BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus22_contig00025625
         (1026 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX81608.1| ribonuclease H [Trifolium pratense]                    258   3e-77
dbj|GAU51253.1| hypothetical protein TSUD_412460, partial [Trifo...   251   5e-75
dbj|GAU19541.1| hypothetical protein TSUD_303540 [Trifolium subt...   251   2e-74
dbj|GAU50328.1| hypothetical protein TSUD_290640 [Trifolium subt...   237   1e-70
gb|PNX94788.1| ribonuclease H [Trifolium pratense]                    235   1e-69
gb|PNY15498.1| ribonuclease H [Trifolium pratense]                    224   9e-67
dbj|GAU43930.1| hypothetical protein TSUD_28720 [Trifolium subte...   223   7e-66
dbj|GAU31120.1| hypothetical protein TSUD_212270 [Trifolium subt...   218   5e-65
gb|PNY06537.1| ribonuclease H, partial [Trifolium pratense]           233   5e-65
dbj|GAU43243.1| hypothetical protein TSUD_241340 [Trifolium subt...   217   2e-64
gb|PNX72990.1| ribonuclease H, partial [Trifolium pratense]           223   2e-62
gb|PNY12420.1| ribonuclease H [Trifolium pratense]                    219   3e-62
dbj|GAU25543.1| hypothetical protein TSUD_259770 [Trifolium subt...   216   2e-61
gb|PNY10278.1| ribonuclease H [Trifolium pratense]                    209   3e-61
gb|PNX79929.1| ribonuclease H, partial [Trifolium pratense]           216   9e-61
gb|PNY12120.1| 3-ketoacyl-CoA synthase, partial [Trifolium prate...   214   1e-60
gb|PNY03121.1| ribonuclease H, partial [Trifolium pratense]           217   1e-60
gb|PNY06182.1| ribonuclease H [Trifolium pratense]                    215   2e-60
gb|PNY01766.1| ribonuclease H [Trifolium pratense]                    201   6e-59
dbj|GAU13938.1| hypothetical protein TSUD_262650 [Trifolium subt...   210   8e-58

>gb|PNX81608.1| ribonuclease H [Trifolium pratense]
          Length = 630

 Score =  258 bits (659), Expect = 3e-77
 Identities = 118/276 (42%), Positives = 172/276 (62%), Gaps = 4/276 (1%)
 Frame = -3

Query: 1021 PSTMEGDDICLWPGSSDGKFTIASAYNLLNNFTGMPVTDIWKRVWSIAAKERVRQFVWLL 842
            PS+   +D+  W G+++G+F+IASAY LL  F        W ++W +   ER+R F+W++
Sbjct: 259  PSSDSNEDMMAWSGTANGEFSIASAYTLLCRFNDDAWEADWLQIWRLRVPERIRTFIWII 318

Query: 841  CHGRLLTNVRKARMNLGTPYCHHCRTIEESTLRVLHDCPLALTVWLNIVHPKLRTKFLES 662
             H RLLTN RK++M++  P+C+HC  + E TL VL DCPLA +VW N+++ K +  F  +
Sbjct: 319  RHDRLLTNYRKSKMHISEPWCNHCVDVVEDTLHVLRDCPLAKSVWCNLLNGKDKDWFFTA 378

Query: 661  DLHDWISDNM----GTDTQLEWAAIWANACHLIWMWRNKIIHNEDFVMPWKPWSLPINET 494
             L +WI  NM    G D  L WA++WA +CH +W+WRN+  H +  + P +PW L +   
Sbjct: 379  ALDEWIILNMKKQLGRDNNLSWASVWATSCHFLWLWRNRETHGDSRLRPLQPWKLILKWV 438

Query: 493  KDYHLLEKDQINKKIKTKVTKMIGWVPPIEGWLKLNSDGASNKECGIAGCGGLVRDQNGA 314
              Y   +   I    + KV   + W  P +GWL LN+DGAS      AGCGGL+R+  G 
Sbjct: 439  MQYFEADVSGIVIANRQKVEITVTWQCPEDGWLSLNTDGASRGHTS-AGCGGLLRNSEGQ 497

Query: 313  WMCGYSRSLGFCNAYVSELWGVYEGIILAMTKGYKK 206
            W+ G+SR+LG CNAY++ELWGV++G+ LA  KG KK
Sbjct: 498  WLGGFSRNLGRCNAYIAELWGVHDGLCLARDKGAKK 533


>dbj|GAU51253.1| hypothetical protein TSUD_412460, partial [Trifolium subterraneum]
          Length = 609

 Score =  251 bits (642), Expect = 5e-75
 Identities = 110/271 (40%), Positives = 163/271 (60%), Gaps = 4/271 (1%)
 Frame = -3

Query: 1006 GDDICLWPGSSDGKFTIASAYNLLNNFTGMPVTDIWKRVWSIAAKERVRQFVWLLCHGRL 827
            G D  LWPG   G F++A+AY  L           W ++W +   ER+R F+W + H R+
Sbjct: 252  GPDTPLWPGERMGNFSVATAYQYLTGVHLREYEKKWFKIWRLETTERIRVFMWQVLHDRI 311

Query: 826  LTNVRKARMNLGTPYCHHCRTIEESTLRVLHDCPLALTVWLNIVHPKLRTKFLESDLHDW 647
            LTN R A+ NL  PYC +C  +EE+TL VL DCPLA+ VW +++  + R +F    LH W
Sbjct: 312  LTNWRTAKWNLTDPYCSYCEHMEETTLHVLRDCPLAVEVWQHLLEEEHRGRFFIGQLHQW 371

Query: 646  ISDNMGTDT----QLEWAAIWANACHLIWMWRNKIIHNEDFVMPWKPWSLPINETKDYHL 479
            I  N+ T       L+W A+W   C  +W WRNK +H  +    WKPWS  +N   +Y  
Sbjct: 372  IDLNLSTSIGIRRDLDWDAVWVTTCFWLWKWRNKRVHEPNHTSQWKPWSFILNLVNEYKY 431

