BLASTX nr result
ID: Astragalus22_contig00028640
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Astragalus22_contig00028640
(849 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|KYP42260.1| Retrovirus-related Pol polyprotein from transposo... 365 e-120
gb|KHN21230.1| Retrovirus-related Pol polyprotein from transposo... 375 e-117
dbj|GAU34785.1| hypothetical protein TSUD_205890 [Trifolium subt... 350 e-111
gb|KYP63467.1| Retrovirus-related Pol polyprotein from transposo... 334 e-110
gb|PNY02430.1| retrovirus-related Pol polyprotein from transposo... 350 e-109
gb|KYP53274.1| Retrovirus-related Pol polyprotein from transposo... 345 e-109
gb|KYP68414.1| Retrovirus-related Pol polyprotein from transposo... 335 e-108
gb|KYP75416.1| Retrovirus-related Pol polyprotein from transposo... 340 e-108
gb|KYP48079.1| Retrovirus-related Pol polyprotein from transposo... 323 e-107
gb|KYP75335.1| Retrovirus-related Pol polyprotein from transposo... 330 e-107
gb|KYP42778.1| Retrovirus-related Pol polyprotein from transposo... 330 e-106
gb|PNX92571.1| histone deacetylase [Trifolium pratense] 347 e-106
gb|KYP61012.1| Retrovirus-related Pol polyprotein from transposo... 320 e-106
gb|PNX93462.1| histone deacetylase, partial [Trifolium pratense] 345 e-105
gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposo... 339 e-105
gb|KYP34577.1| Retrovirus-related Pol polyprotein from transposo... 328 e-105
gb|KYP34572.1| Retrovirus-related Pol polyprotein from transposo... 328 e-105
dbj|GAU32278.1| hypothetical protein TSUD_62940 [Trifolium subte... 340 e-104
gb|PNX91972.1| retrovirus-related Pol polyprotein from transposo... 341 e-104
gb|KYP68420.1| Retrovirus-related Pol polyprotein from transposo... 326 e-104
>gb|KYP42260.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 623
Score = 365 bits (938), Expect = e-120
Identities = 165/252 (65%), Positives = 197/252 (78%)
Frame = +3
Query: 93 ALWHNRLGHPNVHTLNCVLQQCNKPTVSVNKMPFCVACAMGKLHKLPSQLSSTVYTQPFE 272
+LWHNRLGHP L VL+ C P + N++ FCVAC MGK H+LPS S+TVY+ P E
Sbjct: 103 SLWHNRLGHPCFSVLQNVLKFCKIPVSNKNEVQFCVACCMGKSHRLPSSSSTTVYSTPLE 162
Query: 273 LVFSDLWGPAPMESSMGYKYYLSFVDAFTRYTWIYFLKTKSEALHHFKLFQALVEKQFNF 452
L+F DLWGP PM SSMGY YY+SFVDA++R+TWIYFLK KSEAL FK FQA+ + QFN
Sbjct: 163 LLFCDLWGPTPMLSSMGYHYYMSFVDAYSRFTWIYFLKNKSEALTIFKQFQAMAKLQFNH 222
Query: 453 KIKSVQTDWGGEFRPFHDYLTSLGIVHRLICPHTHHQNGVIERKHRHIVDMGLSLLSQAS 632
KIKS Q+DWGGEFRPF LTSLGI HRLICPHTHHQNGV+ERKHRHI++MGL+LLSQA
Sbjct: 223 KIKSFQSDWGGEFRPFTQILTSLGITHRLICPHTHHQNGVVERKHRHIIEMGLTLLSQAF 282
Query: 633 IPIHYWDHAFHTAVYLINRLPSPYQKNTIPYTNLYNKVPDFDFLKVFGCSCFPLLRPYHS 812
+P+ YWDH FHT VYLINRLPS +PY LY+K D+ F+KVFGC+C+PLL PY++
Sbjct: 283 LPMKYWDHVFHTTVYLINRLPSLSHNKIVPYQVLYSKDLDYTFIKVFGCACYPLLTPYNT 342
Query: 813 QKFQFRTAECIF 848
K FR+ EC+F
Sbjct: 343 NKLHFRSTECVF 354
>gb|KHN21230.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Glycine soja]
Length = 1429
Score = 375 bits (963), Expect = e-117
Identities = 164/263 (62%), Positives = 211/263 (80%), Gaps = 2/263 (0%)
