BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus22_contig00028571
         (1065 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|GAU31045.1| hypothetical protein TSUD_214810 [Trifolium subt...   222   1e-83
dbj|GAU27929.1| hypothetical protein TSUD_160240 [Trifolium subt...   211   1e-81
dbj|GAU21581.1| hypothetical protein TSUD_35440 [Trifolium subte...   200   4e-78
gb|PNX88760.1| copia-type polyprotein, partial [Trifolium pratense]   184   3e-77
dbj|GAU45007.1| hypothetical protein TSUD_87980 [Trifolium subte...   176   4e-74
gb|PNY14408.1| copia-type polyprotein [Trifolium pratense]            178   4e-73
gb|KYP57480.1| Retrovirus-related Pol polyprotein from transposo...   233   3e-72
dbj|GAU29997.1| hypothetical protein TSUD_160820 [Trifolium subt...   201   2e-70
gb|KYP43087.1| Retrovirus-related Pol polyprotein from transposo...   232   8e-68
gb|PNX95857.1| copia-type polyprotein [Trifolium pratense]            182   1e-67
gb|PNX91151.1| copia-type polyprotein, partial [Trifolium pratense]   219   2e-64
gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinen...   230   2e-64
gb|PRQ38021.1| putative RNA-directed DNA polymerase [Rosa chinen...   226   3e-64
gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinen...   230   5e-64
gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinen...   230   5e-64
gb|PNX61303.1| copia-type polyprotein, partial [Trifolium pratense]   212   6e-63
gb|PNX93789.1| copia-type polyprotein [Trifolium pratense]            227   7e-63
emb|CAN76379.1| hypothetical protein VITISV_017862 [Vitis vinifera]   221   8e-63
gb|PNX96091.1| retrotransposon-related protein [Trifolium pratense]   227   9e-63
gb|KYP44457.1| Retrovirus-related Pol polyprotein from transposo...   221   1e-62

>dbj|GAU31045.1| hypothetical protein TSUD_214810 [Trifolium subterraneum]
          Length = 1248

 Score =  222 bits (566), Expect(2) = 1e-83
 Identities = 102/170 (60%), Positives = 130/170 (76%)
 Frame = +2

Query: 2   KDMVRGLPKIEKSTKVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRH 181
           K+MV+GLP ++++T+ CEDC+IGKH R+  P  + WRA+  LQL+H DICGPI P SN  
Sbjct: 391 KEMVKGLPVLQETTETCEDCIIGKHQRDSIPMSANWRATEELQLVHSDICGPINPTSNGG 450

Query: 182 KRYFLTFVDDYSRKAWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHE 361
            RYF+TF DD+SRK W   LTEKS+AL  FK+FKA  E ES   +K LRTDRGGE TS E
Sbjct: 451 SRYFITFTDDFSRKTWTYVLTEKSNALTIFKKFKAITENESNCKLKCLRTDRGGEFTSTE 510

Query: 362 FDKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILSHKKVPKNY 511
           F+ FC + GIKRQLTT YTPQ NGV+ERK+R+IM+MV+S+++ K VPK +
Sbjct: 511 FNDFCSEHGIKRQLTTAYTPQQNGVSERKNRTIMNMVRSMIAEKGVPKRF 560



 Score =  117 bits (294), Expect(2) = 1e-83
 Identities = 74/187 (39%), Positives = 102/187 (54%), Gaps = 12/187 (6%)
 Frame = +1

Query: 541  DNKSLKCVLLGINEESKAYKLYDPINKKILVSRDVIFDEDEQWNWETN------SVES-- 696
            D KS+KCV LGI++ESKAYKLYDP++KKI++SRDVIFDE + W+W         S+E   
Sbjct: 591  DPKSVKCVHLGISDESKAYKLYDPVSKKIIISRDVIFDETKGWDWNEKPTKQRISIEDHA 650

Query: 697  -SKATTSETALXXXXXXXXXXXXXXXXXXXXXXXXPSSNSATGNSDETTETEAVPETSAS 873
             S AT SET                            S++ +  +DE   T   P     
Sbjct: 651  ESSATVSETDSEWQEPTQADGVNVTNEVINDHV----SDTESSENDEDVVTNLGP----- 701

Query: 874  RRTKKKPAYLSDYV--LKSEEVDEF-SLAILTQVEDPTSYEEAMKDDKWNKTMQIEIDSI 1044
             R ++ PA+  D+V  L+ +E +E  +L + +   DP +YEEA K + W KTM  EI+SI
Sbjct: 702  -RVRRPPAWTRDFVTNLEHQEDEELQNLVMFSNESDPRTYEEAAKFEVWRKTMDQEIESI 760

Query: 1045 ERNQTWE 1065
            E+N TWE
Sbjct: 761  EKNDTWE 767


>dbj|GAU27929.1| hypothetical protein TSUD_160240 [Trifolium subterraneum]
          Length = 1197

 Score =  211 bits (536), Expect(2) = 1e-81
 Identities = 100/170 (58%), Positives = 127/170 (74%)
 Frame = +2

Query: 2   KDMVRGLPKIEKSTKVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRH 181
           KDMV+GLP + +  + C DC++GK HRE  PK++ WRA+  LQLIH DICGPI P SN  
Sbjct: 371 KDMVKGLPALRELNEKCTDCLMGKQHREVIPKQAKWRATAKLQLIHYDICGPINPSSNGG 430

Query: 182 KRYFLTFVDDYSRKAWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHE 361
           KRYFLTF DD+SRK WV  L EKS A   FK FKA VE ESG  I++LRT RGGE TS  
Sbjct: 431 KRYFLTFTDDFSRKTWVYILKEKSKAFATFKNFKAMVELESGCMIQSLRTYRGGEFTSSA 490

Query: 362 FDKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILSHKKVPKNY 511
           F++FC+  GIKRQLTT YTPQ NGV+ERK+R+++++V+S+L+ + V K +
Sbjct: 491 FNEFCISEGIKRQLTTAYTPQQNGVSERKNRTLLNIVRSMLASRNVHKRF 540



 Score =  122 bits (307), Expect(2) = 1e-81
 Identities = 68/193 (35%), Positives = 102/193 (52%), Gaps = 4/193 (2%)
 Frame = +1

