BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus22_contig00029123
         (1235 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|GAU13081.1| hypothetical protein TSUD_173810 [Trifolium subt...    84   3e-20
dbj|GAU31266.1| hypothetical protein TSUD_153410 [Trifolium subt...    77   5e-20
gb|PNY12955.1| retrovirus-related Pol polyprotein from transposo...    75   9e-19
gb|PNX93258.1| histone deacetylase, partial [Trifolium pratense]       73   1e-18
gb|PNY08092.1| histone deacetylase [Trifolium pratense]                78   2e-18
gb|PNX92906.1| retrovirus-related Pol polyprotein from transposo...    72   2e-18
gb|KYP71160.1| Retrovirus-related Pol polyprotein from transposo...    73   3e-18
dbj|GAU43783.1| hypothetical protein TSUD_378080 [Trifolium subt...    65   3e-18
gb|KYP71144.1| Retrovirus-related Pol polyprotein from transposo...    73   3e-18
gb|KYP46114.1| Retrovirus-related Pol polyprotein from transposo...    97   4e-18
gb|PNX91972.1| retrovirus-related Pol polyprotein from transposo...    80   4e-18
gb|KYP67039.1| Retrovirus-related Pol polyprotein from transposo...    97   6e-18
gb|KYP61342.1| Retrovirus-related Pol polyprotein from transposo...    97   6e-18
ref|XP_009368272.2| PREDICTED: uncharacterized protein LOC103957...    71   1e-16
ref|XP_014622404.1| PREDICTED: uncharacterized mitochondrial pro...    61   2e-16
gb|PNX77046.1| retrovirus-related Pol polyprotein from transposo...    66   3e-16
gb|PNX84939.1| retrovirus-related Pol polyprotein from transposo...    66   3e-16
gb|PNX77250.1| retrovirus-related Pol polyprotein from transposo...    66   3e-16
gb|PNX76161.1| retrovirus-related Pol polyprotein from transposo...    66   3e-16
gb|PNX92571.1| histone deacetylase [Trifolium pratense]                90   2e-15

>dbj|GAU13081.1| hypothetical protein TSUD_173810 [Trifolium subterraneum]
          Length = 1295

 Score = 83.6 bits (205), Expect(2) = 3e-20
 Identities = 68/199 (34%), Positives = 99/199 (49%), Gaps = 20/199 (10%)
 Frame = +1

Query: 373  ASGNIKRT*A--VAKGFH*KEGCDGKLLSGG*TS--SYKAYLTVALTNKWPLKLVEVSNA 540
            A G I +  A  VAKGFH   G D            + +  L++ ++ KWPLK ++V+NA
Sbjct: 955  ADGTINKYKARLVAKGFHQVHGFDFNETFSPMIKPITIRLILSLVVSYKWPLKQLDVNNA 1014

Query: 541  FLQGYLKGDE*MV*LLYDTHSGV*K**HXXXXXXXXXXXXMVENKALHA-------WYER 699
            FL G L+ +  MV L                            NKAL+        W++R
Sbjct: 1015 FLNGLLEEEVYMVQL--------------PGFEVPDANLVCKLNKALYGLKQAPRQWFDR 1060

Query: 700  *ASILINFGFQ----QPKFYSWYSN*-----IQDVEDILITGTSLPLV*QLVTKLNILFA 852
              + L+ FGFQ     P  +++  N      +  V+DI+ITG+S  LV  LV KL+ +F+
Sbjct: 1061 LTTALLQFGFQASKCDPSLFTYTKNRQVVYLLVYVDDIIITGSSSTLVQTLVQKLDSVFS 1120

Query: 853  LKQLGDLDFFLGIKLNMLP 909
            LKQLGDL++FLGI++  LP
Sbjct: 1121 LKQLGDLEYFLGIEVKQLP 1139



 Score = 45.1 bits (105), Expect(2) = 3e-20
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 19/93 (20%)
 Frame = +2

Query: 1013 SIKLSRYGSDFVEDPALHRSIVGEVQHVTVTKP----SSGSLILFLEMKFVN-------- 1156
            S KLS+ GS  + D  L+RS+VG +Q+ T+T+P    +   +  F+   F +        
Sbjct: 1173 SCKLSKVGSAGMSDTTLYRSVVGSLQYATITRPEISFAVNKVCQFMSAPFESHWIAVKRI 1232

Query: 1157 -------LCHSHELQPASAMSPLSLKASCDTDW 1234
                   +    ++ P +   PL LK  CD DW
Sbjct: 1233 LRYLRGTIQFGLKISPTAVHHPLPLKVLCDADW 1265



 Score = 66.2 bits (160), Expect = 8e-08
 Identities = 55/165 (33%), Positives = 78/165 (47%), Gaps = 14/165 (8%)
 Frame = +2

Query: 206  PRLHPRLLLSEADPHTI**PLFPSCWKQAMQQEFDALLANQTWNLVPLP----LAARQWL 373
            P+ HP+LLL+  +P T    L    W  AM +EF+AL  NQTW LVPLP    +   +W+
Sbjct: 889  PKKHPKLLLTHTEPKTTKQALKDHKWFAAMIEEFEALKRNQTWTLVPLPQNRDVIGCKWV 948

Query: 374  -------QVAILK-ELKLLLRVFIEKKVVTAN--FSLVVKPVAIRLTSQWLLPTSGLLNW 523
                      I K + +L+ + F +      N  FS ++KP+ IRL    +L       W
Sbjct: 949  FRTKENADGTINKYKARLVAKGFHQVHGFDFNETFSPMIKPITIRL----ILSLVVSYKW 1004

Query: 524  SRLVMPSFKAT*REMSKWYSCCMIHIPGFENNDINLVCKLQKPFY 658
                +    A    + +     M+ +PGFE  D NLVCKL K  Y
Sbjct: 1005 PLKQLDVNNAFLNGLLE-EEVYMVQLPGFEVPDANLVCKLNKALY 1048


>dbj|GAU31266.1| hypothetical protein TSUD_153410 [Trifolium subterraneum]
          Length = 844

 Score = 76.6 bits (187), Expect(2) = 5e-20
 Identities = 61/186 (32%), Positives = 90/186 (48%), Gaps = 18/186 (9%)
 Frame = +1

Query: 403 VAKGFH*KEGCDGKLLSGG*TS--SYKAYLTVALTNKWPLKLVEVSNAFLQGYLKGDE*M 576
           VAKGFH K+G D            + +  L++ ++ KWP++ ++++NAFL G L  +  M
Sbjct: 400 VAKGFHQKQGFDFNETFSPVIKPVTIRLILSLGISYKWPIRQLDINNAFLNGSLDEEVYM 459

Query: 577 V*LLYDTHSGV*K**HXXXXXXXXXXXXMVENKALHA-------WYER*ASILINFGFQQ 735
           V                              NKAL+        W+++  + LI FGF  
Sbjct: 460 V--------------QPQGFESTDATLVCKLNKALYGLKQAPRQWFDKLTTTLIQFGFNA 505