Frame = +3
Query: 66 NNVNTSHSGAL--WHNRLGHPNVHTLNCVLQQCNKPTVSVNKMPFCVACAMGKLHKLPSQ 239
+++ TSH+ WH+RLGH N+ T+N VL+ CN PT + NK FC++C +GK H+LPSQ
Sbjct: 501 HSIVTSHNDLYFQWHHRLGHTNLDTMNNVLKSCNMPTFNKNKTDFCISCCLGKSHRLPSQ 560
Query: 240 LSSTVYTQPFELVFSDLWGPAPMESSMGYKYYLSFVDAFTRYTWIYFLKTKSEALHHFKL 419
LS + Y P EL++ DLWGPAPM+SSMGYKYY+SF+DAF++Y W+YFL KSE L FK
Sbjct: 561 LSQSTYNSPLELIYCDLWGPAPMQSSMGYKYYISFIDAFSKYIWVYFLHDKSETLTIFKQ 620
Query: 420 FQALVEKQFNFKIKSVQTDWGGEFRPFHDYLTSLGIVHRLICPHTHHQNGVIERKHRHIV 599
F+AL E Q N KIK++Q+DWGGEFR F YL+ LGI+HR+ICPHTHHQNGV+ERKHRHIV
Sbjct: 621 FKALAELQLNTKIKAIQSDWGGEFRSFTSYLSQLGIIHRIICPHTHHQNGVVERKHRHIV 680
Query: 600 DMGLSLLSQASIPIHYWDHAFHTAVYLINRLPSPYQKNTIPYTNLYNKVPDFDFLKVFGC 779
+MGLSLLS +S+P HYWDHAFHTAVY+INRLP+ + + IP L+N VPD++FL+ FGC
Sbjct: 681 EMGLSLLSHSSLPYHYWDHAFHTAVYIINRLPASH-NHCIPLKVLFNNVPDYNFLRAFGC 739
Query: 780 SCFPLLRPYHSQKFQFRTAECIF 848
+C+PLL PY++ KFQ+R+ ECIF
Sbjct: 740 ACYPLLTPYNNPKFQYRSKECIF 762
>dbj|GAU34785.1| hypothetical protein TSUD_205890 [Trifolium subterraneum]
Length = 888
Score = 350 bits (898), Expect = e-111
Identities = 162/268 (60%), Positives = 204/268 (76%), Gaps = 3/268 (1%)
Frame = +3
Query: 54 TALSNNVNTSHSGALWHNRLGHPNVHTLNCVLQQCNKPTVSVNKMP---FCVACAMGKLH 224
+ +SN+ + +S LWH RLGHPN TL L+QCN P ++ NK FC AC MGK H
Sbjct: 353 STVSNSSLSFNSLYLWHLRLGHPNDQTLKSTLKQCNIPFIN-NKHDVSNFCTACCMGKAH 411
Query: 225 KLPSQLSSTVYTQPFELVFSDLWGPAPMESSMGYKYYLSFVDAFTRYTWIYFLKTKSEAL 404
+L + S T YTQP ELVFSDLWGP+P SS+G+ YY+SF+DA++RYTWIY LK+KS+A
Sbjct: 412 RLYAPASQTTYTQPLELVFSDLWGPSPTVSSLGFHYYISFIDAYSRYTWIYLLKSKSDAF 471
Query: 405 HHFKLFQALVEKQFNFKIKSVQTDWGGEFRPFHDYLTSLGIVHRLICPHTHHQNGVIERK 584
FK F+ + E Q +K++QTDWGGEFRPF YL + GI+HRLICPHTHHQNGV+ERK
Sbjct: 472 TIFKQFKTMAELQLGHSLKALQTDWGGEFRPFTSYLANEGIIHRLICPHTHHQNGVVERK 531
Query: 585 HRHIVDMGLSLLSQASIPIHYWDHAFHTAVYLINRLPSPYQKNTIPYTNLYNKVPDFDFL 764
HRH+VD+GL+LLSQA++P+ YWDH+F TAV+LINRLP+ IPYT L++K PDF+
Sbjct: 532 HRHVVDLGLTLLSQANLPLTYWDHSFLTAVHLINRLPTASLNFKIPYTTLFHKDPDFNSF 591
Query: 765 KVFGCSCFPLLRPYHSQKFQFRTAECIF 848
KVFG +CFPLLRPY+S KF FR+ ECIF
Sbjct: 592 KVFGAACFPLLRPYNSHKFDFRSHECIF 619
>gb|KYP63467.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 411
Score = 334 bits (856), Expect = e-110
Identities = 150/265 (56%), Positives = 193/265 (72%)
Frame = +3
Query: 54 TALSNNVNTSHSGALWHNRLGHPNVHTLNCVLQQCNKPTVSVNKMPFCVACAMGKLHKLP 233
TA N+V S A WH+RL HP+ L V + CN PT++ FC C +GK HKL
Sbjct: 123 TASCNSV----SYATWHSRLEHPHNDVLKSVFRLCNFPTINKTVCDFCTPCCLGKSHKLL 178
Query: 234 SQLSSTVYTQPFELVFSDLWGPAPMESSMGYKYYLSFVDAFTRYTWIYFLKTKSEALHHF 413
S LS TVY PFEL +SDLWGPAP S GY+YY++FVDA TR+TWI+ LK+K+ L F
Sbjct: 179 STLSKTVYNTPFELTYSDLWGPAPFISDNGYQYYVTFVDAHTRFTWIFLLKSKAHTLDVF 238
Query: 414 KLFQALVEKQFNFKIKSVQTDWGGEFRPFHDYLTSLGIVHRLICPHTHHQNGVIERKHRH 593
K F A+++ QF IK +QTDWGGEFR F YL GI H LICPHTHHQNGV+ERKHR
Sbjct: 239 KQFHAMIQNQFQLPIKVIQTDWGGEFRSFTSYLAQTGIQHCLICPHTHHQNGVVERKHRR 298
Query: 594 IVDMGLSLLSQASIPIHYWDHAFHTAVYLINRLPSPYQKNTIPYTNLYNKVPDFDFLKVF 773
IV++GL++L+QA +P+H+WDHAF T+VYLINRLPS +N +P+ L++++PD++FL++F
