BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus22_contig00027277
         (1092 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP78233.1| Retrovirus-related Pol polyprotein from transposo...   355   e-115
gb|KYP75335.1| Retrovirus-related Pol polyprotein from transposo...   339   e-109
dbj|GAU34785.1| hypothetical protein TSUD_205890 [Trifolium subt...   336   e-104
gb|PNX91972.1| retrovirus-related Pol polyprotein from transposo...   343   e-103
gb|PNX93462.1| histone deacetylase, partial [Trifolium pratense]      343   e-103
dbj|GAU32278.1| hypothetical protein TSUD_62940 [Trifolium subte...   339   e-102
gb|KYP38387.1| Retrovirus-related Pol polyprotein from transposo...   305   3e-95
gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposo...   204   7e-55
gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposo...   204   9e-55
gb|PNY02430.1| retrovirus-related Pol polyprotein from transposo...   204   9e-55
gb|KYP41292.1| Retrovirus-related Pol polyprotein from transposo...   201   1e-53
gb|KYP42260.1| Retrovirus-related Pol polyprotein from transposo...   196   1e-53
gb|KYP55753.1| Retrovirus-related Pol polyprotein from transposo...   184   4e-53
gb|KYP34307.1| Retrovirus-related Pol polyprotein from transposo...   199   4e-53
gb|PNX59503.1| retrovirus-related Pol polyprotein from transposo...   187   9e-53
gb|KYP68418.1| Retrovirus-related Pol polyprotein from transposo...   185   9e-53
gb|PNX92571.1| histone deacetylase [Trifolium pratense]               197   2e-52
gb|KYP70184.1| Retrovirus-related Pol polyprotein from transposo...   183   2e-52
gb|KYP68421.1| Retrovirus-related Pol polyprotein from transposo...   180   5e-52
gb|KYP67039.1| Retrovirus-related Pol polyprotein from transposo...   196   7e-52

>gb|KYP78233.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 540

 Score =  355 bits (910), Expect = e-115
 Identities = 181/362 (50%), Positives = 231/362 (63%)
 Frame = -1

Query: 1092 RKHRHIVDMGLSLLSQASMPLPYWDHAFHTAVYLINRLPSAYHQHAIPYTTLYNKQPEFN 913
            RKHRHIV++GL+LL +A +P+ +WD+AF T+VYLINRLPS+  Q+ +PY  L+N  P+++
Sbjct: 51   RKHRHIVELGLTLLVEADLPMQFWDYAFLTSVYLINRLPSSSIQNEVPYQKLFNNTPDYH 110

Query: 912  LLRVFGCSCFPLLRPYNSHKFEFRSAECLFLGYSPHHKGYKCLDSNGRLFISKDVIFNEN 733
             L+VFGC+CFP LRPYN  K + RS ECLFLGYS  HKGYKCL ++GRL+ISKDVIFNE 
Sbjct: 111  FLKVFGCACFPHLRPYNRTKLQLRSQECLFLGYSTSHKGYKCLAADGRLYISKDVIFNEA 170

Query: 732  IYPYQSLFAAQKPQNPTSTRSLPPLQVANXXXXXXXXXPLYNXXXXXXXXXXXXXXXXXX 553
             +PY++LF +    +  +T  +P L V N            N                  
Sbjct: 171  KFPYKTLFTSSPTHSSQNTIEVP-LTVTNSPPITALPASSSNIHEPHSISSSASSPNIVS 229

Query: 552  XXXXXXXXXXXXXXXXTINLNSEHSSVSSQPTTMXXXXXXXXXXXXXPFIHPNNTHPMVT 373
                                N  + + S  P T+               IHP+NTHPMVT
Sbjct: 230  ESLTPATQS-----------NLPNITSSQSPNTLSDSNPTPPAPASHAIIHPHNTHPMVT 278

Query: 372  RGKDGIVQPRLQPTLLMATAKPNTVAQALNSPHWKAAMQCEYNALLANNTWTLTSLPRGK 193
            R KDGIV+PRLQPTLL+   +P T  QAL++  W AAMQ E+NALL N  W+L  LP  +
Sbjct: 279  RAKDGIVKPRLQPTLLLTHTEPKTTRQALSNSTWFAAMQAEHNALLHNGIWSLVPLPPNR 338

Query: 192  KAIGSKWVFRIKENPDGTINRYKARLVAKGFNQRLGCDYNETFAPVIKPITVRLILTLAL 13
              IG KWVFR+KENPDGT+++YKARLVAKGF+Q+ G DYNETF+ VIKP+TVRLILTLAL
Sbjct: 339  TPIGCKWVFRVKENPDGTVHKYKARLVAKGFHQQFGYDYNETFSLVIKPVTVRLILTLAL 398

Query: 12   TY 7
            T+
Sbjct: 399  TH 400


>gb|KYP75335.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 537

 Score =  339 bits (869), Expect = e-109
 Identities = 178/368 (48%), Positives = 230/368 (62%), Gaps = 6/368 (1%)
 Frame = -1

Query: 1092 RKHRHIVDMGLSLLSQASMPLPYWDHAFHTAVYLINRLPSAYHQHAIPYTTLYNKQPEFN 913
            RKHRHIV++GL++L+QA +P+ +WDHAF T+VYLINRLPS+  QH +P+  L+++ P++N
Sbjct: 201  RKHRHIVELGLTMLAQAHLPMQFWDHAFLTSVYLINRLPSSSIQHDVPFRKLFHQLPDYN 260

Query: 912  LLRVFGCSCFPLLRPYNSHKFEFRSAECLFLGYSPHHKGYKCLDSNGRLFISKDVIFNEN 733
             LR+FGCSCFP LRPYN +K + RS EC+FLGYS  HKGYKCL   GR+FISKDVIF E 
Sbjct: 261  FLRIFGCSCFPHLRPYNKNKLQLRSQECVFLGYSTSHKGYKCLAPTGRIFISKDVIFCET 320

