BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus22_contig00024178
         (1601 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX95703.1| retrovirus-related Pol polyprotein from transposo...   667   0.0  
gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposo...   669   0.0  
gb|KYP48058.1| Retrovirus-related Pol polyprotein from transposo...   648   0.0  
gb|PNX92571.1| histone deacetylase [Trifolium pratense]               676   0.0  
gb|PNX93473.1| retrovirus-related Pol polyprotein from transposo...   666   0.0  
gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposo...   669   0.0  
gb|PNX93462.1| histone deacetylase, partial [Trifolium pratense]      665   0.0  
gb|KYP50410.1| Retrovirus-related Pol polyprotein from transposo...   633   0.0  
gb|PNX77046.1| retrovirus-related Pol polyprotein from transposo...   628   0.0  
gb|PNY08092.1| histone deacetylase [Trifolium pratense]               655   0.0  
gb|PNY12955.1| retrovirus-related Pol polyprotein from transposo...   625   0.0  
gb|KYP46114.1| Retrovirus-related Pol polyprotein from transposo...   622   0.0  
gb|KYP67571.1| Retrovirus-related Pol polyprotein from transposo...   619   0.0  
gb|KYP67562.1| Retrovirus-related Pol polyprotein from transposo...   618   0.0  
gb|PNX91972.1| retrovirus-related Pol polyprotein from transposo...   651   0.0  
gb|PNX84939.1| retrovirus-related Pol polyprotein from transposo...   616   0.0  
gb|KYP32233.1| Retrovirus-related Pol polyprotein from transposo...   613   0.0  
gb|KYP67039.1| Retrovirus-related Pol polyprotein from transposo...   638   0.0  
gb|KYP51570.1| Retrovirus-related Pol polyprotein from transposo...   610   0.0  
gb|PNX78102.1| retrovirus-related Pol polyprotein from transposo...   612   0.0  

>gb|PNX95703.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 975

 Score =  667 bits (1720), Expect = 0.0
 Identities = 331/514 (64%), Positives = 403/514 (78%), Gaps = 12/514 (2%)
 Frame = +1

Query: 91   TINSPEHTIPSTLPTVTLPTNQPNSATTTN------------TQPHNTHAMQTRSKSGIT 234
            TI     T+P+T+ T+    N P S T +N            T P N H MQTRSKSGI 
Sbjct: 391  TILPSSDTLPTTVETINHAPNPPPSLTISNSFNNPPLHPNKTTVPSNCHNMQTRSKSGIF 450

Query: 235  LPRLNPSVFLTTSEPTTTKQALKDPNWLAAMQAEYTALQNNKTWSLVPLPPNRKAIGCKW 414
            LP+ +P+V LT SEP + KQAL+DP WL AMQ+E+ ALQ N TWSLVPLP NRKAIGCKW
Sbjct: 451  LPK-HPTVLLTHSEPKSVKQALQDPKWLTAMQSEFDALQQNNTWSLVPLPANRKAIGCKW 509

Query: 415  VFRVKENADGTVSKYKARLVAKGFHQVQGFDFHETFSPVVKPVTIRVILTLALTYSWPIH 594
            +FR+KEN DG+++KYKARLVAKGFHQ+QGFDF ETFS VVKP+TIR+ILTLA++Y W + 
Sbjct: 510  IFRIKENPDGSINKYKARLVAKGFHQLQGFDFTETFSLVVKPLTIRLILTLAISYKWSLQ 569

Query: 595  QLDVNNAFLNGIINEEVYMQQPSGFIASDPTLVCKLHKSLYGLKQALRQWFEKLTGTSLT 774
            QLDVNNAFLNG++ EEVYM+QP GF  S+P++VCKL+K+LYGLKQA RQWF+KLT T + 
Sbjct: 570  QLDVNNAFLNGVLEEEVYMEQPQGFENSNPSMVCKLNKALYGLKQAPRQWFDKLTTTLVR 629

Query: 775  LGFKSSKCDPSLFIFRAKSSIAYLLVYVDDIILTGNSPSLLKIITSKLHQNFALKELGDL 954
             GF++SKCDPSLFI    + I YLLVYVDDII+TG+S  L+  +  KL+  F+LK+LG L
Sbjct: 630  FGFQTSKCDPSLFILNKDNHIVYLLVYVDDIIITGSSSQLVTSLVHKLNSVFSLKQLGLL 689

Query: 955  EYFLGIEVHKQANGSLLLTQSKYIRDLLAKTGMQESAAIASPMASSTKLSKMGSLQFKDP 1134
            +YFLGIEV    N +LLLTQSKYIRDLL KT M ES  I++PM S+ KLSK+GS +F DP
Sbjct: 690  DYFLGIEVKHLPNSTLLLTQSKYIRDLLTKTNMLESNPISTPMMSTCKLSKVGSDKFHDP 749

Query: 1135 TFYRSVVGALQYATLTRPELSYSVNKVCQFMADPLDTHWAAVKRILRYLKGTIHHGLVFN 1314
            + YRSVVG+LQYAT+TRPE++Y+VNKVCQFM++PLD+HW AVKRILRYLK T+H GLV  
Sbjct: 750  SLYRSVVGSLQYATITRPEIAYAVNKVCQFMSNPLDSHWTAVKRILRYLKETLHMGLVLY 809

Query: 1315 AANKQKPFTLAGFCDADWASDPDDRRSTSGSAIYFGPNLVSWWSRKQPLVARSSAEAEHR 1494
              +  KP +L  FCDADWASDPDDRRSTSG+AI+FG +LVSWWSRKQ +VARSS EAE+R
Sbjct: 810  PFDVHKPISLKVFCDADWASDPDDRRSTSGAAIFFGTSLVSWWSRKQQVVARSSTEAEYR 869

Query: 1495 SLAHTTSEILWIQTLLSELHVKTTHPIIHCDNQS 1596
            S A  T+ +LWIQTLL EL +  + PII+CDNQS
Sbjct: 870  SRAQATAYVLWIQTLLKELTIPFSQPIIYCDNQS 903


>gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1073

 Score =  669 bits (1726), Expect = 0.0
 Identities = 330/501 (65%), Positives = 393/501 (78%)
 Frame = +1

Query: 97   NSPEHTIPSTLPTVTLPTNQPNSATTTNTQPHNTHAMQTRSKSGITLPRLNPSVFLTTSE 276
            N+  HT PSTL   T    +P+S+   +  PHN H M TR+K GI  PRL P++ LT  E
Sbjct: 503  NTAAHTSPSTLSIPTSSNLEPSSSPIIH--PHNVHPMTTRAKDGIVKPRLQPTLLLTQVE 560

Query: 277  PTTTKQALKDPNWLAAMQAEYTALQNNKTWSLVPLPPNRKAIGCKWVFRVKENADGTVSK 456
            P TTKQAL +P W AAMQ EY AL +N TWSLVPLPP+R AIGCKWVFRVKEN +G+V K
Sbjct: 561  PKTTKQALSNPTWSAAMQTEYNALLHNNTWSLVPLPPHRTAIGCKWVFRVKENPNGSVQK 620

Query: 457  YKARLVAKGFHQVQGFDFHETFSPVVKPVTIRVILTLALTYSWPIHQLDVNNAFLNGIIN 636
            YKARLVAKGF+Q  GFD+HETFSPV+KPVT+R+ILTLALT+ WPI QLDVNNAFLNG + 
Sbjct: 621  YKARLVAKGFNQQFGFDYHETFSPVIKPVTVRLILTLALTHRWPIQQLDVNNAFLNGTLE 680

Query: 637  EEVYMQQPSGFIASDPTLVCKLHKSLYGLKQALRQWFEKLTGTSLTLGFKSSKCDPSLFI 816
            EEVYMQQP GF ASD  LVCKLHK++YGLKQA R WF+KL  T L L F +SKCDPSLFI
Sbjct: 681  EEVYMQQPPGFEASDKNLVCKLHKAIYGLKQAPRAWFDKLKSTLLQLNFYASKCDPSLFI 740

Query: 817  FRAKSSIAYLLVYVDDIILTGNSPSLLKIITSKLHQNFALKELGDLEYFLGIEVHKQANG 996
            +   +++ Y+LVYVDDII+TGN+ S+L  + S+LH  F+LK+LGDL++FLGIEV  Q +G
Sbjct: 741  YSQGNNVIYILVYVDDIIITGNNSSILHTLVSQLHSIFSLKDLGDLDFFLGIEVKSQPDG 800

Query: 997  SLLLTQSKYIRDLLAKTGMQESAAIASPMASSTKLSKMGSLQFKDPTFYRSVVGALQYAT 1176
            SL+LTQSKYIRDLL +T M+ S  I+SPM S +KLSK+GS  F D + YRSVVGALQYAT
Sbjct: 801  SLILTQSKYIRDLLNRTDMEGSKPISSPMISGSKLSKVGSEDFLDASLYRSVVGALQYAT 860

Query: 1177 LTRPELSYSVNKVCQFMADPLDTHWAAVKRILRYLKGTIHHGLVFNAANKQKPFTLAGFC 1356
            +TRPE+S+SVNKVCQFM+ PL  HWAAVKRILRYLKGT   GL    A+     ++  +C
Sbjct: 861  ITRPEISFSVNKVCQFMSHPLTHHWAAVKRILRYLKGTTSWGLRLQPASSSSSLSIHAYC 920

Query: 1357 DADWASDPDDRRSTSGSAIYFGPNLVSWWSRKQPLVARSSAEAEHRSLAHTTSEILWIQT 1536
            DADWASDPDDRRSTSG++I+ GPNLVSWWS+KQ +VARSS EAE+RSLA  T+E+ WIQT
Sbjct: 921  DADWASDPDDRRSTSGASIFLGPNLVSWWSKKQTVVARSSTEAEYRSLALATTEVTWIQT 980

Query: 1537 LLSELHVKTTHPIIHCDNQST 1599
            LLSEL V  + PII CDN ST
Sbjct: 981  LLSELKVTHSTPIIFCDNLST 1001


>gb|KYP48058.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 539

 Score =  648 bits (1671), Expect = 0.0
 Identities = 321/465 (69%), Positives = 376/465 (80%)
 Frame = +1