Query: 736 PK------FYSWYSN*IQ---DVEDILITGTSLPLV*QLVTKLNILFALKQLGDLDFFLG 888
            K       YS  S  +     V+DI+I G+S  LV  LV KL+ +F+LKQLGDLD+FLG
Sbjct: 506 SKCDPSLFIYSQKSQVVYLLVYVDDIIIIGSSPTLVQHLVDKLDAVFSLKQLGDLDYFLG 565

Query: 889 IKLNML 906
           I++  L
Sbjct: 566 IEVKHL 571



 Score = 51.2 bits (121), Expect(2) = 5e-20
 Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 23/128 (17%)
 Frame = +2

Query: 920  GSLILSQAMYRRIY*TRLKW*LQMNFHSIAC----SIKLSRYGSDFVEDPALHRSIVGEV 1087
            GSL+L+Q  Y +    +       + + IA     S KLS+ GSD V D  L+RS+VG +
Sbjct: 574  GSLLLTQTKYIKDLLVKTN---MFDCNPIATPMMSSCKLSKVGSDNVADATLYRSVVGSL 630

Query: 1088 QHVTVTKPSSGSLILFLEMKFVNLCHSH-------------------ELQPASAMSPLSL 1210
            Q+ T+T+P     +  +         SH                   +L P +   PLS+
Sbjct: 631  QYATITRPEISFAVNKVCQFMPTPLESHWAAVKRILRYLKGTSFSGLKLFPTNIHHPLSI 690

Query: 1211 KASCDTDW 1234
            KA CD DW
Sbjct: 691  KAYCDADW 698


>gb|PNY12955.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Trifolium pratense]
          Length = 535

 Score = 75.5 bits (184), Expect(2) = 9e-19
 Identities = 54/168 (32%), Positives = 85/168 (50%), Gaps = 22/168 (13%)
 Frame = +1

Query: 475 KAYLTVALTNKWPLKLVEVSNAFLQGYLK-------------GDE*MV*LLYDTHSGV*K 615
           +  LT+A+T KWP++ ++V+NAFL G+L+              D+ +V  L+ +  G+  
Sbjct: 112 RVILTLAVTYKWPVQQIDVNNAFLNGWLQEEVYMKQPAGFESSDKSLVCKLHKSLYGL-- 169

Query: 616 **HXXXXXXXXXXXXMVENKALHAWYER*ASILINFGFQ----QPKFYSWYSN*-----I 768
                              +A  AWYER    L+  GF      P     Y        +
Sbjct: 170 ------------------KQAPRAWYERLTQALLQMGFVTSKCDPSLLIHYQQGACTYVL 211

Query: 769 QDVEDILITGTSLPLV*QLVTKLNILFALKQLGDLDFFLGIKLNMLPA 912
             V+DILITG++  L+  L+ KLN  FALKQLG++D+FLGI+++ +P+
Sbjct: 212 IYVDDILITGSAPHLIKDLIHKLNSQFALKQLGEVDYFLGIEVHHMPS 259



 Score = 48.1 bits (113), Expect(2) = 9e-19
 Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 20/126 (15%)
 Frame = +2

Query: 917  SGSLILSQAMYRRIY*TRLKW*LQMNFHS-IACSIKLSRYGSDFVEDPALHRSIVGEVQH 1093
            SG L+L+Q+ Y R    R          S +  S +LS++G+D + DP+L+RS VG +Q+
Sbjct: 259  SGGLLLNQSKYIRDLLCRTNMENCKPIGSPMVSSCRLSKFGTDAMSDPSLYRSTVGALQY 318

Query: 1094 VTVTKP----SSGSLILFLE-------------MKFV--NLCHSHELQPASAMSPLSLKA 1216
             T+T+P    S   +  F+              ++++     H   L P+ +  P SL+A
Sbjct: 319  ATLTRPDIAFSVNKVCQFMAHPLETHWKAVKRILRYLKGTTTHGLLLNPSPSGPPFSLRA 378

Query: 1217 SCDTDW 1234
              D DW
Sbjct: 379  YSDADW 384


>gb|PNX93258.1| histone deacetylase, partial [Trifolium pratense]
          Length = 1438

 Score = 73.2 bits (178), Expect(2) = 1e-18
 Identities = 54/161 (33%), Positives = 79/161 (49%), Gaps = 22/161 (13%)
 Frame = +1

Query: 484  LTVALTNKWPLKLVEVSNAFLQGYLK-------------GDE*MV*LLYDTHSGV*K**H 624
            LT+A+T KW +K ++++NAFL G L+              D+ +V  L+ +  G+     
Sbjct: 1028 LTLAVTYKWSVKQIDINNAFLNGLLQEEVYMTQPTGFESSDKSLVCKLHKSLYGL----- 1082

Query: 625  XXXXXXXXXXXXMVENKALHAWYER*ASILINFGFQQPKFYSWYSN*IQD---------V 777
                            +A  AWYER    L+  GF   K         Q          V
Sbjct: 1083 ---------------KQAPRAWYERLTQTLVQMGFSASKCDPSLLVHHQQGACTYVLIYV 1127

Query: 778  EDILITGTSLPLV*QLVTKLNILFALKQLGDLDFFLGIKLN 900
            +DILITG+S  L+  L+ KLNI FALKQLG++D+FLGI+++
Sbjct: 1128 DDILITGSSSQLIEDLIHKLNIQFALKQLGEIDYFLGIEVH 1168



 Score = 50.1 bits (118), Expect(2) = 1e-18
 Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 20/127 (15%)
 Frame = +2

Query: 914  SSGSLILSQAMYRRIY*TRLKW*LQMNFHS-IACSIKLSRYGSDFVEDPALHRSIVGEVQ 1090
            SSG+L+L+Q+ Y +    +          S +  + +LS++G+D + DP+L+RS VG +Q
Sbjct: 1171 SSGALLLNQSKYIKDLLVKTNMDNCKPIGSPMVSTCRLSKFGTDALSDPSLYRSTVGALQ 1230

Query: 1091 HVTVTKPSSGSLI----------LFLEMKFV---------NLCHSHELQPASAMSPLSLK 1213
            + T+T+P     +          L    K V          + H   L P+S+  P SL+
Sbjct: 1231 YATLTRPDIAFSVNKVCQYMAHPLESHWKAVKRILRYLQGTISHGLLLSPSSSSPPFSLR 1290

Query: 1214 ASCDTDW 1234
            A  D DW
Sbjct: 1291 AYSDADW 1297


>gb|PNY08092.1| histone deacetylase [Trifolium pratense]
          Length = 1339

 Score = 78.2 bits (191), Expect(2) = 2e-18
 Identities = 60/186 (32%), Positives = 94/186 (50%), Gaps = 18/186 (9%)
 Frame = +1

Query: 403  VAKGFH*KEGCDGKLLSGG*TS--SYKAYLTVALTNKWPLKLVEVSNAFLQGYLKGDE*M 576
            VAKGFH  +G D            + +  L++A++ KWPLK ++V+NAFL G L  +  M
Sbjct: 895  VAKGFHQLQGFDFNETFSPVIKPITIRLILSLAISYKWPLKQLDVNNAFLNGSLDEEVYM 954

