BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus22_contig00023975
         (1283 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KHN49021.1| hypothetical protein glysoja_031232, partial [Gly...   202   4e-58
gb|KHN21230.1| Retrovirus-related Pol polyprotein from transposo...   202   2e-53
ref|XP_014632953.1| PREDICTED: uncharacterized protein LOC102666...   143   9e-44
ref|XP_014627013.1| PREDICTED: uncharacterized protein LOC106797...   163   6e-43
gb|KHN37157.1| hypothetical protein glysoja_046755, partial [Gly...   132   7e-33
gb|KYP34307.1| Retrovirus-related Pol polyprotein from transposo...   104   4e-28
gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposo...   106   1e-27
gb|KYP33001.1| hypothetical protein KK1_046197, partial [Cajanus...   105   1e-26
gb|PNY05793.1| histone deacetylase [Trifolium pratense]               100   2e-25
gb|KHN36156.1| Retrovirus-related Pol polyprotein from transposo...   102   8e-25
gb|KHN22040.1| Retrovirus-related Pol polyprotein from transposo...   102   8e-25
gb|PNX93473.1| retrovirus-related Pol polyprotein from transposo...    97   8e-25
gb|KHN46090.1| hypothetical protein glysoja_030091, partial [Gly...    90   2e-24
gb|KYP45646.1| hypothetical protein KK1_032760, partial [Cajanus...   108   6e-24
gb|PNX99033.1| retrovirus-related Pol polyprotein from transposo...   103   1e-23
gb|PNX81124.1| histone deacetylase, partial [Trifolium pratense]       93   2e-23
gb|PNX82441.1| retrovirus-related Pol polyprotein from transposo...    95   1e-22
gb|PNX89801.1| retrovirus-related Pol polyprotein from transposo...    93   3e-22
gb|PNX89792.1| retrovirus-related Pol polyprotein from transposo...    93   3e-22
gb|PNX92571.1| histone deacetylase [Trifolium pratense]                91   8e-22

>gb|KHN49021.1| hypothetical protein glysoja_031232, partial [Glycine soja]
          Length = 323

 Score =  202 bits (515), Expect = 4e-58
 Identities = 112/192 (58%), Positives = 127/192 (66%), Gaps = 6/192 (3%)
 Frame = -3

Query: 1143 TFNYKILVKLDENNYLVWLQQVEPVLGAYCLHRYCVAPDIPPQFNGDQDCASNTENPTYF 964
            +FNYKI VKLD  NYLVWLQQ+EPVL A+ LHR+CV P+IPPQ+  + D  +N ENP + 
Sbjct: 14   SFNYKISVKLDATNYLVWLQQIEPVLRAHRLHRFCVTPEIPPQYASEHDRLANIENPAFS 73

Query: 963  VWEXXXXXXXXXXXXXXXXL--PSIIGCRHTFQLRENIHQTFQSIXXXXXXXXXXXXXXX 790
             WE                   PS+IGC+HTFQL ENIHQ+FQS                
Sbjct: 74   NWELQDQLLLAWLQSSLSPAILPSVIGCKHTFQLWENIHQSFQSKTKAQARQLRTQLRTT 133

Query: 789  KKGSSTI*VSSEN*TH----LLSIGESVSLQDQLDVILEGLPTEFESLVTLINSKIDWFD 622
            KKGSS+I        H    L SIGESVSLQDQLDVILEGLP EFESLVTLINSKI+WFD
Sbjct: 134  KKGSSSISEFLAKIKHISDSLTSIGESVSLQDQLDVILEGLPNEFESLVTLINSKIEWFD 193

Query: 621  LEEIKALLLAHE 586
            LEEI+ALLLAHE
Sbjct: 194  LEEIRALLLAHE 205



 Score = 83.2 bits (204), Expect = 6e-14
 Identities = 68/181 (37%), Positives = 89/181 (49%), Gaps = 17/181 (9%)
 Frame = -1