Query: 499  SKELHVLDAKRKKLDNKSLKCVLLGINEESKAYKLYDPINKKILVSRDVIFDEDEQWNWE 678
            S+ +H+ D  RKKLD+KS+KCV LGI+ ESKAY+LY+PI  KI++SRD +FDE + WNW+
Sbjct: 559  SEYVHIPDNHRKKLDSKSIKCVHLGISHESKAYRLYNPIENKIVISRDCVFDESKSWNWD 618

Query: 679  TNSVESSKATTSETAL--XXXXXXXXXXXXXXXXXXXXXXXXPSSNSATGNSDETTETEA 852
             N  E+ K    +  L                             +     ++  +++ +
Sbjct: 619  -NCEENYKHHIDDHELLDEEVTDNVPTNEENAMTDNDSTDGEVQGHQVIPPNEVVSDSSS 677

Query: 853  VPETSASRRTKKKPAYLSDYVL--KSEEVDEFSLAILTQVEDPTSYEEAMKDDKWNKTMQ 1026
              +T    R +K P +  D+VL  ++EE  E    ++    DP +YEEA K  KW   M 
Sbjct: 678  DDDTELGPRIRKTPGHFRDFVLGSEAEEEQELQNLVVYSSNDPANYEEASKSLKWKHAMD 737

Query: 1027 IEIDSIERNQTWE 1065
            +EI++IE N TWE
Sbjct: 738  VEIEAIEANGTWE 750


>dbj|GAU21581.1| hypothetical protein TSUD_35440 [Trifolium subterraneum]
          Length = 1283

 Score =  200 bits (509), Expect(2) = 4e-78
 Identities = 92/162 (56%), Positives = 119/162 (73%)
 Frame = +2

Query: 2   KDMVRGLPKIEKSTKVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRH 181
           K+MV+GLP +E+  + C DC+ GK HR+  PK++ WRA   L+L+H DICGP+ P SN  
Sbjct: 416 KEMVKGLPPLEELNEHCVDCLTGKQHRDAIPKQAVWRAKLKLELVHSDICGPLNPISNGG 475

Query: 182 KRYFLTFVDDYSRKAWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHE 361
            RYF+TF DD+SRK W  FL EKSSAL+ FK FK  VEKESG  I+ LRTDRGGE  S  
Sbjct: 476 NRYFITFTDDFSRKTWTYFLKEKSSALDTFKMFKPMVEKESGCAIQNLRTDRGGEFLSTA 535

Query: 362 FDKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILS 487
           F+ FC + GIKRQLTT YTPQ NGV+ERK+R++++M   +++
Sbjct: 536 FNDFCSNQGIKRQLTTAYTPQQNGVSERKNRTLLNMATHVMN 577



 Score =  121 bits (303), Expect(2) = 4e-78
 Identities = 71/191 (37%), Positives = 101/191 (52%), Gaps = 6/191 (3%)
 Frame = +1

Query: 511  HVLDAKRKKLDNKSLKCVLLGINEESKAYKLYDPINKKILVSRDVIFDEDEQWNWETNSV 690
            HV D +R KLD+KS+KCV LG+++ESKAYKLYDPI KKI++SRDVIF+E+  W+W +   
Sbjct: 613  HVPDKQRTKLDDKSIKCVHLGVSDESKAYKLYDPIKKKIIISRDVIFEENHSWDWNSEGK 672

Query: 691  ESSKATTSETALXXXXXXXXXXXXXXXXXXXXXXXXPSSNSATGNSDETTETEAVPETSA 870
            + S    S+  +                        P ++     +  + + EA P   +
Sbjct: 673  KRSDKQDSDDDI------EVETTSGANTPIVNTNEMPENDHMVVENTSSDDEEAEPSQVS 726

Query: 871  SRRTKKKPAYLSDYVLKSE-EVDEF-----SLAILTQVEDPTSYEEAMKDDKWNKTMQIE 1032
              R ++    L D V  S+ E DE      +LA+ T   DP S+ EA K D W K M  E
Sbjct: 727  VTRIRRPSTRLRDNVTGSDLEEDESTENFQNLAVYTTNNDPKSFGEAEKLDVWRKAMDQE 786

Query: 1033 IDSIERNQTWE 1065
            +++IE N TWE
Sbjct: 787  MEAIENNMTWE 797


>gb|PNX88760.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 364

 Score =  184 bits (468), Expect(2) = 3e-77
 Identities = 89/147 (60%), Positives = 109/147 (74%)
 Frame = +2

Query: 71  KHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRHKRYFLTFVDDYSRKAWVNFLTEK 250
           KHHR+  PK + WRAS+ L+LIH DICGPI P SN   RYF+TF D +SRK W   L +K
Sbjct: 2   KHHRDSIPKTTSWRASNKLELIHSDICGPINPSSNGGCRYFITFTDGFSRKTWTYPLKDK 61

Query: 251 SSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHEFDKFCVDSGIKRQLTTIYTPQLN 430
           SSA E F++FKA VEKES   IK LRTDRGGE TS  F+ FC + GIKRQLT  YTPQ N
Sbjct: 62  SSAFEVFRRFKALVEKESNHQIKCLRTDRGGEFTSSLFNDFCSEHGIKRQLTAAYTPQQN 121

Query: 431 GVAERKSRSIMDMVKSILSHKKVPKNY 511
           GV+ERK+R++M+MV+S++S   VPK +
Sbjct: 122 GVSERKNRTLMNMVRSMMSGMNVPKRF 148



 Score =  134 bits (337), Expect(2) = 3e-77
 Identities = 74/188 (39%), Positives = 102/188 (54%), Gaps = 3/188 (1%)
 Frame = +1

Query: 511  HVLDAKRKKLDNKSLKCVLLGINEESKAYKLYDPINKKILVSRDVIFDEDEQWNWETNSV 690
            HV D  RKKLD KS+KC+ LG++EESKAYKLYDPI KKI++SRDV+FDE + W W     
Sbjct: 168  HVPDVHRKKLDPKSIKCIHLGVSEESKAYKLYDPIQKKIIISRDVVFDEKQGWKWNE--- 224

