             Y +TF DD +RKTW+Y L EKS++L                              SN F
Sbjct: 501  MYFITFTDDLTRKTWIYLLKEKSSSLEIFKQFKAMVEKESSCSIQCLRTDRGGEYVSNAF 560

Query: 170  NEYCSVNGIKRQLTAAYSPQQNGIAERKNRTLMEMTRSLLAGKSIPKSFWPEAVNW 3
            NE+CS +GIKRQLT AY+PQQNG++ERKNRTLM M RS+LAGK +PK FWPEA+ W
Sbjct: 561  NEFCSNHGIKRQLTTAYTPQQNGVSERKNRTLMNMVRSMLAGKGVPKVFWPEALKW 616


>dbj|GAU13723.1| hypothetical protein TSUD_348270 [Trifolium subterraneum]
          Length = 1117

 Score =  538 bits (1387), Expect = e-178
 Identities = 262/541 (48%), Positives = 371/541 (68%), Gaps = 37/541 (6%)
 Frame = -1

Query: 1514 LDKDSSKAIWDSMKQKFQGTTKVKRSQLRAAKREFELLGMKDEETVSEYFGRTLAIVNKM 1335
            LD+ +S+ IW+SM+QKFQG+ +VKR+QL++ +REFE+L MK++E+V+++F RTL I NKM
Sbjct: 81   LDRSTSRQIWESMRQKFQGSNRVKRAQLQSLRREFEVLWMKEDESVNDFFSRTLVIANKM 140

Query: 1334 KIYGDSVDQSEIVEKVLRSMPEKFNYVIAAIDEGNDVTKMTIDELQGSLLVHEQRM--FP 1161
              +G+S+DQ +IVEK+LRSM  KF YV+ +I++  D T M+IDELQ SLLVHE RM    
Sbjct: 141  TAHGESLDQGQIVEKILRSMSAKFEYVVCSIEQSCDTTTMSIDELQSSLLVHEGRMNHHK 200

Query: 1160 QKEEEQVLKVXXXXXXXXXXXXXXXXXXXXXXXXXSY--KDNLECHRCKKLGHFAYECPN 987
             K+EEQ LK+                         +   K+++EC++C KLGH+  ECP 
Sbjct: 201  AKQEEQALKITNLGRGNGNSRGRGRHSSRGRGRGRNTIPKEHVECYKCHKLGHYQNECPT 260

Query: 986  GEEKAHYA-ELDEDEEVLLMAAIESEI---ERIWYLDSGCSNHMCGEKEWFSTLDTTFRE 819
             EE A++A E +E EE+LLM    +     +++W+LDSGCSNHM G KEW    D  FRE
Sbjct: 261  WEENANFAYEFNEHEEILLMTQQHTHTNTSDQVWFLDSGCSNHMIGTKEWLFNFDDKFRE 320

Query: 818  SVKLGDGSRITVEGKGTVKLRVKGMILVVTDVYYIPKLKNNLISLGQLQQKTELSISMHQ 639
            +VK+GD S + V GKG VKL + G + V++DVYY+P LKNNL+S+GQLQQK  L+I   +
Sbjct: 321  TVKIGDNSTMQVMGKGNVKLYLAGQVTVISDVYYLPDLKNNLLSIGQLQQKN-LTIVFSK 379

Query: 638  DLCRVYHSDKGLIITSRMTKNKLFPVIATAVSSSCLYTAKEDVSYLWHRRYGHLNMKSLK 459
            D+C+++H  KGLI+T++MT N+++ ++A  +  +C     +D  +LWH RYGHL+ K L 
Sbjct: 380  DVCKIFHEGKGLIVTTQMTVNRMYIILAPVMLPTCFKVTNKDEGHLWHCRYGHLSFKGLN 439

Query: 458  EMAQKNMVKGLPEIKESERNCNDCMKGKQHRNEFPKSSNWKASSKLELVHSDICGPITPE 279
             +A++ MVKGLP +K+++  C+DC+  KQHR+ FPK+++W+A+SKLELVHSDICGPI P 
Sbjct: 440  TLAKREMVKGLPMVKDNQTVCSDCVVSKQHRDTFPKNASWRATSKLELVHSDICGPINPT 499

Query: 278  SSGKRRYILTFIDDFSRKTWVYFLIEKSAAL----------------------------- 186
            S+G  +Y +TF DD +RKTW Y L +K++A                              
Sbjct: 500  SNGGSKYFITFTDDVTRKTWTYPLKDKASAFDCFKKFKALIEKESDCTIKCLRTDRGGEF 559

