BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus22_contig00027289
         (1022 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNY05029.1| ribonuclease H [Trifolium pratense]                     83   5e-37
dbj|GAU38174.1| hypothetical protein TSUD_264000 [Trifolium subt...    73   2e-36
gb|PNX73974.1| ribonuclease H, partial [Trifolium pratense]            87   1e-34
gb|PNY09827.1| ribonuclease H [Trifolium pratense]                    100   4e-34
dbj|GAU25119.1| hypothetical protein TSUD_274080 [Trifolium subt...    85   3e-33
dbj|GAU47735.1| hypothetical protein TSUD_386940 [Trifolium subt...    84   5e-33
dbj|GAU25690.1| hypothetical protein TSUD_266170 [Trifolium subt...    91   2e-32
dbj|GAU43110.1| hypothetical protein TSUD_373050 [Trifolium subt...    97   4e-32
dbj|GAU27881.1| hypothetical protein TSUD_159750 [Trifolium subt...    78   2e-31
dbj|GAU38652.1| hypothetical protein TSUD_276920 [Trifolium subt...    91   2e-31
gb|PNY06394.1| ribonuclease H [Trifolium pratense]                     82   8e-31
gb|PNY12727.1| ribonuclease H [Trifolium pratense]                     75   1e-30
gb|PNX87107.1| ribonuclease H, partial [Trifolium pratense]            87   1e-30
dbj|GAU29496.1| hypothetical protein TSUD_360410 [Trifolium subt...    96   2e-30
dbj|GAU44056.1| hypothetical protein TSUD_399540 [Trifolium subt...    84   1e-29
dbj|GAU28852.1| hypothetical protein TSUD_21890 [Trifolium subte...    92   3e-29
gb|PNX95738.1| ribonuclease H, partial [Trifolium pratense]            91   4e-29
gb|PNX84009.1| ribonuclease H [Trifolium pratense]                     72   5e-29
dbj|GAU34029.1| hypothetical protein TSUD_16170 [Trifolium subte...    89   5e-29
dbj|GAU38148.1| hypothetical protein TSUD_395930 [Trifolium subt...    78   8e-29

>gb|PNY05029.1| ribonuclease H [Trifolium pratense]
          Length = 468

 Score = 83.2 bits (204), Expect(3) = 5e-37
 Identities = 41/110 (37%), Positives = 65/110 (59%)
 Frame = +2

Query: 395 GAKGVRKIT*VKWSKMCKPKSEGGIRVKNLKLFNLSLLGKWRWRFLNCTTNFWKEILLAK 574
           G +G  KI  V+WS +CK K +GG+ V++++L N+SLL KWRWR L+   + WKE+L+A+
Sbjct: 174 GVRGGNKINWVRWSVVCKEKKKGGLGVRDIRLVNISLLSKWRWRLLSPGRSLWKEVLVAR 233

Query: 575 YGVCS*GRDDFIRYGALSKVFLW*RDICRVGSLGDNEAGWFQESLVRMKG 724
           YG       D+           W +DIC +  + +++  W  ES++R  G
Sbjct: 234 YGNHIIHNVDWSGNRFPISASSWWKDICSLDKVVESK-NWLVESVIRKLG 282



 Score = 72.8 bits (177), Expect(3) = 5e-37
 Identities = 40/87 (45%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
 Frame = +1

Query: 160 RVLGLPVGGNQRRATTWAPLLDSLRSRLASWKIGMSVLVAGLSYLFLS*NIIHIF-LSFM 336
           + LGLP+G N +  +TW PL++ LR+RL SW+     L   +  +    N I +F LSF+
Sbjct: 94  KYLGLPIGANPKSLSTWDPLVEHLRNRLCSWRNKHISLGGRVVMINAVLNAIPVFYLSFL 153

Query: 337 KMHNKVWKSVVRIQRAFSFGG-KGGEE 414
           KM  KVWK VVRIQR F +GG +GG +
Sbjct: 154 KMPRKVWKKVVRIQREFLWGGVRGGNK 180



 Score = 48.9 bits (115), Expect(3) = 5e-37
 Identities = 23/59 (38%), Positives = 34/59 (57%)
 Frame = +1

Query: 838  IYSIRSAYSILSADPSRASRLLVHQTLLLRSLWKSLAPSKVVAFSWQLTLDRILLRENM 1014
            ++S+ S+Y  L  +      L     ++   +W+S APSKV+AFSWQL  DRI  R N+
Sbjct: 283  VFSVNSSYKFLVEELRVEDVLEEDARIIFEKIWESPAPSKVIAFSWQLLYDRIPTRSNL 341


>dbj|GAU38174.1| hypothetical protein TSUD_264000 [Trifolium subterraneum]
          Length = 764

 Score = 72.8 bits (177), Expect(4) = 2e-36
 Identities = 37/97 (38%), Positives = 54/97 (55%)
 Frame = +2

Query: 395 GAKGVRKIT*VKWSKMCKPKSEGGIRVKNLKLFNLSLLGKWRWRFLNCTTNFWKEILLAK 574
           G     KI+ V W  +C+P +EGG+ VK+L++ N+SLL KW+WR L+   + WK +L  +
Sbjct: 405 GVASTSKISWVNWRDVCRPNNEGGLGVKDLRIMNISLLTKWKWRLLSEGNSIWKFVLRDR 464

Query: 575 YGVCS*GRDDFIRYGALSKVFLW*RDICRVGSLGDNE 685
           YG    G     R    +KV  W  D+  VG +G  E
Sbjct: 465 YGGGESGVSWMSRSLPTNKVSPWWNDLMVVGLVGGVE 501



 Score = 65.5 bits (158), Expect(4) = 2e-36
 Identities = 37/81 (45%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
 Frame = +1

Query: 166 LGLPVGGNQRRATTWAPLLDSLRSRLASWK---IGMSVLVAGLSYLFLS*NIIHIFLSFM 336
           LGLPVG N RR  TW P+L+ L+ RLASWK   + +   V  L+ +  +  I   +LS  
Sbjct: 327 LGLPVGANPRRMATWNPVLEVLQKRLASWKNKYVSLGGRVVLLNSVLAA--IPIFYLSLF 384