Query: 478  LEKDQINKKIKTKVTKMIGWVPPIEGWLKLNSDGASNKECGIAGCGGLVRDQNGAWMCGY 299
             ++ +  +K   K  K I W+ P +GW+ LN+DGA+  + GIAGCGG++R+ NG W+CG+
Sbjct: 432  TKQARETEKPCQKELKDIKWIYPAKGWVCLNTDGAAKSDTGIAGCGGILRNDNGIWICGF 491

Query: 298  SRSLGFCNAYVSELWGVYEGIILAMTKGYKK 206
            S+ LG  +AY++E+WG+YEG+ +A   G ++
Sbjct: 492  SKFLGNTSAYMAEVWGLYEGLSMARNLGIER 522


>dbj|GAU19541.1| hypothetical protein TSUD_303540 [Trifolium subterraneum]
          Length = 642

 Score =  251 bits (640), Expect = 2e-74
 Identities = 120/277 (43%), Positives = 161/277 (58%), Gaps = 4/277 (1%)
 Frame = -3

Query: 1024 PPSTMEGDDICLWPGSSDGKFTIASAYNLLNNFTGMPVTDIWKRVWSIAAKERVRQFVWL 845
            PP+     D   W GSSDG FTIASAY LL  F        W  +W +   ERVR FVWL
Sbjct: 274  PPNNNSEADRRAWSGSSDGSFTIASAYTLLCRFNDEAWDTRWLHIWRLKVPERVRSFVWL 333

Query: 844  LCHGRLLTNVRKARMNLGTPYCHHCRTIEESTLRVLHDCPLALTVWLNIVHPKLRTKFLE 665
            + H RLLTN RK++M L  P+C+HC  I E T+ VL DCPLA  VW N+++   R  F  
Sbjct: 334  VRHDRLLTNYRKSKMQLCEPWCNHCIDIVEDTMHVLRDCPLAKVVWSNLLNDTARYSFYH 393

Query: 664  SDLHDWISDN----MGTDTQLEWAAIWANACHLIWMWRNKIIHNEDFVMPWKPWSLPINE 497
            ++L DWI  N    +G +T + W+ +WA  CH++W+WRN+  H +  V P + W   +  
Sbjct: 394  TNLEDWICMNLHKELGKETNVRWSCVWAVGCHVLWLWRNRECHGDMRVRPTQLWQTILYM 453

Query: 496  TKDYHLLEKDQINKKIKTKVTKMIGWVPPIEGWLKLNSDGASNKECGIAGCGGLVRDQNG 317
             + Y   +   I   +  KV   IGW  P   W+KLN+DGAS        CGGL+R+ NG
Sbjct: 454  VQQYKQADIKSIALPVHQKVEVPIGWNKPAGDWIKLNTDGASRPR-----CGGLLRNSNG 508

Query: 316  AWMCGYSRSLGFCNAYVSELWGVYEGIILAMTKGYKK 206
             W+ G+SR LG CNAY++ELWGV +G+     +G+KK
Sbjct: 509  QWLGGFSRHLGRCNAYLAELWGVLDGLNFTYERGHKK 545


>dbj|GAU50328.1| hypothetical protein TSUD_290640 [Trifolium subterraneum]
          Length = 474

 Score =  237 bits (604), Expect = 1e-70
 Identities = 112/277 (40%), Positives = 164/277 (59%), Gaps = 4/277 (1%)
 Frame = -3

Query: 1024 PPSTMEGDDICLWPGSSDGKFTIASAYNLLNNFTGMPVTDIWKRVWSIAAKERVRQFVWL 845
            PP      D  +  G+ +G+F+IASAY L+ NF+       W R+W +   ER+  F+WL
Sbjct: 157  PPQNDGDTDRRVCSGTDNGQFSIASAYKLVCNFSDNSREMEWLRIWKLKVPERITSFIWL 216

Query: 844  LCHGRLLTNVRKARMNLGTPYCHHCRTIEESTLRVLHDCPLALTVWLNIVHPKLRTKFLE 665
            + H RLLTN RK++M++G P+C HC  I E TL VL DCPLA +VW N+++   R     
Sbjct: 217  VRHDRLLTNYRKSKMHIGEPWCTHCVDIVEDTLHVLRDCPLAKSVWCNLLNNAARENSFA 276

Query: 664  SDLHDWISDN----MGTDTQLEWAAIWANACHLIWMWRNKIIHNEDFVMPWKPWSLPINE 497
            ++L DWI  N    +G +  +EW  +WA +CH +W WRN+  H+E  + P  PW   ++ 
Sbjct: 277  AELKDWIHMNLQQDLGRNMHMEWYGVWATSCHSLWTWRNRETHDETRLRPIHPWRYILDC 336

Query: 496  TKDYHLLEKDQINKKIKTKVTKMIGWVPPIEGWLKLNSDGASNKECGIAGCGGLVRDQNG 317
               Y     + I    + ++   I W  P  GW+ LN+DGAS  +   AGCGGL+R+ +G
Sbjct: 337  HLQYMAANVNNIALSTRQQMEVDIAWQQPEAGWVVLNTDGASKMDVA-AGCGGLLRNSHG 395

Query: 316  AWMCGYSRSLGFCNAYVSELWGVYEGIILAMTKGYKK 206
             W+ G+SR LG C+AY++ELWGV +G+ LA  +G  K
Sbjct: 396  QWIGGFSRHLGICSAYLAELWGVLDGLRLARERGITK 432


>gb|PNX94788.1| ribonuclease H [Trifolium pratense]
          Length = 509

 Score =  235 bits (599), Expect = 1e-69
 Identities = 108/280 (38%), Positives = 173/280 (61%), Gaps = 7/280 (2%)
 Frame = -3

Query: 1024 PPSTMEGDDICLWPGSSDGKFTIASAYNLLNNFTGMPVTDIWKRVWSIAAKERVRQFVWL 845
            PP   +G+D  LWPG++ G+FT+++AY LL           W ++W I + ER++ F+W 
Sbjct: 135  PPHESQGEDGQLWPGTNTGQFTVSAAYQLLTEAAEENDEKKWTQIWKIDSTERIKVFIWQ 194