Sbjct: 299 IVELGLTMLAQAQLPMHFWDHAFLTSVYLINRLPSSSIQNDVPFRKLFHQLPDYNFLRIF 358
Query: 774 GCSCFPLLRPYHSQKFQFRTAECIF 848
GCSCFP LRPY+ K Q R+ EC+F
Sbjct: 359 GCSCFPHLRPYNKNKLQLRSQECVF 383
>gb|PNY02430.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Trifolium pratense]
Length = 1064
Score = 350 bits (898), Expect = e-109
Identities = 161/258 (62%), Positives = 200/258 (77%), Gaps = 1/258 (0%)
Frame = +3
Query: 78 TSHSGALWHNRLGHPNVHTLNCVLQQCNKPTVSVNKMP-FCVACAMGKLHKLPSQLSSTV 254
T +S +WH RLGHP+ +TL VLQ C P S + FC AC MGK HKL S S T
Sbjct: 551 TQNSQYMWHLRLGHPHSNTLKLVLQHCKIPFNSNKDVSTFCTACCMGKAHKLHSLPSHTQ 610
Query: 255 YTQPFELVFSDLWGPAPMESSMGYKYYLSFVDAFTRYTWIYFLKTKSEALHHFKLFQALV 434
YT P ELVFSDLWGP+P S++GY YY++FVDA++R+TWIY LK+KS+A FK F+A+V
Sbjct: 611 YTHPLELVFSDLWGPSPQPSTLGYNYYITFVDAYSRFTWIYLLKSKSDAFIIFKQFKAMV 670
Query: 435 EKQFNFKIKSVQTDWGGEFRPFHDYLTSLGIVHRLICPHTHHQNGVIERKHRHIVDMGLS 614
E QF +K++QTDWGGEFRPF +L LG++HRLICPHTHHQNGV+ERKHRHIVD+GL+
Sbjct: 671 ELQFGHSLKALQTDWGGEFRPFTKFLKDLGVIHRLICPHTHHQNGVVERKHRHIVDLGLT 730
Query: 615 LLSQASIPIHYWDHAFHTAVYLINRLPSPYQKNTIPYTNLYNKVPDFDFLKVFGCSCFPL 794
LLSQAS+P+ YWD+AF TAVYLINRLPS IPYT L+++ PD+ FLKVFGC+CFPL
Sbjct: 731 LLSQASLPLSYWDYAFLTAVYLINRLPSAPLDFKIPYTLLFHQDPDYKFLKVFGCACFPL 790
Query: 795 LRPYHSQKFQFRTAECIF 848
LRPY++ K +R+ EC+F
Sbjct: 791 LRPYNTHKLDYRSHECLF 808
>gb|KYP53274.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 839
Score = 345 bits (885), Expect = e-109
Identities = 152/256 (59%), Positives = 196/256 (76%)
Frame = +3
Query: 81 SHSGALWHNRLGHPNVHTLNCVLQQCNKPTVSVNKMPFCVACAMGKLHKLPSQLSSTVYT 260
S S A WH+RLGHP+ L V + CN P ++ + FC +C +GK HKLPSQLS TVY
Sbjct: 146 SVSYATWHSRLGHPHNDVLKSVFKLCNFPNINKSVSDFCTSCCLGKSHKLPSQLSKTVYH 205
Query: 261 QPFELVFSDLWGPAPMESSMGYKYYLSFVDAFTRYTWIYFLKTKSEALHHFKLFQALVEK 440
PFEL++SDLWGPAP+ S GY+YY++FVDA TR+TWI+ LK+K+ L FK F A+V
Sbjct: 206 TPFELIYSDLWGPAPVLSDNGYQYYVTFVDAHTRFTWIFMLKSKAHTLDVFKQFHAMVRN 265
Query: 441 QFNFKIKSVQTDWGGEFRPFHDYLTSLGIVHRLICPHTHHQNGVIERKHRHIVDMGLSLL 620
QF IK++QTDWGGEFR F YL GI HR+ICPHTHHQNGV+ERKHRHIV++GL+LL
Sbjct: 266 QFQLPIKAIQTDWGGEFRSFTSYLAQHGIHHRIICPHTHHQNGVVERKHRHIVELGLTLL 325
Query: 621 SQASIPIHYWDHAFHTAVYLINRLPSPYQKNTIPYTNLYNKVPDFDFLKVFGCSCFPLLR 800
+QA +P+H+WD+AF T+VYLINRLPS + +P+ L++ +PD++FL+VFGCSCFP LR
Sbjct: 326 AQAHLPMHFWDYAFLTSVYLINRLPSSSIQQDVPFRKLFHHLPDYNFLRVFGCSCFPHLR 385
Query: 801 PYHSQKFQFRTAECIF 848
PY+ K QFR+ EC+F
Sbjct: 386 PYNKTKLQFRSQECVF 401
>gb|KYP68414.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 603
Score = 335 bits (860), Expect = e-108
Identities = 152/268 (56%), Positives = 199/268 (74%), Gaps = 4/268 (1%)
Frame = +3
Query: 57 ALSNNVNTSH----SGALWHNRLGHPNVHTLNCVLQQCNKPTVSVNKMPFCVACAMGKLH 224
A S +VNT+ S A WH+RLGHPNV + V + N V+ NK FC C +GK H
Sbjct: 148 ARSFSVNTAAKSYVSFATWHSRLGHPNVDVMKHVSRNFNIQLVTNNKSDFCTPCCLGKSH 207
Query: 225 KLPSQLSSTVYTQPFELVFSDLWGPAPMESSMGYKYYLSFVDAFTRYTWIYFLKTKSEAL 404
+LPS LS VY PF+LV++DLWGPAP+ S+ GY+YY++FVDA TR+TWIY LK K++
Sbjct: 208 RLPSNLSKIVYNTPFDLVYNDLWGPAPVTSTCGYQYYVTFVDAHTRFTWIYLLKNKAQTF 267