Query: 205  MQTRSKSGITLPRLNPSVFLTTSEPTTTKQALKDPNWLAAMQAEYTALQNNKTWSLVPLP 384
            MQTRSKSGI  P+  PSV L  SEP   KQALKDP WL AM+ EY+AL  N TW+LV LP
Sbjct: 1    MQTRSKSGIHKPKY-PSVLLAQSEPKNVKQALKDPKWLEAMKQEYSALLKNNTWTLVQLP 59

Query: 385  PNRKAIGCKWVFRVKENADGTVSKYKARLVAKGFHQVQGFDFHETFSPVVKPVTIRVILT 564
            P+R AIGCKWVFR+KEN+DG+V++YKARLVAKGF Q  GFDF+ETFSP++KPVTIR+ILT
Sbjct: 60   PDRNAIGCKWVFRIKENSDGSVNRYKARLVAKGFLQQPGFDFNETFSPIIKPVTIRLILT 119

Query: 565  LALTYSWPIHQLDVNNAFLNGIINEEVYMQQPSGFIASDPTLVCKLHKSLYGLKQALRQW 744
            LA++  W IHQLDVNNAFLNG +NE VYMQQP GF   D TLVCKL+K+LYGLKQA RQW
Sbjct: 120  LAISNHWDIHQLDVNNAFLNGSLNETVYMQQPPGFEVPDSTLVCKLNKALYGLKQAPRQW 179

Query: 745  FEKLTGTSLTLGFKSSKCDPSLFIFRAKSSIAYLLVYVDDIILTGNSPSLLKIITSKLHQ 924
            FE+L  T L  GFK+SKCDPSLF +  +S+I YLLVYVDDII+TGNS    + +  +L+ 
Sbjct: 180  FERLQYTLLQFGFKASKCDPSLFTYHMQSNIVYLLVYVDDIIITGNSFQFTQQLIDQLNS 239

Query: 925  NFALKELGDLEYFLGIEVHKQANGSLLLTQSKYIRDLLAKTGMQESAAIASPMASSTKLS 1104
             F+LK+LG L+YFLGIEV    NGS+LLTQSKYIRDLL +T M E+ AI+SPM SS KLS
Sbjct: 240  IFSLKQLGKLDYFLGIEVRHLQNGSVLLTQSKYIRDLLQRTNMLEANAISSPMVSSCKLS 299

Query: 1105 KMGSLQFKDPTFYRSVVGALQYATLTRPELSYSVNKVCQFMADPLDTHWAAVKRILRYLK 1284
            K GS    D TFYRSVVGALQYAT+TRPELS++VNKVCQFMA PL++HW AVKRILRYLK
Sbjct: 300  KHGSDTLADSTFYRSVVGALQYATITRPELSFAVNKVCQFMAHPLESHWNAVKRILRYLK 359

Query: 1285 GTIHHGLVFNAANKQKPFTLAGFCDADWASDPDDRRSTSGSAIYFGPNLVSWWSRKQPLV 1464
            GT+ +GL    A   +PF+L  +CDADWA+DPDDRRSTSG+AI+ GPNL+SWWSRKQP+V
Sbjct: 360  GTMFYGLHLQPARVHQPFSLYAYCDADWAADPDDRRSTSGAAIFLGPNLISWWSRKQPVV 419

Query: 1465 ARSSAEAEHRSLAHTTSEILWIQTLLSELHVKTTHPIIHCDNQST 1599
            ARSS EAE+RSLA  TSE+LWIQTLL EL V  + P I+CDNQST
Sbjct: 420  ARSSTEAEYRSLAQATSEVLWIQTLLHELRVPFSTPTIYCDNQST 464


>gb|PNX92571.1| histone deacetylase [Trifolium pratense]
          Length = 1488

 Score =  676 bits (1743), Expect = 0.0
 Identities = 339/528 (64%), Positives = 407/528 (77%), Gaps = 18/528 (3%)
 Frame = +1

Query: 67   HINQTPHPTINSPE---HTIPSTLPTVTLPTNQPNSATTTNTQPH--------------- 192
            HI+  P P IN P      + +T    + P + P+ +T ++T  H               
Sbjct: 894  HISSPPTP-INDPSPPNSPLSATASDQSSPLSTPSPSTASSTSHHVSIPPRAVPVPIIPV 952

Query: 193  NTHAMQTRSKSGITLPRLNPSVFLTTSEPTTTKQALKDPNWLAAMQAEYTALQNNKTWSL 372
            N H MQTR+KSG   P+L     +  SEP + KQAL DP+W AAMQ EY AL NN TW+L
Sbjct: 953  NAHNMQTRAKSGFKQPKL----LVAHSEPKSVKQALLDPSWHAAMQTEYDALLNNNTWTL 1008

Query: 373  VPLPPNRKAIGCKWVFRVKENADGTVSKYKARLVAKGFHQVQGFDFHETFSPVVKPVTIR 552
            VPLPP+R+AIGCKWVFR+KEN DGTV+KYKARLVAKGFHQ QGFDF ETFSPVVKPVTIR
Sbjct: 1009 VPLPPDRQAIGCKWVFRIKENPDGTVNKYKARLVAKGFHQRQGFDFLETFSPVVKPVTIR 1068

Query: 553  VILTLALTYSWPIHQLDVNNAFLNGIINEEVYMQQPSGFIASDPTLVCKLHKSLYGLKQA 732
            VILT+A+T  W I QLDVNNAFLNG+++EEVYM QP GF +SD +LVCKLHK+LYGLKQA
Sbjct: 1069 VILTIAITKGWSIQQLDVNNAFLNGVLDEEVYMLQPQGFESSDSSLVCKLHKALYGLKQA 1128

Query: 733  LRQWFEKLTGTSLTLGFKSSKCDPSLFIFRAKSSIAYLLVYVDDIILTGNSPSLLKIITS 912
             RQWFE+L  T L LGFKSSKCDPSLF++ + +   YLLVYVDDII+T N+ +LL    S
Sbjct: 1129 PRQWFERLQSTLLLLGFKSSKCDPSLFVYSSATDTIYLLVYVDDIIITSNNTTLLHSTIS 1188

Query: 913  KLHQNFALKELGDLEYFLGIEVHKQANGSLLLTQSKYIRDLLAKTGMQESAAIASPMASS 1092
            KL++ F+LK LG+L+YFLGIEVH  ++GSLLLTQSKY+RDLL +T M +S+ +++PM S+
Sbjct: 1189 KLNKAFSLKHLGNLDYFLGIEVHHLSSGSLLLTQSKYLRDLLTRTHMLDSSPVSTPMQST 1248

Query: 1093 TKLSKMGSLQFKDPTFYRSVVGALQYATLTRPELSYSVNKVCQFMADPLDTHWAAVKRIL 1272
             KL+K+GS    DP  YRSVVGALQYAT+TRPE+S+SVNK CQFM+ PL+THW AVKRIL
Sbjct: 1249 CKLTKLGSSPLDDPFMYRSVVGALQYATITRPEISFSVNKACQFMSHPLETHWIAVKRIL 1308

Query: 1273 RYLKGTIHHGLVFNAANKQKPFTLAGFCDADWASDPDDRRSTSGSAIYFGPNLVSWWSRK 1452
            RYLKGT+ HGL+ + A   KP +L  FCDADWASDPDDRRSTSG+AIYFGPNLVSWWS+K
Sbjct: 1309 RYLKGTLDHGLLLSPALPPKPPSLKAFCDADWASDPDDRRSTSGAAIYFGPNLVSWWSKK 1368

Query: 1453 QPLVARSSAEAEHRSLAHTTSEILWIQTLLSELHVKTTHPIIHCDNQS 1596
            QP+VARSS EAE+RSLAH T+E+LWIQTLL+ELHV    P I CDNQS
Sbjct: 1369 QPVVARSSTEAEYRSLAHATAELLWIQTLLTELHVPFAAPTILCDNQS 1416


>gb|PNX93473.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1181

 Score =  666 bits (1718), Expect = 0.0
 Identities = 326/516 (63%), Positives = 402/516 (77%), Gaps = 8/516 (1%)
 Frame = +1

Query: 73   NQTPHPTIN--------SPEHTIPSTLPTVTLPTNQPNSATTTNTQPHNTHAMQTRSKSG 228
            + T HP+++        SP + I     T+   T  P + + + T+  NTHAMQTR+KSG
Sbjct: 596  DDTTHPSVSDALSSAQPSPTNNIVPPDITIHHLTEIPVNNSVSPTKLTNTHAMQTRAKSG 655

Query: 229  ITLPRLNPSVFLTTSEPTTTKQALKDPNWLAAMQAEYTALQNNKTWSLVPLPPNRKAIGC 408
            I  P+ NP + LT+SEP T KQALKDP W  AM+ E+ ALQ N+TW+LV LPPNRKAIGC
Sbjct: 656  IVRPKQNPKLLLTSSEPKTVKQALKDPQWYTAMKEEFDALQRNQTWTLVKLPPNRKAIGC 715

Query: 409  KWVFRVKENADGTVSKYKARLVAKGFHQVQGFDFHETFSPVVKPVTIRVILTLALTYSWP 588
            KWVFR KEN DG+++K KARLVAKGFHQ+ GFDF+ETFSPV+KP+TIR+IL LA++Y WP
Sbjct: 716  KWVFRTKENPDGSINKLKARLVAKGFHQLHGFDFNETFSPVIKPITIRLILALAISYKWP 775

Query: 589  IHQLDVNNAFLNGIINEEVYMQQPSGFIASDPTLVCKLHKSLYGLKQALRQWFEKLTGTS 768
            + QLD+NNAFLNG ++EEVYM QP GF  +D +LVCKL K+LYGLKQA RQWF+KL  T 
Sbjct: 776  LKQLDINNAFLNGSLDEEVYMVQPQGFETTDSSLVCKLQKALYGLKQAPRQWFDKLATTL 835