Query: 577  V*LLYDTHSGV*K**HXXXXXXXXXXXXMVENKALHA-------WYER*ASILINFGFQ- 732
            V                              NKAL+        W+++  + L+ FGF+ 
Sbjct: 955  V--------------QPQGFEVSDSSLVCKLNKALYGLKQAPRQWFDKLTTTLLQFGFKA 1000

Query: 733  ---QPKFYSWYSN*-----IQDVEDILITGTSLPLV*QLVTKLNILFALKQLGDLDFFLG 888
                P  +++  +      +  V+DI+ITG+S+ LV  LV KL+ +F+LKQLG+LD+FLG
Sbjct: 1001 SKCDPSLFTYSKDRQVVYLLVYVDDIIITGSSITLVQTLVEKLDSVFSLKQLGNLDYFLG 1060

Query: 889  IKLNML 906
            I++  L
Sbjct: 1061 IEVQQL 1066



 Score = 44.3 bits (103), Expect(2) = 2e-18
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 19/93 (20%)
 Frame = +2

Query: 1013 SIKLSRYGSDFVEDPALHRSIVGEVQHVTVTKPSSGSLI--------LFLEMKFV----- 1153
            S KLS+ GS+ V D  L+RS+VG +Q+ T+T+P     +          LE  ++     
Sbjct: 1101 SCKLSKVGSNTVADTTLYRSVVGSLQYATITRPEISFAVNKVCQFMSAPLETHWIAVKRI 1160

Query: 1154 ------NLCHSHELQPASAMSPLSLKASCDTDW 1234
                   +    +L P     PL L+  CD DW
Sbjct: 1161 LRYLKGTIDQGLKLLPTDIHHPLPLRVFCDADW 1193


>gb|PNX92906.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1196

 Score = 71.6 bits (174), Expect(2) = 2e-18
 Identities = 61/194 (31%), Positives = 93/194 (47%), Gaps = 24/194 (12%)
 Frame = +1

Query: 403  VAKGFH*KEGCDGKLLSGG*T--SSYKAYLTVALTNKWPLKLVEVSNAFLQGYLK----- 561
            VAKGF    G D K         ++ +  LT+A+T KW ++ ++V+NAFL G L+     
Sbjct: 749  VAKGFLQTPGFDFKETFSPVIKPTTIRIILTLAVTYKWAVQQIDVNNAFLNGLLQEEVYM 808

Query: 562  --------GDE*MV*LLYDTHSGV*K**HXXXXXXXXXXXXMVENKALHAWYER*ASILI 717
                     D+ +V  L+ +  G+                     +A  AWYER    L+
Sbjct: 809  SQPSGFEVADKSLVCKLHKSLYGL--------------------KQAPRAWYERLTQTLL 848

Query: 718  NFGFQQPKFYSWYSN*IQD---------VEDILITGTSLPLV*QLVTKLNILFALKQLGD 870
              GF   K         Q          V+DILITG++  L+  L+ KLNI F+LKQLG+
Sbjct: 849  QMGFVASKCDPSLLIHHQQGACTYVLIYVDDILITGSAPHLIQDLIHKLNIQFSLKQLGE 908

Query: 871  LDFFLGIKLNMLPA 912
            +D+FLGI+++ +P+
Sbjct: 909  VDYFLGIEVHHMPS 922



 Score = 50.8 bits (120), Expect(2) = 2e-18
 Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 20/126 (15%)
 Frame = +2

Query: 917  SGSLILSQAMYRRIY*TRLKW*LQMNFHS-IACSIKLSRYGSDFVEDPALHRSIVGEVQH 1093
            SG L+L+Q+ Y +   +R K        S +  S +LS++G+D + DP+L+RS VG +Q+
Sbjct: 922  SGGLLLNQSKYIKDLLSRTKMENCKAIGSPMVSSCRLSKFGTDSMSDPSLYRSTVGALQY 981

Query: 1094 VTVTKP----SSGSLILFLE-------------MKFVNLCHSHEL--QPASAMSPLSLKA 1216
             T+T+P    S   +  F+              ++++    +H L   P+ +  P SL+A
Sbjct: 982  ATLTRPDISYSVNKVCQFMANPLETHWKAVKRILRYLKGTSNHGLLIHPSPSSPPFSLRA 1041

Query: 1217 SCDTDW 1234
              D DW
Sbjct: 1042 YSDADW 1047


>gb|KYP71160.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1268

 Score = 73.2 bits (178), Expect(2) = 3e-18
 Identities = 75/228 (32%), Positives = 104/228 (45%), Gaps = 22/228 (9%)
 Frame = +1

Query: 373  ASGNIKRT*A--VAKGFH*KEGCDGKLLSGG*TS--SYKAYLTVALTNKWPLKLVEVSNA 540
            A G+I +  A  VAKGFH   G D            + +  +T+ALT  W L  ++V+NA
Sbjct: 868  ADGSINKFKARLVAKGFHQVHGFDFHETFSPVIKPITIRIIITLALTYNWHLFQLDVNNA 927

Query: 541  FLQGYLKGDE*MV*LLYDTHSGV*K**HXXXXXXXXXXXXMVENKALHA-------WYER 699
            FL G L+    MV                              NKAL+        W++R
Sbjct: 928  FLNGILEETVYMV--------------QPPGFEVEDKSLVCKLNKALYGVKQAPRQWFDR 973

Query: 700  *ASILINFGFQQPKFY-SWYSN*IQD--------VEDILITGTSLPLV*QLVTKLNILFA 852
                L+ FGFQ  K   S +    QD        V+DI+ITG+S   + Q+  +LN  F+
Sbjct: 974  LKFTLLQFGFQASKCDPSLFMYKHQDQIIFLLVYVDDIIITGSSSQFIQQITDQLNSTFS 1033

Query: 853  LKQLGDLDFFLGIKLNMLP--AFLWFSYPISSYV*TDLLNKAEMVTAN 990
            LKQLG LD+FLGI++  LP  + L      S Y+  DLL+K  M  A+
Sbjct: 1034 LKQLGQLDYFLGIEIKHLPDKSLLMTQ---SKYI-RDLLHKTSMAEAH 1077



 Score = 48.5 bits (114), Expect(2) = 3e-18
 Identities = 25/72 (34%), Positives = 37/72 (51%)
 Frame = +2

Query: 1019 KLSRYGSDFVEDPALHRSIVGEVQHVTVTKPSSGSLILFLEMKFVNLCHSHELQPASAMS 1198
            KLS+ G+D   DP L+RS+VG +Q+ T+T+P        +      +C S          
Sbjct: 1088 KLSKSGADLFHDPTLYRSVVGALQYATLTRPE-------ISFAVNKVCQS--------WK 1132

Query: 1199 PLSLKASCDTDW 1234
            P S+ A CD+DW
Sbjct: 1133 PFSITAMCDSDW 1144



 Score = 62.0 bits (149), Expect = 2e-06
 Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 14/165 (8%)
 Frame = +2