Query: 405 HHFKLFQALVEKQFNFKIKSVQTDWGGEFRPFHDYLTSLGIVHRLICPHTHHQNGVIERK 584
+ FK F A+V Q++ IK++QTDWGGE+R F +YL +GI HRLIC HTHHQNGV+ERK
Sbjct: 268 NVFKQFHAMVNNQYHHPIKALQTDWGGEYRSFTNYLNEVGIQHRLICRHTHHQNGVVERK 327
Query: 585 HRHIVDMGLSLLSQASIPIHYWDHAFHTAVYLINRLPSPYQKNTIPYTNLYNKVPDFDFL 764
HRHIV++GL+LL+QA +P+ +WDHAF T VYLINRLPS +N +PY L+++ PD+ L
Sbjct: 328 HRHIVELGLTLLAQAELPMQFWDHAFLTGVYLINRLPSSSIQNVVPYHKLFHQPPDYLSL 387
Query: 765 KVFGCSCFPLLRPYHSQKFQFRTAECIF 848
++FGCSCFP LRPY+ K QFR+ EC+F
Sbjct: 388 RIFGCSCFPHLRPYNKHKLQFRSQECVF 415
>gb|KYP75416.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 785
Score = 340 bits (873), Expect = e-108
Identities = 149/264 (56%), Positives = 195/264 (73%), Gaps = 2/264 (0%)
Frame = +3
Query: 63 SNNVNTSHSG--ALWHNRLGHPNVHTLNCVLQQCNKPTVSVNKMPFCVACAMGKLHKLPS 236
S N + HS WH+RLGHP+ + V + CN P ++ FC C +GK HKLPS
Sbjct: 391 SANTASCHSVPYVTWHSRLGHPHNDVIKSVFRLCNFPIINKTASDFCTPCCLGKSHKLPS 450
Query: 237 QLSSTVYTQPFELVFSDLWGPAPMESSMGYKYYLSFVDAFTRYTWIYFLKTKSEALHHFK 416
S TVY PFEL++SDLWGPAP+ S GY+YY++FVDA TR+TWI+ LK K+ L FK
Sbjct: 451 NSSKTVYHTPFELIYSDLWGPAPITSDNGYQYYVTFVDAHTRFTWIFLLKRKAHTLDVFK 510
Query: 417 LFQALVEKQFNFKIKSVQTDWGGEFRPFHDYLTSLGIVHRLICPHTHHQNGVIERKHRHI 596
F A+++ QF IK++QTDWGGEFR F YL GI HRLICPHTHHQNGV+ERKHRHI
Sbjct: 511 QFHAMIQNQFQLPIKAIQTDWGGEFRSFTSYLAQNGIQHRLICPHTHHQNGVVERKHRHI 570
Query: 597 VDMGLSLLSQASIPIHYWDHAFHTAVYLINRLPSPYQKNTIPYTNLYNKVPDFDFLKVFG 776
V++GL++L+QA +P+ +WDHAF T+VYLINRLPS +N +P+ L++++PD++FL++FG
Sbjct: 571 VELGLTMLAQAHLPMQFWDHAFLTSVYLINRLPSSSIQNDVPFRKLFHQLPDYNFLRIFG 630
Query: 777 CSCFPLLRPYHSQKFQFRTAECIF 848
CSCFP LRPY+ K QFR+ EC+F
Sbjct: 631 CSCFPHLRPYNKNKLQFRSQECVF 654
>gb|KYP48079.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 302
Score = 323 bits (827), Expect = e-107
Identities = 156/262 (59%), Positives = 189/262 (72%), Gaps = 1/262 (0%)
Frame = +3
Query: 66 NNVNTSHSGALWHNRLGHPNVHTLNCVLQQCNKPTVSVNKMPFCVACAMGKLHKLPSQLS 245
NNV +S S LWH RLG+P H V QQCN P V+ FC AC MGK H+LPS LS
Sbjct: 2 NNVKSS-SHTLWHARLGNPKFHVQKLVSQQCNIPVVNKIDGFFCNACYMGKAHRLPSNLS 60
Query: 246 STVYTQPFELVFSDLWGPAPMESSMGYKYYLSFVDAFTRYTWIYFLKTKSEALHHFKLFQ 425
VY P ELV+SDLWGPAP++SS YKYYLSFV+A+ +TWIY L+ K + L FK F+
Sbjct: 61 DLVYKNPLELVYSDLWGPAPIQSSNNYKYYLSFVNAYPCFTWIYLLQNKFDTLTVFKQFK 120
Query: 426 ALVEKQFNFKIKSVQTDWGGEF-RPFHDYLTSLGIVHRLICPHTHHQNGVIERKHRHIVD 602
+VE QFN +KS+QTDWGGEF P YL LG+ HR+ICPHT HQNGVIERKHRHIV+
Sbjct: 121 MMVELQFNTSLKSLQTDWGGEFIIPLPKYLKDLGVNHRVICPHTPHQNGVIERKHRHIVE 180
Query: 603 MGLSLLSQASIPIHYWDHAFHTAVYLINRLPSPYQKNTIPYTNLYNKVPDFDFLKVFGCS 782
+GL+ LS AS+P+ +WD F TAVYLINRLP+ K +PYT L+ + PD+ FLK FGC+
Sbjct: 181 LGLT-LSHASLPLKFWDSTFCTAVYLINRLPTASLKYVVPYTILFKQSPDYTFLKTFGCA 239
Query: 783 CFPLLRPYHSQKFQFRTAECIF 848
CFPLLRPY+ K FR+ EC+F
Sbjct: 240 CFPLLRPYNKHKLDFRSHECVF 261
>gb|KYP75335.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 537
Score = 330 bits (847), Expect = e-107
Identities = 140/252 (55%), Positives = 189/252 (75%)
Frame = +3