Query: 691  ESSKATTSETALXXXXXXXXXXXXXXXXXXXXXXXXPSSNSATGNSDETTETEAVPETSA 870
                 T+ +  +                        P+  S +     + E +   E + 
Sbjct: 225  -----TSDKQEIQIIDANGEDSAQAEQVAEDPVTTEPAVQSDSDMDTTSEEDDDNTENAI 279

Query: 871  SRRTKKKPAYLSDYVLKSEEVDEF---SLAILTQVEDPTSYEEAMKDDKWNKTMQIEIDS 1041
             +R +K P ++ DYV  SE  +E    +LA+    EDPT +EEA+K   W + M  EI+S
Sbjct: 280  GQRARKPPGWMRDYVTGSELQEEEQLQNLAVFCNSEDPTCFEEAVKLAVWREAMDQEIES 339

Query: 1042 IERNQTWE 1065
            IERN+TWE
Sbjct: 340  IERNRTWE 347


>dbj|GAU45007.1| hypothetical protein TSUD_87980 [Trifolium subterraneum]
          Length = 1596

 Score =  176 bits (447), Expect(2) = 4e-74
 Identities = 83/159 (52%), Positives = 111/159 (69%)
 Frame = +2

Query: 2   KDMVRGLPKIEKSTKVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRH 181
           K+MV+GLP ++     C  C+ GK HRE  PK S WRA+  L L+H DICG I P+SN  
Sbjct: 498 KEMVKGLPHLQDKEDTCVSCLTGKQHREAIPKSSNWRATKPLVLVHSDICGLITPQSNGG 557

Query: 182 KRYFLTFVDDYSRKAWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHE 361
            +YF+TF DD+SRK W+  L  K+ A + FK+FK  VEKES A I  LRTDRGGE T + 
Sbjct: 558 NKYFITFTDDFSRKIWIYLLANKACAFDEFKKFKVLVEKESNAQITCLRTDRGGEFTYNA 617

Query: 362 FDKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKS 478
           F+++     IKR+LTT YTPQ NGV+ERK+R++++MV++
Sbjct: 618 FNEYYSAHEIKRRLTTAYTPQQNGVSERKNRTLLNMVRN 656



 Score =  131 bits (330), Expect(2) = 4e-74
 Identities = 75/193 (38%), Positives = 108/193 (55%), Gaps = 9/193 (4%)
 Frame = +1

Query: 514  VLDAKRKKLDNKSLKCVLLGINEESKAYKLYDPINKKILVSRDVIFDEDEQWN------W 675
            V +++RK LD+KS++C+LLG++EESK YKLYDP++K+I+VSRDVIFDE + WN       
Sbjct: 654  VRNSQRKNLDSKSIRCILLGLSEESKGYKLYDPVSKRIIVSRDVIFDESKGWNDDKKQTA 713

Query: 676  ETNSVESSKATTSETALXXXXXXXXXXXXXXXXXXXXXXXXPSSNSATGNSDETTETEAV 855
            ++N+ E +   T +T +                         S      +  E  E E+ 
Sbjct: 714  KSNNDEGTSLITDDTEIYINEPGDFPFNEHITGQQVNEGNTDSEQHVEESGSEMDE-EST 772

Query: 856  PETSASRRTKKKPAYLSDYVLKSEEVDEF---SLAILTQVEDPTSYEEAMKDDKWNKTMQ 1026
                   R  +KP YLSD+V   EE+DE    +LA+    +DP +Y+EA+K D W + M 
Sbjct: 773  DGDELPPRVVRKPGYLSDFV-SGEEIDESLMQNLAMSGTSDDPVTYDEAVKCDTWKQAMD 831

Query: 1027 IEIDSIERNQTWE 1065
             EID+IERN TWE
Sbjct: 832  QEIDAIERNDTWE 844


>gb|PNY14408.1| copia-type polyprotein [Trifolium pratense]
          Length = 1057

 Score =  178 bits (452), Expect(2) = 4e-73
 Identities = 84/160 (52%), Positives = 113/160 (70%)
 Frame = +2

Query: 2   KDMVRGLPKIEKSTKVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRH 181
           K+MV+GLP+++ +   C DC+ GK H +  PK++ WRA   L+L+H DI GP+ P+ N  
Sbjct: 421 KNMVKGLPELKDNDDKCNDCLSGKQHGDSIPKQANWRAPQKLELVHSDIYGPLNPKFNGG 480

Query: 182 KRYFLTFVDDYSRKAWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHE 361
             YF+TF +  +RK W  F+ EKSSA E FK+FK+  EKESG  IK LRTDRGGE TS  
Sbjct: 481 NTYFITFTNYLTRKTWTYFMQEKSSAFELFKKFKSLDEKESGCLIKCLRTDRGGEFTSTM 540

Query: 362 FDKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSI 481
           F+  C   GIKRQLT  YTPQ NGV+ERK++++++MV+SI
Sbjct: 541 FNDLCSSQGIKRQLTASYTPQQNGVSERKNKTLLNMVRSI 580



 Score =  126 bits (317), Expect(2) = 4e-73
 Identities = 68/192 (35%), Positives = 107/192 (55%), Gaps = 6/192 (3%)
 Frame = +1

Query: 508  LHVLDAKRKKLDNKSLKCVLLGINEESKAYKLYDPINKKILVSRDVIFDEDEQWNWETNS 687
            +H+ DA+RKKLD KS+KC+ LG++EESKAYKLY+P  KKI+VSR V+F+E+++W+W+   
Sbjct: 614  VHIPDAQRKKLDRKSIKCIHLGVSEESKAYKLYNPKEKKIIVSRVVVFEENKRWHWD-KK 672

Query: 688  VESSKATTSETALXXXXXXXXXXXXXXXXXXXXXXXXPSSNSATGNSDETTETEAVPETS 867
            VE+     +E  +                          +    GN +   + E   + S
Sbjct: 673  VENEDDNHNEADIDTNGI--------------------DNEDVNGNHESDMDLENNSDES 712

Query: 868  ASRRTKKKPAYLSDYVLKSEEVD------EFSLAILTQVEDPTSYEEAMKDDKWNKTMQI 1029
             S R ++   Y +DYV  +E++D        ++A+ +  EDP +YEEA K   W + M+ 
Sbjct: 713  LSPRQRRPLGYPNDYVTGTEKLDNIDQLQNLAIAMFSTSEDPNTYEEATKSKVWREAMES 772