Query: 844  LCHGRLLTNVRKARMNLGTPYCHHCRTIEESTLRVLHDCPLALTVWLNIVHPKLRTKFLE 665
            L H RL+T  R AR  +G  YC  C   EEST+ V+ DCP A+ +W +++  + R  F  
Sbjct: 195  LAHDRLMTKARLARWQIGNSYCDSCTQFEESTIHVVRDCPRAVHLWRHLISNQERGYFFV 254

Query: 664  SDLHDWISDNM----GTDTQLEWAAIWANACHLIWMWRNKIIHNEDFVMPWKPWSLPINE 497
             +  +WI  N+    G +   +W AIWA  C+L+W+WRNK IH+++FV+P +PW + ++ 
Sbjct: 255  IEFDEWIHLNLNNKFGQNYGNDWKAIWATTCYLLWLWRNKSIHDDEFVIPERPWQVVMDY 314

Query: 496  TKDY--HLLEKDQI-NKKIKTKVTKMIGWVPPIEGWLKLNSDGASNKECGIAGCGGLVRD 326
               Y   +L ++Q+ + +++ +V   I W+ P  GW  LNSDGA+      AGCGG++R+
Sbjct: 315  VAAYKHSMLTEEQVGHGRVQQQVD--ITWLAPPPGWFALNSDGAAKLSESKAGCGGVLRN 372

Query: 325  QNGAWMCGYSRSLGFCNAYVSELWGVYEGIILAMTKGYKK 206
            +NG W+ G++++LG   AY++ELWG+YEG+ LA  +   K
Sbjct: 373  ENGNWIEGFTKALGDTTAYMAELWGIYEGLRLAQRRDVMK 412


>gb|PNY15498.1| ribonuclease H [Trifolium pratense]
          Length = 378

 Score =  224 bits (570), Expect = 9e-67
 Identities = 109/275 (39%), Positives = 165/275 (60%), Gaps = 8/275 (2%)
 Frame = -3

Query: 1006 GDDICLWPGSSDGKFTIASAYNLLNNFTGMPVTD--IWKRVWSIAAKERVRQFVWLLCHG 833
            G D CLWPG+S G ++ +SAY +++      +T   IW  +  +   ERVR FVWL+ +G
Sbjct: 10   GRDQCLWPGNSRGDYSASSAYFMMSMEDNTEITQQRIWSHILKLEVNERVRCFVWLMSYG 69

Query: 832  RLLTNVRKARMNLGTPYCHHCRTIEESTLRVLHDCPLALTVWLNIVHPKLRTKFLESDLH 653
            RLLTN  K +M+LG PYC  C    E+   V+ DCP+A  VW++IV  KLR  F  +   
Sbjct: 70   RLLTNHYKHKMHLGYPYCRRCSLQVETISHVMRDCPIARVVWMHIVPHKLRRNFFNTGKD 129

Query: 652  DWISDNM----GTDTQLEWAAIWANACHLIWMWRNKIIHNEDFVMPWKPWSLPINETKDY 485
             WI+ N+      +  ++W A+WA ACH +W+WRNK  H+ +   P + W       KDY
Sbjct: 130  VWIAQNVLYNWENNDGIKWNALWAIACHYLWLWRNKETHDSNVSRPPEAWVWIRKIAKDY 189

Query: 484  HLLE--KDQINKKIKTKVTKMIGWVPPIEGWLKLNSDGASNKECGIAGCGGLVRDQNGAW 311
             +     +++ K ++T++   + W PP  GW+K+N+DGAS K  G A CGGL+R  +  W
Sbjct: 190  KIATAMAEELQKGVRTQI--QVKWQPPSIGWVKVNTDGAS-KSDGSASCGGLIRGSDCEW 246

Query: 310  MCGYSRSLGFCNAYVSELWGVYEGIILAMTKGYKK 206
            + G+S+ +G C + V+ELWGV EG+ LA  +G+++
Sbjct: 247  LGGFSKHIGRCTSVVAELWGVSEGLKLARDRGFQR 281


>dbj|GAU43930.1| hypothetical protein TSUD_28720 [Trifolium subterraneum]
          Length = 432

 Score =  223 bits (568), Expect = 7e-66
 Identities = 114/279 (40%), Positives = 160/279 (57%), Gaps = 7/279 (2%)
 Frame = -3

Query: 1024 PPSTMEGDDICLWPGSSDGKFTIASAYNLLNNFTGMPVTDIWKRVWSIAAKERVRQFVWL 845
            PP+   G D  +  G+    F++A+ Y++L N     +   W ++W +   ERVR  VWL
Sbjct: 134  PPNDAYGKDEFIVAGADASNFSVAAMYSILCNHDSSLMDAAWIKIWKLGVPERVRTLVWL 193

Query: 844  LCHGRLLTNVRKARMNLGTPYCHHCRTIEESTLRVLHDCPLALTVWLNIVHPKLRTKFLE 665
            L H RLLTN  K RM LGT  C  CR I E+ L V  DCP A+ VWLN+V  + R KF  
Sbjct: 194  LTHDRLLTNYNKHRMGLGTALCSFCRDI-ETALHVFRDCPKAMQVWLNVVLQEARQKFFH 252

Query: 664  SDLHDWISDNM----GTDTQLEWAAIWANACHLIWMWRNKIIHNEDFVMPWKP---WSLP 506
             DL  WI+ N+      +  + W+  WA  CH +W WRN+ +H++DF  P +P    S  
Sbjct: 253  EDLSGWINYNLDYCWSGNNGVRWSNFWAMGCHRLWQWRNQEVHSDDFQWPQRPVQHISSA 312

Query: 505  INETKDYHLLEKDQINKKIKTKVTKMIGWVPPIEGWLKLNSDGASNKECGIAGCGGLVRD 326
            I E     +   D +N   K    ++IGW PP  G +KLN+DGA  K+   AGCGG++R+
Sbjct: 313  IYEYSQAKMAGSDIVN---KVHGVRLIGWKPPDIGVVKLNTDGAC-KDDRTAGCGGIIRN 368

Query: 325  QNGAWMCGYSRSLGFCNAYVSELWGVYEGIILAMTKGYK 209
             +G W+ G+++SLG CN+YV+ELW V EG+  A   GY+
Sbjct: 369  SDGRWIDGFAKSLGKCNSYVAELWEVLEGLKYARRLGYQ 407