Query: 93 ALWHNRLGHPNVHTLNCVLQQCNKPTVSVNKMPFCVACAMGKLHKLPSQLSSTVYTQPFE 272
A WH+RLGHP+ + + + CN P ++ FC C +GK HKLPS LS TVY PFE
Sbjct: 39 ATWHSRLGHPHNDVMKSMFRLCNFPIINKTVSDFCTPCRLGKSHKLPSTLSKTVYHTPFE 98
Query: 273 LVFSDLWGPAPMESSMGYKYYLSFVDAFTRYTWIYFLKTKSEALHHFKLFQALVEKQFNF 452
L++SDLW PAP+ S GY+YY++FVDA TR+ WI+ K+K+ L FK F A+++ QF
Sbjct: 99 LIYSDLWRPAPITSDNGYQYYVTFVDAHTRFIWIFLFKSKAHTLDVFKQFHAMIQNQFQL 158
Query: 453 KIKSVQTDWGGEFRPFHDYLTSLGIVHRLICPHTHHQNGVIERKHRHIVDMGLSLLSQAS 632
IK++QTDWGGEFR F YL GI HRLICPHTHHQNG++ERKHRHIV++GL++L+QA
Sbjct: 159 PIKAIQTDWGGEFRSFTSYLAQNGIQHRLICPHTHHQNGIVERKHRHIVELGLTMLAQAH 218
Query: 633 IPIHYWDHAFHTAVYLINRLPSPYQKNTIPYTNLYNKVPDFDFLKVFGCSCFPLLRPYHS 812
+P+ +WDHAF T+VYLINRLPS ++ +P+ L++++PD++FL++FGCSCFP LRPY+
Sbjct: 219 LPMQFWDHAFLTSVYLINRLPSSSIQHDVPFRKLFHQLPDYNFLRIFGCSCFPHLRPYNK 278
Query: 813 QKFQFRTAECIF 848
K Q R+ EC+F
Sbjct: 279 NKLQLRSQECVF 290
>gb|KYP42778.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 572
Score = 330 bits (846), Expect = e-106
Identities = 149/252 (59%), Positives = 188/252 (74%)
Frame = +3
Query: 72 VNTSHSGALWHNRLGHPNVHTLNCVLQQCNKPTVSVNKMPFCVACAMGKLHKLPSQLSST 251
V TS S LWH RLGHPN+H L VL QC +V+ N + FC +C +GK H+LPS +S +
Sbjct: 321 VLTSSSSNLWHTRLGHPNLHVLKLVLNQCKLGSVNKNTLDFCNSCVIGKSHRLPSLISDS 380
Query: 252 VYTQPFELVFSDLWGPAPMESSMGYKYYLSFVDAFTRYTWIYFLKTKSEALHHFKLFQAL 431
VYT P EL+++DLWG + + S GY YY++FVDAF++YTWIY LK K EAL FK F+++
Sbjct: 381 VYTTPLELIYTDLWGLSHVISFSGYNYYIAFVDAFSKYTWIYPLKVKFEALLVFKHFKSM 440
Query: 432 VEKQFNFKIKSVQTDWGGEFRPFHDYLTSLGIVHRLICPHTHHQNGVIERKHRHIVDMGL 611
VE Q N+KIKSVQ+DWGGEF+PF +L S GI HRLICPHTHHQNG +ERKHRHI+D GL
Sbjct: 441 VELQLNYKIKSVQSDWGGEFKPFTSFLASHGITHRLICPHTHHQNGTVERKHRHILDSGL 500
Query: 612 SLLSQASIPIHYWDHAFHTAVYLINRLPSPYQKNTIPYTNLYNKVPDFDFLKVFGCSCFP 791
+LL AS+P+ +WD AF T VYL NRLPS ++PYT L+ PD+DFL FGC+CFP
Sbjct: 501 TLLHHASLPLKFWDFAFMTVVYLFNRLPSAALNFSVPYTVLFKTPPDYDFLNSFGCACFP 560
Query: 792 LLRPYHSQKFQF 827
LLRPY++ K +
Sbjct: 561 LLRPYNTHKLDY 572
>gb|PNX92571.1| histone deacetylase [Trifolium pratense]
Length = 1488
Score = 347 bits (889), Expect = e-106
Identities = 158/267 (59%), Positives = 201/267 (75%), Gaps = 2/267 (0%)
Frame = +3
Query: 54 TALSNNVNT--SHSGALWHNRLGHPNVHTLNCVLQQCNKPTVSVNKMPFCVACAMGKLHK 227
T+ N V++ S LWH RLGHP+ ++ V+Q CN + + FC AC MGK H+
Sbjct: 550 TSTCNKVSSLAPSSHYLWHQRLGHPSHNSFKLVMQHCNFTVNNKDSSQFCAACCMGKAHR 609
Query: 228 LPSQLSSTVYTQPFELVFSDLWGPAPMESSMGYKYYLSFVDAFTRYTWIYFLKTKSEALH 407
L S LS T Y+ P ELV+ DLWGP+P S GY YY+SFVDA++++TWIY LK+KS+AL
Sbjct: 610 LHSPLSHTTYSAPLELVYCDLWGPSPSPSKQGYHYYISFVDAYSKFTWIYLLKSKSDALL 669
Query: 408 HFKLFQALVEKQFNFKIKSVQTDWGGEFRPFHDYLTSLGIVHRLICPHTHHQNGVIERKH 587
FK F+++VE QF +K++QTDWGGEFRPF +LT LG+VHRLICPHTHHQNGV+ERKH
Sbjct: 670 IFKQFKSMVELQFGHPLKALQTDWGGEFRPFTKFLTELGVVHRLICPHTHHQNGVVERKH 729
Query: 588 RHIVDMGLSLLSQASIPIHYWDHAFHTAVYLINRLPSPYQKNTIPYTNLYNKVPDFDFLK 767
RHIVD+GL+LLSQA++PI +WD+AF TAVYLINRLPS PY L+ + PD+ FLK
Sbjct: 730 RHIVDLGLTLLSQATLPITFWDYAFPTAVYLINRLPSSSINFQTPYFLLFKQHPDYHFLK 789
Query: 768 VFGCSCFPLLRPYHSQKFQFRTAECIF 848