Query: 206  PRLHPRLLLSEADPHTI**PLFPSCWKQAMQQEFDALLANQTWNLVPLP----------- 352
            P++ P L L+ ++P  +   L    W  AM+QE+ ALL N TW+LVPLP           
Sbjct: 802  PKMPPSLFLAHSEPKNVKQALSDPDWFSAMKQEYSALLQNHTWDLVPLPSNRQAVGCKWV 861

Query: 353  LAARQWLQVAILK-ELKLLLRVF--IEKKVVTANFSLVVKPVAIRLTSQWLLPTSGLLNW 523
               ++    +I K + +L+ + F  +        FS V+KP+ IR+    ++  +   NW
Sbjct: 862  FRVKENADGSINKFKARLVAKGFHQVHGFDFHETFSPVIKPITIRI----IITLALTYNW 917

Query: 524  SRLVMPSFKAT*REMSKWYSCCMIHIPGFENNDINLVCKLQKPFY 658
                +    A    + +  +  M+  PGFE  D +LVCKL K  Y
Sbjct: 918  HLFQLDVNNAFLNGILE-ETVYMVQPPGFEVEDKSLVCKLNKALY 961


>dbj|GAU43783.1| hypothetical protein TSUD_378080 [Trifolium subterraneum]
          Length = 796

 Score = 65.1 bits (157), Expect(2) = 3e-18
 Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 22/161 (13%)
 Frame = +1

Query: 484 LTVALTNKWPLKLVEVSNAFLQGYLK-------------GDE*MV*LLYDTHSGV*K**H 624
           LT+ +T KW ++ ++++NAFL G L+              D+ +V  L+ +  G+     
Sbjct: 410 LTLVVTYKWSVQQIDINNAFLNGVLQEEVYMTQPAGFEQSDKSLVCKLHKSLYGL----- 464

Query: 625 XXXXXXXXXXXXMVENKALHAWYER*ASILINFGFQQPKF---------YSWYSN*IQDV 777
                           +A  AWYE+    L+  GF + +          +   +  +  V
Sbjct: 465 ---------------KQAPRAWYEKLTQTLLQMGFTKSRCDPSLLVHHQHGACTYVLVYV 509

Query: 778 EDILITGTSLPLV*QLVTKLNILFALKQLGDLDFFLGIKLN 900
           +DILITG+   L+  L+ KLN  FALKQLG++D+FLGI+++
Sbjct: 510 DDILITGSDSHLIKDLIHKLNAKFALKQLGEVDYFLGIEVH 550



 Score = 56.6 bits (135), Expect(2) = 3e-18
 Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
 Frame = +2

Query: 917  SGSLILSQAMYRRIY*TRLKW*LQMNFHSIACSI----KLSRYGSDFVEDPALHRSIVGE 1084
            SG L+L Q+ Y +    + K     NF  I   +    KLS++G D + DP L+RS VG 
Sbjct: 554  SGGLLLHQSKYIKDLLVKTK---MENFKPIGSPMVSGYKLSKFGIDAMTDPTLYRSTVGA 610

Query: 1085 VQHVTVTKPSSGSLILFLEMKFVNLCHSHELQPASAMSPLSLKASCDTDW 1234
            +Q+ T+T+P      +   +    L H   LQP  +  P SL+A  D DW
Sbjct: 611  LQYATLTRPD-----IAYSVNKGTLHHGLLLQPCLSSPPFSLRAYSDADW 655


>gb|KYP71144.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 438

 Score = 73.2 bits (178), Expect(2) = 3e-18
 Identities = 75/228 (32%), Positives = 104/228 (45%), Gaps = 22/228 (9%)
 Frame = +1

Query: 373 ASGNIKRT*A--VAKGFH*KEGCDGKLLSGG*TS--SYKAYLTVALTNKWPLKLVEVSNA 540
           A G+I +  A  VAKGFH   G D            + +  +T+ALT  W L  ++V+NA
Sbjct: 38  ADGSINKFKARLVAKGFHQVHGFDFHETFSPVIKPITIRIIITLALTYNWHLFQLDVNNA 97

Query: 541 FLQGYLKGDE*MV*LLYDTHSGV*K**HXXXXXXXXXXXXMVENKALHA-------WYER 699
           FL G L+    MV                              NKAL+        W++R
Sbjct: 98  FLNGILEETVYMV--------------QPPGFEVEDKSLVCKLNKALYGVKQAPRQWFDR 143

Query: 700 *ASILINFGFQQPKFY-SWYSN*IQD--------VEDILITGTSLPLV*QLVTKLNILFA 852
               L+ FGFQ  K   S +    QD        V+DI+ITG+S   + Q+  +LN  F+
Sbjct: 144 LKFTLLQFGFQASKCDPSLFMYKHQDQIIFLLVYVDDIIITGSSSQFIQQITDQLNSTFS 203

Query: 853 LKQLGDLDFFLGIKLNMLP--AFLWFSYPISSYV*TDLLNKAEMVTAN 990
           LKQLG LD+FLGI++  LP  + L      S Y+  DLL+K  M  A+
Sbjct: 204 LKQLGQLDYFLGIEIKHLPDKSLLMTQ---SKYI-RDLLHKTSMAEAH 247



 Score = 48.5 bits (114), Expect(2) = 3e-18
 Identities = 25/72 (34%), Positives = 37/72 (51%)
 Frame = +2

Query: 1019 KLSRYGSDFVEDPALHRSIVGEVQHVTVTKPSSGSLILFLEMKFVNLCHSHELQPASAMS 1198
            KLS+ G+D   DP L+RS+VG +Q+ T+T+P        +      +C S          
Sbjct: 258  KLSKSGADLFHDPTLYRSVVGALQYATLTRPE-------ISFAVNKVCQS--------WK 302

Query: 1199 PLSLKASCDTDW 1234
            P S+ A CD+DW
Sbjct: 303  PFSITAMCDSDW 314


>gb|KYP46114.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 539

 Score = 97.4 bits (241), Expect = 4e-18
 Identities = 111/394 (28%), Positives = 170/394 (43%), Gaps = 50/394 (12%)
 Frame = +2

Query: 203  NPRLHPRLLLSEADPHTI**PLFPSCWKQAMQQEFDALLANQTWNLVPLPLAAR----QW 370
            NPR+HP L L+ ++P T+   L    W  AMQQE++AL+ N TW+LV LP   +    +W
Sbjct: 11   NPRIHPSLFLAHSEPKTVKQALADPNWFSAMQQEYNALMLNHTWDLVSLPSDRKAVGCKW 70

Query: 371  L---------QVAILKELKLLLRVF--IEKKVVTANFSLVVKPVAIRLTSQWLLPTSGLL 517
            +          +  LK  +L+ + F  +        FS V+KP+ IR+    +L  +   
Sbjct: 71   VFRVKENADGSIDKLK-ARLVAKGFHQVHGFDFHETFSPVIKPITIRI----ILTLALTN 125

Query: 518  NWSRLVMPSFKAT*REMSKWYSCCMIHIPGFENNDINLVCKLQKPFY-------*W---L 667
            NW+   +    A      +  +  M+  PGFE  D +LVCKL K  Y        W   L
Sbjct: 126  NWNLFQLDVNNAFLNGTLE-ETIYMVQPPGFEAGDKSLVCKLNKALYGLKQAPRQWFNKL 184