>dbj|GAU31120.1| hypothetical protein TSUD_212270 [Trifolium subterraneum]
          Length = 347

 Score =  218 bits (556), Expect = 5e-65
 Identities = 106/274 (38%), Positives = 152/274 (55%), Gaps = 4/274 (1%)
 Frame = -3

Query: 1024 PPSTMEGDDICLWPGSSDGKFTIASAYNLLNNFTGMPVTDIWKRVWSIAAKERVRQFVWL 845
            PP   + DD  +WPG   G+FTIASAYNLL  +  + V D+W  +W +   ERVR F+W 
Sbjct: 10   PPQNTDEDDERIWPGDRLGRFTIASAYNLLCGYCELAVDDMWNNIWKMEVPERVRYFIWR 69

Query: 844  LCHGRLLTNVRKARMNLGTPYCHHCRTIEESTLRVLHDCPLALTVWLNIVHPKLRTKFLE 665
            L +GRL TN        G PYC HC  +EES + VL DCPLA  VW +++  + R  F  
Sbjct: 70   LRYGRLPTNKACHPWGHGAPYCGHCVGVEESIIHVLRDCPLAHDVWNHLLPMQTRLGFFT 129

Query: 664  SDLHDWISDNMGTDTQL----EWAAIWANACHLIWMWRNKIIHNEDFVMPWKPWSLPINE 497
               H W   NM    +L    EW  +WA  C+ +W+WRNK   + +FV P     +  + 
Sbjct: 130  CHYHSWFQHNMLNYEKLEGGNEWRVVWAVTCYHLWLWRNKETFDYEFVRPRYASQVIHHY 189

Query: 496  TKDYHLLEKDQINKKIKTKVTKMIGWVPPIEGWLKLNSDGASNKECGIAGCGGLVRDQNG 317
             ++Y   +        K ++   + W  P  GW+ LN+DGA   + G+AGCGG++RD  G
Sbjct: 190  VENYISAKSSSSFIMDKARININVRWEAPRNGWISLNTDGA--VQHGVAGCGGVLRDYQG 247

Query: 316  AWMCGYSRSLGFCNAYVSELWGVYEGIILAMTKG 215
             W+ G+S+ +G  + + +ELWGVY G+ LA  +G
Sbjct: 248  NWITGFSKFIGTASVFNAELWGVYAGLCLARQRG 281


>gb|PNY06537.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1770

 Score =  233 bits (594), Expect = 5e-65
 Identities = 111/262 (42%), Positives = 150/262 (57%), Gaps = 4/262 (1%)
 Frame = -3

Query: 1024 PPSTMEGDDICLWPGSSDGKFTIASAYNLLNNFTGMPVTDIWKRVWSIAAKERVRQFVWL 845
            PP   + DDI  WP    G FT+ASAYN+L +         W  VW I A ERVR FVWL
Sbjct: 1509 PPEDAQDDDINYWPAGKHGNFTVASAYNILADINCQHNNTTWNIVWKIQACERVRAFVWL 1568

Query: 844  LCHGRLLTNVRKARMNLGTPYCHHCRTIEESTLRVLHDCPLALTVWLNIVHPKLRTKFLE 665
            L HGR+LT+ R ++MNLG P+C  C    E+ L VL DC  ++ VWLNIVH   R  F  
Sbjct: 1569 LKHGRMLTHYRMSKMNLGLPFCTFCEDEIETELHVLRDCSKSMQVWLNIVHDSSREVFFN 1628

Query: 664  SDLHDWISDNMGTDTQ----LEWAAIWANACHLIWMWRNKIIHNEDFVMPWKPWSLPINE 497
            +D   WI+ N+  D Q      W + WA ACH +W WRNK  H++ F  P++P  +    
Sbjct: 1629 ADFQQWINMNLHGDIQGVDVNNWQSYWAIACHALWTWRNKEKHDDSFNRPYRPHLVIKQY 1688

Query: 496  TKDYHLLEKDQINKKIKTKVTKMIGWVPPIEGWLKLNSDGASNKECGIAGCGGLVRDQNG 317
              +Y    +   N  +  +V + IGW PP EGW+ +N+DGA  KE   +GCGG+VR  + 
Sbjct: 1689 MTEYEKSSQVDHNVVVLPRVMRQIGWCPPSEGWIIINTDGA-KKENHYSGCGGIVRGNSA 1747

Query: 316  AWMCGYSRSLGFCNAYVSELWG 251
             W  G+++ LG C+  ++ELWG
Sbjct: 1748 EWCGGFAKGLGACSVEMAELWG 1769


>dbj|GAU43243.1| hypothetical protein TSUD_241340 [Trifolium subterraneum]
          Length = 371

 Score =  217 bits (553), Expect = 2e-64
 Identities = 105/267 (39%), Positives = 151/267 (56%), Gaps = 4/267 (1%)
 Frame = -3

Query: 1024 PPSTMEGDDICLWPGSSDGKFTIASAYNLLNNFTGMPVTDIWKRVWSIAAKERVRQFVWL 845
            PPS   G+D       ++G  +++S Y  L NF      + WK +W +   ERVR F+WL
Sbjct: 99   PPSDDGGNDCRRLNMKANGGISVSSMYKHLCNFDVNDDVNDWKDIWRLKVPERVRTFIWL 158

Query: 844  LCHGRLLTNVRKARMNLGTPYCHHCRTIEESTLRVLHDCPLALTVWLNIVHPKLRTKFLE 665
            + H RLLTN +K +M LG+  C +C +I E TL  L DCP  + +WLN+V+   R  F  
Sbjct: 159  MRHNRLLTNEKKHKMGLGSAMCDYCGSIIEDTLHALRDCPQTMPIWLNLVNEHARANFFN 218

Query: 664  SDLHDWISDN----MGTDTQLEWAAIWANACHLIWMWRNKIIHNEDFVMPWKPWSLPINE 497
             DL  WI+ N    MG    +EW  +W  ACH +W WRNK  H E F  P       +N+
Sbjct: 219  GDLFYWINYNMSNYMGKYNGVEWKIMWVVACHQLWFWRNKEKHEESFSRPSNAVLHVMNQ 278