Query: 1030 EIDSIERNQTWE 1065
            EI++IE N TW+
Sbjct: 773  EINAIESNDTWQ 784


>gb|KYP57480.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 216

 Score =  233 bits (593), Expect = 3e-72
 Identities = 112/169 (66%), Positives = 131/169 (77%)
 Frame = +2

Query: 5   DMVRGLPKIEKSTKVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRHK 184
           +MV GLP++  ST +C DCV GK HREP PKKS WRAS  LQLIH DICGPI P SN  K
Sbjct: 14  NMVHGLPELPASTIMCSDCVNGKQHREPMPKKSKWRASQKLQLIHADICGPITPASNNQK 73

Query: 185 RYFLTFVDDYSRKAWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHEF 364
           RYFL F+DDYSRK+WV FL EKS AL  FK FK  VEKESG  +K  RTDRGGE TS EF
Sbjct: 74  RYFLCFIDDYSRKSWVYFLLEKSEALYHFKCFKTLVEKESGLPVKVFRTDRGGEFTSSEF 133

Query: 365 DKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILSHKKVPKNY 511
           ++FC  +GIKR+LTT YTPQ NGVAERK+R+IM++V+S+LS K +PK +
Sbjct: 134 NEFCELNGIKRKLTTAYTPQQNGVAERKNRTIMNLVRSMLSEKNIPKTF 182


>dbj|GAU29997.1| hypothetical protein TSUD_160820 [Trifolium subterraneum]
          Length = 1245

 Score =  201 bits (511), Expect(2) = 2e-70
 Identities = 93/170 (54%), Positives = 123/170 (72%)
 Frame = +2

Query: 2   KDMVRGLPKIEKSTKVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRH 181
           KDMV+GLP+++     C  C+ GK HRE  PK S WRA+  L+L+H DICGPI P+SN  
Sbjct: 400 KDMVQGLPQLQDMEDTCVSCLTGKQHREAIPKSSNWRATKPLELVHSDICGPITPQSNGG 459

Query: 182 KRYFLTFVDDYSRKAWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHE 361
            RYF+TF DD+SRK W+  L  K+SA + FK+FK  VEKES + I  LRTDRGGE TS+ 
Sbjct: 460 SRYFITFTDDFSRKTWIYLLVNKASAFDEFKKFKVLVEKESNSQIMCLRTDRGGEFTSNV 519

Query: 362 FDKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILSHKKVPKNY 511
           F++FC    IK QL T YTPQ NGV+ERK+R++++MV+S+L+ + VPK +
Sbjct: 520 FNEFCSIHSIKTQLRTAYTPQQNGVSERKNRTLLNMVRSMLAGRNVPKTF 569



 Score = 95.1 bits (235), Expect(2) = 2e-70
 Identities = 58/168 (34%), Positives = 83/168 (49%), Gaps = 7/168 (4%)
 Frame = +1

Query: 583  ESKAYKLYDPINKKILVSRDVIFDEDEQWNWETNSVESSKATTS---ETALXXXXXXXXX 753
            +SK YKLYDP++++++VSRDVIFDE + WN     ++ SK  TS   +            
Sbjct: 601  KSKGYKLYDPVSQRVIVSRDVIFDESKGWN--DAQIQGSKQMTSLNNDEGTSQTNEDVEI 658

Query: 754  XXXXXXXXXXXXXXXPSSNSATGNSDETTETEAVPETSASRRTKKKPAYLSDYVLKSEEV 933
                             SN    +SD+  + E+        R  +KP YL DY    EE 
Sbjct: 659  VQNDEEYNPYVNTNDQHSNDNNTDSDQYVDEESTDSDELPPRIGRKPGYLDDYT-SGEEF 717

Query: 934  DEFS----LAILTQVEDPTSYEEAMKDDKWNKTMQIEIDSIERNQTWE 1065
            DE +    LA+     DP +Y EA+K ++W + M  EI++IERN TWE
Sbjct: 718  DEAAQMQNLAMANINNDPITYYEAVKCEEWKQAMDQEIEAIERNDTWE 765


>gb|KYP43087.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 551

 Score =  232 bits (591), Expect = 8e-68
 Identities = 113/171 (66%), Positives = 134/171 (78%), Gaps = 1/171 (0%)
 Frame = +2

Query: 2   KDMVRGLPKIEKST-KVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNR 178
           K MVRGLP    +T KVCEDC+ GK HR+P PKKS WRA   L+LIH DICGPI P SN 
Sbjct: 143 KGMVRGLPSSLSTTEKVCEDCMKGKQHRDPIPKKSQWRAKQKLELIHADICGPIIPSSNS 202

Query: 179 HKRYFLTFVDDYSRKAWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSH 358
            KRYFL F+DDY+RKAW+ FLTEKS A   F+ FK  VEKESG  IK LRTDRGGE TS 
Sbjct: 203 QKRYFLCFIDDYTRKAWIYFLTEKSEAFHYFQCFKNLVEKESGLMIKCLRTDRGGEFTSS 262

Query: 359 EFDKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILSHKKVPKNY 511
           EF++FC  +GIKRQLTT YTPQ NGVAERK+R+IM++V+++LS KK+PK++
Sbjct: 263 EFNEFCQKTGIKRQLTTAYTPQQNGVAERKNRTIMNLVRTLLSEKKLPKSF 313



 Score =  124 bits (311), Expect = 9e-28
 Identities = 75/194 (38%), Positives = 99/194 (51%), Gaps = 8/194 (4%)
 Frame = +1

Query: 508  LHVLDAKRKKLDNKSLKCVLLGINEESKAYKLYDPINKKILVSRDVIFDEDEQWNWETNS 687
            +HV DA R KL+NKS KCVLLG++EESK Y+LY+PI +KI++SRDV+F+ED QWNW  + 
Sbjct: 361  VHVPDAGRTKLENKSCKCVLLGMSEESKGYRLYNPITRKIVISRDVVFEEDTQWNWNVSH 420

Query: 688  VESSKA-----TTSETALXXXXXXXXXXXXXXXXXXXXXXXXPSSNSATGNSDETTETEA 852
             E   A      T  TA                           SN   GN  +  E + 
Sbjct: 421  REEQFADLEYGDTKNTA----------------EVEEENTADGESNDEEGNQSQNEENKV 464

