BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus22_contig00029928
         (743 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNY12420.1| ribonuclease H [Trifolium pratense]                    160   1e-47
gb|PNX79184.1| ribonuclease H, partial [Trifolium pratense]           160   1e-47
gb|PNX72990.1| ribonuclease H, partial [Trifolium pratense]           158   5e-47
dbj|GAU13938.1| hypothetical protein TSUD_262650 [Trifolium subt...   154   1e-46
gb|PNX86072.1| ribonuclease H, partial [Trifolium pratense]           156   2e-46
gb|PNX97917.1| ribonuclease H [Trifolium pratense]                    154   4e-46
gb|PNY02920.1| ribonuclease H, partial [Trifolium pratense]           156   5e-46
gb|PNY03121.1| ribonuclease H, partial [Trifolium pratense]           157   5e-46
gb|PNY14273.1| ribonuclease H, partial [Trifolium pratense]           151   8e-46
gb|PNX75251.1| ribonuclease H, partial [Trifolium pratense]           154   1e-45
gb|PNY13536.1| ribonuclease H [Trifolium pratense]                    156   3e-45
gb|PNY15946.1| ribonuclease H, partial [Trifolium pratense]           152   4e-45
gb|PNX97265.1| ribonuclease H, partial [Trifolium pratense]           149   9e-45
dbj|GAU38338.1| hypothetical protein TSUD_61990 [Trifolium subte...   150   3e-44
dbj|GAU26489.1| hypothetical protein TSUD_361220 [Trifolium subt...   145   8e-44
gb|PNX92647.1| ribonuclease H, partial [Trifolium pratense]           147   1e-43
dbj|GAU45807.1| hypothetical protein TSUD_87100 [Trifolium subte...   147   5e-43
gb|PNX91173.1| ribonuclease H, partial [Trifolium pratense]           148   6e-43
dbj|GAU34270.1| hypothetical protein TSUD_321160 [Trifolium subt...   147   1e-42
dbj|GAU35481.1| hypothetical protein TSUD_384360 [Trifolium subt...   144   1e-42

>gb|PNY12420.1| ribonuclease H [Trifolium pratense]
          Length = 1341

 Score =  160 bits (406), Expect(2) = 1e-47
 Identities = 81/160 (50%), Positives = 111/160 (69%), Gaps = 7/160 (4%)
 Frame = +2

Query: 140  W*ALTAGRYETIISRLMFAYDIILFGQATEAHIRML-------LVWVG*LVSNSKTIIYF 298
            W  + AGR   ++S LMFA D++LFG+A+E  I+ +        +  G  +S  KT I F
Sbjct: 640  WKGIKAGRNGPVVSHLMFADDLLLFGEASEQQIKCIKDTMQKFCIMSGQEISQDKTSILF 699

Query: 299  SESVEAHMRRTLVDLSCFRETDTLGKYLGVSLNRRAPKKADFQYLIDQVNSKLSTWKAKH 478
            S +VE  MR T++++S F+ET+  GKYLGV LN RAPK+ADFQYL+DQV+ KLS WKAKH
Sbjct: 700  SRNVERCMRNTILNISGFKETNDFGKYLGVPLNGRAPKRADFQYLLDQVSMKLSNWKAKH 759

Query: 479  LSFIGCVTLTKPVLEPLPIYAMMIAAIPKACLHEIQKMQR 598
            LSF G VTL K V+E +P+Y  M A +PK+ L +I+++QR
Sbjct: 760  LSFAGRVTLAKSVIEAVPVYTFMSAKVPKSVLDDIERLQR 799



 Score = 58.2 bits (139), Expect(2) = 1e-47
 Identities = 23/44 (52%), Positives = 30/44 (68%)
 Frame = +1

Query: 604 IWGDDANNKNLHAVSWEVITKPKKFGGLGFQKLEVVNTTCTMKL 735
           IWGD    +  HA+ WE +T PK+ GGLGF+KLE +N  C +KL
Sbjct: 802 IWGDTDQKRRHHAIGWEKLTVPKRMGGLGFRKLETMNKACLLKL 845


>gb|PNX79184.1| ribonuclease H, partial [Trifolium pratense]
          Length = 623

 Score =  160 bits (405), Expect(2) = 1e-47
 Identities = 83/160 (51%), Positives = 111/160 (69%), Gaps = 7/160 (4%)
 Frame = +2

Query: 140 W*ALTAGRYETIISRLMFAYDIILFGQATEAHIRMLL-------VWVG*LVSNSKTIIYF 298
           W  +  GR   +IS LMFA D++LFG+A+E  +R ++          G  VS++KT + F
Sbjct: 369 WKGIKMGRRGPMISHLMFADDLLLFGEASEPQMRCVMDSLQRFCTMSGQEVSHNKTSVLF 428

Query: 299 SESVEAHMRRTLVDLSCFRETDTLGKYLGVSLNRRAPKKADFQYLIDQVNSKLSTWKAKH 478
           S +VE ++R  L+++S F ET   GKYLGV L+ RAP+++DFQYL+DQV++KLS WKA H
Sbjct: 429 SRNVERNLRNKLLNISGFNETSNFGKYLGVPLHGRAPRRSDFQYLLDQVSAKLSMWKANH 488