Query: 185  SSNEFNEYCSVNGIKRQLTAAYSPQQNGIAERKNRTLMEMTRSLLAGKSIPKSFWPEAVN 6
            +S++FNE+CS +GIKRQLTAAY+PQQNG++ERKN+TL+ M RS+L GK +PK FWPEAV 
Sbjct: 560  TSSKFNEFCSEHGIKRQLTAAYTPQQNGVSERKNKTLLNMVRSMLVGKCVPKLFWPEAVV 619

Query: 5    W 3
            W
Sbjct: 620  W 620


>gb|PNX96091.1| retrotransposon-related protein [Trifolium pratense]
          Length = 1326

 Score =  543 bits (1399), Expect = e-177
 Identities = 266/542 (49%), Positives = 371/542 (68%), Gaps = 38/542 (7%)
 Frame = -1

Query: 1514 LDKDSSKAIWDSMKQKFQGTTKVKRSQLRAAKREFELLGMKDEETVSEYFGRTLAIVNKM 1335
            L KD+SK IWD+MK+K++G  +VKRS L+A +REFE+L M+++E ++EYF R + + NKM
Sbjct: 87   LKKDTSKEIWDAMKKKYEGNERVKRSHLQALRREFEILEMREDEGMTEYFSRVMTVANKM 146

Query: 1334 KIYGDSVDQSEIVEKVLRSMPEKFNYVIAAIDEGNDVTKMTIDELQGSLLVHEQRMFPQK 1155
            +IYG+++   ++VEK+LRS+ EKFNY++ +I+E  D+  ++IDELQ SL VHEQ+   + 
Sbjct: 147  RIYGENMPDVKVVEKILRSLTEKFNYIVCSIEESKDIDSLSIDELQSSLTVHEQKFQRRN 206

Query: 1154 EEEQVLKVXXXXXXXXXXXXXXXXXXXXXXXXXSYKDNLECHRCKKLGHFAYECPNGEEK 975
             +EQ LKV                         + K  +EC++C KLGHF YECP+  E 
Sbjct: 207  GDEQALKVTYEGGRGRGRGAFRGRGRGRGRTNFN-KATMECYQCHKLGHFRYECPDNRE- 264

Query: 974  AHYAELDEDEEVLLMAAIE---SEIERIWYLDSGCSNHMCGEKEWFSTLDTTFRESVKLG 804
            A+Y E DE EE+LLM+ +E   ++ E  W+LDSGCSNHMCG++  FS LD  FR SVKLG
Sbjct: 265  ANYVENDE-EELLLMSFVELYDAKREDAWFLDSGCSNHMCGDRTMFSELDENFRHSVKLG 323

Query: 803  DGSRITVEGKGTVKLRVKGMILVVTDVYYIPKLKNNLISLGQLQQKTELSISMHQDLCRV 624
            + +++ V GKG+VK  + G   +VT+VYYIP+L+NNL+S+GQLQ+K  L+I +   +C++
Sbjct: 324  NNTKMNVVGKGSVKFLLNGTNFIVTEVYYIPELRNNLLSIGQLQEKG-LAILIKGGMCKI 382

Query: 623  YHSDKGLIITSRMTKNKLFP------VIATAVSSSCLYTAKEDVSYLWHRRYGHLNMKSL 462
            +H +KGLII + M+ N++F       V   A S  C +T  +D+S+LWHRRYGHL+ K L
Sbjct: 383  FHPEKGLIIQTNMSTNRMFTLRSQAQVSPQAQSDQCFHTKAQDLSHLWHRRYGHLSYKGL 442

Query: 461  KEMAQKNMVKGLPEIKESERNCNDCMKGKQHRNEFPKSSNWKASSKLELVHSDICGPITP 282
            + +  KNMV+GLP+   S   C +C+ GKQHR+  PK SNW+A+ KLEL+H+D+CGPI+P
Sbjct: 443  RTLLYKNMVRGLPQFSISSVICTNCINGKQHRDPIPKKSNWRATQKLELIHADVCGPISP 502

Query: 281  ESSGKRRYILTFIDDFSRKTWVYFLIEKSAAL---------------------------- 186
             S+  +RYIL FIDD+SRK+WVYFL+EKS AL                            
Sbjct: 503  SSNSNKRYILLFIDDYSRKSWVYFLVEKSEALNSFKCFKTMVEKEAEMAIKCLRTDRGGE 562