Query: 732  IYPYQSLFAAQKPQNPTSTRSLPPLQVANXXXXXXXXXPLYNXXXXXXXXXXXXXXXXXX 553
             +PY SLF A     PTS+  +P +  +          PL +                  
Sbjct: 321  RFPYPSLFPASATNPPTSSIPVPLVITSLQPPMPTDSPPLIS------------------ 362

Query: 552  XXXXXXXXXXXXXXXXTINLNSEHSSVSSQPTTMXXXXXXXXXXXXXPFIHPNNTHP--- 382
                              +  + +S++SS   T                +  ++T P   
Sbjct: 363  ---------------PNTSPTTSNSTLSSSSATTSSVSASTLLPTSSTSLSTHDTTPITN 407

Query: 381  ---MVTRGKDGIVQPRLQPTLLMATAKPNTVAQALNSPHWKAAMQCEYNALLANNTWTLT 211
               M TR K GIV+P LQPTLL+   +P +  QAL +  W AAM+ EYNALL N TWTL 
Sbjct: 408  IHSMTTRAKAGIVKPCLQPTLLLTHTEPKSTKQALANDTWLAAMKQEYNALLNNGTWTLV 467

Query: 210  SLPRGKKAIGSKWVFRIKENPDGTINRYKARLVAKGFNQRLGCDYNETFAPVIKPITVRL 31
            SLP  K AIG KWVFRIKEN DGT+N+YKARLVAKGF+++ G DYNETF+PV+KP+T+RL
Sbjct: 468  SLPPNKTAIGCKWVFRIKENSDGTVNKYKARLVAKGFHKQFGSDYNETFSPVVKPVTIRL 527

Query: 30   ILTLALTY 7
            ILTLALT+
Sbjct: 528  ILTLALTH 535


>dbj|GAU34785.1| hypothetical protein TSUD_205890 [Trifolium subterraneum]
          Length = 888

 Score =  336 bits (861), Expect = e-104
 Identities = 178/366 (48%), Positives = 222/366 (60%), Gaps = 4/366 (1%)
 Frame = -1

Query: 1092 RKHRHIVDMGLSLLSQASMPLPYWDHAFHTAVYLINRLPSAYHQHAIPYTTLYNKQPEFN 913
            RKHRH+VD+GL+LLSQA++PL YWDH+F TAV+LINRLP+A     IPYTTL++K P+FN
Sbjct: 530  RKHRHVVDLGLTLLSQANLPLTYWDHSFLTAVHLINRLPTASLNFKIPYTTLFHKDPDFN 589

Query: 912  LLRVFGCSCFPLLRPYNSHKFEFRSAECLFLGYSPHHKGYKCLDSNGRLFISKDVIFNEN 733
              +VFG +CFPLLRPYNSHKF+FRS EC+FLGYS  HKGYKCL   GR+++SKDVIFNE 
Sbjct: 590  SFKVFGAACFPLLRPYNSHKFDFRSHECIFLGYSTTHKGYKCLSPTGRIYVSKDVIFNEQ 649

Query: 732  IYPYQSLFAAQKPQNPTSTRSLP----PLQVANXXXXXXXXXPLYNXXXXXXXXXXXXXX 565
             +PY+ LF  Q     T  + +P    P+   N            N              
Sbjct: 650  RFPYKILFPTQTSSLSTPIQDVPLSTLPVGTHNQTEITKVISQTSN-------------- 695

Query: 564  XXXXXXXXXXXXXXXXXXXXTINLNSEHSSVSSQPTTMXXXXXXXXXXXXXPFIHPNNTH 385
                                 +NL      ++ QP ++                HP    
Sbjct: 696  -------------PTSTDPPLLNLPQPAPPIAEQPPSISSKLINN---------HP---- 729

Query: 384  PMVTRGKDGIVQPRLQPTLLMATAKPNTVAQALNSPHWKAAMQCEYNALLANNTWTLTSL 205
             M TR K GI  P+  PTLL+   +P TV QAL  P W +AM  E+ AL  N+TW L  L
Sbjct: 730  -MKTRAKSGISLPKPPPTLLLTHTEPRTVKQALQDPKWLSAMTTEFEALKNNHTWNLVPL 788

Query: 204  PRGKKAIGSKWVFRIKENPDGTINRYKARLVAKGFNQRLGCDYNETFAPVIKPITVRLIL 25
            P+ + AIG KWVFR KENPDGTIN+YKARLVAKGF+Q  G D+NETF+PVIKPIT+RLIL
Sbjct: 789  PQNRTAIGCKWVFRTKENPDGTINKYKARLVAKGFHQIQGFDFNETFSPVIKPITIRLIL 848

Query: 24   TLALTY 7
            +LA++Y
Sbjct: 849  SLAVSY 854


>gb|PNX91972.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1516

 Score =  343 bits (881), Expect = e-103
 Identities = 183/366 (50%), Positives = 227/366 (62%), Gaps = 4/366 (1%)
 Frame = -1

Query: 1092 RKHRHIVDMGLSLLSQASMPLPYWDHAFHTAVYLINRLPSAYHQHAIPYTTLYNKQPEFN 913
            RKHRH+VD+GL+LLSQA++PL YWDHAF TAV+LINRLP+A  Q  IPYT L+NK PEF 
Sbjct: 754  RKHRHVVDLGLTLLSQANLPLKYWDHAFLTAVHLINRLPTASLQFKIPYTILFNKSPEFT 813

Query: 912  LLRVFGCSCFPLLRPYNSHKFEFRSAECLFLGYSPHHKGYKCLDSNGRLFISKDVIFNEN 733
              +VFG +CFPLLRPYN+HKF+ RS EC+FLGYS  HKGYKCL   GR+F+SKDV+FNE+
Sbjct: 814  SFKVFGSACFPLLRPYNAHKFDVRSHECIFLGYSNTHKGYKCLSPTGRIFVSKDVLFNEH 873