Query: 479 LSFIGCVTLTKPVLEPLPIYAMMIAAIPKACLHEIQKMQR 598
           LSF G VTL K V+E +PIY MM + IPKACL EI KMQR
Sbjct: 489 LSFAGRVTLAKSVIEAVPIYPMMSSLIPKACLEEIHKMQR 528



 Score = 58.5 bits (140), Expect(2) = 1e-47
 Identities = 24/45 (53%), Positives = 31/45 (68%)
 Frame = +1

Query: 604 IWGDDANNKNLHAVSWEVITKPKKFGGLGFQKLEVVNTTCTMKLG 738
           IWGD    +  HA+SW+ IT PK  GGLG +KL+V+N  C +KLG
Sbjct: 531 IWGDTDQKRRFHAISWDRITVPKWMGGLGLRKLDVMNKACLLKLG 575


>gb|PNX72990.1| ribonuclease H, partial [Trifolium pratense]
          Length = 892

 Score =  158 bits (399), Expect(2) = 5e-47
 Identities = 83/161 (51%), Positives = 112/161 (69%), Gaps = 7/161 (4%)
 Frame = +2

Query: 140 W*ALTAGRYETIISRLMFAYDIILFGQATEAHIRMLLVWV-------G*LVSNSKTIIYF 298
           W  L AGR   ++S LMFA D++LFG+ATE  ++ +L  +       G  VS  KT I F
Sbjct: 301 WRTLRAGRNGPLVSHLMFADDLLLFGEATEKQVQCILGILNAFCNMSGQEVSKEKTSIVF 360

Query: 299 SESVEAHMRRTLVDLSCFRETDTLGKYLGVSLNRRAPKKADFQYLIDQVNSKLSTWKAKH 478
           S++V+ + R+ LV +S FRE++ LGKYLGV L  RAP++ DFQY+IDQ+++KL+ WKA+ 
Sbjct: 361 SKNVDGNTRQKLVQMSGFRESNQLGKYLGVPLTGRAPRRDDFQYVIDQISAKLTNWKAQQ 420

Query: 479 LSFIGCVTLTKPVLEPLPIYAMMIAAIPKACLHEIQKMQRS 601
           LSF G VTL K V+E  PIY MM   IPK+CL EIQK+QR+
Sbjct: 421 LSFAGRVTLAKSVIEATPIYPMMTNKIPKSCLEEIQKLQRN 461



 Score = 58.9 bits (141), Expect(2) = 5e-47
 Identities = 24/45 (53%), Positives = 31/45 (68%)
 Frame = +1

Query: 604 IWGDDANNKNLHAVSWEVITKPKKFGGLGFQKLEVVNTTCTMKLG 738
           IWGD    K  HA+ WE +TKPK  GGLG ++L+V+N  C +KLG
Sbjct: 463 IWGDKDGVKKYHAIGWEKVTKPKYCGGLGLRRLDVMNQACILKLG 507


>dbj|GAU13938.1| hypothetical protein TSUD_262650 [Trifolium subterraneum]
          Length = 875

 Score =  154 bits (389), Expect(2) = 1e-46
 Identities = 83/161 (51%), Positives = 109/161 (67%), Gaps = 7/161 (4%)
 Frame = +2

Query: 140 W*ALTAGRYETIISRLMFAYDIILFGQATEAHIRMLLVWV-------G*LVSNSKTIIYF 298
           W  + AGR   ++S LMFA D++LFG+A+E  ++ +L  +       G  VS  KT I F
Sbjct: 173 WRGIKAGRAGPMVSHLMFADDLLLFGEASEKQVQCVLDILNVFCSLSGQEVSQEKTSILF 232

Query: 299 SESVEAHMRRTLVDLSCFRETDTLGKYLGVSLNRRAPKKADFQYLIDQVNSKLSTWKAKH 478
           S++V   +R  L+ +S FRET+ LGKYLGV LN RAPK A++ YLIDQV +KLS WKAK 
Sbjct: 233 SKNVRRRVRDKLLSMSGFRETNDLGKYLGVPLNGRAPKNAEYHYLIDQVKNKLSAWKAKQ 292

Query: 479 LSFIGCVTLTKPVLEPLPIYAMMIAAIPKACLHEIQKMQRS 601
           LSF G +TL K VLE +PIY  M   IPKACL +IQ++QR+
Sbjct: 293 LSFAGRLTLAKSVLEAVPIYPRMTEKIPKACLDDIQRIQRN 333



 Score = 61.2 bits (147), Expect(2) = 1e-46
 Identities = 25/45 (55%), Positives = 33/45 (73%)
 Frame = +1

Query: 604 IWGDDANNKNLHAVSWEVITKPKKFGGLGFQKLEVVNTTCTMKLG 738
           IWGD  N +  HAV+W ++T+PK  GGLG +KLEV+N  C +KLG
Sbjct: 335 IWGDYDNVRKFHAVNWNMVTRPKWMGGLGLRKLEVMNQACLLKLG 379


>gb|PNX86072.1| ribonuclease H, partial [Trifolium pratense]
          Length = 494

 Score =  156 bits (395), Expect(2) = 2e-46
 Identities = 83/161 (51%), Positives = 110/161 (68%), Gaps = 7/161 (4%)
 Frame = +2