Query: 337 KMHNKVWKSVVRIQRAFSFGG 399
           KM   VWK +VR+QR F +GG
Sbjct: 385 KMPVGVWKKIVRLQRKFLWGG 405



 Score = 46.2 bits (108), Expect(4) = 2e-36
 Identities = 27/67 (40%), Positives = 38/67 (56%)
 Frame = +1

Query: 820  GGLFDEIYSIRSAYSILSADPSRASRLLVHQTLLLRSLWKSLAPSKVVAFSWQLTLDRIL 999
            GGLF    S+R+ Y  L+        L +     L  +WKS APSKV+ FSWQL L R+ 
Sbjct: 563  GGLF----SVRALYCYLAGIIVPPIVLDLELVTDLGFVWKSFAPSKVIVFSWQLLLRRLP 618

Query: 1000 LRENMFR 1020
             ++N+F+
Sbjct: 619  TKKNLFK 625



 Score = 38.5 bits (88), Expect(4) = 2e-36
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +3

Query: 705 HLYV*KVGDGNATFF*HDTWVGTQPL 782
           H +  K+G+G+ T F HD WVGTQPL
Sbjct: 505 HFFFKKIGNGDETSFWHDVWVGTQPL 530


>gb|PNX73974.1| ribonuclease H, partial [Trifolium pratense]
          Length = 647

 Score = 86.7 bits (213), Expect(3) = 1e-34
 Identities = 52/148 (35%), Positives = 82/148 (55%), Gaps = 5/148 (3%)
 Frame = +2

Query: 395 GAKGVRKIT*VKWSKMCKPKSEGGIRVKNLKLFNLSLLGKWRWRFLNCTTNFWKEILLAK 574
           G     KI+ VKW  +C+PK +GG+ V++LKL NLSLL KWRW+ L     +W++I++AK
Sbjct: 292 GLSNKNKISWVKWDDVCRPKKDGGLGVRDLKLTNLSLLAKWRWKLLQPEGGYWRDIVIAK 351

Query: 575 YGVCS*GR-----DDFIRYGALSKVFLW*RDICRVGSLGDNEAGWFQESLVRMKGG*WER 739
           YG    GR     D  +R G+      W R+IC    L +N + WF+  + ++ G     
Sbjct: 352 YGKDVVGRHILHDDRSVRSGS-----SWWRNIC----LLENNSDWFELGVEKVLGNGNTT 402

Query: 740 HFLLA*YMGGDTTSL*CFSKVLSISNQE 823
            F    ++G  + ++  F ++ SIS Q+
Sbjct: 403 SFWNDVWVGTQSLAI-AFPRLFSISVQQ 429



 Score = 65.9 bits (159), Expect(3) = 1e-34
 Identities = 37/83 (44%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
 Frame = +1

Query: 160 RVLGLPVGGNQRRATTWAPLLDSLRSRLASWKIGMSVLVAGLSYLFLS--*NIIHIF-LS 330
           + LGLPVG N +  TTW P+LD +R R+ SW  G   L  G   + ++   N+I IF LS
Sbjct: 212 KYLGLPVGANPKLMTTWQPMLDIIRGRVGSW--GNKYLSFGGRIVMVNAVLNVIPIFYLS 269

Query: 331 FMKMHNKVWKSVVRIQRAFSFGG 399
           ++K+  KVW+ VV+IQR F + G
Sbjct: 270 YLKIPGKVWREVVKIQRKFLWSG 292



 Score = 44.3 bits (103), Expect(3) = 1e-34
 Identities = 26/55 (47%), Positives = 38/55 (69%), Gaps = 3/55 (5%)
 Frame = +1

Query: 841 YSIRSAY-SILSADPSRAS--RLLVHQTLLLRSLWKSLAPSKVVAFSWQLTLDRI 996
           ++ +SAY S++    SR    +LL++   + ++LWK+ AP KVVAFSWQL LDRI
Sbjct: 458 FTAKSAYHSLIRLQRSRNGFDQLLLY---VFKNLWKTAAPCKVVAFSWQLLLDRI 509


>gb|PNY09827.1| ribonuclease H [Trifolium pratense]
          Length = 958

 Score =  100 bits (250), Expect(2) = 4e-34
 Identities = 57/143 (39%), Positives = 83/143 (58%)
 Frame = +2

Query: 395 GAKGVRKIT*VKWSKMCKPKSEGGIRVKNLKLFNLSLLGKWRWRFLNCTTNFWKEILLAK 574
           G +G RKI+ VKWS +CK KS+ G+ +++++L NLSLL KWRWR L      WKE+L+AK
Sbjct: 558 GVRGGRKISWVKWSVVCKEKSQDGLGMRDVRLVNLSLLSKWRWRLLQPGLPLWKEVLVAK 617

Query: 575 YGVCS*GRDDFIRYGALSKVFLW*RDICRVGSLGDNEAGWFQESLVRMKGG*WERHFLLA 754
           YG       D+  Y   S    W +DIC + ++  ++  WF  SL R  G     HF L+
Sbjct: 618 YGSHIVQFADWCNYRIPSSASNWWKDICALDTVVASK-NWFAASLERKMGNGRSTHFWLS 676

Query: 755 *YMGGDTTSL*CFSKVLSISNQE 823
            ++G    S+  F ++ SIS Q+
Sbjct: 677 TWIGDVPLSI-AFPRLFSISTQK 698



 Score = 73.9 bits (180), Expect(2) = 4e-34
 Identities = 43/87 (49%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
 Frame = +1

Query: 160 RVLGLPVGGNQRRATTWAPLLDSLRSRLASWKIGMSVLVAGLSYLFLS*NIIHI-FLSFM 336
           + LGLP+G N RR +TW PLLD LR+RL SW+     L   +  +    N I I FLSFM
Sbjct: 478 KYLGLPIGANPRRLSTWDPLLDHLRNRLFSWRNKHISLGGRIILINAVLNAIPIFFLSFM 537