Query: 732  IYPYQSLFAAQKPQNPTSTRSLP----PLQVANXXXXXXXXXPLYNXXXXXXXXXXXXXX 565
             +PY+SLF+ Q       T  +P    P+ + N         P+                
Sbjct: 874  RFPYKSLFSTQDSALSDITLDVPISTLPISIQNQTITTNTSSPITQPSNTTMLSPPNPTL 933

Query: 564  XXXXXXXXXXXXXXXXXXXXTINLNSEHSSVSSQPTTMXXXXXXXXXXXXXPFIHPNNTH 385
                                  N  + H+  S+  TT              P + P N H
Sbjct: 934  TQPTDS----------------NTKTPHNPSSTSITTHSDSPTQSSPSPTIPSL-PTNNH 976

Query: 384  PMVTRGKDGIVQPRLQPTLLMATAKPNTVAQALNSPHWKAAMQCEYNALLANNTWTLTSL 205
             M TR K GI+ PR+ P LL+   +P TV QAL  P W  AM  E+ AL  N+TWTL  L
Sbjct: 977  RMQTRAKSGII-PRINPKLLLTHTEPRTVKQALQDPKWLTAMTEEFEALKRNHTWTLVPL 1035

Query: 204  PRGKKAIGSKWVFRIKENPDGTINRYKARLVAKGFNQRLGCDYNETFAPVIKPITVRLIL 25
            P+ + AIG KWVFR KENPDGTIN+YKARLVAKGF+Q  G D+NETF+PVIKPIT+RLIL
Sbjct: 1036 PKHRSAIGCKWVFRTKENPDGTINKYKARLVAKGFHQIQGFDFNETFSPVIKPITIRLIL 1095

Query: 24   TLALTY 7
            +LA++Y
Sbjct: 1096 SLAVSY 1101


>gb|PNX93462.1| histone deacetylase, partial [Trifolium pratense]
          Length = 1489

 Score =  343 bits (880), Expect = e-103
 Identities = 177/364 (48%), Positives = 224/364 (61%), Gaps = 2/364 (0%)
 Frame = -1

Query: 1092 RKHRHIVDMGLSLLSQASMPLPYWDHAFHTAVYLINRLPSAYHQHAIPYTTLYNKQPEFN 913
            RKHRH+VD+GL+LLSQA++P+ YWDHAF TAV+LINRLP+A     IPYT L+NK P+++
Sbjct: 735  RKHRHVVDLGLTLLSQANLPITYWDHAFLTAVHLINRLPTAALSFKIPYTVLFNKIPDYH 794

Query: 912  LLRVFGCSCFPLLRPYNSHKFEFRSAECLFLGYSPHHKGYKCLDSNGRLFISKDVIFNEN 733
             L+VFGC+CFPLLRPYNSHK +FRS EC+F+GYS  HKGYKCL  +G++FISKDV+FNE 
Sbjct: 795  SLKVFGCACFPLLRPYNSHKLDFRSHECIFMGYSNTHKGYKCLSPSGKIFISKDVLFNEY 854

Query: 732  IYPYQSLFAAQKPQN--PTSTRSLPPLQVANXXXXXXXXXPLYNXXXXXXXXXXXXXXXX 559
             +PYQ LF +       P+    +P   +            L N                
Sbjct: 855  RFPYQFLFPSPMKNTILPSPVPDIPISTLPIGNHNHSQLATLNNTVQCQESSATALSQPP 914

Query: 558  XXXXXXXXXXXXXXXXXXTINLNSEHSSVSSQPTTMXXXXXXXXXXXXXPFIHPNNTHPM 379
                               I  N+     S+ P                      NTH M
Sbjct: 915  YVSTIPENSPNSNNSNTTQITTNASDIQKSTPPN------------------KSTNTHTM 956

Query: 378  VTRGKDGIVQPRLQPTLLMATAKPNTVAQALNSPHWKAAMQCEYNALLANNTWTLTSLPR 199
             TR K GIV P+  PTLL+   +P TV QAL+ P W  AM+ E++AL  N TWTL SLP 
Sbjct: 957  QTRSKSGIVLPKQNPTLLLTHTEPKTVKQALSIPQWYNAMKDEFDALQRNQTWTLVSLPP 1016

Query: 198  GKKAIGSKWVFRIKENPDGTINRYKARLVAKGFNQRLGCDYNETFAPVIKPITVRLILTL 19
             + AIG KWVFR KENPDG+IN+YKARLVAKGF+Q+ G D+NETF+PVIKP+T+RLIL+L
Sbjct: 1017 NRSAIGCKWVFRTKENPDGSINKYKARLVAKGFHQKPGFDFNETFSPVIKPVTIRLILSL 1076

Query: 18   ALTY 7
            A++Y
Sbjct: 1077 AISY 1080


>dbj|GAU32278.1| hypothetical protein TSUD_62940 [Trifolium subterraneum]
          Length = 1409

 Score =  339 bits (869), Expect = e-102
 Identities = 179/369 (48%), Positives = 224/369 (60%), Gaps = 7/369 (1%)
 Frame = -1

Query: 1092 RKHRHIVDMGLSLLSQASMPLPYWDHAFHTAVYLINRLPSAYHQHAIPYTTLYNKQPEFN 913
            RKHRH+VD+GL+LLSQA++PL YWDHAF TAV+LINRLP+A     +PYTTL+ K P++N
Sbjct: 680  RKHRHVVDLGLTLLSQANLPLTYWDHAFLTAVHLINRLPTASLNFKVPYTTLFQKDPDYN 739