VFGC+CFPLLRPYH+ K +FR+ EC+F
Sbjct: 790 VFGCACFPLLRPYHNHKLEFRSQECLF 816
>gb|KYP61012.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 340
Score = 320 bits (821), Expect = e-106
Identities = 143/259 (55%), Positives = 187/259 (72%)
Frame = +3
Query: 63 SNNVNTSHSGALWHNRLGHPNVHTLNCVLQQCNKPTVSVNKMPFCVACAMGKLHKLPSQL 242
+ N + S S +WH RLGHPN H L V QCN + + FC +C +GK +LPS
Sbjct: 82 NKNSDVSSSSTMWHTRLGHPNSHVLKLVHTQCNLLSSNTQVTKFCSSCCVGKSRRLPSSA 141
Query: 243 SSTVYTQPFELVFSDLWGPAPMESSMGYKYYLSFVDAFTRYTWIYFLKTKSEALHHFKLF 422
S T+Y+ P +L+F++LWGP+ + S GY YY++F+DAF++YTWIY LK+K E L F+ F
Sbjct: 142 SQTIYSAPLDLIFTNLWGPSHITSFSGYLYYVAFIDAFSKYTWIYPLKSKVETLSIFQQF 201
Query: 423 QALVEKQFNFKIKSVQTDWGGEFRPFHDYLTSLGIVHRLICPHTHHQNGVIERKHRHIVD 602
+A+VE QFN KIKSVQ+DWGGE+R F +L + GI HR+ICPHTHHQNGV+ERKHRHIV+
Sbjct: 202 KAMVELQFNTKIKSVQSDWGGEYRAFTSFLATNGIKHRVICPHTHHQNGVVERKHRHIVE 261
Query: 603 MGLSLLSQASIPIHYWDHAFHTAVYLINRLPSPYQKNTIPYTNLYNKVPDFDFLKVFGCS 782
+GL+LL AS+P+ +WD +F T VYLINRLPS +P+T L+NK PD+ FL+ FGC
Sbjct: 262 IGLTLLHHASLPLKFWDFSFTTDVYLINRLPSDALNFNVPFTTLFNKSPDYKFLRTFGCV 321
Query: 783 CFPLLRPYHSQKFQFRTAE 839
CFP LRPY S K FR+ E
Sbjct: 322 CFPFLRPYASHKLNFRSQE 340
>gb|PNX93462.1| histone deacetylase, partial [Trifolium pratense]
Length = 1489
Score = 345 bits (885), Expect = e-105
Identities = 162/264 (61%), Positives = 198/264 (75%), Gaps = 2/264 (0%)
Frame = +3
Query: 63 SNNVNTSHSGALWHNRLGHPNVHTLNCVLQQCNKPTVSVNK--MPFCVACAMGKLHKLPS 236
S ++N+ H +WH RLGHPN TL L+ CN + + C AC MGK H+L S
Sbjct: 564 SVSLNSQH---MWHLRLGHPNNQTLKSALKLCNISFQNNDNDVSLLCTACCMGKAHRLHS 620
Query: 237 QLSSTVYTQPFELVFSDLWGPAPMESSMGYKYYLSFVDAFTRYTWIYFLKTKSEALHHFK 416
S TVY+ P ELVFSDLWGPAP SS+GY YY++F+DAF++YTWIY LK+KSEAL FK
Sbjct: 621 PPSQTVYSHPLELVFSDLWGPAPSTSSLGYHYYITFIDAFSKYTWIYLLKSKSEALTVFK 680
Query: 417 LFQALVEKQFNFKIKSVQTDWGGEFRPFHDYLTSLGIVHRLICPHTHHQNGVIERKHRHI 596
F+ + E Q +KS+QTDWGGEFRPF L+ LG+ HRLICPHTHHQNGV+ERKHRH+
Sbjct: 681 QFKTMAELQLGCSLKSLQTDWGGEFRPFTKILSELGVSHRLICPHTHHQNGVVERKHRHV 740
Query: 597 VDMGLSLLSQASIPIHYWDHAFHTAVYLINRLPSPYQKNTIPYTNLYNKVPDFDFLKVFG 776
VD+GL+LLSQA++PI YWDHAF TAV+LINRLP+ IPYT L+NK+PD+ LKVFG
Sbjct: 741 VDLGLTLLSQANLPITYWDHAFLTAVHLINRLPTAALSFKIPYTVLFNKIPDYHSLKVFG 800
Query: 777 CSCFPLLRPYHSQKFQFRTAECIF 848
C+CFPLLRPY+S K FR+ ECIF
Sbjct: 801 CACFPLLRPYNSHKLDFRSHECIF 824
>gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1073
Score = 339 bits (870), Expect = e-105
Identities = 149/254 (58%), Positives = 195/254 (76%)
Frame = +3
Query: 87 SGALWHNRLGHPNVHTLNCVLQQCNKPTVSVNKMPFCVACAMGKLHKLPSQLSSTVYTQP 266
S A WH+RLGHPNV + V + N VS NK FC C +GK H+LPS LS T+Y P
Sbjct: 162 SFATWHSRLGHPNVDVMKHVSRNYNIQLVSNNKSNFCTPCCLGKSHRLPSNLSRTIYNTP 221
Query: 267 FELVFSDLWGPAPMESSMGYKYYLSFVDAFTRYTWIYFLKTKSEALHHFKLFQALVEKQF 446
F+LV+SDLWGPAP+ S+ GY+YY++FVDA TR+TWIY LK+K++ + FK F A+V+ Q+
Sbjct: 222 FDLVYSDLWGPAPVTSTCGYQYYVTFVDAHTRFTWIYLLKSKAQTFNVFKQFHAMVKNQY 281
Query: 447 NFKIKSVQTDWGGEFRPFHDYLTSLGIVHRLICPHTHHQNGVIERKHRHIVDMGLSLLSQ 626
+ IK++QTDWGGE+R F YL +GI HRLICPHTHHQNGV ERKHRHIV++GL+L++Q