Query: 668  KTRPYMPGMRDKPAS*SILVFSSLNFTPGIATKFKMWRIF*SQVLLCRWYSNXXXXXXXX 847
            K      G +      S+  +     T  I        I  S  LL +  +N        
Sbjct: 185  KLTLTRFGFQASKCDPSLFQYQHQTHTIFILVYVDDIIITGSSSLLIQQITNQLDSIFSL 244

Query: 848  XXXXXWGT*ISFLELN*ICFLPSSGSLILSQAMYRR--IY*TRLKW*LQMNFHS----IA 1009
                  G+   FL +  +  LP   SL+L+Q+ Y R  ++ T L        H     + 
Sbjct: 245  KQL---GSLDYFLGIE-VKHLPDK-SLVLTQSKYIRDLLFKTNL-----AEAHGAPSPMF 294

Query: 1010 CSIKLSRYGSDFVEDPALHRSIVGEVQHVTVTKP----SSGSLILFLE------------ 1141
             + KLSR G+DF  DP   RS+VG +Q+ T+T+P    +   +  F+             
Sbjct: 295  SNCKLSRSGNDFFHDPTFFRSVVGALQYATLTRPEISFAVNKVCQFMATPLDSHWVAVKR 354

Query: 1142 -MKFV--NLCHSHELQPASAMSPLSLKASCDTDW 1234
             +K++   L +   +QPA+   P+SL A CD DW
Sbjct: 355  ILKYLKGTLSYGLHMQPAAVNGPISLTAFCDADW 388


>gb|PNX91972.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1516

 Score = 80.5 bits (197), Expect(2) = 4e-18
 Identities = 61/187 (32%), Positives = 94/187 (50%), Gaps = 18/187 (9%)
 Frame = +1

Query: 403  VAKGFH*KEGCDGKLLSGG*TS--SYKAYLTVALTNKWPLKLVEVSNAFLQGYLKGDE*M 576
            VAKGFH  +G D            + +  L++A++ KWPLK ++V+NAFL G L+ +  M
Sbjct: 1066 VAKGFHQIQGFDFNETFSPVIKPITIRLILSLAVSYKWPLKQLDVNNAFLNGLLEEEVYM 1125

Query: 577  V*LLYDTHSGV*K**HXXXXXXXXXXXXMVENKALHA-------WYER*ASILINFGFQ- 732
            +                              NKAL+        W++R  + L+ FGF+ 
Sbjct: 1126 I--------------QPPGFEEADENLVCKLNKALYGLKQAPRQWFDRLTTTLLQFGFKA 1171

Query: 733  ---QPKFYSWYSN*-----IQDVEDILITGTSLPLV*QLVTKLNILFALKQLGDLDFFLG 888
                P  +++  N      +  V+DI+ITG+S  LV  LV KL+ +F+LKQLGDL++FLG
Sbjct: 1172 SKCDPSLFTYSQNKQVVYLLVYVDDIIITGSSSTLVQTLVQKLDSIFSLKQLGDLEYFLG 1231

Query: 889  IKLNMLP 909
            I++   P
Sbjct: 1232 IEVKRSP 1238



 Score = 40.8 bits (94), Expect(2) = 4e-18
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 19/93 (20%)
 Frame = +2

Query: 1013 SIKLSRYGSDFVEDPALHRSIVGEVQHVTVTKPSSGSLI--------LFLEMKFV----- 1153
            S KLS+ GS  + D  L+RS+VG +Q+ T+T+P     +          LE  ++     
Sbjct: 1272 SCKLSKVGSTGMTDATLYRSVVGSLQYATITRPEISFAVNKVCQFMSAPLETHWIAVKRI 1331

Query: 1154 ------NLCHSHELQPASAMSPLSLKASCDTDW 1234
                   +    ++ P     PL L   CD DW
Sbjct: 1332 LRYLKGTIDFGLKISPTPVHHPLPLNVFCDADW 1364



 Score = 70.5 bits (171), Expect = 4e-09
 Identities = 57/170 (33%), Positives = 82/170 (48%), Gaps = 14/170 (8%)
 Frame = +2

Query: 191  RSNVNPRLHPRLLLSEADPHTI**PLFPSCWKQAMQQEFDALLANQTWNLVPLP----LA 358
            +S + PR++P+LLL+  +P T+   L    W  AM +EF+AL  N TW LVPLP      
Sbjct: 983  KSGIIPRINPKLLLTHTEPRTVKQALQDPKWLTAMTEEFEALKRNHTWTLVPLPKHRSAI 1042

Query: 359  ARQWL-------QVAILK-ELKLLLRVFIEKKVVTAN--FSLVVKPVAIRLTSQWLLPTS 508
              +W+          I K + +L+ + F + +    N  FS V+KP+ IRL    +L  +
Sbjct: 1043 GCKWVFRTKENPDGTINKYKARLVAKGFHQIQGFDFNETFSPVIKPITIRL----ILSLA 1098

Query: 509  GLLNWSRLVMPSFKAT*REMSKWYSCCMIHIPGFENNDINLVCKLQKPFY 658
                W    +    A    + +     MI  PGFE  D NLVCKL K  Y
Sbjct: 1099 VSYKWPLKQLDVNNAFLNGLLE-EEVYMIQPPGFEEADENLVCKLNKALY 1147


>gb|KYP67039.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1279

 Score = 97.4 bits (241), Expect = 6e-18
 Identities = 111/394 (28%), Positives = 170/394 (43%), Gaps = 50/394 (12%)
 Frame = +2

Query: 203  NPRLHPRLLLSEADPHTI**PLFPSCWKQAMQQEFDALLANQTWNLVPLPLAAR----QW 370
            NPR+HP L L+ ++P T+   L    W  AMQQE++AL+ N TW+LV LP   +    +W
Sbjct: 751  NPRIHPSLFLAHSEPKTVKQALADPNWFSAMQQEYNALMLNHTWDLVSLPSDRKAVGCKW 810

Query: 371  L---------QVAILKELKLLLRVF--IEKKVVTANFSLVVKPVAIRLTSQWLLPTSGLL 517
            +          +  LK  +L+ + F  +        FS V+KP+ IR+    +L  +   
Sbjct: 811  VFRVKENADGSIDKLK-ARLVAKGFHQVHGFDFHETFSPVIKPITIRI----ILTLALTN 865

Query: 518  NWSRLVMPSFKAT*REMSKWYSCCMIHIPGFENNDINLVCKLQKPFY-------*W---L 667
            NW+   +    A      +  +  M+  PGFE  D +LVCKL K  Y        W   L
Sbjct: 866  NWNLFQLDVNNAFLNGTLE-ETIYMVQPPGFEAGDKSLVCKLNKALYGLKQAPRQWFNKL 924

Query: 668  KTRPYMPGMRDKPAS*SILVFSSLNFTPGIATKFKMWRIF*SQVLLCRWYSNXXXXXXXX 847
            K      G +      S+  +     T  I        I  S  LL +  +N        
Sbjct: 925  KLTLTRFGFQASKCDPSLFQYQHQTHTIFILVYVDDIIITGSSSLLIQQITNQLDSIFSL 984