Query: 769  LTLGFKSSKCDPSLFIFRAKSSIAYLLVYVDDIILTGNSPSLLKIITSKLHQNFALKELG 948
            +  GFK+SKCDPSLFI+     + YLLVYVDDII+TG+S +L++ + +KL   F+LK+LG
Sbjct: 836  IQFGFKASKCDPSLFIYSHNRQVVYLLVYVDDIIITGSSLTLVQHLVTKLDSVFSLKQLG 895

Query: 949  DLEYFLGIEVHKQANGSLLLTQSKYIRDLLAKTGMQESAAIASPMASSTKLSKMGSLQFK 1128
            +L+YFLGIEV    +GSLLLTQSKYI+DLL KT M +S  IA+PM SS KLSK+GS    
Sbjct: 896  NLDYFLGIEVKHLTDGSLLLTQSKYIKDLLVKTNMIDSNPIATPMMSSCKLSKVGSDNVA 955

Query: 1129 DPTFYRSVVGALQYATLTRPELSYSVNKVCQFMADPLDTHWAAVKRILRYLKGTIHHGLV 1308
            DPT YRSVVG+LQYAT+TRPE+S++VNKVCQFM+ PL++HW AVKRILRYLKGT H GL 
Sbjct: 956  DPTLYRSVVGSLQYATITRPEISFAVNKVCQFMSAPLESHWTAVKRILRYLKGTSHIGLK 1015

Query: 1309 FNAANKQKPFTLAGFCDADWASDPDDRRSTSGSAIYFGPNLVSWWSRKQPLVARSSAEAE 1488
                N   P +L  +CDADWASDPDDRRSTSG+AI+FGPNLVSWWSRKQ +VARSS EAE
Sbjct: 1016 LFPTNVHHPLSLKAYCDADWASDPDDRRSTSGAAIFFGPNLVSWWSRKQQVVARSSTEAE 1075

Query: 1489 HRSLAHTTSEILWIQTLLSELHVKTTHPIIHCDNQS 1596
            +RSLA  T+++LW+QTLL+EL V  T P I+CDNQS
Sbjct: 1076 YRSLAQATADVLWVQTLLNELTVPFTTPTIYCDNQS 1111


>gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1408

 Score =  669 bits (1726), Expect = 0.0
 Identities = 330/501 (65%), Positives = 393/501 (78%)
 Frame = +1

Query: 97   NSPEHTIPSTLPTVTLPTNQPNSATTTNTQPHNTHAMQTRSKSGITLPRLNPSVFLTTSE 276
            N+  HT PSTL   T    +P+S+   +  PHN H M TR+K GI  PRL P++ LT  E
Sbjct: 838  NTAAHTSPSTLSIPTSSNLEPSSSPIIH--PHNVHPMTTRAKDGIVKPRLQPTLLLTQVE 895

Query: 277  PTTTKQALKDPNWLAAMQAEYTALQNNKTWSLVPLPPNRKAIGCKWVFRVKENADGTVSK 456
            P TTKQAL +P W AAMQ EY AL +N TWSLVPLPP+R AIGCKWVFRVKEN +G+V K
Sbjct: 896  PKTTKQALSNPTWSAAMQTEYNALLHNNTWSLVPLPPHRTAIGCKWVFRVKENPNGSVQK 955

Query: 457  YKARLVAKGFHQVQGFDFHETFSPVVKPVTIRVILTLALTYSWPIHQLDVNNAFLNGIIN 636
            YKARLVAKGF+Q  GFD+HETFSPV+KPVT+R+ILTLALT+ WPI QLDVNNAFLNG + 
Sbjct: 956  YKARLVAKGFNQQFGFDYHETFSPVIKPVTVRLILTLALTHRWPIQQLDVNNAFLNGTLE 1015

Query: 637  EEVYMQQPSGFIASDPTLVCKLHKSLYGLKQALRQWFEKLTGTSLTLGFKSSKCDPSLFI 816
            EEVYMQQP GF ASD  LVCKLHK++YGLKQA R WF+KL  T L L F +SKCDPSLFI
Sbjct: 1016 EEVYMQQPPGFEASDKNLVCKLHKAIYGLKQAPRAWFDKLKSTLLQLNFYASKCDPSLFI 1075

Query: 817  FRAKSSIAYLLVYVDDIILTGNSPSLLKIITSKLHQNFALKELGDLEYFLGIEVHKQANG 996
            +   +++ Y+LVYVDDII+TGN+ S+L  + S+LH  F+LK+LGDL++FLGIEV  Q +G
Sbjct: 1076 YSQGNNVIYILVYVDDIIITGNNSSILHTLVSQLHSIFSLKDLGDLDFFLGIEVKSQPDG 1135

Query: 997  SLLLTQSKYIRDLLAKTGMQESAAIASPMASSTKLSKMGSLQFKDPTFYRSVVGALQYAT 1176
            SL+LTQSKYIRDLL +T M+ S  I+SPM S +KLSK+GS  F D + YRSVVGALQYAT
Sbjct: 1136 SLILTQSKYIRDLLNRTDMEGSKPISSPMISGSKLSKVGSEDFLDASLYRSVVGALQYAT 1195

Query: 1177 LTRPELSYSVNKVCQFMADPLDTHWAAVKRILRYLKGTIHHGLVFNAANKQKPFTLAGFC 1356
            +TRPE+S+SVNKVCQFM+ PL  HWAAVKRILRYLKGT   GL    A+     ++  +C
Sbjct: 1196 ITRPEISFSVNKVCQFMSHPLTHHWAAVKRILRYLKGTTSWGLRLQPASSSSSLSIHAYC 1255

Query: 1357 DADWASDPDDRRSTSGSAIYFGPNLVSWWSRKQPLVARSSAEAEHRSLAHTTSEILWIQT 1536
            DADWASDPDDRRSTSG++I+ GPNLVSWWS+KQ +VARSS EAE+RSLA  T+E+ WIQT
Sbjct: 1256 DADWASDPDDRRSTSGASIFLGPNLVSWWSKKQTVVARSSTEAEYRSLALATTEVTWIQT 1315

Query: 1537 LLSELHVKTTHPIIHCDNQST 1599
            LLSEL V  + PII CDN ST
Sbjct: 1316 LLSELKVTHSTPIIFCDNLST 1336


>gb|PNX93462.1| histone deacetylase, partial [Trifolium pratense]
          Length = 1489

 Score =  665 bits (1716), Expect = 0.0
 Identities = 325/502 (64%), Positives = 391/502 (77%), Gaps = 16/502 (3%)
 Frame = +1

Query: 139  TLPTNQPNSATTTNTQ----------------PHNTHAMQTRSKSGITLPRLNPSVFLTT 270
            T+P N PNS  +  TQ                  NTH MQTRSKSGI LP+ NP++ LT 
Sbjct: 918  TIPENSPNSNNSNTTQITTNASDIQKSTPPNKSTNTHTMQTRSKSGIVLPKQNPTLLLTH 977

Query: 271  SEPTTTKQALKDPNWLAAMQAEYTALQNNKTWSLVPLPPNRKAIGCKWVFRVKENADGTV 450
            +EP T KQAL  P W  AM+ E+ ALQ N+TW+LV LPPNR AIGCKWVFR KEN DG++
Sbjct: 978  TEPKTVKQALSIPQWYNAMKDEFDALQRNQTWTLVSLPPNRSAIGCKWVFRTKENPDGSI 1037

Query: 451  SKYKARLVAKGFHQVQGFDFHETFSPVVKPVTIRVILTLALTYSWPIHQLDVNNAFLNGI 630
            +KYKARLVAKGFHQ  GFDF+ETFSPV+KPVTIR+IL+LA++Y WP+ QLD+NNAFLNG 
Sbjct: 1038 NKYKARLVAKGFHQKPGFDFNETFSPVIKPVTIRLILSLAISYKWPLKQLDINNAFLNGS 1097

Query: 631  INEEVYMQQPSGFIASDPTLVCKLHKSLYGLKQALRQWFEKLTGTSLTLGFKSSKCDPSL 810
            +NEEVYM QP GF   D +LVCKL+K+LYGLKQA RQWF+KLT T +  GFK+SKCDPSL
Sbjct: 1098 LNEEVYMVQPQGFEEKDSSLVCKLNKALYGLKQAPRQWFDKLTSTLIQFGFKASKCDPSL 1157

Query: 811  FIFRAKSSIAYLLVYVDDIILTGNSPSLLKIITSKLHQNFALKELGDLEYFLGIEVHKQA 990
            FI+     I YLLVYVDDII+TG+SP L++ + +KL   F+LK+LG+LEYFLGIEV   +
Sbjct: 1158 FIYSKNCQIVYLLVYVDDIIITGSSPDLVQHLVNKLDSVFSLKQLGELEYFLGIEVKNLS 1217

Query: 991  NGSLLLTQSKYIRDLLAKTGMQESAAIASPMASSTKLSKMGSLQFKDPTFYRSVVGALQY 1170
            +GSLLLTQ+KYI+DLL KT M +S  IA+PM SS KLSK+GS    D T YRSVVG+LQY
Sbjct: 1218 DGSLLLTQTKYIKDLLIKTNMLDSNPIATPMMSSCKLSKIGSDNMNDATLYRSVVGSLQY 1277

Query: 1171 ATLTRPELSYSVNKVCQFMADPLDTHWAAVKRILRYLKGTIHHGLVFNAANKQKPFTLAG 1350
            AT++RPE+S++VNKVCQFM+ PL++HW AVKRILRYLKGT H GL    AN   P +L  
Sbjct: 1278 ATISRPEISFAVNKVCQFMSAPLESHWVAVKRILRYLKGTSHLGLRLFPANINHPLSLRA 1337

Query: 1351 FCDADWASDPDDRRSTSGSAIYFGPNLVSWWSRKQPLVARSSAEAEHRSLAHTTSEILWI 1530
            FCDADWASDPDDRRSTSG+AI+FGPNL+SWWSRKQ +VARSS EAE+RSLA  T+++LW+
Sbjct: 1338 FCDADWASDPDDRRSTSGAAIFFGPNLISWWSRKQQVVARSSTEAEYRSLAQITADVLWL 1397