Sbjct: 282 HHPIKALQTDWGGEYRSFTTYLNEVGIQHRLICPHTHHQNGVAERKHRHIVELGLTLMAQ 341
Query: 627 ASIPIHYWDHAFHTAVYLINRLPSPYQKNTIPYTNLYNKVPDFDFLKVFGCSCFPLLRPY 806
A +P+ +WDH+F TAVYLINRLPS +N +PY L+++ PD+ L++FGCSCFP LRPY
Sbjct: 342 AELPMQFWDHSFLTAVYLINRLPSSSIQNAVPYHKLFHQPPDYLSLRIFGCSCFPHLRPY 401
Query: 807 HSQKFQFRTAECIF 848
+ K QFR+ EC+F
Sbjct: 402 NKHKLQFRSQECVF 415
>gb|KYP34577.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 661
Score = 328 bits (842), Expect = e-105
Identities = 148/265 (55%), Positives = 196/265 (73%)
Frame = +3
Query: 54 TALSNNVNTSHSGALWHNRLGHPNVHTLNCVLQQCNKPTVSVNKMPFCVACAMGKLHKLP 233
T SN+V S A WH+RLGH + + V + CN P ++ + FC +C +GK HKLP
Sbjct: 106 TVSSNSV----SYATWHSRLGHAHNDVIKSVFKLCNFPIINKSVSDFCTSCCLGKSHKLP 161
Query: 234 SQLSSTVYTQPFELVFSDLWGPAPMESSMGYKYYLSFVDAFTRYTWIYFLKTKSEALHHF 413
SQLS TVY PFEL++SDLWGPAP+ S GY+YY++ VDA TR+TWI+ LK+K+ L F
Sbjct: 162 SQLSKTVYHTPFELIYSDLWGPAPVLSDNGYQYYVTLVDAHTRFTWIFLLKSKAHTLDVF 221
Query: 414 KLFQALVEKQFNFKIKSVQTDWGGEFRPFHDYLTSLGIVHRLICPHTHHQNGVIERKHRH 593
K F A+V+ QF IK++QTDWGGEFR F YL GI HR+ICPHTHHQNGV+E KHRH
Sbjct: 222 KQFHAMVQNQFQLPIKAIQTDWGGEFRSFTSYLAQHGIHHRIICPHTHHQNGVVECKHRH 281
Query: 594 IVDMGLSLLSQASIPIHYWDHAFHTAVYLINRLPSPYQKNTIPYTNLYNKVPDFDFLKVF 773
IV++GL+LL+QA + + +WD+AF T+VYLINRLPS + +P+ L++++PD++FL+VF
Sbjct: 282 IVELGLTLLAQAQLSMSFWDYAFLTSVYLINRLPSSSIQQDVPFQKLFHQLPDYNFLRVF 341
Query: 774 GCSCFPLLRPYHSQKFQFRTAECIF 848
GCSCFP L PY+ K QFR+ EC+F
Sbjct: 342 GCSCFPHLWPYNKTKLQFRSQECVF 366
>gb|KYP34572.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 682
Score = 328 bits (842), Expect = e-105
Identities = 148/265 (55%), Positives = 196/265 (73%)
Frame = +3
Query: 54 TALSNNVNTSHSGALWHNRLGHPNVHTLNCVLQQCNKPTVSVNKMPFCVACAMGKLHKLP 233
T SN+V S A WH+RLGH + + V + CN P ++ + FC +C +GK HKLP
Sbjct: 127 TVSSNSV----SYATWHSRLGHAHNDVIKSVFKLCNFPIINKSVSDFCTSCCLGKSHKLP 182
Query: 234 SQLSSTVYTQPFELVFSDLWGPAPMESSMGYKYYLSFVDAFTRYTWIYFLKTKSEALHHF 413
SQLS TVY PFEL++SDLWGPAP+ S GY+YY++ VDA TR+TWI+ LK+K+ L F
Sbjct: 183 SQLSKTVYHTPFELIYSDLWGPAPVLSDNGYQYYVTLVDAHTRFTWIFLLKSKAHTLDVF 242
Query: 414 KLFQALVEKQFNFKIKSVQTDWGGEFRPFHDYLTSLGIVHRLICPHTHHQNGVIERKHRH 593
K F A+V+ QF IK++QTDWGGEFR F YL GI HR+ICPHTHHQNGV+E KHRH
Sbjct: 243 KQFHAMVQNQFQLPIKAIQTDWGGEFRSFTSYLAQHGIHHRIICPHTHHQNGVVECKHRH 302
Query: 594 IVDMGLSLLSQASIPIHYWDHAFHTAVYLINRLPSPYQKNTIPYTNLYNKVPDFDFLKVF 773
IV++GL+LL+QA + + +WD+AF T+VYLINRLPS + +P+ L++++PD++FL+VF
Sbjct: 303 IVELGLTLLAQAQLSMSFWDYAFLTSVYLINRLPSSSIQQDVPFQKLFHQLPDYNFLRVF 362
Query: 774 GCSCFPLLRPYHSQKFQFRTAECIF 848
GCSCFP L PY+ K QFR+ EC+F
Sbjct: 363 GCSCFPHLWPYNKTKLQFRSQECVF 387
>dbj|GAU32278.1| hypothetical protein TSUD_62940 [Trifolium subterraneum]
Length = 1409
Score = 340 bits (873), Expect = e-104
Identities = 162/269 (60%), Positives = 200/269 (74%), Gaps = 4/269 (1%)
Frame = +3
Query: 54 TALSNNVNTS-HSGALWHNRLGHPNVHTLNCVLQQCNKPTVSVNKMP---FCVACAMGKL 221
++ S N N S +S LWH R GHPN TL L+QCN P + NK FC C MGK
Sbjct: 502 SSTSCNSNLSCNSLYLWHLRPGHPNDQTLKSTLKQCNIPFTN-NKSDVSNFCTTCCMGKA 560