Query: 337 KMHNKVWKSVVRIQRAFSFGG-KGGEE 414
           KM   VW+ +VRIQR F +GG +GG +
Sbjct: 538 KMPVGVWRKMVRIQREFLWGGVRGGRK 564


>dbj|GAU25119.1| hypothetical protein TSUD_274080 [Trifolium subterraneum]
          Length = 937

 Score = 85.1 bits (209), Expect(3) = 3e-33
 Identities = 43/110 (39%), Positives = 64/110 (58%)
 Frame = +2

Query: 395 GAKGVRKIT*VKWSKMCKPKSEGGIRVKNLKLFNLSLLGKWRWRFLNCTTNFWKEILLAK 574
           G KG  KI+ VKW ++CKP+S+GG+ V+++   NLSLL KWRW+ L      WK++L+A+
Sbjct: 538 GVKGGSKISWVKWKEVCKPRSQGGLGVRDVGKVNLSLLIKWRWKLLQKDAAVWKDVLVAR 597

Query: 575 YGVCS*GRDDFIRYGALSKVFLW*RDICRVGSLGDNEAGWFQESLVRMKG 724
           YG  +     +I     S    W RD+CR+      E  WF +++ R  G
Sbjct: 598 YGENARHNVLWIGCPIPSSASCWWRDLCRIDL--TEEGSWFAKNISRRVG 645



 Score = 69.7 bits (169), Expect(3) = 3e-33
 Identities = 43/94 (45%), Positives = 54/94 (57%), Gaps = 11/94 (11%)
 Frame = +1

Query: 166 LGLPVGGNQRRATTWAPLLDSLRSRLASWKIGMSVLVAGLSYLFLS*NIIHI-------- 321
           LGLPVG N RR++TW P+LDSLR RL +W         G  Y+ L   I+ I        
Sbjct: 460 LGLPVGANPRRSSTWEPVLDSLRKRLRAW---------GNKYVSLGGRIVLINSILNSIP 510

Query: 322 --FLSFMKMHNKVWKSVVRIQRAFSFGG-KGGEE 414
             FLSF+K+   V KS+ RIQR F +GG KGG +
Sbjct: 511 IFFLSFLKLPAAVLKSITRIQREFLWGGVKGGSK 544



 Score = 37.4 bits (85), Expect(3) = 3e-33
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +3

Query: 720 KVGDGNATFF*HDTWVGTQPLCNAFPKFF 806
           +VG G+ T F  D WVG  PLC +FP+ F
Sbjct: 643 RVGRGDTTRFWKDCWVGQVPLCESFPRLF 671


>dbj|GAU47735.1| hypothetical protein TSUD_386940 [Trifolium subterraneum]
          Length = 1905

 Score = 84.0 bits (206), Expect(3) = 5e-33
 Identities = 45/143 (31%), Positives = 76/143 (53%)
 Frame = +2

Query: 395  GAKGVRKIT*VKWSKMCKPKSEGGIRVKNLKLFNLSLLGKWRWRFLNCTTNFWKEILLAK 574
            G     +I  VKW+ +CKPK E G+ +++L++ N+SLL KWRW+ L+  +  WK+++ AK
Sbjct: 1579 GLSKKNRICWVKWNDICKPKKEAGLGIRDLRVVNISLLTKWRWKLLSQQSEVWKDVVAAK 1638

Query: 575  YGVCS*GRDDFIRYGALSKVFLW*RDICRVGSLGDNEAGWFQESLVRMKGG*WERHFLLA 754
            YG    G++  +          W +DIC +    D ++ WF E++ +  G      F   
Sbjct: 1639 YGQLIIGKEKLVGPDFPRMASTWWKDICNL----DKDSNWFVEAVEKKVGNGKLTAFWTD 1694

Query: 755  *YMGGDTTSL*CFSKVLSISNQE 823
             ++ GD      F ++  ISNQ+
Sbjct: 1695 IWI-GDQPLQQRFPRIYGISNQK 1716



 Score = 64.3 bits (155), Expect(3) = 5e-33
 Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
 Frame = +1

Query: 166  LGLPVGGNQRRATTWAPLLDSLRSRLASWKIGMSVLVAGLSYLFLS*NIIHIF-LSFMKM 342
            LGLPVG N R+  TW P+L +++ RL +W      L   +  +    + I +F LSF+KM
Sbjct: 1501 LGLPVGANPRKLKTWEPMLKAIKGRLGTWGNKHVSLGGRIVMINAVLSAIPVFYLSFLKM 1560

Query: 343  HNKVWKSVVRIQRAFSFGG 399
              KVWK VV++QR F +GG
Sbjct: 1561 PVKVWKEVVKLQRGFLWGG 1579



 Score = 43.1 bits (100), Expect(3) = 5e-33
 Identities = 21/60 (35%), Positives = 34/60 (56%)
 Frame = +1

Query: 841  YSIRSAYSILSADPSRASRLLVHQTLLLRSLWKSLAPSKVVAFSWQLTLDRILLRENMFR 1020
            +S+++ Y +L    S    +   +  +   +WK  APSKV AFSW+L  DRI  +EN+ +
Sbjct: 1750 FSVKACYVMLQNKFSVRRVMEPFEEFVFSKIWKCGAPSKVCAFSWKLLWDRIQTKENLHK 1809


>dbj|GAU25690.1| hypothetical protein TSUD_266170 [Trifolium subterraneum]
          Length = 496

 Score = 91.3 bits (225), Expect(2) = 2e-32
 Identities = 52/143 (36%), Positives = 82/143 (57%)
 Frame = +2

Query: 395 GAKGVRKIT*VKWSKMCKPKSEGGIRVKNLKLFNLSLLGKWRWRFLNCTTNFWKEILLAK 574
           G +G +K++ VKWS +CK K +GG+ V++++L NLSLL KWRWR L    + WK++L AK
Sbjct: 96  GVRGGKKVSWVKWSVVCKAKKKGGLGVRDVRLVNLSLLAKWRWRLLLPGRSLWKDVLAAK 155