Query: 1531 QTLLSELHVKTTHPIIHCDNQS 1596
            QTLL EL V  T P ++CDNQS
Sbjct: 1398 QTLLKELTVPFTTPTVYCDNQS 1419


>gb|KYP50410.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 538

 Score =  633 bits (1633), Expect = 0.0
 Identities = 308/465 (66%), Positives = 373/465 (80%)
 Frame = +1

Query: 205  MQTRSKSGITLPRLNPSVFLTTSEPTTTKQALKDPNWLAAMQAEYTALQNNKTWSLVPLP 384
            M TR+K+GI  PRL P++ LT  EP  TKQAL    WLAAM+ EY AL NN TW+LV LP
Sbjct: 1    MTTRAKAGIVKPRLQPTLLLTHIEPKNTKQALASDTWLAAMKQEYNALLNNGTWTLVSLP 60

Query: 385  PNRKAIGCKWVFRVKENADGTVSKYKARLVAKGFHQVQGFDFHETFSPVVKPVTIRVILT 564
            PN+ AIGCKWVFR+KEN+DGTV+KYKARLVAKGFHQ  G D++ETFSPVVKPVTIR+ILT
Sbjct: 61   PNKTAIGCKWVFRIKENSDGTVNKYKARLVAKGFHQQFGSDYNETFSPVVKPVTIRLILT 120

Query: 565  LALTYSWPIHQLDVNNAFLNGIINEEVYMQQPSGFIASDPTLVCKLHKSLYGLKQALRQW 744
            LALT+ W I QLDVNNAFLNG + EEVYM QP GF +SD TLVCKLHK++YGLKQA R W
Sbjct: 121  LALTHHWSIQQLDVNNAFLNGNLQEEVYMSQPPGFESSDKTLVCKLHKAIYGLKQAPRAW 180

Query: 745  FEKLTGTSLTLGFKSSKCDPSLFIFRAKSSIAYLLVYVDDIILTGNSPSLLKIITSKLHQ 924
            F+KL  T   L F+ SKCDPSLF++   +++ Y+LVYVDDII+TGN+ S L+ I ++L+ 
Sbjct: 181  FDKLKTTLFQLNFQISKCDPSLFVYSHDNNVIYILVYVDDIIITGNNSSTLQNIIAQLNS 240

Query: 925  NFALKELGDLEYFLGIEVHKQANGSLLLTQSKYIRDLLAKTGMQESAAIASPMASSTKLS 1104
             F+LK+LG L++FLGIEV    +GSL LTQSKYIRDLL +T M+ S  I+SPM S  KLS
Sbjct: 241  AFSLKDLGRLDFFLGIEVKSNTDGSLTLTQSKYIRDLLNRTNMENSNPISSPMVSGCKLS 300

Query: 1105 KMGSLQFKDPTFYRSVVGALQYATLTRPELSYSVNKVCQFMADPLDTHWAAVKRILRYLK 1284
            + GS +F D T YRSVVGALQYAT+TRPE+S+SVNKVCQFM++PL+ HW+AVKRILRYLK
Sbjct: 301  RTGSEKFLDVTLYRSVVGALQYATITRPEISFSVNKVCQFMSNPLEQHWSAVKRILRYLK 360

Query: 1285 GTIHHGLVFNAANKQKPFTLAGFCDADWASDPDDRRSTSGSAIYFGPNLVSWWSRKQPLV 1464
            GT+  GL    A    P ++  +CDADWASDPDDRRSTSG++I+ GPNL+SWWS+KQ +V
Sbjct: 361  GTMFLGLHLQPAPSNSPLSIRAYCDADWASDPDDRRSTSGASIFVGPNLISWWSKKQTVV 420

Query: 1465 ARSSAEAEHRSLAHTTSEILWIQTLLSELHVKTTHPIIHCDNQST 1599
            ARSSAEAE+RSLA  T+E+LWIQTLLSELHV    P+++CDN ST
Sbjct: 421  ARSSAEAEYRSLALATAEVLWIQTLLSELHVSHHTPVVYCDNMST 465


>gb|PNX77046.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 515

 Score =  628 bits (1619), Expect = 0.0
 Identities = 304/492 (61%), Positives = 381/492 (77%), Gaps = 1/492 (0%)
 Frame = +1

Query: 70   INQTPHPTINSPEHTIPSTLPTVTLPTNQP-NSATTTNTQPHNTHAMQTRSKSGITLPRL 246
            +N+      NSP    P+  P++T  TN+  NS   T    HN H+M TR+K+G     L
Sbjct: 30   VNKNTEHHSNSPITNSPANSPSLT--TNKTHNSLPPTIISHHNDHSMITRAKTG----HL 83

Query: 247  NPSVFLTTSEPTTTKQALKDPNWLAAMQAEYTALQNNKTWSLVPLPPNRKAIGCKWVFRV 426
             P  F T  EPTT K AL DP WL AMQ E+ AL +N TWSLVPLPP++KAIGCKW+FR+
Sbjct: 84   KPKAFTTIFEPTTVKSALADPQWLQAMQTEFKALTDNNTWSLVPLPPHKKAIGCKWIFRI 143

Query: 427  KENADGTVSKYKARLVAKGFHQVQGFDFHETFSPVVKPVTIRVILTLALTYSWPIHQLDV 606
            KEN DGT++KYKARLVAKGF Q  GFDF ETFSPV+KPVTIR+ILTLA+TY WP+ Q+D+
Sbjct: 144  KENPDGTINKYKARLVAKGFLQTPGFDFTETFSPVIKPVTIRIILTLAVTYKWPVQQIDI 203

Query: 607  NNAFLNGIINEEVYMQQPSGFIASDPTLVCKLHKSLYGLKQALRQWFEKLTGTSLTLGFK 786
            NNAFLNGI++EEVYM QP+GF +SD +LVCKLHKSLYGLKQA R W+E+LT T L +GF 
Sbjct: 204  NNAFLNGILHEEVYMTQPTGFESSDKSLVCKLHKSLYGLKQAPRAWYERLTQTLLQMGFI 263

Query: 787  SSKCDPSLFIFRAKSSIAYLLVYVDDIILTGNSPSLLKIITSKLHQNFALKELGDLEYFL 966
            +SKCDPSL +   + +  Y+L+YVDDI++TG++P L++ +  KL+   ALK+LG+++YFL
Sbjct: 264  ASKCDPSLMVLHQQGACTYVLIYVDDILITGSAPHLIQDVIQKLNFKLALKQLGEVDYFL 323

Query: 967  GIEVHKQANGSLLLTQSKYIRDLLAKTGMQESAAIASPMASSTKLSKMGSLQFKDPTFYR 1146
            GIEVHK A+G L+L QSKYIRDLL KT M     I SPM +S +LS+ G+    DP+ YR
Sbjct: 324  GIEVHKTASGGLILNQSKYIRDLLCKTTMDNCKPIGSPMVNSCRLSRFGTDAMSDPSLYR 383

Query: 1147 SVVGALQYATLTRPELSYSVNKVCQFMADPLDTHWAAVKRILRYLKGTIHHGLVFNAANK 1326
            S VGALQYATLTRP++S+SVNKVCQF+A PL++HW AVKRILRYLKGT++HGL+ + +  
Sbjct: 384  STVGALQYATLTRPDISFSVNKVCQFIAHPLESHWKAVKRILRYLKGTVNHGLLLHPSPS 443

Query: 1327 QKPFTLAGFCDADWASDPDDRRSTSGSAIYFGPNLVSWWSRKQPLVARSSAEAEHRSLAH 1506
              PF+L  + DADWA+D DDRRSTSGS IYFG NLVSW S+KQPLVARSS EAE+RS+A+
Sbjct: 444  SPPFSLRAYSDADWATDQDDRRSTSGSCIYFGSNLVSWGSKKQPLVARSSTEAEYRSMAN 503

Query: 1507 TTSEILWIQTLL 1542
            TT+E+LWIQ+LL
Sbjct: 504  TTAELLWIQSLL 515


>gb|PNY08092.1| histone deacetylase [Trifolium pratense]
          Length = 1339

 Score =  655 bits (1689), Expect = 0.0
 Identities = 329/525 (62%), Positives = 399/525 (76%), Gaps = 17/525 (3%)
 Frame = +1

Query: 73   NQTPHPTINSPEHTIPSTLPTVTLP---TNQPNSATTTNTQ--------------PHNTH 201
            N T +P+  + +   P++ PT T     T  P+S TTTNT               P NTH
Sbjct: 747  NDTSNPSPLTVQTQNPTSSPTQTTQADITTLPSSPTTTNTTTTTVSLTNKNNTIIPINTH 806

Query: 202  AMQTRSKSGITLPRLNPSVFLTTSEPTTTKQALKDPNWLAAMQAEYTALQNNKTWSLVPL 381
             M TR+KSGIT+P  NP + LT +EP T KQAL DP W +AM+ E+ AL  N TW+LV L
Sbjct: 807  PMHTRAKSGITVP--NPRLLLTHTEPKTVKQALLDPKWHSAMKEEFEALHKNNTWTLVAL 864

Query: 382  PPNRKAIGCKWVFRVKENADGTVSKYKARLVAKGFHQVQGFDFHETFSPVVKPVTIRVIL 561
            PPNRKAIGCKWVFR KEN DG+++K KARLVAKGFHQ+QGFDF+ETFSPV+KP+TIR+IL
Sbjct: 865  PPNRKAIGCKWVFRTKENPDGSINKLKARLVAKGFHQLQGFDFNETFSPVIKPITIRLIL 924

Query: 562  TLALTYSWPIHQLDVNNAFLNGIINEEVYMQQPSGFIASDPTLVCKLHKSLYGLKQALRQ 741
            +LA++Y WP+ QLDVNNAFLNG ++EEVYM QP GF  SD +LVCKL+K+LYGLKQA RQ
Sbjct: 925  SLAISYKWPLKQLDVNNAFLNGSLDEEVYMVQPQGFEVSDSSLVCKLNKALYGLKQAPRQ 984