Query: 853  VPETSASRRTKKKPAYLSDYVLKSEEVDEFSLAI---LTQVEDPTSYEEAMKDDKWNKTM 1023
            + +     R +  P ++ DYV   EE  E   AI   L    DP S+E  +K  KW + M
Sbjct: 465  INDERG--RNRHPPGWMRDYV-DGEEFSESEDAINMALIDCTDPESFEVVVKSSKWRQAM 521

Query: 1024 QIEIDSIERNQTWE 1065
              EI+SI +N TWE
Sbjct: 522  DAEINSIVKNGTWE 535


>gb|PNX95857.1| copia-type polyprotein [Trifolium pratense]
          Length = 1051

 Score =  182 bits (462), Expect(2) = 1e-67
 Identities = 89/158 (56%), Positives = 115/158 (72%)
 Frame = +2

Query: 2   KDMVRGLPKIEKSTKVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRH 181
           K MV+GL  +++  + C+ C+ GK  R+  PK+S WRAS  L+LIH DICGPI  ESN  
Sbjct: 303 KKMVQGLLYVKEPKQRCDRCMKGKQQRDFVPKESSWRASERLELIHSDICGPINLESNGK 362

Query: 182 KRYFLTFVDDYSRKAWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHE 361
           K+YF+TF+DD SRK W+ FL+EKS AL  F++FKA VE E+   I  LRTDRGGE TS  
Sbjct: 363 KKYFITFIDDLSRKTWIYFLSEKSEALSTFQKFKAMVENETKLKIMCLRTDRGGEYTSTI 422

Query: 362 FDKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVK 475
           F+++C   GIKRQLT  YTP  NGV+ERK+R+IM+MV+
Sbjct: 423 FNEYCDSHGIKRQLTAAYTPHQNGVSERKNRTIMNMVR 460



 Score =  104 bits (260), Expect(2) = 1e-67
 Identities = 62/167 (37%), Positives = 88/167 (52%), Gaps = 7/167 (4%)
 Frame = +1

Query: 520 DAKRKKLDNKSLKCVLLGINEESKAYKLYDPINKKILVSRDVIFDEDEQWNWETNSVESS 699
           D  RKKLD+KS+ C+ LGI+EESKAYKL DP+ +KI++S+DV FDE +QWNW+T  ++  
Sbjct: 496 DNLRKKLDDKSIVCIYLGISEESKAYKLCDPLKRKIVISKDVKFDETKQWNWDTKEIDKG 555

Query: 700 K-------ATTSETALXXXXXXXXXXXXXXXXXXXXXXXXPSSNSATGNSDETTETEAVP 858
           K       +    T+                         P S    G+S+E       P
Sbjct: 556 KNSELIIDSYACSTSKHSDEENDDEHSDESQSDDVADQIVPDS----GDSNEEDNEYVQP 611

Query: 859 ETSASRRTKKKPAYLSDYVLKSEEVDEFSLAILTQVEDPTSYEEAMK 999
           +    +R  K+P YL D+V  ++E +  +LAI T   DP +YEEA K
Sbjct: 612 D----KRISKRPVYLDDFV--TDEAEMHNLAIFTPSTDPITYEEATK 652


>gb|PNX91151.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 430

 Score =  219 bits (559), Expect = 2e-64
 Identities = 101/170 (59%), Positives = 127/170 (74%)
 Frame = +2

Query: 2   KDMVRGLPKIEKSTKVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRH 181
           K+MV+GLP +++  +VC DC+ GK HRE  PKK  WR +  L+L+H DICGPI P SN  
Sbjct: 52  KEMVKGLPNLKEDNEVCSDCMTGKQHREVIPKKVNWRXTKXLELVHSDICGPINPASNGG 111

Query: 182 KRYFLTFVDDYSRKAWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHE 361
            +YF+TF DD++RK WV+ L  K+SA E FK+FKA  EKES   I TLRTDRGGE  S  
Sbjct: 112 NKYFVTFTDDFTRKTWVDILQSKASAFESFKRFKAVAEKESNCQILTLRTDRGGEFLSEA 171

Query: 362 FDKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILSHKKVPKNY 511
           F++FC D GIKRQLTT YTPQ NGV+ERK+R+IM+MV+ +LS KKVPK +
Sbjct: 172 FNRFCTDQGIKRQLTTAYTPQQNGVSERKNRTIMNMVRCMLSDKKVPKKF 221



 Score =  111 bits (278), Expect = 9e-24
 Identities = 66/172 (38%), Positives = 98/172 (56%), Gaps = 4/172 (2%)
 Frame = +1

Query: 508  LHVLDAKRKKLDNKSLKCVLLGINEESKAYKLYDPINKKILVSRDVIFDEDEQWNWETNS 687
            +HV DA+RKKLD+KS+KCV LG++EESKAYKLY+P +++I+VSRDV+FDE + WNW  NS
Sbjct: 269  VHVPDAQRKKLDDKSIKCVHLGVSEESKAYKLYNPADRRIIVSRDVVFDESKGWNWGENS 328

Query: 688  -VESSKATTSETALXXXXXXXXXXXXXXXXXXXXXXXXPSSNSATGNSDETTETEAVPET 864
              ++++   SE  +                        P S      SDE  E+    E 
Sbjct: 329  QAQATQYDNSENEV--YETDEEPAAGENVEADPQNITVPDS-----ESDEQYES----EE 377

Query: 865  SASRRTKKKPAYLSDYVLKSEEVDE---FSLAILTQVEDPTSYEEAMKDDKW 1011
                R  ++P YL+DYV+  E  +E    +LA+    +DP +++EA+K + W
Sbjct: 378  ELPPRVIRRPGYLNDYVIGQEIEEEDQLHNLAVFCNNDDPATFDEAVKHEVW 429


>gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1044

 Score =  230 bits (587), Expect = 2e-64
 Identities = 110/168 (65%), Positives = 130/168 (77%)
 Frame = +2

Query: 2   KDMVRGLPKIEKSTKVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRH 181
           + MV+GLP  + S+K+C+DC++GK HRE  PKKS WRASH LQLIH DICGPIKP SN  
Sbjct: 170 RKMVKGLPDFKMSSKLCKDCMVGKQHRESIPKKSMWRASHRLQLIHSDICGPIKPLSNSR 229