Query: 575 YGVCS*GRDDFIRYGALSKVFLW*RDICRVGSLGDNEAGWFQESLVRMKGG*WERHFLLA 754
           YG     + D+  +   S    W +DIC +  + +++  W  ES+VR K G     F  +
Sbjct: 156 YGNHILHKVDWSEFRIPSFASNWWKDICTLDKVVESK-NWLVESVVR-KVGNGNSTFFWS 213

Query: 755 *YMGGDTTSL*CFSKVLSISNQE 823
               G+   L  F ++ S+SN +
Sbjct: 214 TTWVGEAPLLEVFPRLFSLSNHK 236



 Score = 77.8 bits (190), Expect(2) = 2e-32
 Identities = 44/87 (50%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
 Frame = +1

Query: 160 RVLGLPVGGNQRRATTWAPLLDSLRSRLASWKIGMSVLVAGLSYLFLS*NIIHIF-LSFM 336
           + LGLPVGGN +  +TW P++D LR+RL SWK     L   +  +    N I IF LSFM
Sbjct: 16  KYLGLPVGGNPKSVSTWEPMIDHLRNRLLSWKNKHISLGGRIVMINAVLNAIPIFYLSFM 75

Query: 337 KMHNKVWKSVVRIQRAFSFGG-KGGEE 414
           KM  KVWK V RIQR F +GG +GG++
Sbjct: 76  KMPTKVWKQVRRIQREFLWGGVRGGKK 102


>dbj|GAU43110.1| hypothetical protein TSUD_373050 [Trifolium subterraneum]
          Length = 1099

 Score = 96.7 bits (239), Expect(2) = 4e-32
 Identities = 55/148 (37%), Positives = 82/148 (55%)
 Frame = +2

Query: 395  GAKGVRKIT*VKWSKMCKPKSEGGIRVKNLKLFNLSLLGKWRWRFLNCTTNFWKEILLAK 574
            G KG  KI  VKWS +C+ K++GG+ V+++++ NLSLL KWRWR L      WKEIL+AK
Sbjct: 699  GVKGGNKIKWVKWSVVCRAKNKGGLGVRDVRIVNLSLLAKWRWRLLLPGRPLWKEILVAK 758

Query: 575  YGVCS*GRDDFIRYGALSKVFLW*RDICRVGSLGDNEAGWFQESLVRMKGG*WERHFLLA 754
            YG     R D+  Y   S    W +DIC +  + +++  W  E + R  G      F   
Sbjct: 759  YGEHILHRVDWSDYRIPSSASKWWKDICSIDKVVEDK-NWLVEEVGRKVGNGNSTSFWST 817

Query: 755  *YMGGDTTSL*CFSKVLSISNQEGCSMR 838
             ++G    S+  F ++ S+SN + C +R
Sbjct: 818  KWIGDAPLSV-IFPRLFSLSNHKDCMVR 844



 Score = 71.2 bits (173), Expect(2) = 4e-32
 Identities = 42/87 (48%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
 Frame = +1

Query: 160 RVLGLPVGGNQRRATTWAPLLDSLRSRLASWKIGMSVLVAGLSYLFLS*NIIHIF-LSFM 336
           + LGLPVG N +  +TW PLLD LR RL SW+         +  L    N I IF LS +
Sbjct: 619 KYLGLPVGANPKNGSTWEPLLDHLRKRLNSWRNKHISFGGRIVMLNAVLNAIPIFYLSLL 678

Query: 337 KMHNKVWKSVVRIQRAFSFGG-KGGEE 414
           KM   VWK VVR+QR F +GG KGG +
Sbjct: 679 KMPVNVWKQVVRLQRVFLWGGVKGGNK 705


>dbj|GAU27881.1| hypothetical protein TSUD_159750 [Trifolium subterraneum]
          Length = 1175

 Score = 77.8 bits (190), Expect(3) = 2e-31
 Identities = 37/91 (40%), Positives = 53/91 (58%)
 Frame = +2

Query: 395  GAKGVRKIT*VKWSKMCKPKSEGGIRVKNLKLFNLSLLGKWRWRFLNCTTNFWKEILLAK 574
            GA G  KI+ VKW+ +C+PK EGG+ VK+L++ N+SLL KW+WR L+     WK I+  +
Sbjct: 776  GAAGSSKISWVKWTDVCRPKKEGGLGVKDLRIMNISLLAKWKWRLLSEGEAIWKNIIRER 835

Query: 575  YGVCS*GRDDFIRYGALSKVFLW*RDICRVG 667
            YG    G     +    SK   W  D+  +G
Sbjct: 836  YGGGERGVGWMSKVRVSSKASPWWNDLMTIG 866



 Score = 67.4 bits (163), Expect(3) = 2e-31
 Identities = 39/82 (47%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
 Frame = +1

Query: 166 LGLPVGGNQRRATTWAPLLDSLRSRLASWKIGMSVLVAGLSYLFLS*NIIHIF-LSFMKM 342
           LGLPVG N RRA TW P+++ L+ RLASWK     L   +  L    + I IF LS  KM
Sbjct: 698 LGLPVGANPRRAATWNPVIEVLQKRLASWKNKYVSLGGRVVLLNSVLSAIPIFYLSLFKM 757

Query: 343 HNKVWKSVVRIQRAFSFGGKGG 408
              VWK +V +QR F +GG  G
Sbjct: 758 PAGVWKKIVSLQRRFLWGGAAG 779



 Score = 41.2 bits (95), Expect(3) = 2e-31
 Identities = 19/44 (43%), Positives = 26/44 (59%)
 Frame = +3

Query: 675 GTMRLVGFRSHLYV*KVGDGNATFF*HDTWVGTQPLCNAFPKFF 806
           G +  V   S ++  K+G+G AT F HD+WVG Q L   FP+ F
Sbjct: 866 GVVAGVDHLSGIFFKKIGNGGATSFWHDSWVGPQTLKEVFPRLF 909