Query: 848  XXXXXWGT*ISFLELN*ICFLPSSGSLILSQAMYRR--IY*TRLKW*LQMNFHS----IA 1009
                  G+   FL +  +  LP   SL+L+Q+ Y R  ++ T L        H     + 
Sbjct: 985  KQL---GSLDYFLGIE-VKHLPDK-SLVLTQSKYIRDLLFKTNL-----AEAHGAPSPMF 1034

Query: 1010 CSIKLSRYGSDFVEDPALHRSIVGEVQHVTVTKP----SSGSLILFLE------------ 1141
             + KLSR G+DF  DP   RS+VG +Q+ T+T+P    +   +  F+             
Sbjct: 1035 SNCKLSRSGNDFFHDPTFFRSVVGALQYATLTRPEISFAVNKVCQFMATPLDSHWVAVKR 1094

Query: 1142 -MKFV--NLCHSHELQPASAMSPLSLKASCDTDW 1234
             +K++   L +   +QPA+   P+SL A CD DW
Sbjct: 1095 ILKYLKGTLSYGLHMQPAAVNGPISLTAFCDADW 1128


>gb|KYP61342.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1358

 Score = 97.4 bits (241), Expect = 6e-18
 Identities = 111/394 (28%), Positives = 170/394 (43%), Gaps = 50/394 (12%)
 Frame = +2

Query: 203  NPRLHPRLLLSEADPHTI**PLFPSCWKQAMQQEFDALLANQTWNLVPLPLAAR----QW 370
            NPR+HP L L+ ++P T+   L    W  AMQQE++AL+ N TW+LV LP   +    +W
Sbjct: 830  NPRIHPSLFLAHSEPKTVKQALADPNWFSAMQQEYNALMLNHTWDLVSLPSDRKAVGCKW 889

Query: 371  L---------QVAILKELKLLLRVF--IEKKVVTANFSLVVKPVAIRLTSQWLLPTSGLL 517
            +          +  LK  +L+ + F  +        FS V+KP+ IR+    +L  +   
Sbjct: 890  VFRVKENADGSIDKLK-ARLVAKGFHQVHGFDFHETFSPVIKPITIRI----ILTLALTN 944

Query: 518  NWSRLVMPSFKAT*REMSKWYSCCMIHIPGFENNDINLVCKLQKPFY-------*W---L 667
            NW+   +    A      +  +  M+  PGFE  D +LVCKL K  Y        W   L
Sbjct: 945  NWNLFQLDVNNAFLNGTLE-ETIYMVQPPGFEAGDKSLVCKLNKALYGLKQAPRQWFNKL 1003

Query: 668  KTRPYMPGMRDKPAS*SILVFSSLNFTPGIATKFKMWRIF*SQVLLCRWYSNXXXXXXXX 847
            K      G +      S+  +     T  I        I  S  LL +  +N        
Sbjct: 1004 KLTLTRFGFQASKCDPSLFQYQHQTHTIFILVYVDDIIITGSSSLLIQQITNQLDSIFSL 1063

Query: 848  XXXXXWGT*ISFLELN*ICFLPSSGSLILSQAMYRR--IY*TRLKW*LQMNFHS----IA 1009
                  G+   FL +  +  LP   SL+L+Q+ Y R  ++ T L        H     + 
Sbjct: 1064 KQL---GSLDYFLGIE-VKHLPDK-SLVLTQSKYIRDLLFKTNL-----AEAHGAPSPMF 1113

Query: 1010 CSIKLSRYGSDFVEDPALHRSIVGEVQHVTVTKP----SSGSLILFLE------------ 1141
             + KLSR G+DF  DP   RS+VG +Q+ T+T+P    +   +  F+             
Sbjct: 1114 SNCKLSRSGNDFFHDPTFFRSVVGALQYATLTRPEISFAVNKVCQFMATPLDSHWVAVKR 1173

Query: 1142 -MKFV--NLCHSHELQPASAMSPLSLKASCDTDW 1234
             +K++   L +   +QPA+   P+SL A CD DW
Sbjct: 1174 ILKYLKGTLSYGLHMQPAAVNGPISLTAFCDADW 1207


>ref|XP_009368272.2| PREDICTED: uncharacterized protein LOC103957781 [Pyrus x
           bretschneideri]
          Length = 1880

 Score = 70.9 bits (172), Expect(3) = 1e-16
 Identities = 62/195 (31%), Positives = 98/195 (50%), Gaps = 19/195 (9%)
 Frame = +1

Query: 373 ASGNIKRT*A--VAKGFH*KEGCD-GKLLSGG*T-SSYKAYLTVALTNKWPLKLVEVSNA 540
           A+G+I R  A  VA GFH + G D G+  S     S+ +  L++A++N+WP++ ++V NA
Sbjct: 359 ANGSIDRYKARLVANGFHQQHGVDYGETFSPVVKHSTIRLVLSLAVSNQWPVRQLDVQNA 418

Query: 541 FLQGYLKGDE*M------V*LLYDTHSGV*K**HXXXXXXXXXXXXMVENKALHAWYER* 702
           FL GYL  +  M      V   Y  H                        +A  AW++R 
Sbjct: 419 FLHGYLAEEVYMRQPVGFVDSQYPHH------------VCRLQRSLYGLKQAPRAWFQRF 466

Query: 703 ASILINFGFQQPKF-YSWYSN*IQDV--------EDILITGTSLPLV*QLVTKLNILFAL 855
           +  L++ GFQ+ K  YS +    Q V        +DIL+TG     + +L+ KL  LF++
Sbjct: 467 SDFLLHLGFQESKCDYSLFVFKQQGVYLLLLIYVDDILLTGNHPQQMHRLIQKLRTLFSM 526

Query: 856 KQLGDLDFFLGIKLN 900
           K LG L +FLG++++
Sbjct: 527 KDLGPLHYFLGVEVS 541



 Score = 32.7 bits (73), Expect(3) = 1e-16
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +2

Query: 1019 KLSRYGSDFVEDPALHRSIVGEVQHVTVTKP 1111
            KLS +  D   DP  +RS+VG +Q++T+T+P
Sbjct: 579  KLSLHEGDPHPDPYTYRSVVGALQYLTITRP 609



 Score = 32.3 bits (72), Expect(3) = 1e-16
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +2

Query: 281 WKQAMQQEFDALLANQTWNLVP 346
           W+ AM  EF+AL  + TWNLVP
Sbjct: 318 WRNAMVTEFNALQRSGTWNLVP 339


>ref|XP_014622404.1| PREDICTED: uncharacterized mitochondrial protein AtMg00810-like
           [Glycine max]
          Length = 443

 Score = 61.2 bits (147), Expect(2) = 2e-16
 Identities = 59/189 (31%), Positives = 86/189 (45%), Gaps = 20/189 (10%)
 Frame = +1