Query: 182 KRYFLTFVDDYSRKAWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHE 361
           KRY ++F+DDYSRK WV FL EKS A   FK FK  VEKE+G  I+ LRTDRGGE TS E
Sbjct: 230 KRYLISFIDDYSRKTWVYFLYEKSQAFTTFKSFKCLVEKETGDYIQCLRTDRGGEFTSQE 289

Query: 362 FDKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILSHKKVPK 505
           F+ FC   GI RQLT  YTPQ NGVAERK+R+IM+MV+S+LS K+VPK
Sbjct: 290 FNTFCSTHGISRQLTAAYTPQQNGVAERKNRTIMNMVRSMLSEKQVPK 337



 Score =  141 bits (356), Expect = 3e-33
 Identities = 77/189 (40%), Positives = 107/189 (56%), Gaps = 3/189 (1%)
 Frame = +1

Query: 508  LHVLDAKRKKLDNKSLKCVLLGINEESKAYKLYDPINKKILVSRDVIFDEDEQWNWETNS 687
            +H+ +AKRKKLD+KS KCVLLG+++ESKAY+LYDPI+++I+VSRDV+F+EDE W+W    
Sbjct: 387  VHIPEAKRKKLDDKSYKCVLLGVSKESKAYRLYDPISERIVVSRDVVFEEDENWDW---- 442

Query: 688  VESSKATTSETALXXXXXXXXXXXXXXXXXXXXXXXXPSSNSATGNSDETTETEAVPETS 867
                  T  E  L                          S     N+D+  E E + E  
Sbjct: 443  ----GRTAEEVRLDVLDWSDGEEEENESAQSEEENEFAQSEEENVNNDDAEEEEILEE-- 496

Query: 868  ASRRTKKKPAYLSDYVL---KSEEVDEFSLAILTQVEDPTSYEEAMKDDKWNKTMQIEID 1038
               RT+ +P ++ DYV     SEE +  ++ + T V DPT++EEA K  KW   M  EI+
Sbjct: 497  --GRTRMQPVWMQDYVSGEGLSEEEETNNIVMFTYVTDPTTFEEAFKSAKWKAAMDQEIE 554

Query: 1039 SIERNQTWE 1065
            +IERN TWE
Sbjct: 555  AIERNHTWE 563


>gb|PRQ38021.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 719

 Score =  226 bits (576), Expect = 3e-64
 Identities = 108/182 (59%), Positives = 136/182 (74%)
 Frame = +2

Query: 2   KDMVRGLPKIEKSTKVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRH 181
           + MV+GLP+I+ S +VC DC++GK  R+  PK S WRAS  LQL+H DICGPI P SN  
Sbjct: 462 RKMVKGLPQIKASARVCHDCLVGKQSRDSIPKSSQWRASQRLQLVHADICGPITPTSNSD 521

Query: 182 KRYFLTFVDDYSRKAWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHE 361
           KRY L+F+DD+SRK WV FLTEKS A   FK++K+ VEKE G  I  LRTDRGGE TS+E
Sbjct: 522 KRYVLSFIDDFSRKMWVYFLTEKSQAFTMFKRYKSLVEKEIGFPICCLRTDRGGEFTSNE 581

Query: 362 FDKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILSHKKVPKNYMSLMQRERNW 541
           F++FC  +GIKRQLT  YTPQ NGVAER++R++M++V+SILS KK+PK   S      NW
Sbjct: 582 FNEFCQSNGIKRQLTAAYTPQQNGVAERRNRTVMNLVRSILSEKKIPK---SFWPEAVNW 638

Query: 542 IT 547
           +T
Sbjct: 639 VT 640


>gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1302

 Score =  230 bits (587), Expect = 5e-64
 Identities = 109/168 (64%), Positives = 130/168 (77%)
 Frame = +2

Query: 2   KDMVRGLPKIEKSTKVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRH 181
           ++MV+GLP  +  +K+C+DC++GK HRE  PKKS WRASH LQLIH DICGPIKP SN  
Sbjct: 449 RNMVKGLPDFKMPSKLCKDCMVGKQHRESIPKKSMWRASHRLQLIHSDICGPIKPLSNNR 508

Query: 182 KRYFLTFVDDYSRKAWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHE 361
           KRY ++F+DDYSRK WV FL EKS A   FK FK  VEKE+G  I+ LRTDRGGE TS E
Sbjct: 509 KRYLISFIDDYSRKTWVYFLNEKSQAFTTFKSFKCLVEKETGDYIQCLRTDRGGEFTSQE 568

Query: 362 FDKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILSHKKVPK 505
           F+ FC   GI RQLT  YTPQ NGVAERK+R+IM+MV+S+LS K+VPK
Sbjct: 569 FNTFCSTHGISRQLTAAYTPQQNGVAERKNRTIMNMVRSMLSEKQVPK 616



 Score =  143 bits (361), Expect = 6e-34
 Identities = 78/189 (41%), Positives = 105/189 (55%), Gaps = 3/189 (1%)
 Frame = +1

Query: 508  LHVLDAKRKKLDNKSLKCVLLGINEESKAYKLYDPINKKILVSRDVIFDEDEQWNWETNS 687
            +H+ +AKRKKLDNKS KCVLLG++EESKAY+LYDPI+++I+VSRDV+F+EDE W W    
Sbjct: 666  VHIPEAKRKKLDNKSYKCVLLGVSEESKAYRLYDPISERIVVSRDVVFEEDESWEW---- 721

Query: 688  VESSKATTSETALXXXXXXXXXXXXXXXXXXXXXXXXPSSNSATGNSDETTETEAVPETS 867
                  T  E  L                          S     N+D+  E E + E  
Sbjct: 722  ----GRTAEEVRLDVLDWSDGEEEENESAQSEEENEYAQSEEENVNNDDAEEEEEILEEG 777

Query: 868  ASRRTKKKPAYLSDYVL---KSEEVDEFSLAILTQVEDPTSYEEAMKDDKWNKTMQIEID 1038
               RT+ +P ++ DYV     SEE +  ++ + T V DP ++EEA K  KW   M  EI+
Sbjct: 778  ---RTRMQPVWMQDYVSGEGLSEEEETNNVVMFTSVTDPATFEEAFKSAKWKAAMDQEIE 834