>dbj|GAU38652.1| hypothetical protein TSUD_276920 [Trifolium subterraneum]
          Length = 719

 Score = 91.3 bits (225), Expect(2) = 2e-31
 Identities = 48/148 (32%), Positives = 86/148 (58%)
 Frame = +2

Query: 395 GAKGVRKIT*VKWSKMCKPKSEGGIRVKNLKLFNLSLLGKWRWRFLNCTTNFWKEILLAK 574
           G +G +K++ V+WS +CK K +GG+ V++++L N+SLL KWRWR L    + WK++L++ 
Sbjct: 386 GVRGGKKVSWVRWSVVCKEKDKGGLGVRDIRLVNISLLSKWRWRLLLPGRSLWKDVLVSI 445

Query: 575 YGVCS*GRDDFIRYGALSKVFLW*RDICRVGSLGDNEAGWFQESLVRMKGG*WERHFLLA 754
           YG     R D+  +    K   W +DIC + ++ + +  W  ES+ R  G      F   
Sbjct: 446 YGDQILHRVDWSSFSIPYKASNWWKDICSLENVVEAK-NWLAESISRRVGDGSSTSFWAT 504

Query: 755 *YMGGDTTSL*CFSKVLSISNQEGCSMR 838
            ++G    ++  F ++ S+SNQ+G +++
Sbjct: 505 RWIGEAPLAV-VFPRLFSLSNQQGATVK 531



 Score = 74.3 bits (181), Expect(2) = 2e-31
 Identities = 42/85 (49%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
 Frame = +1

Query: 166 LGLPVGGNQRRATTWAPLLDSLRSRLASWKIGMSVLVAGLSYLFLS*NIIHIF-LSFMKM 342
           LGLP+G N R  +TW PL+D LR RL SW+     L   +  +    N I IF LSF+KM
Sbjct: 308 LGLPIGANPRSLSTWEPLVDLLRKRLNSWRNKYISLGGQIVMINAVLNAIPIFYLSFLKM 367

Query: 343 HNKVWKSVVRIQRAFSFGG-KGGEE 414
             KVW+ VVRIQR F +GG +GG++
Sbjct: 368 PKKVWRKVVRIQREFLWGGVRGGKK 392


>gb|PNY06394.1| ribonuclease H [Trifolium pratense]
          Length = 379

 Score = 81.6 bits (200), Expect(3) = 8e-31
 Identities = 42/110 (38%), Positives = 64/110 (58%)
 Frame = +2

Query: 395 GAKGVRKIT*VKWSKMCKPKSEGGIRVKNLKLFNLSLLGKWRWRFLNCTTNFWKEILLAK 574
           G  G +KI+ +KW  +C PK +GG+ V+++++ N+SLL KWR R L+     WKE+L +K
Sbjct: 107 GRSGRKKISWIKWDIVCLPKKKGGLGVRDIRMVNISLLAKWRLRLLHDEQAVWKEVLKSK 166

Query: 575 YGVCS*GRDDFIRYGALSKVFLW*RDICRVGSLGDNEAGWFQESLVRMKG 724
           Y V   G+ +           LW RDIC +GS  +    WF +S+V+  G
Sbjct: 167 YVVGVVGKTELGEEYKPWFASLWWRDICSIGS--NLNHNWFDQSVVKKLG 214



 Score = 59.3 bits (142), Expect(3) = 8e-31
 Identities = 38/86 (44%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
 Frame = +1

Query: 160 RVLGLPVGGNQRRATTWAPLLDSLRSRLASWKIGMSVLVAGLSYLFLS*NIIHIF-LSFM 336
           + LGL VG N     TW PLL  LR RL  W      L   +  L    N I IF LSF+
Sbjct: 27  KYLGLLVGANSGCDATWEPLLVFLRKRLGLWGNKYVSLGGRIILLNFVLNAIPIFYLSFL 86

Query: 337 KMHNKVWKSVVRIQRAFSFGGKGGEE 414
           K+  +VWK V RIQR F +GG+ G +
Sbjct: 87  KIPVQVWKQVRRIQREFLWGGRSGRK 112



 Score = 43.1 bits (100), Expect(3) = 8e-31
 Identities = 17/35 (48%), Positives = 24/35 (68%)
 Frame = +3

Query: 720 KVGDGNATFF*HDTWVGTQPLCNAFPKFFQYLTRR 824
           K+G+G  T F  DTWVG +PLC+ FP+ F   T++
Sbjct: 212 KLGNGMCTSFWKDTWVGDRPLCDRFPRLFSISTKK 246


>gb|PNY12727.1| ribonuclease H [Trifolium pratense]
          Length = 698

 Score = 75.5 bits (184), Expect(3) = 1e-30
 Identities = 37/91 (40%), Positives = 52/91 (57%)
 Frame = +2

Query: 395 GAKGVRKIT*VKWSKMCKPKSEGGIRVKNLKLFNLSLLGKWRWRFLNCTTNFWKEILLAK 574
           GA G  KI+ V W  +C+ K EGG+ VK+L++ N+SLL KW+WR L+   + WK +L  K
Sbjct: 299 GAAGASKISWVNWLDVCRSKKEGGLGVKDLRIMNISLLAKWKWRLLSEDESIWKNVLRDK 358

Query: 575 YGVCS*GRDDFIRYGALSKVFLW*RDICRVG 667
           YG    G     R    +KV  W  D+  +G
Sbjct: 359 YGSGEVGTVWMSRTLPSAKVSPWWNDLMSIG 389



 Score = 65.9 bits (159), Expect(3) = 1e-30
 Identities = 38/83 (45%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
 Frame = +1

Query: 166 LGLPVGGNQRRATTWAPLLDSLRSRLASWKIGMSVLVAGLSYLFLS--*NIIHIFLSFMK 339
           LGLPVG N RR +TW P+++ L+ RLASWK    V + G   L  S    I   +LS  K
Sbjct: 221 LGLPVGANPRRVSTWNPVIEVLQKRLASWK-NKYVSLWGRVVLLNSVLAEIPIFYLSLFK 279