Query: 222 HKLPSQLSSTVYTQPFELVFSDLWGPAPMESSMGYKYYLSFVDAFTRYTWIYFLKTKSEA 401
H+L S S T YT P ELVFSDL GP+P SS+G+ YY++F+DA++RYTWIY LK+KS+A
Sbjct: 561 HRLHSSASKTTYTHPLELVFSDLRGPSPSVSSLGFHYYITFIDAYSRYTWIYLLKSKSDA 620
Query: 402 LHHFKLFQALVEKQFNFKIKSVQTDWGGEFRPFHDYLTSLGIVHRLICPHTHHQNGVIER 581
FK F+ + E Q +KS+QTDWGGEFRPF YL +LGIVHRLICPHTHHQNGV+ER
Sbjct: 621 FPIFKQFKTMAELQLGHSLKSLQTDWGGEFRPFTSYLDNLGIVHRLICPHTHHQNGVVER 680
Query: 582 KHRHIVDMGLSLLSQASIPIHYWDHAFHTAVYLINRLPSPYQKNTIPYTNLYNKVPDFDF 761
KHRH+VD+GL+LLSQA++P+ YWDHAF TAV+LINRLP+ +PYT L+ K PD++
Sbjct: 681 KHRHVVDLGLTLLSQANLPLTYWDHAFLTAVHLINRLPTASLNFKVPYTTLFQKDPDYNS 740
Query: 762 LKVFGCSCFPLLRPYHSQKFQFRTAECIF 848
LKVFG +CFPL+RPY+S KF FR+ ECIF
Sbjct: 741 LKVFGSACFPLIRPYNSHKFDFRSHECIF 769
>gb|PNX91972.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trifolium pratense]
Length = 1516
Score = 341 bits (875), Expect = e-104
Identities = 158/254 (62%), Positives = 191/254 (75%), Gaps = 3/254 (1%)
Frame = +3
Query: 96 LWHNRLGHPNVHTLNCVLQQCNKPTVSVNKMP---FCVACAMGKLHKLPSQLSSTVYTQP 266
LWH RLGHPN TL L QCN P + NK C AC MGK H+L S S T Y P
Sbjct: 591 LWHLRLGHPNDQTLKFTLNQCNIPFTN-NKSDVSALCTACCMGKAHRLHSSASQTTYNHP 649
Query: 267 FELVFSDLWGPAPMESSMGYKYYLSFVDAFTRYTWIYFLKTKSEALHHFKLFQALVEKQF 446
ELVFSDLWGP+P SS+G+ YY++F+DAF+RYTWIY LK+KS+A FK F+A+ E Q
Sbjct: 650 LELVFSDLWGPSPTVSSLGFHYYITFIDAFSRYTWIYLLKSKSDAFTVFKQFKAMAELQL 709
Query: 447 NFKIKSVQTDWGGEFRPFHDYLTSLGIVHRLICPHTHHQNGVIERKHRHIVDMGLSLLSQ 626
+ +K++QTDWGGEFR F YLT LGI HRLICPHTHHQNGV+ERKHRH+VD+GL+LLSQ
Sbjct: 710 GYPLKALQTDWGGEFRSFTSYLTDLGITHRLICPHTHHQNGVVERKHRHVVDLGLTLLSQ 769
Query: 627 ASIPIHYWDHAFHTAVYLINRLPSPYQKNTIPYTNLYNKVPDFDFLKVFGCSCFPLLRPY 806
A++P+ YWDHAF TAV+LINRLP+ + IPYT L+NK P+F KVFG +CFPLLRPY
Sbjct: 770 ANLPLKYWDHAFLTAVHLINRLPTASLQFKIPYTILFNKSPEFTSFKVFGSACFPLLRPY 829
Query: 807 HSQKFQFRTAECIF 848
++ KF R+ ECIF
Sbjct: 830 NAHKFDVRSHECIF 843
>gb|KYP68420.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 653
Score = 326 bits (835), Expect = e-104
Identities = 151/268 (56%), Positives = 200/268 (74%), Gaps = 4/268 (1%)
Frame = +3
Query: 57 ALSNNVNTSH----SGALWHNRLGHPNVHTLNCVLQQCNKPTVSVNKMPFCVACAMGKLH 224
A S +VNT+ S A WH+RLGHPNV + V + N V+ NK FC C +GK H
Sbjct: 355 ARSFSVNTTAKSYVSFATWHSRLGHPNVDVMKHVSRNFNIQLVTNNKSDFCTPCCLGKSH 414
Query: 225 KLPSQLSSTVYTQPFELVFSDLWGPAPMESSMGYKYYLSFVDAFTRYTWIYFLKTKSEAL 404
+LPS LS TVY PF+LV+SDL GPAP+ S+ GY+YY++FVDA TR+T Y LK+K++
Sbjct: 415 RLPSNLSKTVYNTPFDLVYSDLCGPAPVTSTCGYQYYVTFVDAHTRFT--YLLKSKAQTF 472
Query: 405 HHFKLFQALVEKQFNFKIKSVQTDWGGEFRPFHDYLTSLGIVHRLICPHTHHQNGVIERK 584
+ FK F A+V+ Q++ IK++QTDWGGE+R F +YL +GI HRLICPHTHH+NGV+ERK
Sbjct: 473 NVFKQFHAMVKNQYHHPIKALQTDWGGEYRSFTNYLNEVGIQHRLICPHTHHRNGVVERK 532
Query: 585 HRHIVDMGLSLLSQASIPIHYWDHAFHTAVYLINRLPSPYQKNTIPYTNLYNKVPDFDFL 764
HRHI+++GL+LL+QA +P+ +WDHAF T VYLINRLPS +N IPY L+++ PD+ L
Sbjct: 533 HRHIIELGLTLLAQAELPMQFWDHAFLTGVYLINRLPSSSIQNAIPYHKLFHQPPDYLSL 592
Query: 765 KVFGCSCFPLLRPYHSQKFQFRTAECIF 848
++FGCSCFP LRPY+ K QFR+ EC+F
Sbjct: 593 RIFGCSCFPHLRPYNKHKLQFRSQECVF 620