Query: 912  LLRVFGCSCFPLLRPYNSHKFEFRSAECLFLGYSPHHKGYKCLDSNGRLFISKDVIFNEN 733
             L+VFG +CFPL+RPYNSHKF+FRS EC+FLGYS  HKGYKCL   GR+++SKDV+FNE+
Sbjct: 740  SLKVFGSACFPLIRPYNSHKFDFRSHECIFLGYSTTHKGYKCLSPTGRIYVSKDVMFNES 799

Query: 732  IYPYQSLFAAQKP--QNPTSTRSLPPLQVANXXXXXXXXXPLYNXXXXXXXXXXXXXXXX 559
             +PY+SLF        NPT    L  L +              N                
Sbjct: 800  RFPYESLFPTPNSALSNPTPDIPLTTLPIGT-----------QNENILTNIQNPTDQSSN 848

Query: 558  XXXXXXXXXXXXXXXXXXTINLNSEHSSVSSQPTTMXXXXXXXXXXXXXPFIHP-----N 394
                              T   +S  S+ +S P T+                HP      
Sbjct: 849  TNQPSTSPPTTLQPTQPDTELPHSTSSNPNSDPLTLSPS------------FHPMPSKTT 896

Query: 393  NTHPMVTRGKDGIVQPRLQPTLLMATAKPNTVAQALNSPHWKAAMQCEYNALLANNTWTL 214
            NTHPM TR K G++ P++ P LL+   +P T  QAL    W +AM  E+ AL  N TWTL
Sbjct: 897  NTHPMQTRVKSGLILPKINPKLLLTHTEPRTTKQALQDRKWLSAMTEEFEALKRNKTWTL 956

Query: 213  TSLPRGKKAIGSKWVFRIKENPDGTINRYKARLVAKGFNQRLGCDYNETFAPVIKPITVR 34
              LP  +  IG KWVFR KENPDGTIN+YKARLVAKGF+Q  G D+NETF+PVIKPIT+R
Sbjct: 957  VPLPNNRDVIGCKWVFRTKENPDGTINKYKARLVAKGFHQVQGFDFNETFSPVIKPITIR 1016

Query: 33   LILTLALTY 7
            LIL+LA++Y
Sbjct: 1017 LILSLAVSY 1025


>gb|KYP38387.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 600

 Score =  305 bits (780), Expect = 3e-95
 Identities = 157/339 (46%), Positives = 206/339 (60%)
 Frame = -1

Query: 1092 RKHRHIVDMGLSLLSQASMPLPYWDHAFHTAVYLINRLPSAYHQHAIPYTTLYNKQPEFN 913
            R+H H+V++GL++L  AS+PL +WDH F TA YLINRLPS+   H  PY  +++K+P++ 
Sbjct: 292  RRHIHVVELGLAMLHHASLPLKFWDHGFLTATYLINRLPSSSIGHQSPYHLIHHKEPDYQ 351

Query: 912  LLRVFGCSCFPLLRPYNSHKFEFRSAECLFLGYSPHHKGYKCLDSNGRLFISKDVIFNEN 733
             L++FGCSCFPLLRPYN HK + RS ECLFLGYSP HKGYKCL  +GR++ISKDV+FNE+
Sbjct: 352  FLKIFGCSCFPLLRPYNQHKIQPRSEECLFLGYSPTHKGYKCLSKSGRIYISKDVVFNES 411

Query: 732  IYPYQSLFAAQKPQNPTSTRSLPPLQVANXXXXXXXXXPLYNXXXXXXXXXXXXXXXXXX 553
             +PYQ LF ++      S  S P   V+N          +++                  
Sbjct: 412  RFPYQDLFVSK------SVSSTPATSVSN------IPSLIHSPSQFNSPESSTHSDPDFL 459

Query: 552  XXXXXXXXXXXXXXXXTINLNSEHSSVSSQPTTMXXXXXXXXXXXXXPFIHPNNTHPMVT 373
                            + N+++   S+S     +               +HP     M T
Sbjct: 460  HSQPAPADSQLSSFNSSPNISAASGSISETARPLN--------------LHP-----MTT 500

Query: 372  RGKDGIVQPRLQPTLLMATAKPNTVAQALNSPHWKAAMQCEYNALLANNTWTLTSLPRGK 193
            R K+GIVQPRL PTLL++   P TV  AL  PHW AAMQ E  AL  N+TWTLT+LP G+
Sbjct: 501  RSKNGIVQPRLNPTLLLSHVVPKTVKTALADPHWLAAMQTEITALHNNHTWTLTTLPPGR 560

Query: 192  KAIGSKWVFRIKENPDGTINRYKARLVAKGFNQRLGCDY 76
            K IG KWVFR+KENPDG+IN+YKARLVAKGF+Q+ G D+
Sbjct: 561  KPIGCKWVFRVKENPDGSINKYKARLVAKGFHQQPGLDF 599


>gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1073

 Score =  204 bits (519), Expect = 7e-55
 Identities = 97/161 (60%), Positives = 121/161 (75%)
 Frame = -1

Query: 489 SEHSSVSSQPTTMXXXXXXXXXXXXXPFIHPNNTHPMVTRGKDGIVQPRLQPTLLMATAK 310
           S +++  + P+T+             P IHP+N HPM TR KDGIV+PRLQPTLL+   +
Sbjct: 501 SPNTAAHTSPSTLSIPTSSNLEPSSSPIIHPHNVHPMTTRAKDGIVKPRLQPTLLLTQVE 560

Query: 309 PNTVAQALNSPHWKAAMQCEYNALLANNTWTLTSLPRGKKAIGSKWVFRIKENPDGTINR 130
           P T  QAL++P W AAMQ EYNALL NNTW+L  LP  + AIG KWVFR+KENP+G++ +
Sbjct: 561 PKTTKQALSNPTWSAAMQTEYNALLHNNTWSLVPLPPHRTAIGCKWVFRVKENPNGSVQK 620