Query: 140 W*ALTAGRYETIISRLMFAYDIILFGQATEAHIRMLLVWV-------G*LVSNSKTIIYF 298
           W  + AGR   ++S LMFA D++LFG+ATE  +  ++  +       G  VS  KT IYF
Sbjct: 135 WCGIKAGRNGHMVSHLMFADDLLLFGEATELQMNCVIETLNKFCSLSGQEVSQEKTSIYF 194

Query: 299 SESVEAHMRRTLVDLSCFRETDTLGKYLGVSLNRRAPKKADFQYLIDQVNSKLSTWKAKH 478
           S++V   M+  LV +S F+ET +LG+YLGV L  RAPK+ DFQYL+DQV +KL+ WKAK 
Sbjct: 195 SKNVNKEMKNKLVRISGFKETTSLGRYLGVPLLGRAPKRNDFQYLVDQVEAKLAGWKAKQ 254

Query: 479 LSFIGCVTLTKPVLEPLPIYAMMIAAIPKACLHEIQKMQRS 601
           LSF G VTL K VLE +PIY MM   IPK+CL +IQ++QR+
Sbjct: 255 LSFAGRVTLAKSVLEAVPIYPMMTTKIPKSCLDDIQRIQRN 295



 Score = 58.5 bits (140), Expect(2) = 2e-46
 Identities = 25/45 (55%), Positives = 29/45 (64%)
 Frame = +1

Query: 604 IWGDDANNKNLHAVSWEVITKPKKFGGLGFQKLEVVNTTCTMKLG 738
           IWGD  + K  HAVSWE +T PK  GGLG + LE +N  C  KLG
Sbjct: 297 IWGDTESGKKFHAVSWEKVTTPKWMGGLGLRNLECMNQACLSKLG 341


>gb|PNX97917.1| ribonuclease H [Trifolium pratense]
          Length = 712

 Score =  154 bits (389), Expect(2) = 4e-46
 Identities = 81/161 (50%), Positives = 109/161 (67%), Gaps = 7/161 (4%)
 Frame = +2

Query: 140 W*ALTAGRYETIISRLMFAYDIILFGQATEAHIRMLLVWV-------G*LVSNSKTIIYF 298
           W  + AGR   ++S LMFA D++LFG+A E  ++ ++  +       G  VS  KT IYF
Sbjct: 17  WKGIKAGRNGPMVSHLMFADDLLLFGEAKEEQMKCVIDTLNKFCTLSGQEVSQEKTSIYF 76

Query: 299 SESVEAHMRRTLVDLSCFRETDTLGKYLGVSLNRRAPKKADFQYLIDQVNSKLSTWKAKH 478
           S++V   MR  L+ +S F+E +++G+YLGV L  RAPK+ DFQYL+DQV +KL+ WKAK 
Sbjct: 77  SKNVSREMRNKLLRISGFKEANSMGRYLGVPLLGRAPKRNDFQYLVDQVETKLAGWKAKQ 136

Query: 479 LSFIGCVTLTKPVLEPLPIYAMMIAAIPKACLHEIQKMQRS 601
           LSF G VTL K VLE +PIY MM   IPK CL +IQ++QRS
Sbjct: 137 LSFAGRVTLAKSVLEAIPIYPMMTTRIPKTCLSDIQRIQRS 177



 Score = 59.7 bits (143), Expect(2) = 4e-46
 Identities = 25/45 (55%), Positives = 30/45 (66%)
 Frame = +1

Query: 604 IWGDDANNKNLHAVSWEVITKPKKFGGLGFQKLEVVNTTCTMKLG 738
           IWGD  N +  HAVSWE +T PK  GGLG + LE +N  C +KLG
Sbjct: 179 IWGDTENGRKFHAVSWERVTTPKWMGGLGLRNLEYMNLACLIKLG 223


>gb|PNY02920.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1010

 Score =  156 bits (395), Expect(2) = 5e-46
 Identities = 82/161 (50%), Positives = 113/161 (70%), Gaps = 7/161 (4%)
 Frame = +2

Query: 140 W*ALTAGRYETIISRLMFAYDIILFGQATEAHIRMLL-------VWVG*LVSNSKTIIYF 298
           W  + AGR   ++S LMFA D++LFG+ATE  ++ ++       +  G  VS+ KT + F
Sbjct: 494 WRGIKAGRTGPMVSHLMFADDLLLFGEATEKQMKCVIDILQRFCIISGQEVSHEKTSVLF 553

Query: 299 SESVEAHMRRTLVDLSCFRETDTLGKYLGVSLNRRAPKKADFQYLIDQVNSKLSTWKAKH 478
           S++V   MR  L+ +S F+ET   GKYLGV L  RAPK+AD+QYLIDQV++KLS WKA+ 
Sbjct: 554 SKNVRRGMRDKLLHMSGFKETTDFGKYLGVPLIGRAPKRADYQYLIDQVSNKLSAWKARQ 613

Query: 479 LSFIGCVTLTKPVLEPLPIYAMMIAAIPKACLHEIQKMQRS 601
           LSF G VTL K VLE +PIY MM + IPK+CL++IQ++QR+
Sbjct: 614 LSFAGRVTLAKSVLEAVPIYPMMTSKIPKSCLNDIQRIQRN 654



 Score = 57.0 bits (136), Expect(2) = 5e-46
 Identities = 23/45 (51%), Positives = 30/45 (66%)
 Frame = +1