Query: 340 MHNKVWKSVVRIQRAFSFGGKGG 408
           M   VWK ++R+QR F +GG  G
Sbjct: 280 MPVGVWKKIIRLQRRFLWGGAAG 302



 Score = 42.4 bits (98), Expect(3) = 1e-30
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = +3

Query: 720 KVGDGNATFF*HDTWVGTQPLCNAFPKFF 806
           K+G+G  T F HD+W+G QPL   FP+FF
Sbjct: 404 KIGNGGTTSFWHDSWLGPQPLKEVFPRFF 432


>gb|PNX87107.1| ribonuclease H, partial [Trifolium pratense]
          Length = 472

 Score = 87.0 bits (214), Expect(2) = 1e-30
 Identities = 49/147 (33%), Positives = 80/147 (54%)
 Frame = +2

Query: 395 GAKGVRKIT*VKWSKMCKPKSEGGIRVKNLKLFNLSLLGKWRWRFLNCTTNFWKEILLAK 574
           G  GV+KI  VKW  +CKPK  GG+ V+++++ N SLL KWRWR L+   + WK+++  K
Sbjct: 107 GRNGVKKINWVKWDTICKPKHLGGLGVRDIRVVNFSLLAKWRWRLLSEDESMWKKVIKGK 166

Query: 575 YGVCS*GRDDFIRYGALSKVFLW*RDICRVGSLGDNEAGWFQESLVRMKGG*WERHFLLA 754
           YG  S G+ D           +W +DIC +G+  +  + WF +   +  G   +  F   
Sbjct: 167 YGDASCGKVDLGEDCKPWFSSIWWKDICSIGT--NLNSDWFSQQAFKKIGNGMKTSFWTD 224

Query: 755 *YMGGDTTSL*CFSKVLSISNQEGCSM 835
            ++ G+ +    F ++ SIS Q+  S+
Sbjct: 225 KWV-GEFSLREKFPRLFSISLQKNVSV 250



 Score = 75.9 bits (185), Expect(2) = 1e-30
 Identities = 46/85 (54%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
 Frame = +1

Query: 160 RVLGLPVGGNQRRATTWAPLLDSLRSRLASWKIGMSVLVAGLSYLFLS-*NIIHIF-LSF 333
           + LGLPVG N RRA+TW P LDSLR RL  W     V + G   LF S  N I IF LS+
Sbjct: 27  KYLGLPVGANPRRASTWEPFLDSLRKRLGVWG-NRYVSLGGRVVLFNSVLNAIPIFYLSY 85

Query: 334 MKMHNKVWKSVVRIQRAFSFGGKGG 408
           MK+  +VWK V RIQR F +GG+ G
Sbjct: 86  MKIPIQVWKKVKRIQREFLWGGRNG 110


>dbj|GAU29496.1| hypothetical protein TSUD_360410 [Trifolium subterraneum]
          Length = 1301

 Score = 95.9 bits (237), Expect(2) = 2e-30
 Identities = 52/139 (37%), Positives = 81/139 (58%)
 Frame = +2

Query: 401  KGVRKIT*VKWSKMCKPKSEGGIRVKNLKLFNLSLLGKWRWRFLNCTTNFWKEILLAKYG 580
            +G +K++ VKWS +CK K++GG+ V++++L N+SLL KWRWR L      WKE+L+AKYG
Sbjct: 931  RGGKKVSWVKWSVVCKDKAKGGLGVRDIRLVNISLLSKWRWRLLQPGRPLWKEVLVAKYG 990

Query: 581  VCS*GRDDFIRYGALSKVFLW*RDICRVGSLGDNEAGWFQESLVRMKGG*WERHFLLA*Y 760
                 + D+      S   +W RDI  +  +  ++  WF ES+VR  G      F    +
Sbjct: 991  EFILNKVDWSGVRIPSTASMWWRDISSIDKVVSSK-DWFAESIVRKVGNGNSTSFWSTIW 1049

Query: 761  MGGDTTSL*CFSKVLSISN 817
            +G D  S+  F ++ S+SN
Sbjct: 1050 IGDDPLSV-VFPRLFSLSN 1067



 Score = 66.6 bits (161), Expect(2) = 2e-30
 Identities = 41/87 (47%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
 Frame = +1

Query: 160  RVLGLPVGGNQRRATTWAPLLDSLRSRLASWKIGMSVLVAGLSYLFLS*NIIHIF-LSFM 336
            + LGLP+G N +  TTW PLL  LR RL SW+     L   +  +    N I IF LSF+
Sbjct: 849  KYLGLPIGANPKCLTTWDPLLAHLRKRLCSWRNKHISLGGRIVMINAVLNAIPIFHLSFL 908

Query: 337  KMHNKVWKSVVRIQRAFSFG-GKGGEE 414
            KM   VWK VVRIQR F +G  +GG++
Sbjct: 909  KMPVLVWKKVVRIQREFLWGCVRGGKK 935


>dbj|GAU44056.1| hypothetical protein TSUD_399540 [Trifolium subterraneum]
          Length = 609

 Score = 83.6 bits (205), Expect(3) = 1e-29
 Identities = 40/110 (36%), Positives = 62/110 (56%)
 Frame = +2

Query: 395 GAKGVRKIT*VKWSKMCKPKSEGGIRVKNLKLFNLSLLGKWRWRFLNCTTNFWKEILLAK 574
           G K  RK+  V W+K+CK KS GG+ V++L+  NL+L+GKWRWR ++     W++I+ A+
Sbjct: 437 GPKSARKLAWVSWAKVCKLKSGGGLGVRDLRALNLALVGKWRWRLISGGVGLWRDIIFAR 496

Query: 575 YGVCS*GRDDFIRYGALSKVFLW*RDICRVGSLGDNEAGWFQESLVRMKG 724
           YG  S       R   L +   W R++  +G   D  + WF E + +  G
Sbjct: 497 YGPLSPSPHLGGRPQGLRRASGWWRNMSLLGGPVDASSDWFSEGVTKTVG 546