Query: 129 YKARLVAKGFNQRLGCDYNETFAPVIKPITVRLILTLALTY 7
           YKARLVAKGFNQ+ G DY+ETF+PVIKP+TVRLILTLALT+
Sbjct: 621 YKARLVAKGFNQQFGFDYHETFSPVIKPVTVRLILTLALTH 661



 Score =  195 bits (496), Expect = 9e-52
 Identities = 85/143 (59%), Positives = 115/143 (80%)
 Frame = -1

Query: 1092 RKHRHIVDMGLSLLSQASMPLPYWDHAFHTAVYLINRLPSAYHQHAIPYTTLYNKQPEFN 913
            RKHRHIV++GL+L++QA +P+ +WDH+F TAVYLINRLPS+  Q+A+PY  L+++ P++ 
Sbjct: 326  RKHRHIVELGLTLMAQAELPMQFWDHSFLTAVYLINRLPSSSIQNAVPYHKLFHQPPDYL 385

Query: 912  LLRVFGCSCFPLLRPYNSHKFEFRSAECLFLGYSPHHKGYKCLDSNGRLFISKDVIFNEN 733
             LR+FGCSCFP LRPYN HK +FRS EC+FLGYS  HKGYKCL ++GRL+ISKDV+FNE 
Sbjct: 386  SLRIFGCSCFPHLRPYNKHKLQFRSQECVFLGYSTSHKGYKCLAADGRLYISKDVVFNET 445

Query: 732  IYPYQSLFAAQKPQNPTSTRSLP 664
             +PY+ LF++ K  +     S+P
Sbjct: 446  KFPYKDLFSSSKASDSQLPISVP 468


>gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1408

 Score =  204 bits (519), Expect = 9e-55
 Identities = 97/161 (60%), Positives = 121/161 (75%)
 Frame = -1

Query: 489  SEHSSVSSQPTTMXXXXXXXXXXXXXPFIHPNNTHPMVTRGKDGIVQPRLQPTLLMATAK 310
            S +++  + P+T+             P IHP+N HPM TR KDGIV+PRLQPTLL+   +
Sbjct: 836  SPNTAAHTSPSTLSIPTSSNLEPSSSPIIHPHNVHPMTTRAKDGIVKPRLQPTLLLTQVE 895

Query: 309  PNTVAQALNSPHWKAAMQCEYNALLANNTWTLTSLPRGKKAIGSKWVFRIKENPDGTINR 130
            P T  QAL++P W AAMQ EYNALL NNTW+L  LP  + AIG KWVFR+KENP+G++ +
Sbjct: 896  PKTTKQALSNPTWSAAMQTEYNALLHNNTWSLVPLPPHRTAIGCKWVFRVKENPNGSVQK 955

Query: 129  YKARLVAKGFNQRLGCDYNETFAPVIKPITVRLILTLALTY 7
            YKARLVAKGFNQ+ G DY+ETF+PVIKP+TVRLILTLALT+
Sbjct: 956  YKARLVAKGFNQQFGFDYHETFSPVIKPVTVRLILTLALTH 996



 Score =  195 bits (496), Expect = 1e-51
 Identities = 85/143 (59%), Positives = 115/143 (80%)
 Frame = -1

Query: 1092 RKHRHIVDMGLSLLSQASMPLPYWDHAFHTAVYLINRLPSAYHQHAIPYTTLYNKQPEFN 913
            RKHRHIV++GL+L++QA +P+ +WDH+F TAVYLINRLPS+  Q+A+PY  L+++ P++ 
Sbjct: 661  RKHRHIVELGLTLMAQAELPMQFWDHSFLTAVYLINRLPSSSIQNAVPYHKLFHQPPDYL 720

Query: 912  LLRVFGCSCFPLLRPYNSHKFEFRSAECLFLGYSPHHKGYKCLDSNGRLFISKDVIFNEN 733
             LR+FGCSCFP LRPYN HK +FRS EC+FLGYS  HKGYKCL ++GRL+ISKDV+FNE 
Sbjct: 721  SLRIFGCSCFPHLRPYNKHKLQFRSQECVFLGYSTSHKGYKCLAADGRLYISKDVVFNET 780

Query: 732  IYPYQSLFAAQKPQNPTSTRSLP 664
             +PY+ LF++ K  +     S+P
Sbjct: 781  KFPYKDLFSSSKASDSQLPISVP 803


>gb|PNY02430.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 1064

 Score =  204 bits (518), Expect = 9e-55
 Identities = 96/147 (65%), Positives = 117/147 (79%), Gaps = 2/147 (1%)
 Frame = -1

Query: 1092 RKHRHIVDMGLSLLSQASMPLPYWDHAFHTAVYLINRLPSAYHQHAIPYTTLYNKQPEFN 913
            RKHRHIVD+GL+LLSQAS+PL YWD+AF TAVYLINRLPSA     IPYT L+++ P++ 
Sbjct: 719  RKHRHIVDLGLTLLSQASLPLSYWDYAFLTAVYLINRLPSAPLDFKIPYTLLFHQDPDYK 778

Query: 912  LLRVFGCSCFPLLRPYNSHKFEFRSAECLFLGYSPHHKGYKCLDSNGRLFISKDVIFNEN 733
             L+VFGC+CFPLLRPYN+HK ++RS ECLFLGYSP HKGY+CL  NGRLFISKDVIFNE+
Sbjct: 779  FLKVFGCACFPLLRPYNTHKLDYRSHECLFLGYSPSHKGYRCLSPNGRLFISKDVIFNES 838

Query: 732  IYPYQSLFAAQKPQNP--TSTRSLPPL 658
             +P+  LF +     P  +S  +L PL
Sbjct: 839  RFPFIDLFTSPHSVVPSKSSAVTLSPL 865



 Score =  188 bits (477), Expect = 3e-49
 Identities = 85/130 (65%), Positives = 105/130 (80%)
 Frame = -1