Query: 604 IWGDDANNKNLHAVSWEVITKPKKFGGLGFQKLEVVNTTCTMKLG 738
           IWG+  N +  HAV W  +TKPK  GGLG + LE++N  C +KLG
Sbjct: 656 IWGEYDNVRKYHAVKWSDLTKPKSMGGLGIRNLEIMNQACLLKLG 700


>gb|PNY03121.1| ribonuclease H, partial [Trifolium pratense]
          Length = 952

 Score =  157 bits (396), Expect(2) = 5e-46
 Identities = 80/160 (50%), Positives = 110/160 (68%), Gaps = 7/160 (4%)
 Frame = +2

Query: 140 W*ALTAGRYETIISRLMFAYDIILFGQATEAHIRMLLVWV-------G*LVSNSKTIIYF 298
           W  + AGR   ++S LMFA D++LFG+A+E  I  ++  +       G  VS  KT + F
Sbjct: 272 WKGIKAGRNGPMVSHLMFADDLLLFGEASEQQIWCVMDTLQKFCNMSGQEVSQDKTSVLF 331

Query: 299 SESVEAHMRRTLVDLSCFRETDTLGKYLGVSLNRRAPKKADFQYLIDQVNSKLSTWKAKH 478
           S++V  +M+  ++ +S F+ET   GKYLGV LN RAPK+ADFQYL+DQVN KLS WKAKH
Sbjct: 332 SKNVGRNMKSKILSMSGFKETTDFGKYLGVPLNGRAPKRADFQYLLDQVNMKLSNWKAKH 391

Query: 479 LSFIGCVTLTKPVLEPLPIYAMMIAAIPKACLHEIQKMQR 598
           LSF G VTL K V+E +P+Y +M   IPK+CL +I+++QR
Sbjct: 392 LSFAGRVTLAKSVIEAVPVYPLMSTKIPKSCLEDIERLQR 431



 Score = 56.6 bits (135), Expect(2) = 5e-46
 Identities = 23/44 (52%), Positives = 29/44 (65%)
 Frame = +1

Query: 604 IWGDDANNKNLHAVSWEVITKPKKFGGLGFQKLEVVNTTCTMKL 735
           IWGD    +  HAV WE +T PK  GGLG +KLE++N  C +KL
Sbjct: 434 IWGDTEQKRRYHAVGWEKLTVPKWMGGLGLRKLEIMNKACLLKL 477


>gb|PNY14273.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1048

 Score =  151 bits (382), Expect(2) = 8e-46
 Identities = 84/161 (52%), Positives = 107/161 (66%), Gaps = 7/161 (4%)
 Frame = +2

Query: 140  W*ALTAGRYETIISRLMFAYDIILFGQATEAHIRMLLVWV-------G*LVSNSKTIIYF 298
            W  + AGR    IS LMFA D+ILF +A    +R++L  +       G  VS+ KT I F
Sbjct: 667  WKPMRAGRNGPFISHLMFADDLILFAEANTTQMRVVLDTLNQFCQLSGQQVSHEKTSIMF 726

Query: 299  SESVEAHMRRTLVDLSCFRETDTLGKYLGVSLNRRAPKKADFQYLIDQVNSKLSTWKAKH 478
            S +V + MR  L  LS F E  +LGKYLGV L  RAPK++D+ YLI+QV +KLS WKAK 
Sbjct: 727  SRNVCSQMREELTGLSGFNEASSLGKYLGVPLVGRAPKRSDYNYLINQVKTKLSAWKAKQ 786

Query: 479  LSFIGCVTLTKPVLEPLPIYAMMIAAIPKACLHEIQKMQRS 601
            LSF G VTL+K V+E +PIY MM   IPKACL+E+QK+QR+
Sbjct: 787  LSFAGRVTLSKSVIEAIPIYPMMTNLIPKACLNELQKIQRA 827



 Score = 61.2 bits (147), Expect(2) = 8e-46
 Identities = 25/48 (52%), Positives = 33/48 (68%)
 Frame = +1

Query: 595 KILIWGDDANNKNLHAVSWEVITKPKKFGGLGFQKLEVVNTTCTMKLG 738
           +  IWGD+  N+  HAVSW+ +TKPK  GGLG ++L  +N  C MKLG
Sbjct: 826 RAFIWGDEDGNRKYHAVSWDNVTKPKALGGLGIRRLVHMNKACLMKLG 873


>gb|PNX75251.1| ribonuclease H, partial [Trifolium pratense]
          Length = 800

 Score =  154 bits (389), Expect(2) = 1e-45
 Identities = 81/161 (50%), Positives = 110/161 (68%), Gaps = 7/161 (4%)
 Frame = +2

Query: 140  W*ALTAGRYETIISRLMFAYDIILFGQATEAHIRMLLVWV-------G*LVSNSKTIIYF 298
            W  + AGR   ++S LMFA D++LFG+A E  ++ ++  +       G  VS  KT IYF
Sbjct: 578  WRGIKAGRNGPMVSHLMFADDLLLFGEAKEEQMQCVINTLNNFCNLSGQEVSQEKTSIYF 637

Query: 299  SESVEAHMRRTLVDLSCFRETDTLGKYLGVSLNRRAPKKADFQYLIDQVNSKLSTWKAKH 478
            S++    +R  L+ +S F+ET +LG+YLGV L  RAPK+ DFQYL+DQV +KLS WKAK 
Sbjct: 638  SKNASREIRNKLLRISGFKETSSLGRYLGVPLLGRAPKRNDFQYLVDQVETKLSGWKAKQ 697