Query: 742  WFEKLTGTSLTLGFKSSKCDPSLFIFRAKSSIAYLLVYVDDIILTGNSPSLLKIITSKLH 921
            WF+KLT T L  GFK+SKCDPSLF +     + YLLVYVDDII+TG+S +L++ +  KL 
Sbjct: 985  WFDKLTTTLLQFGFKASKCDPSLFTYSKDRQVVYLLVYVDDIIITGSSITLVQTLVEKLD 1044

Query: 922  QNFALKELGDLEYFLGIEVHKQANGSLLLTQSKYIRDLLAKTGMQESAAIASPMASSTKL 1101
              F+LK+LG+L+YFLGIEV + ++ SLLLTQSKYI+DLL KT M E   IA+PM SS KL
Sbjct: 1045 SVFSLKQLGNLDYFLGIEVQQLSDNSLLLTQSKYIKDLLVKTNMLECKPIATPMMSSCKL 1104

Query: 1102 SKMGSLQFKDPTFYRSVVGALQYATLTRPELSYSVNKVCQFMADPLDTHWAAVKRILRYL 1281
            SK+GS    D T YRSVVG+LQYAT+TRPE+S++VNKVCQFM+ PL+THW AVKRILRYL
Sbjct: 1105 SKVGSNTVADTTLYRSVVGSLQYATITRPEISFAVNKVCQFMSAPLETHWIAVKRILRYL 1164

Query: 1282 KGTIHHGLVFNAANKQKPFTLAGFCDADWASDPDDRRSTSGSAIYFGPNLVSWWSRKQPL 1461
            KGTI  GL     +   P  L  FCDADWASDPDDRRSTSG+AI+FGPNL+SWWSRKQ +
Sbjct: 1165 KGTIDQGLKLLPTDIHHPLPLRVFCDADWASDPDDRRSTSGAAIFFGPNLISWWSRKQQV 1224

Query: 1462 VARSSAEAEHRSLAHTTSEILWIQTLLSELHVKTTHPIIHCDNQS 1596
            VARSS EAE+RSLA  T++ LW+QTLL EL V    P+I+CDNQS
Sbjct: 1225 VARSSTEAEYRSLAQATADALWVQTLLKELTVPFLAPVIYCDNQS 1269


>gb|PNY12955.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 535

 Score =  625 bits (1612), Expect = 0.0
 Identities = 302/464 (65%), Positives = 366/464 (78%)
 Frame = +1

Query: 205  MQTRSKSGITLPRLNPSVFLTTSEPTTTKQALKDPNWLAAMQAEYTALQNNKTWSLVPLP 384
            M TR K+G     L P VF  + EPTT K AL DP WL AMQ EY AL +N TWSLVPLP
Sbjct: 1    MVTRGKTG----NLKPKVFTVSLEPTTIKAALTDPKWLHAMQNEYKALMDNNTWSLVPLP 56

Query: 385  PNRKAIGCKWVFRVKENADGTVSKYKARLVAKGFHQVQGFDFHETFSPVVKPVTIRVILT 564
            P++KAIGCKW+FRVKEN+DGTV+K+KARLVAKGF Q  GFDF ETFSPV+KP+TIRVILT
Sbjct: 57   PHKKAIGCKWIFRVKENSDGTVNKFKARLVAKGFLQTPGFDFTETFSPVIKPITIRVILT 116

Query: 565  LALTYSWPIHQLDVNNAFLNGIINEEVYMQQPSGFIASDPTLVCKLHKSLYGLKQALRQW 744
            LA+TY WP+ Q+DVNNAFLNG + EEVYM+QP+GF +SD +LVCKLHKSLYGLKQA R W
Sbjct: 117  LAVTYKWPVQQIDVNNAFLNGWLQEEVYMKQPAGFESSDKSLVCKLHKSLYGLKQAPRAW 176

Query: 745  FEKLTGTSLTLGFKSSKCDPSLFIFRAKSSIAYLLVYVDDIILTGNSPSLLKIITSKLHQ 924
            +E+LT   L +GF +SKCDPSL I   + +  Y+L+YVDDI++TG++P L+K +  KL+ 
Sbjct: 177  YERLTQALLQMGFVTSKCDPSLLIHYQQGACTYVLIYVDDILITGSAPHLIKDLIHKLNS 236

Query: 925  NFALKELGDLEYFLGIEVHKQANGSLLLTQSKYIRDLLAKTGMQESAAIASPMASSTKLS 1104
             FALK+LG+++YFLGIEVH   +G LLL QSKYIRDLL +T M+    I SPM SS +LS
Sbjct: 237  QFALKQLGEVDYFLGIEVHHMPSGGLLLNQSKYIRDLLCRTNMENCKPIGSPMVSSCRLS 296

Query: 1105 KMGSLQFKDPTFYRSVVGALQYATLTRPELSYSVNKVCQFMADPLDTHWAAVKRILRYLK 1284
            K G+    DP+ YRS VGALQYATLTRP++++SVNKVCQFMA PL+THW AVKRILRYLK
Sbjct: 297  KFGTDAMSDPSLYRSTVGALQYATLTRPDIAFSVNKVCQFMAHPLETHWKAVKRILRYLK 356

Query: 1285 GTIHHGLVFNAANKQKPFTLAGFCDADWASDPDDRRSTSGSAIYFGPNLVSWWSRKQPLV 1464
            GT  HGL+ N +    PF+L  + DADWA+D DDRRSTSGS IYFGPNL+SW S+KQ LV
Sbjct: 357  GTTTHGLLLNPSPSGPPFSLRAYSDADWATDQDDRRSTSGSCIYFGPNLISWGSKKQQLV 416

Query: 1465 ARSSAEAEHRSLAHTTSEILWIQTLLSELHVKTTHPIIHCDNQS 1596
            ARSS EAE+RS+A+TT+++LWIQ+LL ELHV    P + CDN S
Sbjct: 417  ARSSTEAEYRSMANTTADLLWIQSLLRELHVSCHTPTLLCDNLS 460


>gb|KYP46114.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 539

 Score =  622 bits (1605), Expect = 0.0
 Identities = 305/464 (65%), Positives = 367/464 (79%)
 Frame = +1

Query: 205  MQTRSKSGITLPRLNPSVFLTTSEPTTTKQALKDPNWLAAMQAEYTALQNNKTWSLVPLP 384
            MQTRSKSG   PR++PS+FL  SEP T KQAL DPNW +AMQ EY AL  N TW LV LP
Sbjct: 1    MQTRSKSGFHNPRIHPSLFLAHSEPKTVKQALADPNWFSAMQQEYNALMLNHTWDLVSLP 60

Query: 385  PNRKAIGCKWVFRVKENADGTVSKYKARLVAKGFHQVQGFDFHETFSPVVKPVTIRVILT 564
             +RKA+GCKWVFRVKENADG++ K KARLVAKGFHQV GFDFHETFSPV+KP+TIR+ILT
Sbjct: 61   SDRKAVGCKWVFRVKENADGSIDKLKARLVAKGFHQVHGFDFHETFSPVIKPITIRIILT 120

Query: 565  LALTYSWPIHQLDVNNAFLNGIINEEVYMQQPSGFIASDPTLVCKLHKSLYGLKQALRQW 744
            LALT +W + QLDVNNAFLNG + E +YM QP GF A D +LVCKL+K+LYGLKQA RQW
Sbjct: 121  LALTNNWNLFQLDVNNAFLNGTLEETIYMVQPPGFEAGDKSLVCKLNKALYGLKQAPRQW 180

Query: 745  FEKLTGTSLTLGFKSSKCDPSLFIFRAKSSIAYLLVYVDDIILTGNSPSLLKIITSKLHQ 924
            F KL  T    GF++SKCDPSLF ++ ++   ++LVYVDDII+TG+S  L++ IT++L  
Sbjct: 181  FNKLKLTLTRFGFQASKCDPSLFQYQHQTHTIFILVYVDDIIITGSSSLLIQQITNQLDS 240

Query: 925  NFALKELGDLEYFLGIEVHKQANGSLLLTQSKYIRDLLAKTGMQESAAIASPMASSTKLS 1104
             F+LK+LG L+YFLGIEV    + SL+LTQSKYIRDLL KT + E+    SPM S+ KLS
Sbjct: 241  IFSLKQLGSLDYFLGIEVKHLPDKSLVLTQSKYIRDLLFKTNLAEAHGAPSPMFSNCKLS 300

Query: 1105 KMGSLQFKDPTFYRSVVGALQYATLTRPELSYSVNKVCQFMADPLDTHWAAVKRILRYLK 1284
            + G+  F DPTF+RSVVGALQYATLTRPE+S++VNKVCQFMA PLD+HW AVKRIL+YLK
Sbjct: 301  RSGNDFFHDPTFFRSVVGALQYATLTRPEISFAVNKVCQFMATPLDSHWVAVKRILKYLK 360

Query: 1285 GTIHHGLVFNAANKQKPFTLAGFCDADWASDPDDRRSTSGSAIYFGPNLVSWWSRKQPLV 1464
            GT+ +GL    A    P +L  FCDADWASD DDRRSTSGSAI+FGPNL+SWWSRKQ ++
Sbjct: 361  GTLSYGLHMQPAAVNGPISLTAFCDADWASDIDDRRSTSGSAIFFGPNLISWWSRKQRVI 420

Query: 1465 ARSSAEAEHRSLAHTTSEILWIQTLLSELHVKTTHPIIHCDNQS 1596
            ARSS EAE+RS+A  ++E+ WIQ LL EL V  + P + CDNQS
Sbjct: 421  ARSSTEAEYRSIAQASAELTWIQALLQELKVPFSTPTLLCDNQS 464


>gb|KYP67571.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 482

 Score =  619 bits (1597), Expect = 0.0
 Identities = 299/464 (64%), Positives = 366/464 (78%)
 Frame = +1

Query: 205  MQTRSKSGITLPRLNPSVFLTTSEPTTTKQALKDPNWLAAMQAEYTALQNNKTWSLVPLP 384
            M TR+K GI  PRL P++ LT +EP TT+QAL D  W AAMQAE+  L +N TWSLVPLP
Sbjct: 1    MVTRAKDGIVKPRLQPTLLLTRTEPKTTRQALSDSTWFAAMQAEHNTLLHNGTWSLVPLP 60