Query: 767 EFLAKIKHIFFPLVNLSLFKIS*T*FLKDCQPNLNPSSLS*TAK*IGLTLRRSKL----- 603
           EFLAKIKHI     + SL  I  +  L+D Q ++    L    + + +TL  SK+     
Sbjct: 142 EFLAKIKHI-----SDSLTSIGESVSLQD-QLDVILEGLPNEFESL-VTLINSKIEWFDL 194

Query: 602 ----CYSLMNIVRLDKQRVVEEAASLNLTQAQ-------SPSSTDASQQQQVAQANYTGN 456
                  L +  RLDK R+ EEAASLN TQ+Q       S +   A++ Q   QAN+T  
Sbjct: 195 EEIRALLLAHEQRLDKARITEEAASLNFTQSQPNSKIPNSVNPNSATETQIAPQANWTTG 254

Query: 455 TPNSDNSQTLGSGFRGNSQICXXXXXXXXXXXXXXXXFN-VQCQVCHRPSHDASYCYHRF 279
             NS N  +  + F+ N+Q                   + VQCQVCHR  HDASYCYHRF
Sbjct: 255 NSNSGNYDSQNNNFKNNNQSRGRGGRNGRGNRGGRGGRSTVQCQVCHRTGHDASYCYHRF 314

Query: 278 N 276
           N
Sbjct: 315 N 315


>gb|KHN21230.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1429

 Score =  202 bits (515), Expect = 2e-53
 Identities = 112/192 (58%), Positives = 127/192 (66%), Gaps = 6/192 (3%)
 Frame = -3

Query: 1143 TFNYKILVKLDENNYLVWLQQVEPVLGAYCLHRYCVAPDIPPQFNGDQDCASNTENPTYF 964
            +FNYKI VKLD  NYLVWLQQ+EPVL A+ LHR+CV P+IPPQ+  + D  +N ENP + 
Sbjct: 1    SFNYKISVKLDATNYLVWLQQIEPVLRAHRLHRFCVTPEIPPQYASEHDRLANIENPAFS 60

Query: 963  VWEXXXXXXXXXXXXXXXXL--PSIIGCRHTFQLRENIHQTFQSIXXXXXXXXXXXXXXX 790
             WE                   PS+IGC+HTFQL ENIHQ+FQS                
Sbjct: 61   NWELQDQLLLAWLQSSLSPAILPSVIGCKHTFQLWENIHQSFQSKTKAQARQLRTQLRTT 120

Query: 789  KKGSSTI*VSSEN*TH----LLSIGESVSLQDQLDVILEGLPTEFESLVTLINSKIDWFD 622
            KKGSS+I        H    L SIGESVSLQDQLDVILEGLP EFESLVTLINSKI+WFD
Sbjct: 121  KKGSSSISEFLAKIKHISDSLTSIGESVSLQDQLDVILEGLPNEFESLVTLINSKIEWFD 180

Query: 621  LEEIKALLLAHE 586
            LEEI+ALLLAHE
Sbjct: 181  LEEIRALLLAHE 192



 Score =  147 bits (370), Expect = 2e-34
 Identities = 112/282 (39%), Positives = 138/282 (48%), Gaps = 27/282 (9%)
 Frame = -1

Query: 767 EFLAKIKHIFFPLVNLSLFKIS*T*FLKDCQPNLNPSSLS*TAK*IGLTLRRSKL----- 603
           EFLAKIKHI     + SL  I  +  L+D Q ++    L    + + +TL  SK+     
Sbjct: 129 EFLAKIKHI-----SDSLTSIGESVSLQD-QLDVILEGLPNEFESL-VTLINSKIEWFDL 181

Query: 602 ----CYSLMNIVRLDKQRVVEEAASLNLTQAQSPSST-------DASQQQQVAQANYTGN 456
                  L +  RLDK R+ EEAASLN TQ+Q  S T        A++ Q   QAN+T  
Sbjct: 182 EEIRALLLAHEQRLDKARITEEAASLNFTQSQPNSKTPNSVNPNSATETQIAPQANWTTG 241