Query: 479  LSFIGCVTLTKPVLEPLPIYAMMIAAIPKACLHEIQKMQRS 601
            LSF G VTL K VLE +PIY MM   IPK+CL++IQ++QR+
Sbjct: 698  LSFAGRVTLAKSVLEAIPIYPMMTTKIPKSCLNDIQRIQRN 738



 Score = 57.8 bits (138), Expect(2) = 1e-45
 Identities = 23/45 (51%), Positives = 30/45 (66%)
 Frame = +1

Query: 604 IWGDDANNKNLHAVSWEVITKPKKFGGLGFQKLEVVNTTCTMKLG 738
           IWGD  + +  HAVSWE +T PK  GGLG + +E +N  C +KLG
Sbjct: 740 IWGDSESGRKFHAVSWEKVTTPKWMGGLGLRNMEYMNQACLIKLG 784


>gb|PNY13536.1| ribonuclease H [Trifolium pratense]
          Length = 987

 Score =  156 bits (395), Expect(2) = 3e-45
 Identities = 87/160 (54%), Positives = 107/160 (66%), Gaps = 7/160 (4%)
 Frame = +2

Query: 140  W*ALTAGRYETIISRLMFAYDIILFGQATEAHIRMLLVWVG*L-------VSNSKTIIYF 298
            W  + AGR   +IS LMFA D+ILF +A    I ++L  VG         +S+ KT I F
Sbjct: 635  WKPMRAGRNGPLISHLMFADDLILFAEAKMDQIDVVLKIVGQFCQMSGQQISHEKTSIMF 694

Query: 299  SESVEAHMRRTLVDLSCFRETDTLGKYLGVSLNRRAPKKADFQYLIDQVNSKLSTWKAKH 478
            S +V  H+R  LV  S F E  +LGKYLGV L  RAPK++D+ YLI+QV +KLS WKAK 
Sbjct: 695  SRNVSLHVREALVRRSGFNEALSLGKYLGVPLVGRAPKRSDYNYLINQVKNKLSNWKAKQ 754

Query: 479  LSFIGCVTLTKPVLEPLPIYAMMIAAIPKACLHEIQKMQR 598
            LSF G VTL+K V+E +PIY MM  AIPKACLHEIQK+QR
Sbjct: 755  LSFAGRVTLSKAVIEAIPIYPMMTTAIPKACLHEIQKIQR 794



 Score = 54.3 bits (129), Expect(2) = 3e-45
 Identities = 22/44 (50%), Positives = 30/44 (68%)
 Frame = +1

Query: 604 IWGDDANNKNLHAVSWEVITKPKKFGGLGFQKLEVVNTTCTMKL 735
           IWG++   +  HAV+WE +TKPK  GGLG ++L  +N  C MKL
Sbjct: 797 IWGEENGGRKYHAVNWENVTKPKVLGGLGIRRLVHMNKACLMKL 840


>gb|PNY15946.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1195

 Score =  152 bits (384), Expect(2) = 4e-45
 Identities = 81/161 (50%), Positives = 110/161 (68%), Gaps = 7/161 (4%)
 Frame = +2

Query: 140  W*ALTAGRYETIISRLMFAYDIILFGQATEAHIRMLLVWV-------G*LVSNSKTIIYF 298
            W  + AGR   +IS LMFA D++LF QA+E  +R ++  +       G  VS  KT I F
Sbjct: 636  WKPMKAGRSGPLISHLMFADDLLLFAQASEDQMREVMHILDIFCSMSGQEVSQEKTSIMF 695

Query: 299  SESVEAHMRRTLVDLSCFRETDTLGKYLGVSLNRRAPKKADFQYLIDQVNSKLSTWKAKH 478
            S++V+ H R  L ++S FR T ++GKYLGV L  RAP+K+D+ YL+ QV SKLS+WKAK 
Sbjct: 696  SKNVQQHTRDQLANISGFRVTQSMGKYLGVPLVGRAPRKSDYNYLLAQVKSKLSSWKAKQ 755

Query: 479  LSFIGCVTLTKPVLEPLPIYAMMIAAIPKACLHEIQKMQRS 601
            LS  G +TL+K ++E +PIY MM A IPK+CL ++QKMQRS
Sbjct: 756  LSLAGRITLSKAIIEAIPIYPMMTANIPKSCLQQLQKMQRS 796



 Score = 58.2 bits (139), Expect(2) = 4e-45
 Identities = 24/45 (53%), Positives = 30/45 (66%)
 Frame = +1

Query: 604 IWGDDANNKNLHAVSWEVITKPKKFGGLGFQKLEVVNTTCTMKLG 738
           IWG+  N +  HAVSW+ IT PK  GGLG ++L  +N  C MKLG
Sbjct: 798 IWGEAENERRYHAVSWDTITLPKSLGGLGIRRLHNMNKACLMKLG 842


>gb|PNX97265.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1220

 Score =  149 bits (377), Expect(2) = 9e-45
 Identities = 83/161 (51%), Positives = 109/161 (67%), Gaps = 7/161 (4%)
 Frame = +2