Query: 385  PNRKAIGCKWVFRVKENADGTVSKYKARLVAKGFHQVQGFDFHETFSPVVKPVTIRVILT 564
            PNR  IGCKWVFRVKEN D TV KYKARLVAKGFHQ  G+D++ETFSPV+KPVT+R+ILT
Sbjct: 61   PNRTPIGCKWVFRVKENLDATVHKYKARLVAKGFHQQFGYDYNETFSPVIKPVTVRLILT 120

Query: 565  LALTYSWPIHQLDVNNAFLNGIINEEVYMQQPSGFIASDPTLVCKLHKSLYGLKQALRQW 744
            L LT+ WP+ QLDVNNAFLNG + EEVYM QP+GF +SD TLVC+LHK++YGLKQA R W
Sbjct: 121  LVLTHRWPLKQLDVNNAFLNGTLAEEVYMTQPTGFESSDKTLVCRLHKAIYGLKQAPRAW 180

Query: 745  FEKLTGTSLTLGFKSSKCDPSLFIFRAKSSIAYLLVYVDDIILTGNSPSLLKIITSKLHQ 924
            FEKL  T L   F++SKCDPSLF++   ++I Y+LVYVDDII+TGN+  +L+ + S+LH 
Sbjct: 181  FEKLKSTLLQFHFQASKCDPSLFVYSVDNNIIYVLVYVDDIIITGNNSIVLQSLVSRLHS 240

Query: 925  NFALKELGDLEYFLGIEVHKQANGSLLLTQSKYIRDLLAKTGMQESAAIASPMASSTKLS 1104
             F+LK+L DL+YFLGIEV  Q++GSL+LTQSKYIR+LL +T M+ S  I+SPM S  KLS
Sbjct: 241  AFSLKDLRDLDYFLGIEVKNQSDGSLILTQSKYIRNLLNRTDMEASKPISSPMVSGCKLS 300

Query: 1105 KMGSLQFKDPTFYRSVVGALQYATLTRPELSYSVNKVCQFMADPLDTHWAAVKRILRYLK 1284
            K+ S +F D + YRSVVGALQYAT+ RPE+S+SVNKVCQFM+ PL+ HW  VKRILRYLK
Sbjct: 301  KIRSEKFPDASLYRSVVGALQYATIIRPEISFSVNKVCQFMSQPLEQHWIVVKRILRYLK 360

Query: 1285 GTIHHGLVFNAANKQKPFTLAGFCDADWASDPDDRRSTSGSAIYFGPNLVSWWSRKQPLV 1464
            G I  GL    +      ++  +CDADWASDPDDRRSTSG++I+ GPNLVSWWS+KQ +V
Sbjct: 361  GIISWGLRLQPSPSTSSLSIQAYCDADWASDPDDRRSTSGASIFLGPNLVSWWSKKQNVV 420

Query: 1465 ARSSAEAEHRSLAHTTSEILWIQTLLSELHVKTTHPIIHCDNQS 1596
            A SS EAE+RSLA   +E++WIQTLLSEL V  + P+I CDN S
Sbjct: 421  ACSSTEAEYRSLALAAAEVMWIQTLLSELRVNHSPPVIFCDNMS 464


>gb|KYP67562.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 482

 Score =  618 bits (1593), Expect = 0.0
 Identities = 299/464 (64%), Positives = 365/464 (78%)
 Frame = +1

Query: 205  MQTRSKSGITLPRLNPSVFLTTSEPTTTKQALKDPNWLAAMQAEYTALQNNKTWSLVPLP 384
            M TR+K GI  PRL P++ LT +EP TT+QAL D  W AAMQAE+  L +N TWSLVPLP
Sbjct: 1    MVTRAKDGIVKPRLQPTLLLTRTEPKTTRQALSDSTWFAAMQAEHNTLLHNGTWSLVPLP 60

Query: 385  PNRKAIGCKWVFRVKENADGTVSKYKARLVAKGFHQVQGFDFHETFSPVVKPVTIRVILT 564
            PNR  IGCKWVFRVKEN D TV KYKARLVAKGFHQ  G+D++ETFSPV+KPVT R+ILT
Sbjct: 61   PNRTPIGCKWVFRVKENLDATVHKYKARLVAKGFHQQFGYDYNETFSPVIKPVTARLILT 120

Query: 565  LALTYSWPIHQLDVNNAFLNGIINEEVYMQQPSGFIASDPTLVCKLHKSLYGLKQALRQW 744
            L LT+ WP+ QLDVNNAFLNG + EEVYM QP+GF +SD TLVC+LHK++YGLKQA R W
Sbjct: 121  LVLTHRWPLKQLDVNNAFLNGTLAEEVYMTQPTGFESSDKTLVCRLHKAIYGLKQAPRAW 180

Query: 745  FEKLTGTSLTLGFKSSKCDPSLFIFRAKSSIAYLLVYVDDIILTGNSPSLLKIITSKLHQ 924
            FEKL  T L   F++SKCDPSLF++   ++I Y+LVYVDDII+TGN+  +L+ + S+LH 
Sbjct: 181  FEKLKSTLLQFHFQASKCDPSLFVYSVDNNIIYVLVYVDDIIITGNNSIVLQSLVSRLHS 240

Query: 925  NFALKELGDLEYFLGIEVHKQANGSLLLTQSKYIRDLLAKTGMQESAAIASPMASSTKLS 1104
             F+LK+L DL+YFLGIEV  Q++GSL+LTQSKYIR+LL +T M+ S  I+SPM S  KLS
Sbjct: 241  AFSLKDLRDLDYFLGIEVKNQSDGSLILTQSKYIRNLLNRTDMEASKPISSPMVSGCKLS 300

Query: 1105 KMGSLQFKDPTFYRSVVGALQYATLTRPELSYSVNKVCQFMADPLDTHWAAVKRILRYLK 1284
            K+ S +F D + YRSVVGALQYAT+ RPE+S+SVNKVCQFM+ PL+ HW  VKRILRYLK
Sbjct: 301  KIRSEKFPDASLYRSVVGALQYATIIRPEISFSVNKVCQFMSQPLEQHWIVVKRILRYLK 360

Query: 1285 GTIHHGLVFNAANKQKPFTLAGFCDADWASDPDDRRSTSGSAIYFGPNLVSWWSRKQPLV 1464
            G I  GL    +      ++  +CDADWASDPDDRRSTSG++I+ GPNLVSWWS+KQ +V
Sbjct: 361  GIISWGLRLQPSPSTSSLSIQAYCDADWASDPDDRRSTSGASIFLGPNLVSWWSKKQNVV 420

Query: 1465 ARSSAEAEHRSLAHTTSEILWIQTLLSELHVKTTHPIIHCDNQS 1596
            A SS EAE+RSLA   +E++WIQTLLSEL V  + P+I CDN S
Sbjct: 421  ACSSTEAEYRSLALAAAEVMWIQTLLSELRVNHSPPVIFCDNMS 464


>gb|PNX91972.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1516

 Score =  651 bits (1679), Expect = 0.0
 Identities = 320/513 (62%), Positives = 392/513 (76%), Gaps = 8/513 (1%)
 Frame = +1

Query: 82   PHPTINSPEHTIPSTL--PTVTLPTNQPNSAT------TTNTQPHNTHAMQTRSKSGITL 237
            P+PT+  P  +   T   P+ T  T   +S T      T  + P N H MQTR+KSGI +
Sbjct: 929  PNPTLTQPTDSNTKTPHNPSSTSITTHSDSPTQSSPSPTIPSLPTNNHRMQTRAKSGI-I 987

Query: 238  PRLNPSVFLTTSEPTTTKQALKDPNWLAAMQAEYTALQNNKTWSLVPLPPNRKAIGCKWV 417
            PR+NP + LT +EP T KQAL+DP WL AM  E+ AL+ N TW+LVPLP +R AIGCKWV
Sbjct: 988  PRINPKLLLTHTEPRTVKQALQDPKWLTAMTEEFEALKRNHTWTLVPLPKHRSAIGCKWV 1047

Query: 418  FRVKENADGTVSKYKARLVAKGFHQVQGFDFHETFSPVVKPVTIRVILTLALTYSWPIHQ 597
            FR KEN DGT++KYKARLVAKGFHQ+QGFDF+ETFSPV+KP+TIR+IL+LA++Y WP+ Q
Sbjct: 1048 FRTKENPDGTINKYKARLVAKGFHQIQGFDFNETFSPVIKPITIRLILSLAVSYKWPLKQ 1107

Query: 598  LDVNNAFLNGIINEEVYMQQPSGFIASDPTLVCKLHKSLYGLKQALRQWFEKLTGTSLTL 777
            LDVNNAFLNG++ EEVYM QP GF  +D  LVCKL+K+LYGLKQA RQWF++LT T L  
Sbjct: 1108 LDVNNAFLNGLLEEEVYMIQPPGFEEADENLVCKLNKALYGLKQAPRQWFDRLTTTLLQF 1167

Query: 778  GFKSSKCDPSLFIFRAKSSIAYLLVYVDDIILTGNSPSLLKIITSKLHQNFALKELGDLE 957
            GFK+SKCDPSLF +     + YLLVYVDDII+TG+S +L++ +  KL   F+LK+LGDLE
Sbjct: 1168 GFKASKCDPSLFTYSQNKQVVYLLVYVDDIIITGSSSTLVQTLVQKLDSIFSLKQLGDLE 1227

Query: 958  YFLGIEVHKQANGSLLLTQSKYIRDLLAKTGMQESAAIASPMASSTKLSKMGSLQFKDPT 1137
            YFLGIEV +  + SLLLTQ KYI+DLL KT M +   I +PM SS KLSK+GS    D T
Sbjct: 1228 YFLGIEVKRSPDSSLLLTQGKYIKDLLLKTNMLDCKPINTPMMSSCKLSKVGSTGMTDAT 1287