Query: 399  PNNTHPMVTRGKDGIVQPRLQPTLLMATAKPNTVAQALNSPHWKAAMQCEYNALLANNTW 220
            P+N HPM+TR KDG  QPRL+P LL+   +P +V QAL  P WK AMQ EY+ALLANNTW
Sbjct: 928  PSNLHPMLTRAKDGFTQPRLEPRLLLTHIEPASVKQALQVPEWKTAMQAEYDALLANNTW 987

Query: 219  TLTSLPRGKKAIGSKWVFRIKENPDGTINRYKARLVAKGFNQRLGCDYNETFAPVIKPIT 40
            TL  LP  + +IG KWVFR+K+N DGT+N+YKARLVAKGF+QR G D+ ETF+PV+KP+T
Sbjct: 988  TLVPLPSDRSSIGCKWVFRVKQNSDGTLNKYKARLVAKGFHQRHGIDFTETFSPVVKPVT 1047

Query: 39   VRLILTLALT 10
            +RLILTLA+T
Sbjct: 1048 IRLILTLAIT 1057


>gb|KYP41292.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1483

 Score =  201 bits (511), Expect = 1e-53
 Identities = 100/167 (59%), Positives = 120/167 (71%), Gaps = 3/167 (1%)
 Frame = -1

Query: 498 NLNSEHS---SVSSQPTTMXXXXXXXXXXXXXPFIHPNNTHPMVTRGKDGIVQPRLQPTL 328
           N++SE S   +  + P  +             PFIHP+N HPM TR KDGIV+ RLQPTL
Sbjct: 470 NMSSESSQAVTTGTSPPNLSVPTSPVPESDTLPFIHPSNVHPMTTRAKDGIVKHRLQPTL 529

Query: 327 LMATAKPNTVAQALNSPHWKAAMQCEYNALLANNTWTLTSLPRGKKAIGSKWVFRIKENP 148
           L+  A+P TV QAL++  W A MQ EYNALL+N TW+L  LP  + AIG KWVFR+KENP
Sbjct: 530 LLTHAEPKTVKQALSNSTWSAVMQTEYNALLSNGTWSLVHLPPHRTAIGCKWVFRVKENP 589

Query: 147 DGTINRYKARLVAKGFNQRLGCDYNETFAPVIKPITVRLILTLALTY 7
           DGT+ +YKARLVAKGFNQ+ G DYNETF PVIKP+ VRLILTLALT+
Sbjct: 590 DGTVQKYKARLVAKGFNQQFGFDYNETFTPVIKPVIVRLILTLALTH 636


>gb|KYP42260.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 623

 Score =  196 bits (498), Expect = 1e-53
 Identities = 86/139 (61%), Positives = 107/139 (76%)
 Frame = -1

Query: 1092 RKHRHIVDMGLSLLSQASMPLPYWDHAFHTAVYLINRLPSAYHQHAIPYTTLYNKQPEFN 913
            RKHRHI++MGL+LLSQA +P+ YWDH FHT VYLINRLPS  H   +PY  LY+K  ++ 
Sbjct: 265  RKHRHIIEMGLTLLSQAFLPMKYWDHVFHTTVYLINRLPSLSHNKIVPYQVLYSKDLDYT 324

Query: 912  LLRVFGCSCFPLLRPYNSHKFEFRSAECLFLGYSPHHKGYKCLDSNGRLFISKDVIFNEN 733
             ++VFGC+C+PLL PYN++K  FRS EC+FLGYS  HKGYKCLD+NG LFISKDVIFNE 
Sbjct: 325  FIKVFGCACYPLLTPYNTNKLHFRSTECVFLGYSSSHKGYKCLDTNGLLFISKDVIFNEQ 384

Query: 732  IYPYQSLFAAQKPQNPTST 676
             +PYQ L  +    + +ST
Sbjct: 385  RFPYQHLIPSTTSVSNSST 403



 Score =  177 bits (449), Expect = 1e-46
 Identities = 81/130 (62%), Positives = 101/130 (77%)
 Frame = -1

Query: 396 NNTHPMVTRGKDGIVQPRLQPTLLMATAKPNTVAQALNSPHWKAAMQCEYNALLANNTWT 217
           +N HPM TR K GIV+P+L PTLL+ T +P ++ QAL+SP WK  M  EY+AL+ N TW 
Sbjct: 440 SNVHPMQTRSKSGIVRPKLHPTLLLTTTEPTSLKQALSSPSWKTVMSLEYDALIKNQTWK 499

Query: 216 LTSLPRGKKAIGSKWVFRIKENPDGTINRYKARLVAKGFNQRLGCDYNETFAPVIKPITV 37
           L  LP  +  IG KWV+ IKEN DGTIN+YKARLVAKGF+Q+ G DY+ETF+PVIKPIT+
Sbjct: 500 LVPLPSNRTLIGCKWVYCIKENHDGTINKYKARLVAKGFHQKFGSDYSETFSPVIKPITI 559

Query: 36  RLILTLALTY 7
           R+ILTL +TY
Sbjct: 560 RVILTLVVTY 569


>gb|KYP55753.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 218

 Score =  184 bits (467), Expect = 4e-53
 Identities = 87/125 (69%), Positives = 101/125 (80%)
 Frame = -1

Query: 381 MVTRGKDGIVQPRLQPTLLMATAKPNTVAQALNSPHWKAAMQCEYNALLANNTWTLTSLP 202
           M TR KDGIV+PRLQPTLL+   +P T  QAL++  W AAMQ EYNALL N TW+L  LP
Sbjct: 1   MTTRAKDGIVKPRLQPTLLLTHVEPKTFKQALSNSTWSAAMQIEYNALLRNGTWSLVRLP 60

Query: 201 RGKKAIGSKWVFRIKENPDGTINRYKARLVAKGFNQRLGCDYNETFAPVIKPITVRLILT 22
             + AIG KWVFR+KENPDGT+ +YKA LVAKGFNQ+ G DYNETFAPVIKP+T+RLILT
Sbjct: 61  PSRTAIGCKWVFRVKENPDGTVQKYKAHLVAKGFNQQFGFDYNETFAPVIKPVTLRLILT 120