Query: 496  TKDYHLLEKDQINKKIKTKVTKMIGWVPPIEGWLKLNSDGASNKECGIAGCGGLVRDQNG 317
             K Y   + + +     T+   M+GW  P  GW+KLN+DG+  K+ G +GCGG++R   G
Sbjct: 279  VKYYQDADCENVIVVSPTREVVMVGWKYPPSGWVKLNTDGSCRKD-GRSGCGGVIRGSEG 337

Query: 316  AWMCGYSRSLGFCNAYVSELWGVYEGI 236
             W+ G+++ +G  N YV+ELWGV+EG+
Sbjct: 338  EWIGGFAKFVGRSNVYVAELWGVFEGL 364


>gb|PNX72990.1| ribonuclease H, partial [Trifolium pratense]
          Length = 892

 Score =  223 bits (569), Expect = 2e-62
 Identities = 100/265 (37%), Positives = 154/265 (58%), Gaps = 6/265 (2%)
 Frame = -3

Query: 1024 PPSTMEGDDICLWPGSSDGKFTIASAYNLLNNFTGMPVTDIWKRVWSIAAKERVRQFVWL 845
            PPS   G D+ +  G+   +F++A  Y LL N+    + D+WK +W++   ER + F+W+
Sbjct: 631  PPSPANGKDLQVVAGAGTDEFSVAVMYKLLCNYAEDDMEDVWKHLWALHVTERTKYFMWI 690

Query: 844  LCHGRLLTNVRKARMNLGTPYCHHCRTIEESTLRVLHDCPLALTVWLNIVHPKLRTKFLE 665
              H RLLTN  KARM L    C HCR  EE+++ VL DC LA  +W+ +V  + R  F  
Sbjct: 691  ALHDRLLTNAIKARMGLAHGMCDHCREFEETSIHVLRDCTLAKNIWMMVVPQQARGSFFG 750

Query: 664  SDLHDWISDNMGTD----TQLEWAAIWANACHLIWMWRNKIIHNEDFVMPWKPWSLPINE 497
             D+  W   N+  D      ++W   WANAC+ +W W NK  H ++F+ P  P  + +  
Sbjct: 751  GDIAHWFHINLIGDLVKVADIKWTEFWANACYCLWTWHNKEKHEDNFLRPINPVMVVLQR 810

Query: 496  TKDYHLLEKDQINKKI--KTKVTKMIGWVPPIEGWLKLNSDGASNKECGIAGCGGLVRDQ 323
             ++Y+      +N+ +  K +    IGW PP+EGW+K+N+DGA  K    AGCGG++RD 
Sbjct: 811  CREYN--SAAIVNRVVIEKPRSIAWIGWKPPVEGWIKINTDGAC-KGMATAGCGGIIRDS 867

Query: 322  NGAWMCGYSRSLGFCNAYVSELWGV 248
             G W+ G+++ +G C+A+ +ELWGV
Sbjct: 868  KGVWLGGFAKHIGICSAFTAELWGV 892


>gb|PNY12420.1| ribonuclease H [Trifolium pratense]
          Length = 1341

 Score =  219 bits (559), Expect(2) = 3e-62
 Identities = 108/268 (40%), Positives = 155/268 (57%), Gaps = 5/268 (1%)
 Frame = -3

Query: 1024 PPSTMEGDDICLWPGSSDGKFTIASAYNLLNNFTGMPVTDIWKRVWSIAAKERVRQFVWL 845
            PP    G D  L  G S   F+++S YN L +F G      W  +W +   ERVR FVWL
Sbjct: 969  PPMEEYGCDERLGVGGSKYSFSVSSMYNNLCDFHGNESDSTWNMIWKLQVPERVRAFVWL 1028

Query: 844  LCHGRLLTNVRKARMNLGTPYCHHCRTIEESTLRVLHDCPLALTVWLNIVHPKLRTKFLE 665
            L H RLLTN  K+ M LG   C++C  + E+ + V+ DCP A+ +W+ +V    R  FL 
Sbjct: 1029 LMHDRLLTNSTKSSMGLGHAMCNYCGDVVETAIHVMRDCPKAMQIWVTVVPANDRGSFLM 1088

Query: 664  SDLHDWISDNMGT----DTQLEWAAIWANACHLIWMWRNKIIHNEDFVMPWKPWSLPINE 497
             ++ +W+  N+      D + +W   WA ACH +W WRNK IH+EDFV P +P    +  
Sbjct: 1089 GNVKNWVCFNLQNSVTWDRRGQWREYWAQACHCLWFWRNKDIHDEDFVRPTRPVQQVMKL 1148

Query: 496  TKDY-HLLEKDQINKKIKTKVTKMIGWVPPIEGWLKLNSDGASNKECGIAGCGGLVRDQN 320
              DY H    + +  + +T+  + IGW PP   ++KLN+DGA  KE   AGCGG++R   
Sbjct: 1149 LGDYMHAFNNNNVVLE-RTRSIRWIGWSPPKMNFVKLNTDGA-YKENRAAGCGGVIRGCE 1206

Query: 319  GAWMCGYSRSLGFCNAYVSELWGVYEGI 236
            G W+ GY++ +G C+A+V+ELWGV EG+
Sbjct: 1207 GEWLGGYAKGVGLCSAFVAELWGVLEGL 1234



 Score = 48.9 bits (115), Expect(2) = 3e-62
 Identities = 23/61 (37%), Positives = 39/61 (63%)
 Frame = -1

Query: 198  IETDSMLIADILQRKLLGRSDGWSLVRKIRHELTDNSWQIVILHCYKEANRCTHTLAHIG 19
            +  DS  +  +++ + LG S G +LV++I   L D +W++ I H Y+EAN+C   LA++G
Sbjct: 1247 LNIDSEAVVKVVKARQLGSSSGAALVKQIWRML-DMNWKVEISHTYREANKCADALANLG 1305

Query: 18   S 16
            S
Sbjct: 1306 S 1306


>dbj|GAU25543.1| hypothetical protein TSUD_259770 [Trifolium subterraneum]
          Length = 633