Query: 1138 FYRSVVGALQYATLTRPELSYSVNKVCQFMADPLDTHWAAVKRILRYLKGTIHHGLVFNA 1317
             YRSVVG+LQYAT+TRPE+S++VNKVCQFM+ PL+THW AVKRILRYLKGTI  GL  + 
Sbjct: 1288 LYRSVVGSLQYATITRPEISFAVNKVCQFMSAPLETHWIAVKRILRYLKGTIDFGLKISP 1347

Query: 1318 ANKQKPFTLAGFCDADWASDPDDRRSTSGSAIYFGPNLVSWWSRKQPLVARSSAEAEHRS 1497
                 P  L  FCDADWA+DPDDRRSTSG+A++FGPNL+SWWSRKQ +VARSS EAE+RS
Sbjct: 1348 TPVHHPLPLNVFCDADWAADPDDRRSTSGAALFFGPNLISWWSRKQQVVARSSTEAEYRS 1407

Query: 1498 LAHTTSEILWIQTLLSELHVKTTHPIIHCDNQS 1596
            LA  T++ LW+QTLL EL V  T P+++CDN S
Sbjct: 1408 LAQATADTLWVQTLLKELTVPFTAPVVYCDNLS 1440


>gb|PNX84939.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 499

 Score =  616 bits (1589), Expect = 0.0
 Identities = 294/461 (63%), Positives = 365/461 (79%)
 Frame = +1

Query: 160  NSATTTNTQPHNTHAMQTRSKSGITLPRLNPSVFLTTSEPTTTKQALKDPNWLAAMQAEY 339
            NS   T    HN H+M TR+K+G     L    F T  EPTT K AL DP WL AMQ E+
Sbjct: 43   NSLPPTIISHHNYHSMITRAKTG----HLKLKAFTTIFEPTTVKSALADPQWLQAMQTEF 98

Query: 340  TALQNNKTWSLVPLPPNRKAIGCKWVFRVKENADGTVSKYKARLVAKGFHQVQGFDFHET 519
             AL +N TWSLVPLPP++KAIGCKW+FR+KEN DGT++KYKARLVAKGF Q  GFDF ET
Sbjct: 99   KALTDNNTWSLVPLPPHKKAIGCKWIFRIKENPDGTINKYKARLVAKGFLQTPGFDFTET 158

Query: 520  FSPVVKPVTIRVILTLALTYSWPIHQLDVNNAFLNGIINEEVYMQQPSGFIASDPTLVCK 699
            FSPV+KPVTIR+ILTLA+TY WP+ Q+D+NNAFLNGI++EEVYM QP+GF +SD +LVCK
Sbjct: 159  FSPVIKPVTIRIILTLAVTYKWPVQQIDINNAFLNGILHEEVYMTQPTGFESSDKSLVCK 218

Query: 700  LHKSLYGLKQALRQWFEKLTGTSLTLGFKSSKCDPSLFIFRAKSSIAYLLVYVDDIILTG 879
            LHKSLYGLKQA R W+E+LT T L +GF +SKCDPSL +   + +  Y+L+YVDDI++TG
Sbjct: 219  LHKSLYGLKQAPRAWYERLTQTLLQMGFIASKCDPSLMVLHQQGACTYVLIYVDDILITG 278

Query: 880  NSPSLLKIITSKLHQNFALKELGDLEYFLGIEVHKQANGSLLLTQSKYIRDLLAKTGMQE 1059
            ++P L++ +  KL+   ALK+LG+++YFLGIEVHK A+G L+L QSKYIRDLL KT M  
Sbjct: 279  SAPHLIQDVIQKLNFKLALKQLGEVDYFLGIEVHKTASGGLILNQSKYIRDLLCKTTMDN 338

Query: 1060 SAAIASPMASSTKLSKMGSLQFKDPTFYRSVVGALQYATLTRPELSYSVNKVCQFMADPL 1239
               I SPM +S +LS+ G+    DP+ YRS VGALQYATLTRP++S+SVNKVCQF+A PL
Sbjct: 339  CKPIGSPMVNSCRLSRFGTDAMSDPSLYRSTVGALQYATLTRPDISFSVNKVCQFIAHPL 398

Query: 1240 DTHWAAVKRILRYLKGTIHHGLVFNAANKQKPFTLAGFCDADWASDPDDRRSTSGSAIYF 1419
            ++HW AVKRILRYLKGT++HGL+ + +    PF+L  + DADWA+D DDRRSTSGS IYF
Sbjct: 399  ESHWKAVKRILRYLKGTVNHGLLLHPSPSSPPFSLRAYSDADWATDQDDRRSTSGSCIYF 458

Query: 1420 GPNLVSWWSRKQPLVARSSAEAEHRSLAHTTSEILWIQTLL 1542
            G NLVSW S+KQPLVARSS EAE+RS+A+TT+E+LWIQ+LL
Sbjct: 459  GSNLVSWGSKKQPLVARSSTEAEYRSMANTTAELLWIQSLL 499


>gb|KYP32233.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 537

 Score =  613 bits (1580), Expect = 0.0
 Identities = 304/465 (65%), Positives = 364/465 (78%)
 Frame = +1

Query: 205  MQTRSKSGITLPRLNPSVFLTTSEPTTTKQALKDPNWLAAMQAEYTALQNNKTWSLVPLP 384
            M TR+K GI  PRL P++ LT  EP TTKQAL +P W AAMQ EY AL +N TWSLVPLP
Sbjct: 1    MTTRAKDGIVKPRLQPTLLLTHVEPKTTKQALSNPTWTAAMQTEYNALLHNGTWSLVPLP 60

Query: 385  PNRKAIGCKWVFRVKENADGTVSKYKARLVAKGFHQVQGFDFHETFSPVVKPVTIRVILT 564
            P+R AIGCKWVFRVKEN +GTV KYKA LVAKGF+Q  GFD+HETFSPV+KPVT+R+ILT
Sbjct: 61   PHRTAIGCKWVFRVKENPNGTVQKYKACLVAKGFNQQFGFDYHETFSPVIKPVTVRLILT 120

Query: 565  LALTYSWPIHQLDVNNAFLNGIINEEVYMQQPSGFIASDPTLVCKLHKSLYGLKQALRQW 744
            LALT+ WPI QLDVNNAFLNG + EEVYM QP GF ASD  LVCKLHK++YGLKQA R W
Sbjct: 121  LALTHHWPIQQLDVNNAFLNGTLEEEVYMTQPPGFEASDKCLVCKLHKAIYGLKQAPRAW 180

Query: 745  FEKLTGTSLTLGFKSSKCDPSLFIFRAKSSIAYLLVYVDDIILTGNSPSLLKIITSKLHQ 924
            FEKL  T L   F++SKCDPSLF++   +++ Y+LVYVDDII+T N+ S+L  + S+LH 
Sbjct: 181  FEKLKSTLLQFHFQASKCDPSLFVYSHANNVIYILVYVDDIIITSNNSSILHTLVSQLHS 240

Query: 925  NFALKELGDLEYFLGIEVHKQANGSLLLTQSKYIRDLLAKTGMQESAAIASPMASSTKLS 1104
             F+LK+LGDL+YFLGIEV  Q++GSL+LTQSKYIRDLL +T M+    I+SPM   +KLS
Sbjct: 241  VFSLKDLGDLDYFLGIEVKTQSDGSLILTQSKYIRDLLNRTDMEALKPISSPMIPDSKLS 300

Query: 1105 KMGSLQFKDPTFYRSVVGALQYATLTRPELSYSVNKVCQFMADPLDTHWAAVKRILRYLK 1284
            K GS  F D + YRSVVGALQYAT+TR E+S+SVNKVCQFM+ PL  H +AVKRILRYLK
Sbjct: 301  KAGSEDFLDASLYRSVVGALQYATITRLEISFSVNKVCQFMSYPLAHHCSAVKRILRYLK 360

Query: 1285 GTIHHGLVFNAANKQKPFTLAGFCDADWASDPDDRRSTSGSAIYFGPNLVSWWSRKQPLV 1464
            GT   GL    A+     ++  +CDADWASD DDRRST G++I+  PNLVSWWS+K+ +V
Sbjct: 361  GTTSWGLHLQPASSSSSLSIHAYCDADWASDLDDRRSTFGASIFLRPNLVSWWSKKKTVV 420

Query: 1465 ARSSAEAEHRSLAHTTSEILWIQTLLSELHVKTTHPIIHCDNQST 1599
            ARSS +AE+RSLA  T+E+ WIQTLLSEL V  + PII CDN ST
Sbjct: 421  ARSSTKAEYRSLALATTEVTWIQTLLSELKVNHSTPIIFCDNLST 465


>gb|KYP67039.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1279

 Score =  638 bits (1645), Expect = 0.0
 Identities = 315/505 (62%), Positives = 388/505 (76%), Gaps = 2/505 (0%)
 Frame = +1

Query: 88   PTINSPEHTIPSTLPTVTLPTNQPNSATTTNTQPH--NTHAMQTRSKSGITLPRLNPSVF 261
            P+++S ++  PS+  + +   + P S+T   + P   N H MQTRSKSG   PR++PS+F
Sbjct: 700  PSVSSSQNVSPSSPESSSQNVSSPTSSTAPASIPRTINNHPMQTRSKSGFHNPRIHPSLF 759

Query: 262  LTTSEPTTTKQALKDPNWLAAMQAEYTALQNNKTWSLVPLPPNRKAIGCKWVFRVKENAD 441
            L  SEP T KQAL DPNW +AMQ EY AL  N TW LV LP +RKA+GCKWVFRVKENAD
Sbjct: 760  LAHSEPKTVKQALADPNWFSAMQQEYNALMLNHTWDLVSLPSDRKAVGCKWVFRVKENAD 819

Query: 442  GTVSKYKARLVAKGFHQVQGFDFHETFSPVVKPVTIRVILTLALTYSWPIHQLDVNNAFL 621
            G++ K KARLVAKGFHQV GFDFHETFSPV+KP+TIR+ILTLALT +W + QLDVNNAFL
Sbjct: 820  GSIDKLKARLVAKGFHQVHGFDFHETFSPVIKPITIRIILTLALTNNWNLFQLDVNNAFL 879