Query: 21  LALTY 7
           LALT+
Sbjct: 121 LALTH 125


>gb|KYP34307.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1102

 Score =  199 bits (506), Expect = 4e-53
 Identities = 95/151 (62%), Positives = 114/151 (75%)
 Frame = -1

Query: 468  SQPTTMXXXXXXXXXXXXXPFIHPNNTHPMVTRGKDGIVQPRLQPTLLMATAKPNTVAQA 289
            + P+T+             P IHP+N HPM TR KDGIV+PRLQPTLL+   +P T  QA
Sbjct: 783  TSPSTLSIPTSSNLEPSSSPVIHPHNVHPMTTRAKDGIVKPRLQPTLLLTQVEPKTTKQA 842

Query: 288  LNSPHWKAAMQCEYNALLANNTWTLTSLPRGKKAIGSKWVFRIKENPDGTINRYKARLVA 109
            L++P W AAMQ EYNALL NNTW+L  LP  + AIG KWVFR+KENP+GT+ +YKARLVA
Sbjct: 843  LSNPTWSAAMQTEYNALLHNNTWSLVPLPPHRTAIGCKWVFRVKENPNGTVQKYKARLVA 902

Query: 108  KGFNQRLGCDYNETFAPVIKPITVRLILTLA 16
            KGFNQ+ G DY+ETF+PVIKP+TVRLILTLA
Sbjct: 903  KGFNQQFGFDYHETFSPVIKPVTVRLILTLA 933


>gb|PNX59503.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 340

 Score =  187 bits (475), Expect = 9e-53
 Identities = 85/132 (64%), Positives = 104/132 (78%)
 Frame = -1

Query: 405 IHPNNTHPMVTRGKDGIVQPRLQPTLLMATAKPNTVAQALNSPHWKAAMQCEYNALLANN 226
           IHP N+H M TRGK GIVQPRL PTLL+   +P    QA+  P W  AM+CEY+ALL NN
Sbjct: 109 IHPQNSHSMTTRGKLGIVQPRLNPTLLLTHVEPTGYKQAMQHPQWLQAMKCEYDALLTNN 168

Query: 225 TWTLTSLPRGKKAIGSKWVFRIKENPDGTINRYKARLVAKGFNQRLGCDYNETFAPVIKP 46
           TW+L +LP  +  IG KWVFR+K+NPDGTIN+YKARLVAKGF+Q+ G DY ETF+PV+KP
Sbjct: 169 TWSLVTLPEDRHPIGCKWVFRLKQNPDGTINKYKARLVAKGFHQKHGFDYTETFSPVVKP 228

Query: 45  ITVRLILTLALT 10
           +TVR +LTLA+T
Sbjct: 229 VTVRTVLTLAVT 240


>gb|KYP68418.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 269

 Score =  185 bits (469), Expect = 9e-53
 Identities = 87/125 (69%), Positives = 104/125 (83%)
 Frame = -1

Query: 381 MVTRGKDGIVQPRLQPTLLMATAKPNTVAQALNSPHWKAAMQCEYNALLANNTWTLTSLP 202
           M TR KDGIV+PRLQPTLL+   +P T  QAL++P W AAMQ EYNALL N+TW+L  LP
Sbjct: 1   MTTRAKDGIVKPRLQPTLLLTHVEPKTTKQALSNPTWSAAMQTEYNALLHNDTWSLVPLP 60

Query: 201 RGKKAIGSKWVFRIKENPDGTINRYKARLVAKGFNQRLGCDYNETFAPVIKPITVRLILT 22
             + AIG KWVFR+KENP+GT+ +YKARLVAKGFNQ+ G DY+ETF+PVIKP+TVRLILT
Sbjct: 61  PHRTAIGCKWVFRVKENPNGTVQKYKARLVAKGFNQQFGFDYHETFSPVIKPVTVRLILT 120

Query: 21  LALTY 7
           LALT+
Sbjct: 121 LALTH 125


>gb|PNX92571.1| histone deacetylase [Trifolium pratense]
          Length = 1488

 Score =  197 bits (502), Expect = 2e-52
 Identities = 88/148 (59%), Positives = 116/148 (78%), Gaps = 3/148 (2%)
 Frame = -1

Query: 1092 RKHRHIVDMGLSLLSQASMPLPYWDHAFHTAVYLINRLPSAYHQHAIPYTTLYNKQPEFN 913
            RKHRHIVD+GL+LLSQA++P+ +WD+AF TAVYLINRLPS+      PY  L+ + P+++
Sbjct: 727  RKHRHIVDLGLTLLSQATLPITFWDYAFPTAVYLINRLPSSSINFQTPYFLLFKQHPDYH 786

Query: 912  LLRVFGCSCFPLLRPYNSHKFEFRSAECLFLGYSPHHKGYKCLDSNGRLFISKDVIFNEN 733
             L+VFGC+CFPLLRPY++HK EFRS ECLFLGYSP HKGY+CL  +GRL++SKDV+FNE+
Sbjct: 787  FLKVFGCACFPLLRPYHNHKLEFRSQECLFLGYSPSHKGYRCLSPSGRLYVSKDVLFNES 846

Query: 732  IYPYQSLF---AAQKPQNPTSTRSLPPL 658
             +PY+ LF   +      P+ +  LPPL
Sbjct: 847  RFPYKELFPISSGSSHSPPSKSFKLPPL 874



 Score =  171 bits (433), Expect = 2e-43
 Identities = 84/134 (62%), Positives = 103/134 (76%)
 Frame = -1