Query: 484 LTVALTNKWPLKLVEVSNAFLQGYLKGDE*MV*LLYDTHSGV*K**HXXXXXXXXXXXXM 663
           LT+AL+  W L  ++V+NAFL  +L+    M                             
Sbjct: 22  LTLALSYGWKLFQLDVNNAFLNRFLEETVFMK--------------QPPGFEVIDRSLVC 67

Query: 664 VENKALHA-------WYER*ASILINFGFQQPKFYSW---YSN*IQDV------EDILIT 795
             NKA++        W++R    L+  GF   K  S    Y + +  V      +DI++T
Sbjct: 68  KFNKAIYGSKQAPRQWFDRLKFTLLQLGFVSSKSDSSLFIYRHQLHTVYLLVYVDDIILT 127

Query: 796 GTSLPLV*QLVTKLNILFALKQLGDLDFFLGIKLNMLPAFLWFSYPI----SSYV*TDLL 963
           G+S  L+ QL  KLN  F+LKQLG LDFFLG+++  L     F+  I    S Y+  DLL
Sbjct: 128 GSSTSLIQQLTDKLNTAFSLKQLGHLDFFLGLEIKYL-----FNKSILMTQSKYI-RDLL 181

Query: 964 NKAEMVTAN 990
           +K  M  A+
Sbjct: 182 HKTNMAEAH 190



 Score = 54.7 bits (130), Expect(2) = 2e-16
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 23/102 (22%)
 Frame = +2

Query: 998  HSIACSI----KLSRYGSDFVEDPALHRSIVGEVQHVTVTKPSSGSLI------------ 1129
            HSI+  +    KLSR+G+D   DP L+RS+VG +Q+ T+T+P    ++            
Sbjct: 190  HSISSPMVSNCKLSRHGADAFHDPTLYRSVVGALQYATLTRPEISFVVNKVCQFMVAPLD 249

Query: 1130 -------LFLEMKFVNLCHSHELQPASAMSPLSLKASCDTDW 1234
                     L      L H   LQP S   PL+++A C+ DW
Sbjct: 250  SHWTVVKRILRYLKGTLSHGLLLQPTSIAKPLNIRAFCNADW 291


>gb|PNX77046.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 515

 Score = 66.2 bits (160), Expect(2) = 3e-16
 Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 22/161 (13%)
 Frame = +1

Query: 484 LTVALTNKWPLKLVEVSNAFLQGYL-------------KGDE*MV*LLYDTHSGV*K**H 624
           LT+A+T KWP++ ++++NAFL G L               D+ +V  L+ +  G+     
Sbjct: 188 LTLAVTYKWPVQQIDINNAFLNGILHEEVYMTQPTGFESSDKSLVCKLHKSLYGL----- 242

Query: 625 XXXXXXXXXXXXMVENKALHAWYER*ASILINFGFQQPKFYSWYSN*IQD---------V 777
                           +A  AWYER    L+  GF   K         Q          V
Sbjct: 243 ---------------KQAPRAWYERLTQTLLQMGFIASKCDPSLMVLHQQGACTYVLIYV 287

Query: 778 EDILITGTSLPLV*QLVTKLNILFALKQLGDLDFFLGIKLN 900
           +DILITG++  L+  ++ KLN   ALKQLG++D+FLGI+++
Sbjct: 288 DDILITGSAPHLIQDVIQKLNFKLALKQLGEVDYFLGIEVH 328



 Score = 48.9 bits (115), Expect(2) = 3e-16
 Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 20/127 (15%)
 Frame = +2

Query: 914  SSGSLILSQAMYRRIY*TRLKW*LQMNFHS-IACSIKLSRYGSDFVEDPALHRSIVGEVQ 1090
            +SG LIL+Q+ Y R    +          S +  S +LSR+G+D + DP+L+RS VG +Q
Sbjct: 331  ASGGLILNQSKYIRDLLCKTTMDNCKPIGSPMVNSCRLSRFGTDAMSDPSLYRSTVGALQ 390

Query: 1091 HVTVTKP----SSGSLILFLE-------------MKFV--NLCHSHELQPASAMSPLSLK 1213
            + T+T+P    S   +  F+              ++++   + H   L P+ +  P SL+
Sbjct: 391  YATLTRPDISFSVNKVCQFIAHPLESHWKAVKRILRYLKGTVNHGLLLHPSPSSPPFSLR 450

Query: 1214 ASCDTDW 1234
            A  D DW
Sbjct: 451  AYSDADW 457


>gb|PNX84939.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 499

 Score = 66.2 bits (160), Expect(2) = 3e-16
 Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 22/161 (13%)
 Frame = +1

Query: 484 LTVALTNKWPLKLVEVSNAFLQGYL-------------KGDE*MV*LLYDTHSGV*K**H 624
           LT+A+T KWP++ ++++NAFL G L               D+ +V  L+ +  G+     
Sbjct: 172 LTLAVTYKWPVQQIDINNAFLNGILHEEVYMTQPTGFESSDKSLVCKLHKSLYGL----- 226

Query: 625 XXXXXXXXXXXXMVENKALHAWYER*ASILINFGFQQPKFYSWYSN*IQD---------V 777
                           +A  AWYER    L+  GF   K         Q          V
Sbjct: 227 ---------------KQAPRAWYERLTQTLLQMGFIASKCDPSLMVLHQQGACTYVLIYV 271

Query: 778 EDILITGTSLPLV*QLVTKLNILFALKQLGDLDFFLGIKLN 900
           +DILITG++  L+  ++ KLN   ALKQLG++D+FLGI+++
Sbjct: 272 DDILITGSAPHLIQDVIQKLNFKLALKQLGEVDYFLGIEVH 312



 Score = 48.9 bits (115), Expect(2) = 3e-16
 Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 20/127 (15%)
 Frame = +2

Query: 914  SSGSLILSQAMYRRIY*TRLKW*LQMNFHS-IACSIKLSRYGSDFVEDPALHRSIVGEVQ 1090
            +SG LIL+Q+ Y R    +          S +  S +LSR+G+D + DP+L+RS VG +Q
Sbjct: 315  ASGGLILNQSKYIRDLLCKTTMDNCKPIGSPMVNSCRLSRFGTDAMSDPSLYRSTVGALQ 374

Query: 1091 HVTVTKP----SSGSLILFLE-------------MKFV--NLCHSHELQPASAMSPLSLK 1213
            + T+T+P    S   +  F+              ++++   + H   L P+ +  P SL+
Sbjct: 375  YATLTRPDISFSVNKVCQFIAHPLESHWKAVKRILRYLKGTVNHGLLLHPSPSSPPFSLR 434

Query: 1214 ASCDTDW 1234
            A  D DW
Sbjct: 435  AYSDADW 441


>gb|PNX77250.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Trifolium pratense]
          Length = 499

 Score = 66.2 bits (160), Expect(2) = 3e-16
 Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 22/161 (13%)
 Frame = +1

Query: 484 LTVALTNKWPLKLVEVSNAFLQGYL-------------KGDE*MV*LLYDTHSGV*K**H 624
           LT+A+T KWP++ ++++NAFL G L               D+ +V  L+ +  G+     
Sbjct: 79  LTLAVTYKWPVQQIDINNAFLNGILHEEVYMTQPTGFESSDKSLVCKLHKSLYGL----- 133