 Score =  216 bits (551), Expect = 2e-61
 Identities = 113/278 (40%), Positives = 157/278 (56%), Gaps = 5/278 (1%)
 Frame = -3

Query: 1024 PPSTMEGDDICLWPGSSDGKFTIASAYNLLNNFTGMPVTDIWKRVWSIAAKERVRQFVWL 845
            PP    G D  +  G +   F++ S YN L  F       +W RVW + A ERVR F+WL
Sbjct: 266  PPHVDNGRDERVGVGGNKKDFSVTSMYNNLCGFNKDDAHYMWGRVWKLKAPERVRTFIWL 325

Query: 844  LCHGRLLTNVRKARMNLGTPYCHHCRTIEESTLRVLHDCPLALTVWLNIVHPKLRTKFLE 665
            + H +LLTN  K+ M L    C +CR +EE+TL VL DC LA  +W ++V    R     
Sbjct: 326  VMHNKLLTNSLKSVMGLSHAMCSYCRVVEETTLHVLRDCTLAKKIWSHVVPLASR----- 380

Query: 664  SDLHDWISDNMGTDT----QLEWAAIWANACHLIWMWRNKIIHNEDFVMPWKPWSLPINE 497
            S L +WI  N+        +  W   WA AC+L+W WRNK +H E F+ P +P     N 
Sbjct: 381  SGLQEWICFNLNNFVMGICEGTWNVFWAMACYLLWNWRNKELHVEGFLRPNRPVQHVRNM 440

Query: 496  TKDY-HLLEKDQINKKIKTKVTKMIGWVPPIEGWLKLNSDGASNKECGIAGCGGLVRDQN 320
              DY H ++   I    +++V   IGWVPP   ++KLN+DGAS K+  +AGCGG+VR   
Sbjct: 441  AADYIHAMQNSSIMVN-RSQVASRIGWVPPRADYIKLNTDGAS-KKMQLAGCGGVVRGSQ 498

Query: 319  GAWMCGYSRSLGFCNAYVSELWGVYEGIILAMTKGYKK 206
            G W+ GY++ +G CNA+V+ELWGV EG+      G++K
Sbjct: 499  GEWIGGYAKCVGMCNAFVAELWGVLEGLRFVRNMGFRK 536


>gb|PNY10278.1| ribonuclease H [Trifolium pratense]
          Length = 374

 Score =  209 bits (533), Expect = 3e-61
 Identities = 103/242 (42%), Positives = 135/242 (55%), Gaps = 4/242 (1%)
 Frame = -3

Query: 1024 PPSTMEGDDICLWPGSSDGKFTIASAYNLLNNFTGMPVTDIWKRVWSIAAKERVRQFVWL 845
            PP   + DDI  WP    G FT+ASAYN+L +         W  VW I A ERVR FVWL
Sbjct: 134  PPEDAQDDDINYWPAGKHGNFTVASAYNILADINCQHNNTTWNIVWKIQACERVRAFVWL 193

Query: 844  LCHGRLLTNVRKARMNLGTPYCHHCRTIEESTLRVLHDCPLALTVWLNIVHPKLRTKFLE 665
            L HGR+LT+ R ++MNLG P+C  C    E+ L VL DC  ++ VWLNIVH   R  F  
Sbjct: 194  LKHGRMLTHYRMSKMNLGLPFCTFCEDEIETELHVLRDCSKSMQVWLNIVHDSSREVFFN 253

Query: 664  SDLHDWISDNMGTDTQ----LEWAAIWANACHLIWMWRNKIIHNEDFVMPWKPWSLPINE 497
            +D   WI+ N+  D Q      W + WA ACH +W WRNK  H + F  P++P  +    
Sbjct: 254  ADFQQWINMNLHGDIQGVDVNNWQSYWAIACHALWTWRNKEKHYDCFNRPYRPHLVIKQY 313

Query: 496  TKDYHLLEKDQINKKIKTKVTKMIGWVPPIEGWLKLNSDGASNKECGIAGCGGLVRDQNG 317
              +Y    +   N  +  +V + IGW PP EGW+ +NSDGA  KE   +GCGG++R  + 
Sbjct: 314  MTEYEKSNQVDHNVVVLLRVMRQIGWCPPSEGWIIINSDGA-KKENHYSGCGGILRGISA 372

Query: 316  AW 311
             W
Sbjct: 373  EW 374


>gb|PNX79929.1| ribonuclease H, partial [Trifolium pratense]
          Length = 709

 Score =  216 bits (550), Expect = 9e-61
 Identities = 103/274 (37%), Positives = 154/274 (56%), Gaps = 4/274 (1%)
 Frame = -3

Query: 1024 PPSTMEGDDICLWPGSSDGKFTIASAYNLLNNFTGMPVTDIWKRVWSIAAKERVRQFVWL 845
            PP   +G D  +WPG   G+FT++SAY L+  +  +    +WK +W++   ER+R F+W 
Sbjct: 339  PPIDTDGADERVWPGDRLGRFTVSSAYKLVCGYHALEPDAMWKHIWNLEVPERIRCFIWR 398

Query: 844  LCHGRLLTNVRKARMNLGTPYCHHCRTIEESTLRVLHDCPLALTVWLNIVHPKLRTKFLE 665
            L +GRL TN    R   GTPYC HC   EE+ +  L DCPLA   W ++V  + R  F  
Sbjct: 399  LKYGRLTTNKTCNRWGYGTPYCDHCVGEEETIIHALRDCPLAHNTWQHLVPIQNRLDFFT 458

Query: 664  SDLHDWISDNMGTDTQL----EWAAIWANACHLIWMWRNKIIHNEDFVMPWKPWSLPINE 497
             + H W   NM + T L    EW  IWA+ C  +W+WRNK   + ++V P        N 
Sbjct: 459  CNYHVWFQRNMESVTSLEGGIEWRVIWASTCFHLWLWRNKEKFDTEYVRPCLSSRYIHNY 518