 Score = 67.8 bits (164), Expect(3) = 1e-29
 Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
 Frame = +1

Query: 166 LGLPVGGNQRRATTWAPLLDSLRSRLASWKIGMSVLVAGLSYLFLS*NIIHIF-LSFMKM 342
           LGLP+G + R+  TW PLLDSL  RL  W+     L   +  L    N I IF LSFMK+
Sbjct: 359 LGLPIGASHRKDATWQPLLDSLARRLGVWRNKYVSLGGRVVLLNSVLNSIPIFYLSFMKL 418

Query: 343 HNKVWKSVVRIQRAFSFGG 399
             K+WK +V+IQR F +GG
Sbjct: 419 PIKIWKKIVQIQRNFLWGG 437



 Score = 28.9 bits (63), Expect(3) = 1e-29
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +3

Query: 723 VGDGNATFF*HDTWVGTQPLCNAFPKFFQ 809
           VG+G  T F  D WVG  PL   F + FQ
Sbjct: 545 VGNGLMTSFWFDPWVGETPLRIQFQRLFQ 573


>dbj|GAU28852.1| hypothetical protein TSUD_21890 [Trifolium subterraneum]
          Length = 836

 Score = 92.0 bits (227), Expect(2) = 3e-29
 Identities = 54/145 (37%), Positives = 83/145 (57%), Gaps = 2/145 (1%)
 Frame = +2

Query: 395 GAKGVRKIT*VKWSKMCKPKSEGGIRVKNLKLFNLSLLGKWRWRFLNCTTNFWKEILLAK 574
           G KG RKI+ V W ++C+P+S+GG+ V+++   +LSLL KWRWR L    +FWKE+L+AK
Sbjct: 468 GVKGGRKISWVTWKEVCRPRSQGGLGVRDVGKVSLSLLIKWRWRLLQKDNSFWKELLVAK 527

Query: 575 YGVCS*GRDDFIRYGALSKVFLW*RDICRVGSLGDNEAGWFQESLVRMKGG*WERHFLLA 754
           YG+       +I +   S+  LW +DIC + +    E  WF  ++ R+ G      F L 
Sbjct: 528 YGLHVRYNVHWIGHVLPSRASLWWKDICGIDA--REEGSWFACNMSRVLGNGNSTRFWLD 585

Query: 755 *YMGGDTTSL*C--FSKVLSISNQE 823
            ++G       C  F ++ SIS Q+
Sbjct: 586 CWLGNRPL---CEQFPRLFSISLQQ 607



 Score = 66.2 bits (160), Expect(2) = 3e-29
 Identities = 39/85 (45%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
 Frame = +1

Query: 166 LGLPVGGNQRRATTWAPLLDSLRSRLASWKIGMSVLVAGLSYLFLS*NIIHIF-LSFMKM 342
           LGLPVG N RR +TW PL++ LR RL +W+     L   +  +    N I IF LSF++M
Sbjct: 390 LGLPVGANPRRCSTWDPLIEQLRRRLQNWRHKYVSLGGRIVLINSVLNAIPIFYLSFLRM 449

Query: 343 HNKVWKSVVRIQRAFSFGG-KGGEE 414
              V K ++RIQR F +GG KGG +
Sbjct: 450 PAVVIKKIIRIQREFLWGGVKGGRK 474


>gb|PNX95738.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1375

 Score = 91.3 bits (225), Expect(2) = 4e-29
 Identities = 53/140 (37%), Positives = 76/140 (54%)
 Frame = +2

Query: 395  GAKGVRKIT*VKWSKMCKPKSEGGIRVKNLKLFNLSLLGKWRWRFLNCTTNFWKEILLAK 574
            G +G +KI+ VKW  +C+ K  GG+ VK++ L NLSLL KWRWR L    + WKEIL+ K
Sbjct: 975  GVRGGKKISWVKWKVVCQDKRRGGLGVKDVNLMNLSLLAKWRWRILQSGPSLWKEILITK 1034

Query: 575  YGVCS*GRDDFIRYGALSKVFLW*RDICRVGSLGDNEAGWFQESLVRMKGG*WERHFLLA 754
            YG       D  R    S    W +D+C + S+ +++  W  ES+ R  G      F L 
Sbjct: 1035 YGETIKSCLDLERGRYPSNASRWWKDLCSLDSVVESKK-WLAESISRKVGNGETTSFWLD 1093

Query: 755  *YMGGDTTSL*CFSKVLSIS 814
             ++G  T +   F ++ SIS
Sbjct: 1094 KWVGNSTLAS-LFPRLFSIS 1112



 Score = 66.6 bits (161), Expect(2) = 4e-29
 Identities = 41/87 (47%), Positives = 53/87 (60%), Gaps = 4/87 (4%)
 Frame = +1

Query: 166  LGLPVGGNQRRATTWAPLLDSLRSRLASWK---IGMSVLVAGLSYLFLS*NIIHIFLSFM 336
            LGLP+G N R   TW PLLD LR RL SW    I +   +  L+ +  S  I   F+SF+
Sbjct: 897  LGLPIGANPRSILTWEPLLDRLRKRLKSWGNKFISLGGRIVMLNSVLNSMPI--FFMSFL 954

Query: 337  KMHNKVWKSVVRIQRAFSFGG-KGGEE 414
            KM  KV K VV+IQR F +GG +GG++
Sbjct: 955  KMPKKVCKMVVQIQREFLWGGVRGGKK 981


>gb|PNX84009.1| ribonuclease H [Trifolium pratense]
          Length = 471

 Score = 72.0 bits (175), Expect(3) = 5e-29
 Identities = 35/91 (38%), Positives = 49/91 (53%)
 Frame = +2