Query: 625 XXXXXXXXXXXXMVENKALHAWYER*ASILINFGFQQPKFYSWYSN*IQD---------V 777
                           +A  AWYER    L+  GF   K         Q          V
Sbjct: 134 ---------------KQAPRAWYERLTQTLLQMGFIASKCDPSLMVLHQQGACTYVLIYV 178

Query: 778 EDILITGTSLPLV*QLVTKLNILFALKQLGDLDFFLGIKLN 900
           +DILITG++  L+  ++ KLN   ALKQLG++D+FLGI+++
Sbjct: 179 DDILITGSAPHLIQDVIQKLNFKLALKQLGEVDYFLGIEVH 219



 Score = 48.9 bits (115), Expect(2) = 3e-16
 Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 20/127 (15%)
 Frame = +2

Query: 914  SSGSLILSQAMYRRIY*TRLKW*LQMNFHS-IACSIKLSRYGSDFVEDPALHRSIVGEVQ 1090
            +SG LIL+Q+ Y R    +          S +  S +LSR+G+D + DP+L+RS VG +Q
Sbjct: 222  ASGGLILNQSKYIRDLLCKTTMDNCKPIGSPMVNSCRLSRFGTDAMSDPSLYRSTVGALQ 281

Query: 1091 HVTVTKP----SSGSLILFLE-------------MKFV--NLCHSHELQPASAMSPLSLK 1213
            + T+T+P    S   +  F+              ++++   + H   L P+ +  P SL+
Sbjct: 282  YATLTRPDISFSVNKVCQFIAHPLESHWKAVKRILRYLKGTVNHGLLLHPSPSSPPFSLR 341

Query: 1214 ASCDTDW 1234
            A  D DW
Sbjct: 342  AYSDADW 348


>gb|PNX76161.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 459

 Score = 66.2 bits (160), Expect(2) = 3e-16
 Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 22/161 (13%)
 Frame = +1

Query: 484 LTVALTNKWPLKLVEVSNAFLQGYL-------------KGDE*MV*LLYDTHSGV*K**H 624
           LT+A+T KWP++ ++++NAFL G L               D+ +V  L+ +  G+     
Sbjct: 103 LTLAVTYKWPVQQIDINNAFLNGILHEEVYMTQPTGFESSDKSLVCKLHKSLYGL----- 157

Query: 625 XXXXXXXXXXXXMVENKALHAWYER*ASILINFGFQQPKFYSWYSN*IQD---------V 777
                           +A  AWYER    L+  GF   K         Q          V
Sbjct: 158 ---------------KQAPRAWYERLTQTLLQMGFIASKCDPSLMVLHQQGACTYVLIYV 202

Query: 778 EDILITGTSLPLV*QLVTKLNILFALKQLGDLDFFLGIKLN 900
           +DILITG++  L+  ++ KLN   ALKQLG++D+FLGI+++
Sbjct: 203 DDILITGSAPHLIQDVIQKLNFKLALKQLGEVDYFLGIEVH 243



 Score = 48.9 bits (115), Expect(2) = 3e-16
 Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 20/127 (15%)
 Frame = +2

Query: 914  SSGSLILSQAMYRRIY*TRLKW*LQMNFHS-IACSIKLSRYGSDFVEDPALHRSIVGEVQ 1090
            +SG LIL+Q+ Y R    +          S +  S +LSR+G+D + DP+L+RS VG +Q
Sbjct: 246  ASGGLILNQSKYIRDLLCKTTMDNCKPIGSPMVNSCRLSRFGTDAMSDPSLYRSTVGALQ 305

Query: 1091 HVTVTKP----SSGSLILFLE-------------MKFV--NLCHSHELQPASAMSPLSLK 1213
            + T+T+P    S   +  F+              ++++   + H   L P+ +  P SL+
Sbjct: 306  YATLTRPDISFSVNKVCQFIAHPLESHWKAVKRILRYLKGTVNHGLLLHPSPSSPPFSLR 365

Query: 1214 ASCDTDW 1234
            A  D DW
Sbjct: 366  AYSDADW 372


>gb|PNX92571.1| histone deacetylase [Trifolium pratense]
          Length = 1488

 Score = 90.1 bits (222), Expect = 2e-15
 Identities = 112/387 (28%), Positives = 164/387 (42%), Gaps = 48/387 (12%)
 Frame = +2

Query: 218  PRLLLSEADPHTI**PLFPSCWKQAMQQEFDALLANQTWNLVPLP----LAARQWLQVAI 385
            P+LL++ ++P ++   L    W  AMQ E+DALL N TW LVPLP        +W  V  
Sbjct: 968  PKLLVAHSEPKSVKQALLDPSWHAAMQTEYDALLNNNTWTLVPLPPDRQAIGCKW--VFR 1025

Query: 386  LKE----------LKLLLRVFIEKK--VVTANFSLVVKPVAIRLTSQWLLPTSGLLNWSR 529
            +KE           +L+ + F +++       FS VVKPV IR+    +L  +    WS 
Sbjct: 1026 IKENPDGTVNKYKARLVAKGFHQRQGFDFLETFSPVVKPVTIRV----ILTIAITKGWSI 1081

Query: 530  LVMPSFKAT*REMSKWYSCCMIHIPGFENNDINLVCKLQKPFY*WLKTRP---------- 679
              +    A    +       M+   GFE++D +LVCKL K  Y  LK  P          
Sbjct: 1082 QQLDVNNAFLNGVLD-EEVYMLQPQGFESSDSSLVCKLHKALY-GLKQAPRQWFERLQST 1139

Query: 680  -YMPGMRDKPAS*SILVFSSLNFTPGIATKFKMWRIF*SQVLLCRWYSNXXXXXXXXXXX 856
              + G +      S+ V+SS   T  +        I  +   L     +           
Sbjct: 1140 LLLLGFKSSKCDPSLFVYSSATDTIYLLVYVDDIIITSNNTTLLH---STISKLNKAFSL 1196

Query: 857  XXWGT*ISFLELN*ICFLPSSGSLILSQAMYRRIY*TRLKW*LQMNFHS--IACSIKLSR 1030
               G    FL +       SSGSL+L+Q+ Y R   TR    L  +  S  +  + KL++
Sbjct: 1197 KHLGNLDYFLGIE--VHHLSSGSLLLTQSKYLRDLLTRTHM-LDSSPVSTPMQSTCKLTK 1253

Query: 1031 YGSDFVEDPALHRSIVGEVQHVTVTKP----SSGSLILF----LEMKFV----------- 1153
             GS  ++DP ++RS+VG +Q+ T+T+P    S      F    LE  ++           
Sbjct: 1254 LGSSPLDDPFMYRSVVGALQYATITRPEISFSVNKACQFMSHPLETHWIAVKRILRYLKG 1313

Query: 1154 NLCHSHELQPASAMSPLSLKASCDTDW 1234
             L H   L PA    P SLKA CD DW
Sbjct: 1314 TLDHGLLLSPALPPKPPSLKAFCDADW 1340