Query: 140  W*ALTAGRYETIISRLMFAYDIILFGQATEAHIRMLLVWV-------G*LVSNSKTIIYF 298
            W  + AGR   +IS LMFA D+ILF +A+   + ++L  +       G  VS  KT I F
Sbjct: 698  WRPMRAGRNGPLISHLMFADDLILFAEASVDQMTVVLNIIDQFCQLSGQKVSQEKTNIMF 757

Query: 299  SESVEAHMRRTLVDLSCFRETDTLGKYLGVSLNRRAPKKADFQYLIDQVNSKLSTWKAKH 478
            S++V    + TLV +S F E  +LGKYLGV L  RAPK++D+ YLI+QV +KLS WKAKH
Sbjct: 758  SKNVCPRTKETLVMMSGFIEATSLGKYLGVPLVGRAPKRSDYNYLINQVKTKLSAWKAKH 817

Query: 479  LSFIGCVTLTKPVLEPLPIYAMMIAAIPKACLHEIQKMQRS 601
            LSF G VTL+K V+E +PIY MM   IPK+CL+EIQK+QR+
Sbjct: 818  LSFAGRVTLSKAVIEAIPIYPMMTTTIPKSCLNEIQKIQRA 858



 Score = 59.7 bits (143), Expect(2) = 9e-45
 Identities = 24/48 (50%), Positives = 32/48 (66%)
 Frame = +1

Query: 595  KILIWGDDANNKNLHAVSWEVITKPKKFGGLGFQKLEVVNTTCTMKLG 738
            +  IWGDD   +  HAVSWE +T PK +GGLG ++L  +N  C MK+G
Sbjct: 857  RAFIWGDDNGGRKYHAVSWENVTLPKAYGGLGMRRLVQMNKACLMKMG 904


>dbj|GAU38338.1| hypothetical protein TSUD_61990 [Trifolium subterraneum]
          Length = 813

 Score =  150 bits (380), Expect(2) = 3e-44
 Identities = 80/160 (50%), Positives = 109/160 (68%), Gaps = 7/160 (4%)
 Frame = +2

Query: 140 W*ALTAGRYETIISRLMFAYDIILFGQATEAHIRMLLVWV-------G*LVSNSKTIIYF 298
           W  + +G    +IS  MFA D++LFG+A+E  +R ++  +       G  VS +KT + F
Sbjct: 169 WKGIKSGSNGPMISHRMFADDLLLFGEASEFQMRCVVDSLQQFYNMSGQQVSQAKTSVLF 228

Query: 299 SESVEAHMRRTLVDLSCFRETDTLGKYLGVSLNRRAPKKADFQYLIDQVNSKLSTWKAKH 478
           S++VE  MR  L+++S F+ET   GKYLGVSL+ RAP+++DFQYLIDQV+ KLS WKA H
Sbjct: 229 SQNVERGMRNKLLNISGFKETSNFGKYLGVSLHGRAPRRSDFQYLIDQVSKKLSMWKATH 288

Query: 479 LSFIGCVTLTKPVLEPLPIYAMMIAAIPKACLHEIQKMQR 598
           LSF G V L K V+E +P YAMM   I KACL +IQ++QR
Sbjct: 289 LSFAGRVALAKSVIEAVPTYAMMSTLILKACLEDIQRLQR 328



 Score = 56.6 bits (135), Expect(2) = 3e-44
 Identities = 22/44 (50%), Positives = 30/44 (68%)
 Frame = +1

Query: 604 IWGDDANNKNLHAVSWEVITKPKKFGGLGFQKLEVVNTTCTMKL 735
           IWGD  N +  +A+ W+ IT PKK GGLG +KL+++N  C  KL
Sbjct: 331 IWGDTENKRRFYAIGWDRITVPKKMGGLGLRKLDIMNKACLCKL 374


>dbj|GAU26489.1| hypothetical protein TSUD_361220 [Trifolium subterraneum]
          Length = 577

 Score =  145 bits (367), Expect(2) = 8e-44
 Identities = 81/161 (50%), Positives = 103/161 (63%), Gaps = 7/161 (4%)
 Frame = +2

Query: 137 VW*ALTAGRYETIISRLMFAYDIILFGQATEAHIRMLLVWV-------G*LVSNSKTIIY 295
           +W  L AGR    +S LMFA D++LFG+ATE  +  L+  +       G  VS  KT I 
Sbjct: 16  LWKTLRAGRNGMNVSHLMFADDLLLFGEATENQMDCLMNILTKFCSMSGQEVSYEKTSIL 75

Query: 296 FSESVEAHMRRTLVDLSCFRETDTLGKYLGVSLNRRAPKKADFQYLIDQVNSKLSTWKAK 475
           FS++V  H+R  LV  S FRET+ LGKYLGV L   AP+++DFQY+I+QV++KL+ WK  
Sbjct: 76  FSKNVSRHIRNKLVQKSGFRETNHLGKYLGVPLTGNAPRRSDFQYIINQVSAKLARWKVN 135

Query: 476 HLSFIGCVTLTKPVLEPLPIYAMMIAAIPKACLHEIQKMQR 598
            LSF G VTL K V+E  PIY MM   IPK CL EI  +QR
Sbjct: 136 QLSFAGRVTLAKSVIEATPIYPMMTNRIPKGCLEEINMLQR 176



 Score = 60.5 bits (145), Expect(2) = 8e-44
 Identities = 22/45 (48%), Positives = 32/45 (71%)
 Frame = +1