Query: 622  NGIINEEVYMQQPSGFIASDPTLVCKLHKSLYGLKQALRQWFEKLTGTSLTLGFKSSKCD 801
            NG + E +YM QP GF A D +LVCKL+K+LYGLKQA RQWF KL  T    GF++SKCD
Sbjct: 880  NGTLEETIYMVQPPGFEAGDKSLVCKLNKALYGLKQAPRQWFNKLKLTLTRFGFQASKCD 939

Query: 802  PSLFIFRAKSSIAYLLVYVDDIILTGNSPSLLKIITSKLHQNFALKELGDLEYFLGIEVH 981
            PSLF ++ ++   ++LVYVDDII+TG+S  L++ IT++L   F+LK+LG L+YFLGIEV 
Sbjct: 940  PSLFQYQHQTHTIFILVYVDDIIITGSSSLLIQQITNQLDSIFSLKQLGSLDYFLGIEVK 999

Query: 982  KQANGSLLLTQSKYIRDLLAKTGMQESAAIASPMASSTKLSKMGSLQFKDPTFYRSVVGA 1161
               + SL+LTQSKYIRDLL KT + E+    SPM S+ KLS+ G+  F DPTF+RSVVGA
Sbjct: 1000 HLPDKSLVLTQSKYIRDLLFKTNLAEAHGAPSPMFSNCKLSRSGNDFFHDPTFFRSVVGA 1059

Query: 1162 LQYATLTRPELSYSVNKVCQFMADPLDTHWAAVKRILRYLKGTIHHGLVFNAANKQKPFT 1341
            LQYATLTRPE+S++VNKVCQFMA PLD+HW AVKRIL+YLKGT+ +GL    A    P +
Sbjct: 1060 LQYATLTRPEISFAVNKVCQFMATPLDSHWVAVKRILKYLKGTLSYGLHMQPAAVNGPIS 1119

Query: 1342 LAGFCDADWASDPDDRRSTSGSAIYFGPNLVSWWSRKQPLVARSSAEAEHRSLAHTTSEI 1521
            L  FCDADWASD DDRRSTSGSAI+FGPNL+SWWSRKQ ++ARSS EAE+RS+A  ++E+
Sbjct: 1120 LTAFCDADWASDIDDRRSTSGSAIFFGPNLISWWSRKQRVIARSSTEAEYRSIAQASAEL 1179

Query: 1522 LWIQTLLSELHVKTTHPIIHCDNQS 1596
             WIQ LL EL V  + P + CDNQS
Sbjct: 1180 TWIQALLQELKVPFSTPTLLCDNQS 1204


>gb|KYP51570.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 481

 Score =  610 bits (1573), Expect = 0.0
 Identities = 299/465 (64%), Positives = 360/465 (77%)
 Frame = +1

Query: 205  MQTRSKSGITLPRLNPSVFLTTSEPTTTKQALKDPNWLAAMQAEYTALQNNKTWSLVPLP 384
            M TR+K GI  PRL P++ LT  EP T KQAL +  W A MQ EY AL +N TWSLV LP
Sbjct: 1    MTTRAKDGIVKPRLQPTLLLTHVEPKTIKQALSNSTWSAVMQTEYNALLSNDTWSLVHLP 60

Query: 385  PNRKAIGCKWVFRVKENADGTVSKYKARLVAKGFHQVQGFDFHETFSPVVKPVTIRVILT 564
            P+R AIGCKWVF +KEN DGTV KYKARLV KGF+Q  GFD++ETF+PV+K VTIR+ILT
Sbjct: 61   PHRTAIGCKWVFCIKENPDGTVQKYKARLVTKGFNQQFGFDYNETFAPVIKLVTIRLILT 120

Query: 565  LALTYSWPIHQLDVNNAFLNGIINEEVYMQQPSGFIASDPTLVCKLHKSLYGLKQALRQW 744
            LALT+ WP+ QLD+NNAFLNG ++EEVYM QP GF ASD  LVCKLHK++YGLKQA R W
Sbjct: 121  LALTHHWPLQQLDINNAFLNGTLDEEVYMTQPPGFEASDKNLVCKLHKAIYGLKQAPRAW 180

Query: 745  FEKLTGTSLTLGFKSSKCDPSLFIFRAKSSIAYLLVYVDDIILTGNSPSLLKIITSKLHQ 924
            FEKL  T L   F++SKCDPSLF++   +S+ Y+LVYVDDII+T N  +LL  + S+LH 
Sbjct: 181  FEKLKSTLLQFNFQASKCDPSLFVYSHANSVIYILVYVDDIIITSNDSTLLHTLVSQLHS 240

Query: 925  NFALKELGDLEYFLGIEVHKQANGSLLLTQSKYIRDLLAKTGMQESAAIASPMASSTKLS 1104
             F+LK+LGDL+YFLGIEV  Q++GSL+LTQSKYIRDLL  T M+ S   +S M S  KLS
Sbjct: 241  TFSLKDLGDLDYFLGIEVKTQSDGSLILTQSKYIRDLLNHTDMEASKPFSSLMVSGCKLS 300

Query: 1105 KMGSLQFKDPTFYRSVVGALQYATLTRPELSYSVNKVCQFMADPLDTHWAAVKRILRYLK 1284
            K+G+  F D + YRS+VGALQYAT+TRPE+S+SVNKV QFM+ PL  HW+ VK ILRYLK
Sbjct: 301  KVGTEDFLDVSLYRSIVGALQYATITRPEISFSVNKVYQFMSHPLAHHWSTVKHILRYLK 360

Query: 1285 GTIHHGLVFNAANKQKPFTLAGFCDADWASDPDDRRSTSGSAIYFGPNLVSWWSRKQPLV 1464
            GT   GL    A    P ++  +CDADWASDPDDRRSTSG++I+ G NLVSWWS+KQP+V
Sbjct: 361  GTTSWGLHLQPAPSNSPLSIHAYCDADWASDPDDRRSTSGASIFLGTNLVSWWSKKQPVV 420

Query: 1465 ARSSAEAEHRSLAHTTSEILWIQTLLSELHVKTTHPIIHCDNQST 1599
            ARSS EAE+RSLA  T+E+ WIQTLLSEL V+ + PII CDN ST
Sbjct: 421  ARSSTEAEYRSLALATAEVTWIQTLLSELKVRHSPPIIFCDNLST 465


>gb|PNX78102.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 535

 Score =  612 bits (1578), Expect = 0.0
 Identities = 293/464 (63%), Positives = 364/464 (78%)
 Frame = +1

Query: 205  MQTRSKSGITLPRLNPSVFLTTSEPTTTKQALKDPNWLAAMQAEYTALQNNKTWSLVPLP 384
            M TR+K+G     L P  F  +  PT  K AL +P+WL AMQAEY AL +NKTWSLVPLP
Sbjct: 1    MITRTKTG----NLKPKTFTASIAPTNVKSALAEPHWLQAMQAEYKALMDNKTWSLVPLP 56

Query: 385  PNRKAIGCKWVFRVKENADGTVSKYKARLVAKGFHQVQGFDFHETFSPVVKPVTIRVILT 564
            P+RKAIGCKW+FRVKEN DG+++KYKARLVAKGF Q  GFDF ETFSPV+KPVTIR+ILT
Sbjct: 57   PHRKAIGCKWIFRVKENPDGSINKYKARLVAKGFLQTPGFDFTETFSPVIKPVTIRIILT 116

Query: 565  LALTYSWPIHQLDVNNAFLNGIINEEVYMQQPSGFIASDPTLVCKLHKSLYGLKQALRQW 744
            LA+TY W + Q+D+NNAFLNGI+ EEVYM QP GF +SD  LVCKLHK+LYGLKQA R W
Sbjct: 117  LAVTYKWSVQQIDINNAFLNGILQEEVYMTQPPGFESSDKNLVCKLHKALYGLKQAPRAW 176

Query: 745  FEKLTGTSLTLGFKSSKCDPSLFIFRAKSSIAYLLVYVDDIILTGNSPSLLKIITSKLHQ 924
            +++LT T L +GF  S+CDPSL +     +  Y+LVYVDDI++TG++P L+K +  KL+ 
Sbjct: 177  YDRLTQTLLQMGFTKSRCDPSLLVHHQNGACTYVLVYVDDILITGSAPHLIKDLIHKLNI 236

Query: 925  NFALKELGDLEYFLGIEVHKQANGSLLLTQSKYIRDLLAKTGMQESAAIASPMASSTKLS 1104
             FALK+LG+++YFLG+EVH   +GS+LL QSKYI+DLL KT M+    I SPM SS KLS
Sbjct: 237  KFALKQLGEVDYFLGLEVHHSTSGSILLHQSKYIKDLLCKTKMENCKPIGSPMVSSCKLS 296

Query: 1105 KMGSLQFKDPTFYRSVVGALQYATLTRPELSYSVNKVCQFMADPLDTHWAAVKRILRYLK 1284
            K G+   +DP+ YRS VGALQYATLTRP++++SVNKVCQFMA PL++HW AVKRILRYLK
Sbjct: 297  KFGTDTMEDPSLYRSTVGALQYATLTRPDIAFSVNKVCQFMAHPLESHWKAVKRILRYLK 356

Query: 1285 GTIHHGLVFNAANKQKPFTLAGFCDADWASDPDDRRSTSGSAIYFGPNLVSWWSRKQPLV 1464
            GT +HGL+ + +    PF++  + DADWA+D DDRRSTSGS IYFG NLVSW S+KQPLV
Sbjct: 357  GTENHGLLLHPSKSSPPFSIRAYSDADWANDQDDRRSTSGSCIYFGSNLVSWSSKKQPLV 416

Query: 1465 ARSSAEAEHRSLAHTTSEILWIQTLLSELHVKTTHPIIHCDNQS 1596
            ARSS EAE+RS+A+TT+++LWIQ+LL EL +    P + CDN S
Sbjct: 417  ARSSTEAEYRSMANTTADLLWIQSLLVELQIPCHIPTLLCDNLS 460