Query: 185  -SSNEFNEYCSVNGIKRQLTAAYSPQQNGIAERKNRTLMEMTRSLLAGKSIPKSFWPEAV 9
             +SNEFN++C  +G+KRQLT AY+PQQNG+AERKNRT+M M RSLL  K+IPK+FWPEAV
Sbjct: 563  FNSNEFNDFCKQSGVKRQLTTAYTPQQNGVAERKNRTVMNMVRSLLFDKNIPKTFWPEAV 622

Query: 8    NW 3
            NW
Sbjct: 623  NW 624


>dbj|GAU37486.1| hypothetical protein TSUD_275380 [Trifolium subterraneum]
          Length = 1421

 Score =  545 bits (1403), Expect = e-177
 Identities = 272/539 (50%), Positives = 365/539 (67%), Gaps = 35/539 (6%)
 Frame = -1

Query: 1514 LDKDSSKAIWDSMKQKFQGTTKVKRSQLRAAKREFELLGMKDEETVSEYFGRTLAIVNKM 1335
            LD+D++KAIWDSM+ K+QG+TKVKR+QL+A +++FE+L M++ E+V EYF RTLAI N+M
Sbjct: 85   LDRDTTKAIWDSMRSKYQGSTKVKRAQLQALRKDFEVLAMREGESVDEYFARTLAIANRM 144

Query: 1334 KIYGDSVDQSEIVEKVLRSMPEKFNYVIAAIDEGNDVTKMTIDELQGSLLVHEQRMFPQ- 1158
              YG+ ++Q  IVEKVLRS+  KFNYV+ +I++  DVT + ID LQ SLLV EQR+  Q 
Sbjct: 145  IAYGERMEQVVIVEKVLRSLLPKFNYVVCSIEQSTDVTTLGIDALQSSLLVQEQRLKSQS 204

Query: 1157 -KEEEQVLKVXXXXXXXXXXXXXXXXXXXXXXXXXSYKDNLECHRCKKLGHFAYECPN-G 984
             KEEEQ LKV                         S K+N+EC++C K+G++  +CP+ G
Sbjct: 205  EKEEEQALKVSSAGRGNSNRGRGRNSSRGRGRGRVS-KENVECYKCHKMGYYQSDCPSWG 263

Query: 983  EEKAHYAELDEDEEVLLMAAIESEI---ERIWYLDSGCSNHMCGEKEWFSTLDTTFRESV 813
            E  A+YA  D+++E+LLMA  E E    + +W+LDSGCSNHM G KEW        RE V
Sbjct: 264  ENDANYAVFDQNDEILLMAQHEVETNARDEVWFLDSGCSNHMIGTKEWLYDFYENIRECV 323

Query: 812  KLGDGSRITVEGKGTVKLRVKGMILVVTDVYYIPKLKNNLISLGQLQQKTELSISMHQDL 633
            KLGD SR+ ++GKG +KL + G+  V+TDVYYIP LKNNL+S+GQLQQK  L+I   +DL
Sbjct: 324  KLGDDSRMQIKGKGNLKLCIGGLTQVITDVYYIPGLKNNLLSIGQLQQKN-LTIVFKKDL 382

Query: 632  CRVYHSDKGLIITSRMTKNKLFPVIATAVSSSCLYTAKEDVSYLWHRRYGHLNMKSLKEM 453
            C+VYH +KGLI++++M+ N+++ + A  +   C  T K D + LWH RY HL+ K L  +
Sbjct: 383  CKVYHEEKGLIMSTKMSSNRMYVIFAPVIVPMCFKTVKMDNNELWHCRYDHLSFKGLNTL 442

Query: 452  AQKNMVKGLPEIKESERNCNDCMKGKQHRNEFPKSSNWKASSKLELVHSDICGPITPESS 273
             +K MVKGLP +++ E  C  C+ GKQHR   PKSS+W+A+  LELVHSDIC PITP+S+
Sbjct: 443  VKKEMVKGLPHLQDMEDTCVSCLTGKQHREAIPKSSDWRATRPLELVHSDICEPITPQSN 502

Query: 272  GKRRYILTFIDDFSRKTWVYFLIEKSAAL-----------------------------SS 180
            G  RY +TF DDFSRKTW Y L  K+ A                              +S
Sbjct: 503  GGNRYFITFTDDFSRKTWTYLLANKACAFDEFKKFKTLVEKEPNTQIMCLRTDRGGEFTS 562

Query: 179  NEFNEYCSVNGIKRQLTAAYSPQQNGIAERKNRTLMEMTRSLLAGKSIPKSFWPEAVNW 3
            N FNEYCS +GIKRQLT AY+PQQNG++ERKNRTL+ M RS+LAG+S+P++FWPEA+ W
Sbjct: 563  NAFNEYCSTHGIKRQLTTAYTPQQNGVSERKNRTLLNMVRSMLAGRSVPETFWPEALKW 621