Query: 604 IWGDDANNKNLHAVSWEVITKPKKFGGLGFQKLEVVNTTCTMKLG 738
           IWG+   N   HA+ WE +T+PK+FGGLG ++L+ +N  C +KLG
Sbjct: 179 IWGETEGNNKYHAIRWEDVTRPKRFGGLGLRRLDTMNQACLLKLG 223


>gb|PNX92647.1| ribonuclease H, partial [Trifolium pratense]
          Length = 350

 Score =  147 bits (371), Expect(2) = 1e-43
 Identities = 83/161 (51%), Positives = 108/161 (67%), Gaps = 7/161 (4%)
 Frame = +2

Query: 140 W*ALTAGRYETIISRLMFAYDIILFGQATEAHIRMLL-------VWVG*LVSNSKTIIYF 298
           W  + AGR   ++S LMFA D++LFG+A+E  +R ++       +  G  VS  KT I F
Sbjct: 9   WRGIKAGRSGPMVSHLMFADDLLLFGEASEKQMRCVMNILNKFCLMSGQEVSQEKTSILF 68

Query: 299 SESVEAHMRRTLVDLSCFRETDTLGKYLGVSLNRRAPKKADFQYLIDQVNSKLSTWKAKH 478
           S++V + MR  L+ LS FRE   L KYLGV L  RAPKKAD+QYLIDQV++KL  WKA+ 
Sbjct: 69  SKNVNSGMRDKLLHLSGFREAYDLDKYLGVPLIGRAPKKADYQYLIDQVSNKLVKWKARQ 128

Query: 479 LSFIGCVTLTKPVLEPLPIYAMMIAAIPKACLHEIQKMQRS 601
           LSF G VTL K VLE +P Y MM + IP++ L EIQK+QR+
Sbjct: 129 LSFAGRVTLAKSVLEAVPTYPMMTSRIPQSYLDEIQKIQRN 169



 Score = 58.2 bits (139), Expect(2) = 1e-43
 Identities = 23/45 (51%), Positives = 30/45 (66%)
 Frame = +1

Query: 604 IWGDDANNKNLHAVSWEVITKPKKFGGLGFQKLEVVNTTCTMKLG 738
           IWGD  N +  HAV W V+T PK  GGLG ++L+ +N  C +KLG
Sbjct: 171 IWGDTENVRRYHAVRWSVVTMPKDMGGLGLRRLDAMNKACLLKLG 215


>dbj|GAU45807.1| hypothetical protein TSUD_87100 [Trifolium subterraneum]
          Length = 862

 Score =  147 bits (370), Expect(2) = 5e-43
 Identities = 77/160 (48%), Positives = 107/160 (66%), Gaps = 7/160 (4%)
 Frame = +2

Query: 140 W*ALTAGRYETIISRLMFAYDIILFGQATEAHIRMLL-------VWVG*LVSNSKTIIYF 298
           W  + AGR   IIS LMFA D++L+G+AT  H++ ++       +  G  VS  KT I F
Sbjct: 374 WVGIRAGRAGPIISHLMFADDLLLYGKATAEHMQCVIKVLDDFCILSGQKVSQEKTSILF 433

Query: 299 SESVEAHMRRTLVDLSCFRETDTLGKYLGVSLNRRAPKKADFQYLIDQVNSKLSTWKAKH 478
           S++V   ++  L ++S FR T +LGKYLGV L  RAPK+ D+QY+I+Q+ SKL+ WKAK+
Sbjct: 434 SKNVPQEVKTMLQNISGFRVTSSLGKYLGVPLTGRAPKRGDYQYIIEQLQSKLTAWKAKN 493

Query: 479 LSFIGCVTLTKPVLEPLPIYAMMIAAIPKACLHEIQKMQR 598
           LSF G V L K V+E +PIY MM A IP + L E+Q++QR
Sbjct: 494 LSFAGRVKLAKSVMEAMPIYPMMTAIIPNSILQEVQRLQR 533



 Score = 56.6 bits (135), Expect(2) = 5e-43
 Identities = 24/45 (53%), Positives = 31/45 (68%)
 Frame = +1

Query: 604 IWGDDANNKNLHAVSWEVITKPKKFGGLGFQKLEVVNTTCTMKLG 738
           IWGD  +    HAV WE+I+ PK  GGLG ++LE++N  C MKLG
Sbjct: 536 IWGDSIHGIKHHAVRWELISTPKYRGGLGLRRLEIMNKACLMKLG 580


>gb|PNX91173.1| ribonuclease H, partial [Trifolium pratense]
          Length = 390

 Score =  148 bits (373), Expect(2) = 6e-43
 Identities = 82/160 (51%), Positives = 108/160 (67%), Gaps = 7/160 (4%)
 Frame = +2

Query: 140 W*ALTAGRYETIISRLMFAYDIILFGQATEAHIRMLLVWV-------G*LVSNSKTIIYF 298
           W A+ AGR    IS LMFA D++LFG+ATE  +   +  +       G +VS  KT+IYF
Sbjct: 47  WMAMRAGRDGPHISHLMFADDLLLFGKATEKQMECTMRTLDKFSKMSGQVVSLEKTMIYF 106