Query: 496  TKDYHLLEKDQINKKIKTKVTKMIGWVPPIEGWLKLNSDGASNKECGIAGCGGLVRDQNG 317
             ++Y+   +         +V   + W  P+  W  +N+DGA   + GIAGCGG++RD  G
Sbjct: 519  VENYYKAHRSIALIMEHPRVVINVRWEAPLVSWNSINTDGA--VQHGIAGCGGVLRDHRG 576

Query: 316  AWMCGYSRSLGFCNAYVSELWGVYEGIILAMTKG 215
            AW+ G+++++G  NA+++ELWG YEG+ LA  +G
Sbjct: 577  AWIGGFAKNIGTTNAFIAELWGAYEGLCLARRRG 610


>gb|PNY12120.1| 3-ketoacyl-CoA synthase, partial [Trifolium pratense]
          Length = 609

 Score =  214 bits (544), Expect = 1e-60
 Identities = 93/228 (40%), Positives = 148/228 (64%)
 Frame = -3

Query: 889 WSIAAKERVRQFVWLLCHGRLLTNVRKARMNLGTPYCHHCRTIEESTLRVLHDCPLALTV 710
           W I   E VR   W  C    LT  R+++M++GTPYCHHC++  E+TL VL DCPLA+ +
Sbjct: 139 WMIRNGECVR--AWEHCW---LTEGRRSQMHIGTPYCHHCQSTIETTLHVLRDCPLAMII 193

Query: 709 WLNIVHPKLRTKFLESDLHDWISDNMGTDTQLEWAAIWANACHLIWMWRNKIIHNEDFVM 530
           W+N V  +++ +F ++DL+DWI  N+    +  W   WA  CH +W WRNK+IH+E F+M
Sbjct: 194 WVNSVDVQIQNQFFDTDLNDWIELNI---NKPRWVQFWATGCHALWTWRNKLIHDESFIM 250

Query: 529 PWKPWSLPINETKDYHLLEKDQINKKIKTKVTKMIGWVPPIEGWLKLNSDGASNKECGIA 350
           P +PW      T+ Y +    Q    +  +V   + W+P   GW+++N+DGAS K   +A
Sbjct: 251 PLQPWKEIHRSTQLYEMHSSVQSTVNLVERVVTNVRWLPLEPGWVRINTDGAS-KGDEVA 309

Query: 349 GCGGLVRDQNGAWMCGYSRSLGFCNAYVSELWGVYEGIILAMTKGYKK 206
           GCGG+++ ++G+W+CG+++ +G C+AYV+ELWGV E + +A  +G+++
Sbjct: 310 GCGGMIKGEDGSWICGFTKGVGVCSAYVAELWGVLEALQIARARGFRQ 357


>gb|PNY03121.1| ribonuclease H, partial [Trifolium pratense]
          Length = 952

 Score =  217 bits (553), Expect(2) = 1e-60
 Identities = 103/267 (38%), Positives = 150/267 (56%), Gaps = 4/267 (1%)
 Frame = -3

Query: 1024 PPSTMEGDDICLWPGSSDGKFTIASAYNLLNNFTGMPVTDIWKRVWSIAAKERVRQFVWL 845
            PP+   G D  +  G S   F++AS YN +  F       +W  +W +   ERVR FVWL
Sbjct: 601  PPNEEHGRDERIGVGGSTCDFSVASMYNNICGFHSDATVGMWTSIWKLKVPERVRAFVWL 660

Query: 844  LCHGRLLTNVRKARMNLGTPYCHHCRTIEESTLRVLHDCPLALTVWLNIVHPKLRTKFLE 665
            L H RLLTN  K  M L    CH+C  +EE+TL V+ DCP A+ +W  ++  + + K++ 
Sbjct: 661  LTHDRLLTNSLKRNMGLSHAMCHYCGDVEETTLHVMRDCPKAMEIWAVVIPVQEKGKYMI 720

Query: 664  SDLHDWISDNMGTDT----QLEWAAIWANACHLIWMWRNKIIHNEDFVMPWKPWSLPINE 497
             DL  W+  N+        +  W   WA ACH +W WRNK +H+ED++ P  P    + +
Sbjct: 721  GDLKQWVCYNLQNSITWSGKGSWRDYWAQACHCLWFWRNKELHDEDYMRPINPAHQVLKQ 780

Query: 496  TKDYHLLEKDQINKKIKTKVTKMIGWVPPIEGWLKLNSDGASNKECGIAGCGGLVRDQNG 317
              +Y     +      +TK  + IGW PP   ++KLN+DGA  KE   AGCGG++R   G
Sbjct: 781  RWEYIAAATNNSVVLERTKEVRWIGWRPPKPNFVKLNTDGA-YKENKAAGCGGVIRGSEG 839

Query: 316  AWMCGYSRSLGFCNAYVSELWGVYEGI 236
             WM G+++ +G C+A+V+ELWGV EG+
Sbjct: 840  EWMGGFAKGVGLCSAFVAELWGVLEGL 866



 Score = 45.8 bits (107), Expect(2) = 1e-60
 Identities = 20/63 (31%), Positives = 39/63 (61%)
 Frame = -1

Query: 207  KLIIETDSMLIADILQRKLLGRSDGWSLVRKIRHELTDNSWQIVILHCYKEANRCTHTLA 28
            K+ +  DS  +  +++ + +  S G +LV++I   L D +W++ + H Y+EAN+C   LA
Sbjct: 876  KVELNIDSEAVVQVVKNRXMSSSLGVALVKQI-WRLLDMNWEVEVSHTYREANKCADALA 934

Query: 27   HIG 19
            ++G
Sbjct: 935  NLG 937


>gb|PNY06182.1| ribonuclease H [Trifolium pratense]
          Length = 686

 Score =  215 bits (547), Expect = 2e-60
 Identities = 105/277 (37%), Positives = 158/277 (57%), Gaps = 6/277 (2%)
 Frame = -3

Query: 1024 PPSTMEGDDICLWPGSSDGKFTIASAYNLLNNFTGMPVTDIWKRVWSIAAKERVRQFVWL 845
            PP   +GDD+ +WPG   G+FT++SAY++L     +    +W+ +W + A ER+R FVW 
Sbjct: 316  PPMVEDGDDVRVWPGDKRGRFTVSSAYSMLQGHHNLLFDSLWRSIWKLDAPERIRCFVWQ 375