Query: 405  IHPNNTHPMVTRGKDGIVQPRLQPTLLMATAKPNTVAQALNSPHWKAAMQCEYNALLANN 226
            I P N H M TR K G  QP+L    L+A ++P +V QAL  P W AAMQ EY+ALL NN
Sbjct: 949  IIPVNAHNMQTRAKSGFKQPKL----LVAHSEPKSVKQALLDPSWHAAMQTEYDALLNNN 1004

Query: 225  TWTLTSLPRGKKAIGSKWVFRIKENPDGTINRYKARLVAKGFNQRLGCDYNETFAPVIKP 46
            TWTL  LP  ++AIG KWVFRIKENPDGT+N+YKARLVAKGF+QR G D+ ETF+PV+KP
Sbjct: 1005 TWTLVPLPPDRQAIGCKWVFRIKENPDGTVNKYKARLVAKGFHQRQGFDFLETFSPVVKP 1064

Query: 45   ITVRLILTLALTYG 4
            +T+R+ILT+A+T G
Sbjct: 1065 VTIRVILTIAITKG 1078


>gb|KYP70184.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 243

 Score =  183 bits (465), Expect = 2e-52
 Identities = 79/128 (61%), Positives = 102/128 (79%)
 Frame = -1

Query: 1092 RKHRHIVDMGLSLLSQASMPLPYWDHAFHTAVYLINRLPSAYHQHAIPYTTLYNKQPEFN 913
            RKHRHIVD+G++LL  AS+PL +WD+AF TAVYLINRLP+A     IP+T L+ + P++ 
Sbjct: 4    RKHRHIVDIGITLLHHASLPLTFWDYAFSTAVYLINRLPTASLNFDIPFTVLFKQAPDYK 63

Query: 912  LLRVFGCSCFPLLRPYNSHKFEFRSAECLFLGYSPHHKGYKCLDSNGRLFISKDVIFNEN 733
             L+ FGC+CFP LRPY +HK +FRS EC+FLGYS  HKGYKCL ++G+++ISKDVIFNE 
Sbjct: 64   FLKTFGCACFPFLRPYTTHKLDFRSQECVFLGYSNSHKGYKCLSASGKIYISKDVIFNET 123

Query: 732  IYPYQSLF 709
             +PY  LF
Sbjct: 124  RFPYLDLF 131


>gb|KYP68421.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 190

 Score =  180 bits (457), Expect = 5e-52
 Identities = 86/125 (68%), Positives = 102/125 (81%)
 Frame = -1

Query: 381 MVTRGKDGIVQPRLQPTLLMATAKPNTVAQALNSPHWKAAMQCEYNALLANNTWTLTSLP 202
           M  R KDGIV+PRLQPTLL+   +P T+ QAL++P W AAMQ EYNAL+ NNTW+L  LP
Sbjct: 1   MTIRAKDGIVKPRLQPTLLLTHVEPKTIKQALSNPTWSAAMQTEYNALVHNNTWSLVPLP 60

Query: 201 RGKKAIGSKWVFRIKENPDGTINRYKARLVAKGFNQRLGCDYNETFAPVIKPITVRLILT 22
             +  IG KWVFR+KENP+GTI +YKARLVAKGFNQ+ G D +ETF+PVIKPITVRLILT
Sbjct: 61  PHRTTIGCKWVFRVKENPNGTIQKYKARLVAKGFNQQFGFDCHETFSPVIKPITVRLILT 120

Query: 21  LALTY 7
           LALT+
Sbjct: 121 LALTH 125


>gb|KYP67039.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1279

 Score =  196 bits (497), Expect = 7e-52
 Identities = 91/149 (61%), Positives = 112/149 (75%)
 Frame = -1

Query: 1092 RKHRHIVDMGLSLLSQASMPLPYWDHAFHTAVYLINRLPSAYHQHAIPYTTLYNKQPEFN 913
            RKHRHIV++GL+LL  AS+PL +WD AF TAVYLINRLPSA     +P+TTL+NK P++ 
Sbjct: 524  RKHRHIVEIGLTLLHHASLPLKFWDFAFTTAVYLINRLPSAALNFNVPFTTLFNKSPDYK 583

Query: 912  LLRVFGCSCFPLLRPYNSHKFEFRSAECLFLGYSPHHKGYKCLDSNGRLFISKDVIFNEN 733
             LR FGC+CFP LRPY SHK  FRS EC+FLGYS  HKGYKCL S+GR++ISKDVIFNE+
Sbjct: 584  FLRTFGCACFPFLRPYASHKLNFRSQECVFLGYSNSHKGYKCLSSSGRIYISKDVIFNEH 643

Query: 732  IYPYQSLFAAQKPQNPTSTRSLPPLQVAN 646
             +PY  LF       P+ T+++ P Q  N
Sbjct: 644  RFPYTDLF------QPSLTQNVSPCQYFN 666



 Score =  170 bits (431), Expect = 4e-43
 Identities = 80/128 (62%), Positives = 101/128 (78%)
 Frame = -1

Query: 393  NTHPMVTRGKDGIVQPRLQPTLLMATAKPNTVAQALNSPHWKAAMQCEYNALLANNTWTL 214
            N HPM TR K G   PR+ P+L +A ++P TV QAL  P+W +AMQ EYNAL+ N+TW L
Sbjct: 737  NNHPMQTRSKSGFHNPRIHPSLFLAHSEPKTVKQALADPNWFSAMQQEYNALMLNHTWDL 796

Query: 213  TSLPRGKKAIGSKWVFRIKENPDGTINRYKARLVAKGFNQRLGCDYNETFAPVIKPITVR 34
             SLP  +KA+G KWVFR+KEN DG+I++ KARLVAKGF+Q  G D++ETF+PVIKPIT+R
Sbjct: 797  VSLPSDRKAVGCKWVFRVKENADGSIDKLKARLVAKGFHQVHGFDFHETFSPVIKPITIR 856

Query: 33   LILTLALT 10
            +ILTLALT
Sbjct: 857  IILTLALT 864