Query: 299 SESVEAHMRRTLVDLSCFRETDTLGKYLGVSLNRRAPKKADFQYLIDQVNSKLSTWKAKH 478
           S++V+A  RR L   S  +ET  +GKYLGV L   AP+K DFQ+LID+V +KLS WKA  
Sbjct: 107 SKNVDAQTRRRLARQSGCQETSNIGKYLGVPLIGDAPRKRDFQHLIDKVRNKLSGWKANQ 166

Query: 479 LSFIGCVTLTKPVLEPLPIYAMMIAAIPKACLHEIQKMQR 598
           LSF G VTL+K V++ +P+Y+MM   IPK+CL EIQK+QR
Sbjct: 167 LSFAGRVTLSKSVIQAIPMYSMMTTLIPKSCLLEIQKLQR 206



 Score = 55.1 bits (131), Expect(2) = 6e-43
 Identities = 21/45 (46%), Positives = 28/45 (62%)
 Frame = +1

Query: 604 IWGDDANNKNLHAVSWEVITKPKKFGGLGFQKLEVVNTTCTMKLG 738
           +WGDD N + LH V W  +T PK+ GGL  + +  +N  C MKLG
Sbjct: 209 VWGDDENKRRLHTVRWSTLTIPKELGGLAVRDMSKMNLACIMKLG 253


>dbj|GAU34270.1| hypothetical protein TSUD_321160 [Trifolium subterraneum]
          Length = 1044

 Score =  147 bits (372), Expect(2) = 1e-42
 Identities = 80/161 (49%), Positives = 106/161 (65%), Gaps = 7/161 (4%)
 Frame = +2

Query: 140 W*ALTAGRYETIISRLMFAYDIILFGQATEAHIRMLLVWV-------G*LVSNSKTIIYF 298
           W  + AGR   +IS LMFA D++LFG A+   +R ++  +       G  VS  KT + F
Sbjct: 494 WRGIKAGRNGPMISHLMFADDLLLFGSASVDQMRCVVDSLNLFCSMSGQEVSQDKTSVMF 553

Query: 299 SESVEAHMRRTLVDLSCFRETDTLGKYLGVSLNRRAPKKADFQYLIDQVNSKLSTWKAKH 478
           S +VE  +R  L+ ++ ++ET   GKYLGV L+ RA KKADFQYL+DQ + KLS WKA H
Sbjct: 554 SRNVERSLRTKLLSITGYKETSNFGKYLGVPLHGRALKKADFQYLLDQASMKLSLWKANH 613

Query: 479 LSFIGCVTLTKPVLEPLPIYAMMIAAIPKACLHEIQKMQRS 601
           LSF G VTL K V+E +P Y MM + IPKACL EIQ++QR+
Sbjct: 614 LSFAGRVTLAKSVIEAIPNYPMMSSLIPKACLDEIQRIQRN 654



 Score = 54.7 bits (130), Expect(2) = 1e-42
 Identities = 22/45 (48%), Positives = 28/45 (62%)
 Frame = +1

Query: 604 IWGDDANNKNLHAVSWEVITKPKKFGGLGFQKLEVVNTTCTMKLG 738
           IWGD    +  HA+ WE I   K  GGLG +KL+++N TC  KLG
Sbjct: 656 IWGDTEQKRKYHAIGWEKIVVTKDMGGLGMRKLDIMNKTCLCKLG 700


>dbj|GAU35481.1| hypothetical protein TSUD_384360 [Trifolium subterraneum]
          Length = 663

 Score =  144 bits (362), Expect(2) = 1e-42
 Identities = 75/160 (46%), Positives = 108/160 (67%), Gaps = 7/160 (4%)
 Frame = +2

Query: 140 W*ALTAGRYETIISRLMFAYDIILFGQATEAHIRMLL-------VWVG*LVSNSKTIIYF 298
           W  + AGR   IIS LMFA D++L+G+AT  H++ ++       +  G +VS  KT I F
Sbjct: 26  WVGIRAGRAGPIISHLMFADDLLLYGKATVEHMQCVIKVLDDFCILSGQMVSQEKTSILF 85

Query: 299 SESVEAHMRRTLVDLSCFRETDTLGKYLGVSLNRRAPKKADFQYLIDQVNSKLSTWKAKH 478
           S++V   ++  L ++S FR T +L KYLGV L  RAPK+ D+QY+I+Q+ SKL+ WKA++
Sbjct: 86  SKNVPQEVKTMLQNISGFRVTSSLEKYLGVPLTGRAPKRGDYQYIIEQLQSKLTAWKAEN 145

Query: 479 LSFIGCVTLTKPVLEPLPIYAMMIAAIPKACLHEIQKMQR 598
           LSF G V L+K V+E +PIY MM A IP + L E+Q++QR
Sbjct: 146 LSFAGRVKLSKSVMEAMPIYPMMTAIIPNSILQEVQRLQR 185



 Score = 58.5 bits (140), Expect(2) = 1e-42
 Identities = 24/45 (53%), Positives = 32/45 (71%)
 Frame = +1

Query: 604 IWGDDANNKNLHAVSWEVITKPKKFGGLGFQKLEVVNTTCTMKLG 738
           IWGD  + +  HAV WE+I+ PK  GGLG ++LE++N  C MKLG
Sbjct: 188 IWGDSIHGRKHHAVRWELISTPKYRGGLGLRRLEIMNKACLMKLG 232