Query: 1039 SIERNQTWE 1065
            +IERN TWE
Sbjct: 835  AIERNHTWE 843


>gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1316

 Score =  230 bits (587), Expect = 5e-64
 Identities = 110/168 (65%), Positives = 130/168 (77%)
 Frame = +2

Query: 2   KDMVRGLPKIEKSTKVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRH 181
           + MV+GLP  + S+K+C+DC++GK HRE  PKKS WRASH LQLIH DICGPIKP SN  
Sbjct: 451 RKMVKGLPDFKMSSKLCKDCMVGKQHRESIPKKSMWRASHRLQLIHSDICGPIKPLSNSR 510

Query: 182 KRYFLTFVDDYSRKAWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHE 361
           KRY ++F+DDYSRK WV FL EKS A   FK FK  VEKE+G  I+ LRTDRGGE TS E
Sbjct: 511 KRYLISFIDDYSRKTWVYFLYEKSQAFTTFKSFKCLVEKETGDYIQCLRTDRGGEFTSQE 570

Query: 362 FDKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILSHKKVPK 505
           F+ FC   GI RQLT  YTPQ NGVAERK+R+IM+MV+S+LS K+VPK
Sbjct: 571 FNTFCSTHGISRQLTAAYTPQQNGVAERKNRTIMNMVRSMLSEKQVPK 618



 Score =  137 bits (344), Expect = 1e-31
 Identities = 75/189 (39%), Positives = 106/189 (56%), Gaps = 3/189 (1%)
 Frame = +1

Query: 508  LHVLDAKRKKLDNKSLKCVLLGINEESKAYKLYDPINKKILVSRDVIFDEDEQWNWETNS 687
            +H+ +AKRKKLD+KS KCVLLG+++ESKAY+LYDPI+++I+VSRDV+F+EDE W+W   +
Sbjct: 668  VHIPEAKRKKLDDKSYKCVLLGVSKESKAYRLYDPISERIVVSRDVVFEEDESWDWGRTA 727

Query: 688  VESSKATTSETALXXXXXXXXXXXXXXXXXXXXXXXXPSSNSATGNSDETTETEAVPETS 867
             E                                     S     N+D+  E E + E  
Sbjct: 728  EEE-----------------RLDVLDWSDGEEEENESAQSEEENVNNDDAEEEEILEE-- 768

Query: 868  ASRRTKKKPAYLSDYVL---KSEEVDEFSLAILTQVEDPTSYEEAMKDDKWNKTMQIEID 1038
               RT+ +P ++ DYV     SEE +  ++ + T V DPT++EEA K  KW   M  EI+
Sbjct: 769  --GRTRLQPIWMQDYVSGEGLSEEEETNNIVMFTSVTDPTTFEEAFKSAKWKAAMDQEIE 826

Query: 1039 SIERNQTWE 1065
            +IERN TWE
Sbjct: 827  AIERNHTWE 835


>gb|PNX61303.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 298

 Score =  212 bits (539), Expect = 6e-63
 Identities = 101/170 (59%), Positives = 126/170 (74%)
 Frame = +2

Query: 2   KDMVRGLPKIEKSTKVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRH 181
           + MV+GLP ++ S ++C DCVI KHHR+  PK + WRAS  L+LIH DICGPI P SN  
Sbjct: 115 RTMVKGLPILKDSAELCPDCVISKHHRDSIPKTASWRASSKLELIHSDICGPINPSSNGG 174

Query: 182 KRYFLTFVDDYSRKAWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHE 361
            RYF+TF DD+SRK W   L  KSSA E F++FKA VEKE    IK LRTDRGGE TS +
Sbjct: 175 CRYFITFTDDFSRKTWTYPLKNKSSAFEVFRKFKALVEKELDHQIKCLRTDRGGEFTSSQ 234

Query: 362 FDKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILSHKKVPKNY 511
           F+ FC + GIKRQLTT YTPQ NGV+ERK+R++M+MV+S++S   VPK +
Sbjct: 235 FNDFCSEHGIKRQLTTAYTPQQNGVSERKNRTLMNMVRSMMSGMNVPKRF 284


>gb|PNX93789.1| copia-type polyprotein [Trifolium pratense]
          Length = 1347

 Score =  227 bits (579), Expect = 7e-63
 Identities = 109/170 (64%), Positives = 132/170 (77%)
 Frame = +2

Query: 2   KDMVRGLPKIEKSTKVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRH 181
           K MV GLP I+   K+C +C+IGK HR+   KKS WRAS+ LQL+H DICGPIKPESN +
Sbjct: 452 KKMVNGLPSIQIPKKLCTECLIGKQHRDSMSKKSLWRASNKLQLVHADICGPIKPESNSN 511

Query: 182 KRYFLTFVDDYSRKAWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHE 361
           KRYFL+F+DD++RK W+ FL EKS A   FK FKA VEKESGA I +LRTDRGGE  S+E
Sbjct: 512 KRYFLSFIDDFTRKTWIYFLHEKSEAFAMFKNFKAYVEKESGAYITSLRTDRGGEFNSNE 571

Query: 362 FDKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILSHKKVPKNY 511
           F++FC   GI RQLT  YTPQ NGVAERK+R+IM+MV+S+L  KKVPK +
Sbjct: 572 FEEFCKVQGISRQLTAAYTPQQNGVAERKNRTIMNMVRSMLVEKKVPKMF 621



 Score =  136 bits (343), Expect = 1e-31
 Identities = 76/198 (38%), Positives = 112/198 (56%), Gaps = 13/198 (6%)
 Frame = +1

Query: 511  HVLDAKRKKLDNKSLKCVLLGINEESKAYKLYDPINKKILVSRDVIFDEDEQWNWETNSV 690
            H+ D KR KLD+KS KCVLLG+++ESKAYKLYDP++KKI++S+DVIF+ED  WNW+ N  
Sbjct: 670  HIPDQKRSKLDDKSKKCVLLGVSDESKAYKLYDPVSKKIIISKDVIFEEDVCWNWDNNK- 728