>dbj|GAU23220.1| hypothetical protein TSUD_172480 [Trifolium subterraneum]
          Length = 1323

 Score =  535 bits (1379), Expect = e-174
 Identities = 262/541 (48%), Positives = 368/541 (68%), Gaps = 37/541 (6%)
 Frame = -1

Query: 1514 LDKDSSKAIWDSMKQKFQGTTKVKRSQLRAAKREFELLGMKDEETVSEYFGRTLAIVNKM 1335
            LD+ +S+ IW+SM+QKFQG+ +VKR+QL+  +REFE+L MKD+E+V+++F RTL I NKM
Sbjct: 85   LDRSTSRQIWESMRQKFQGSNRVKRAQLQTLRREFEVLWMKDDESVNDFFSRTLVIANKM 144

Query: 1334 KIYGDSVDQSEIVEKVLRSMPEKFNYVIAAIDEGNDVTKMTIDELQGSLLVHEQRM--FP 1161
              +G+S+DQ +IVEK+LRSM  KF YV+ +I++  D + M+IDELQ SLLVHE RM    
Sbjct: 145  TAHGESLDQGQIVEKILRSMSTKFEYVVCSIEQSCDTSTMSIDELQSSLLVHEGRMNHHK 204

Query: 1160 QKEEEQVLKVXXXXXXXXXXXXXXXXXXXXXXXXXSY--KDNLECHRCKKLGHFAYECPN 987
             K+EEQ LK+                         +   K+++EC++C +LGH+  ECP 
Sbjct: 205  AKQEEQALKITNLGRGNGNARGRGRNSYRGRGRGRNTISKEHVECYKCHRLGHYQNECPT 264

Query: 986  GEEKAHYA-ELDEDEEVLLMAAIESEI---ERIWYLDSGCSNHMCGEKEWFSTLDTTFRE 819
             EE A++A E +E EE+LLM    +     +++W+LDSGCSNHM G KEW    D  FRE
Sbjct: 265  WEENANFAYEFNEHEEILLMTQQHTHTNTSDQVWFLDSGCSNHMIGTKEWLFNFDDKFRE 324

Query: 818  SVKLGDGSRITVEGKGTVKLRVKGMILVVTDVYYIPKLKNNLISLGQLQQKTELSISMHQ 639
            +VKLGD S + V GKG VKL + G + V++DVYY+P LKNNL+S+GQLQQK  L+I   +
Sbjct: 325  TVKLGDNSTMQVMGKGNVKLYLAGQVTVISDVYYLPDLKNNLLSIGQLQQKN-LTIVFSK 383

Query: 638  DLCRVYHSDKGLIITSRMTKNKLFPVIATAVSSSCLYTAKEDVSYLWHRRYGHLNMKSLK 459
            D+C+++H  KGLI+T++MT N+++ ++A  +  +C   + +D  +LWH RYGHL+ K L 
Sbjct: 384  DVCKIFHEGKGLIVTTQMTVNRMYIILAPVMLPACFKVSNQDEGHLWHCRYGHLSFKGLN 443

Query: 458  EMAQKNMVKGLPEIKESERNCNDCMKGKQHRNEFPKSSNWKASSKLELVHSDICGPITPE 279
             +A++ MVKGLP +K+ +  C+DC+  KQHR+ FPK ++W+A+SKLELVHSDICGPI P 
Sbjct: 444  TLAKREMVKGLPMVKDDQTVCSDCVVSKQHRDTFPKIASWRATSKLELVHSDICGPINPT 503

Query: 278  SSGKRRYILTFIDDFSRKTWVYFLIEKSAA-----------------------------L 186
            S+G  +Y +TF DD +RKTW Y L +K++A                              
Sbjct: 504  SNGGSKYFITFTDDLTRKTWTYPLKDKASAFDCFRKFKALVEKESDCTIKCLRTDRGGEF 563

Query: 185  SSNEFNEYCSVNGIKRQLTAAYSPQQNGIAERKNRTLMEMTRSLLAGKSIPKSFWPEAVN 6
            +S++FNE+CS +GIKRQLTAAY+PQQNG++ERKN TL+ M RS+L GK +PK FWPEAV 
Sbjct: 564  TSSKFNEFCSEHGIKRQLTAAYTPQQNGVSERKNITLLNMVRSMLVGKHVPKLFWPEAVV 623

Query: 5    W 3
            W
Sbjct: 624  W 624