Query: 395 GAKGVRKIT*VKWSKMCKPKSEGGIRVKNLKLFNLSLLGKWRWRFLNCTTNFWKEILLAK 574
           GA G  KI  V W  +C+ K EGG+ VK+L++ N+SLL KW+WR L+   + WK +L  K
Sbjct: 279 GAAGASKIPWVNWQDVCRSKKEGGLGVKDLRIMNISLLAKWKWRLLSEGDSIWKNVLRDK 338

Query: 575 YGVCS*GRDDFIRYGALSKVFLW*RDICRVG 667
           YG    G          +K   W  D+  +G
Sbjct: 339 YGGGESGDAWMSTIVPSAKASPWWNDLMNIG 369



 Score = 69.7 bits (169), Expect(3) = 5e-29
 Identities = 39/84 (46%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
 Frame = +1

Query: 166 LGLPVGGNQRRATTWAPLLDSLRSRLASWK---IGMSVLVAGLSYLFLS*NIIHIFLSFM 336
           LGLPVGGN RRA+TW P+L+ L+ RLASWK   +     V  L+ +  +  I   +LS  
Sbjct: 201 LGLPVGGNPRRASTWNPVLEVLQRRLASWKNKYVSHGGRVVLLNSVLAA--IPIFYLSLF 258

Query: 337 KMHNKVWKSVVRIQRAFSFGGKGG 408
           KM   VWK ++R+QR F +GG  G
Sbjct: 259 KMPVGVWKKIIRLQRRFLWGGAAG 282



 Score = 36.2 bits (82), Expect(3) = 5e-29
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +3

Query: 720 KVGDGNATFF*HDTWVGTQPLCNAFPKFF 806
           K+G+G  T F HD+W+G Q L   FP+ F
Sbjct: 384 KIGNGGTTRFWHDSWLGPQSLKEIFPRLF 412


>dbj|GAU34029.1| hypothetical protein TSUD_16170 [Trifolium subterraneum]
          Length = 865

 Score = 89.4 bits (220), Expect(2) = 5e-29
 Identities = 55/148 (37%), Positives = 81/148 (54%)
 Frame = +2

Query: 395 GAKGVRKIT*VKWSKMCKPKSEGGIRVKNLKLFNLSLLGKWRWRFLNCTTNFWKEILLAK 574
           G KG  KI  VKWS +CK K +GG+ V++++L NLSLL KWRWR L   +  WKE+L+AK
Sbjct: 476 GVKGGNKIKWVKWSVVCKAKEKGGLGVRDIRLVNLSLLAKWRWRLLLPGSALWKEVLVAK 535

Query: 575 YGVCS*GRDDFIRYGALSKVFLW*RDICRVGSLGDNEAGWFQESLVRMKGG*WERHFLLA 754
           YG       D+  Y   S    W +DI  +  + +N+  W  ES+ R  G      F  +
Sbjct: 536 YGNHILNMVDWSGYRVPSLASKWWKDINSLDKVVENK-NWIVESVGRKVGDGNSTCFWSS 594

Query: 755 *YMGGDTTSL*CFSKVLSISNQEGCSMR 838
            ++G    S+  F ++ S+SN +   +R
Sbjct: 595 LWIGEAPLSV-VFPRLFSLSNHKTSMVR 621



 Score = 68.2 bits (165), Expect(2) = 5e-29
 Identities = 41/85 (48%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
 Frame = +1

Query: 166 LGLPVGGNQRRATTWAPLLDSLRSRLASWKIGMSVLVAGLSYLFLS*NIIHIF-LSFMKM 342
           LGLP+G N +   TW PLLD LR RL SW+     L   +  +    N I IF LS +KM
Sbjct: 398 LGLPIGTNPKSGPTWEPLLDHLRKRLFSWRNKHISLAGRIVMINAVLNAIPIFYLSLLKM 457

Query: 343 HNKVWKSVVRIQRAFSFGG-KGGEE 414
              VWK VVRIQR F + G KGG +
Sbjct: 458 SVNVWKQVVRIQREFLWRGVKGGNK 482


>dbj|GAU38148.1| hypothetical protein TSUD_395930 [Trifolium subterraneum]
          Length = 503

 Score = 78.2 bits (191), Expect(3) = 8e-29
 Identities = 38/100 (38%), Positives = 56/100 (56%)
 Frame = +2

Query: 425 VKWSKMCKPKSEGGIRVKNLKLFNLSLLGKWRWRFLNCTTNFWKEILLAKYGVCS*GRDD 604
           VKW  +CKPK EGG+ V++L+L N+SLL KWRW+ L      WKE++ A+YG    G+ +
Sbjct: 117 VKWDVICKPKKEGGLGVRDLRLVNISLLAKWRWKLLTTECEVWKEVVGARYGRDVIGKVN 176

Query: 605 FIRYGALSKVFLW*RDICRVGSLGDNEAGWFQESLVRMKG 724
                       W RD+C    L D++  WF  ++ +  G
Sbjct: 177 LGDIDVTRTGSCWWRDLC----LLDSDVRWFSSAVGKRVG 212



 Score = 63.2 bits (152), Expect(3) = 8e-29
 Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
 Frame = +1

Query: 160 RVLGLPVGGNQRRATTWAPLLDSLRSRLASWKIGMSVLVAGLSYLFLS*NIIHIF-LSFM 336
           + LGLPVG N R+ +TW P+L+ ++ RL +W      L   +  +    N I IF LS+M
Sbjct: 27  KYLGLPVGANPRKLSTWEPMLNVIKGRLCAWGNKYVSLGGRIVLINAVMNAIPIFYLSYM 86

Query: 337 KMHNKVWKSVVRIQRAFSFGG 399
           KM  KVW+ +V++QR F + G
Sbjct: 87  KMPLKVWRELVKLQRVFLWAG 107



 Score = 35.8 bits (81), Expect(3) = 8e-29
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +3

Query: 720 KVGDGNATFF*HDTWVGTQPLCNAFPKFFQYLTRR 824
           +VG G++T F ++ W+G QPL   FP+ F   T++
Sbjct: 210 RVGRGDSTMFWNEIWIGDQPLRQRFPRLFGMSTQQ 244