Query: 691  ESSKATTSETALXXXXXXXXXXXXXXXXXXXXXXXXPSSNSATGNSDETTET-EAVPETS 867
            +  +    E                            ++ +  GN+D+TT + E+   +S
Sbjct: 729  DERRVDVLEWKNDYENDIEEAIEGNEEVGNNGNEEEHNNGNEGGNNDDTTNSIESNSSSS 788

Query: 868  ASR----------RTKKKPAYLSDYVLKSEEVDEFSLAILTQV--EDPTSYEEAMKDDKW 1011
             S           R ++ P+YL+DY       DE +L  +  +  +DP S+EEA K +KW
Sbjct: 789  ESHEDESPNMVEGRVRRPPSYLADYETGEGLSDEDNLNAMMMLTEDDPLSFEEARKSNKW 848

Query: 1012 NKTMQIEIDSIERNQTWE 1065
               M+ EI+SIE+N+TWE
Sbjct: 849  RDAMKAEIESIEKNKTWE 866


>emb|CAN76379.1| hypothetical protein VITISV_017862 [Vitis vinifera]
          Length = 639

 Score =  221 bits (562), Expect = 8e-63
 Identities = 103/168 (61%), Positives = 128/168 (76%)
 Frame = +2

Query: 8   MVRGLPKIEKSTKVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRHKR 187
           MV GLP+ E S  VC DC++G  HR P PKKS WRA   LQLIH DICGPI P  N  KR
Sbjct: 436 MVNGLPQFEASKTVCTDCMVGTQHRNPIPKKSTWRACSKLQLIHADICGPITPILNSKKR 495

Query: 188 YFLTFVDDYSRKAWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHEFD 367
           Y ++F+DD+SRKAW+  L EKS AL  FKQ+K+CVEKE+ + IK LR +RGGE TS +F+
Sbjct: 496 YLISFIDDFSRKAWIYLLVEKSKALVIFKQYKSCVEKETSSYIKCLRINRGGEFTSQDFN 555

Query: 368 KFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILSHKKVPKNY 511
           +FC ++GIKRQL   YTPQ NGVAERK+R+IM+MV+S+LS KK+PK +
Sbjct: 556 EFCKENGIKRQLIVAYTPQQNGVAERKNRTIMNMVRSMLSKKKLPKTF 603


>gb|PNX96091.1| retrotransposon-related protein [Trifolium pratense]
          Length = 1326

 Score =  227 bits (578), Expect = 9e-63
 Identities = 105/170 (61%), Positives = 130/170 (76%)
 Frame = +2

Query: 2   KDMVRGLPKIEKSTKVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRH 181
           K+MVRGLP+   S+ +C +C+ GK HR+P PKKS WRA+  L+LIH D+CGPI P SN +
Sbjct: 448 KNMVRGLPQFSISSVICTNCINGKQHRDPIPKKSNWRATQKLELIHADVCGPISPSSNSN 507

Query: 182 KRYFLTFVDDYSRKAWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHE 361
           KRY L F+DDYSRK+WV FL EKS AL  FK FK  VEKE+   IK LRTDRGGE  S+E
Sbjct: 508 KRYILLFIDDYSRKSWVYFLVEKSEALNSFKCFKTMVEKEAEMAIKCLRTDRGGEFNSNE 567

Query: 362 FDKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILSHKKVPKNY 511
           F+ FC  SG+KRQLTT YTPQ NGVAERK+R++M+MV+S+L  K +PK +
Sbjct: 568 FNDFCKQSGVKRQLTTAYTPQQNGVAERKNRTVMNMVRSLLFDKNIPKTF 617



 Score =  119 bits (298), Expect = 1e-25
 Identities = 69/194 (35%), Positives = 105/194 (54%), Gaps = 9/194 (4%)
 Frame = +1

Query: 508  LHVLDAKRKKLDNKSLKCVLLGINEESKAYKLYDPINKKILVSRDVIFDEDEQWNWETNS 687
            +HV +AKR KLD++S+ CVLLG++EESK Y+ +DP++KKI+VSRDVIF+ED+QW+WE   
Sbjct: 665  VHVPEAKRTKLDSRSITCVLLGVSEESKGYRFFDPVSKKIVVSRDVIFEEDKQWDWE--- 721

Query: 688  VESSKATTSETALXXXXXXXXXXXXXXXXXXXXXXXXPSSNSATGNSDETTETEAVPETS 867
                K T ++                            S N   GN ++  E     E  
Sbjct: 722  ---EKQTVADLEWNDGENEERVSENDNEERV-------SENDNQGNVEKEREVIREEEHD 771

Query: 868  ASR--------RTKKKPAYLSDYVL-KSEEVDEFSLAILTQVEDPTSYEEAMKDDKWNKT 1020
            ++         R ++ P ++SD+   +    DE  +A++  + DP  +EEA+K + W   
Sbjct: 772  SNEGEEIVKEYRERRPPGWMSDFESGEGLSEDEAHMALMVSI-DPLCFEEAVKSENWRLA 830

Query: 1021 MQIEIDSIERNQTW 1062
            M+ EI SIE+NQTW
Sbjct: 831  MEKEIKSIEKNQTW 844


>gb|KYP44457.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 690

 Score =  221 bits (564), Expect = 1e-62
 Identities = 109/171 (63%), Positives = 129/171 (75%), Gaps = 1/171 (0%)
 Frame = +2

Query: 2   KDMVRGLPKIEKSTK-VCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNR 178
           K MVRGLP    +T+ VCEDC  GK HR+P PKKS WRA   L+LIH DICGPI P SN 
Sbjct: 451 KGMVRGLPSSLSTTENVCEDCTKGKQHRDPIPKKSQWRAKQKLELIHADICGPITPSSNS 510

Query: 179 HKRYFLTFVDDYSRKAWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSH 358
            KRYFL F+DDYSRK W+ FLT+KS A   F+ FK  VEKESG  IK L TDRGGE TS 
Sbjct: 511 QKRYFLCFIDDYSRKTWIYFLTKKSEAFHYFQCFKNLVEKESGLMIKCLITDRGGEFTSL 570

Query: 359 EFDKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILSHKKVPKNY 511
           EF++FC  +GIKRQLT  YTPQ NGVAERK+R+IM++V ++LS KK+PK++
Sbjct: 571 EFNEFCQKTGIKRQLTIAYTPQQNGVAERKNRTIMNLVTTLLSEKKLPKSF 621