Query: 844  LCHGRLLTNVRKARMNLGTPYCHHCRTIEESTLRVLHDCPLALTVWLNIVHPKLRTKFLE 665
            L +GRL TN   +R     P C +C  IEE+ + V+ DCP+A  +W N+V  + R  F  
Sbjct: 376  LMYGRLPTNSACSRWGHTVPQCDYCVGIEETMIHVMRDCPVAHEIWNNLVPLQGRLAFFT 435

Query: 664  SDLHDWISDNMGTDTQ----LEWAAIWANACHLIWMWRNKIIHNEDFVMPWKPWSLPINE 497
             +  +W+  NM    +    +EW  +WA AC+ IW WRNK   + +FV P  P    +N 
Sbjct: 436  CNYQNWVVINMEVTVKTIEGVEWRVVWATACYYIWRWRNKFKFDSNFVRPLHPHKEIMNY 495

Query: 496  TKDYHLLEK--DQINKKIKTKVTKMIGWVPPIEGWLKLNSDGASNKECGIAGCGGLVRDQ 323
               Y+  +   D ++   + ++   I W  P    + LN+DGA     G+AGCGG  RD 
Sbjct: 496  VDCYNKAKPVVDVVSASSRRRID--IRWRAPQRDCICLNTDGALLG--GVAGCGGAFRDS 551

Query: 322  NGAWMCGYSRSLGFCNAYVSELWGVYEGIILAMTKGY 212
            NGAW  G+++++G  +AYV+ELWGVYEG+ LA  K +
Sbjct: 552  NGAWKGGFAKNIGSASAYVAELWGVYEGLCLARRKSF 588


>gb|PNY01766.1| ribonuclease H [Trifolium pratense]
          Length = 300

 Score =  201 bits (511), Expect = 6e-59
 Identities = 102/238 (42%), Positives = 142/238 (59%), Gaps = 4/238 (1%)
 Frame = -3

Query: 913 VTDIWKRVWSIAAKERVRQFVWLLCHGRLLTNVRKARMNLGTPYCHHCRTIEESTLRVLH 734
           +T+ W +VW I   ER+  FVWL+ H RLLT  R   +++G PYC+ C  + E+TLRVL 
Sbjct: 1   MTNDWDKVWKIEVPERIPSFVWLIKHDRLLTRYRLNYVHIGEPYCYRCGNVMETTLRVLR 60

Query: 733 DCPLALTVWLNIVHPKLRTKFLESDLHDWISDNMGTDTQLEWAAIWANACHLIWMWRNKI 554
           DCPLA+ +WLN V+ +    F   DL DWI  N     Q +W   WA ACH +W WRNK+
Sbjct: 61  DCPLAMVIWLNAVNLQQCEAFFTVDLSDWIKINF---NQQKWVNFWAKACHALWTWRNKL 117

Query: 553 IHNEDFVMPWKPWSLPINETKDYHLLEKDQINKK----IKTKVTKMIGWVPPIEGWLKLN 386
           IH++DF+MP +PW L I+    ++    +QIN      ++ KV   I W P   GW+K+N
Sbjct: 118 IHDDDFIMPNRPW-LEISRRVQHY---ANQINVSSTVDLRNKVMTDIRW-PADPGWVKIN 172

Query: 385 SDGASNKECGIAGCGGLVRDQNGAWMCGYSRSLGFCNAYVSELWGVYEGIILAMTKGY 212
           ++GAS K  G+AGCGG++R +         +   F   YV+ELWGV EG+ L   +GY
Sbjct: 173 TNGAS-KGGGVAGCGGVIRGEMVVGCVALLKVWVFVVPYVAELWGVLEGLQLVRARGY 229


>dbj|GAU13938.1| hypothetical protein TSUD_262650 [Trifolium subterraneum]
          Length = 875

 Score =  210 bits (535), Expect = 8e-58
 Identities = 110/284 (38%), Positives = 162/284 (57%), Gaps = 11/284 (3%)
 Frame = -3

Query: 1024 PPSTMEGDDICLWPGSSDGKFTIASAYNLLNNFTGMPV-TDIWKRVWSIAAKERVRQFVW 848
            PP    G D  +   S+   F++   Y  L       V ++ W +VW +   ERVR FVW
Sbjct: 502  PPCEENGSDEPVGICSNSNGFSVTIMYEQLCGIVRDNVESNNWIKVWKLNVPERVRCFVW 561

Query: 847  LLCHGRLLTNVRKARMNLGTPYCHHCRTIEESTLRVLHDCPLALTVWLNIVHPKLRTKFL 668
            LL H RLLTN RK+RM LG   C++C  +EE+TL  + DC L +  WL +V  + R+ F 
Sbjct: 562  LLLHDRLLTNYRKSRMGLGHAMCNYCGDLEETTLHAIRDCALIIPFWLQVVPMEDRSSFF 621

Query: 667  ESDLHDWISDNM--------GTDTQLEWAAIWANACHLIWMWRNKIIHNEDFVMPWKPWS 512
              D  DWIS N+        G+D    W   WA  CH +WMWRNK  H+E+FV P +P +
Sbjct: 622  MEDTQDWISRNLMKGRTRRRGSD----WCDFWATTCHSLWMWRNKEAHDEEFVRPMQPVN 677

Query: 511  LPINETKDYHLLEK--DQINKKIKTKVTKMIGWVPPIEGWLKLNSDGASNKECGIAGCGG 338
                  ++Y   ++  D ++ +  T V   IGW PP   ++KLN+DGA  K+   AGCGG
Sbjct: 678  YVQKRVEEYQHAKQASDLLDGREYTLVD--IGWKPPSGSFVKLNTDGA-RKDNNKAGCGG 734

Query: 337  LVRDQNGAWMCGYSRSLGFCNAYVSELWGVYEGIILAMTKGYKK 206
            ++R  +G W+ G+++ +G C+A+++ELWGV+EG+ LA    ++K
Sbjct: 735  IIRGNHGEWLGGFAKGVGECSAFIAELWGVFEGLSLAKRMCFRK 778