Query: 455 TPNSDNSQTLGSGFRGNSQICXXXXXXXXXXXXXXXXFN-VQCQVCHRPSHDASYCYHRF 279
             NS N  +  + F+ N+Q                   + VQCQVCHR  HDASYCYHRF
Sbjct: 242 NSNSGNYDSQNNNFKNNNQSRGRGGRNGRGNRGGRGGRSTVQCQVCHRTGHDASYCYHRF 301

Query: 278 NXXXXXXXXXXXXXXXXXXYIRPPAANN--TT*PQGTMIVSPEANFTGT--------HAQ 129
           N                      P  NN   + PQ     +P+ANFTG         +A 
Sbjct: 302 NAAYGSNQPYVHGNPYQYVRNTTPNNNNWAQSNPQWQQ-AAPQANFTGYAPQTNFTGYAM 360

Query: 128 HPTGNNFMDTVATNHVTSMHATPGSTPPPSHLENIFLGNGQG 3
           HPT NN +DT AT HVT M   PGS PPPSHLE+IFLGNGQG
Sbjct: 361 HPTMNNNLDTAATQHVTLMQPPPGSAPPPSHLEHIFLGNGQG 402


>ref|XP_014632953.1| PREDICTED: uncharacterized protein LOC102666325 [Glycine max]
          Length = 608

 Score =  143 bits (360), Expect(2) = 9e-44
 Identities = 89/209 (42%), Positives = 106/209 (50%), Gaps = 18/209 (8%)
 Frame = -1

Query: 578 RLDKQRVVEEAASLNLTQAQSPSSTD-------ASQQQQVAQANYTGNTPNSDNSQTLGS 420
           RLDK R+ EEAASLN TQ+Q  S T        A++ Q   QAN+T    NS N  +  +
Sbjct: 161 RLDKARITEEAASLNFTQSQPNSKTPNSVNPNFATETQIAPQANWTTGNSNSGNYDSQNN 220

Query: 419 GFRGNSQICXXXXXXXXXXXXXXXXFN-VQCQVCHRPSHDASYCYHRFNXXXXXXXXXXX 243
            F+ N+Q                   + VQCQVCH   HDASYCYHRFN           
Sbjct: 221 NFKNNNQSRGRGGRNGRGNRGGHGGHSTVQCQVCHHTGHDASYCYHRFNAAYGSNQPYVH 280

Query: 242 XXXXXXXYIRPPAANN--TT*PQGTMIVSPEANFTG--------THAQHPTGNNFMDTVA 93
                      P  NN   + PQ     +P+ANFTG        ++A HPT NN +DT A
Sbjct: 281 GNPYQYVRNTTPNNNNWAQSNPQWQQ-AAPQANFTGYAPQTNFTSYAMHPTMNNNLDTAA 339

Query: 92  TNHVTSMHATPGSTPPPSHLENIFLGNGQ 6
           T HVT M   PGS PPPSHLE+IFLGNGQ
Sbjct: 340 TQHVTLMQPPPGSAPPPSHLEHIFLGNGQ 368



 Score = 64.3 bits (155), Expect(2) = 9e-44
 Identities = 30/33 (90%), Positives = 32/33 (96%)
 Frame = -3

Query: 684 GLPTEFESLVTLINSKIDWFDLEEIKALLLAHE 586
           GLP EFESLVTLINSKI+WFDLEEI+ALLLAHE
Sbjct: 127 GLPNEFESLVTLINSKIEWFDLEEIRALLLAHE 159


>ref|XP_014627013.1| PREDICTED: uncharacterized protein LOC106797270 [Glycine max]
          Length = 329

 Score =  163 bits (412), Expect = 6e-43
 Identities = 93/172 (54%), Positives = 109/172 (63%), Gaps = 6/172 (3%)
 Frame = -3

Query: 1083 QVEPVLGAYCLHRYCVAPDIPPQFNGDQDCASNTENPTYFVWEXXXXXXXXXXXXXXXXL 904
            ++EPVL A+ LHR+CV P+IPPQ+  + D  +N EN  +  WE                 
Sbjct: 12   KIEPVLRAHRLHRFCVTPEIPPQYASEHDRLANIENSAFSNWELQDQFFLAWLQSSLSPA 71

Query: 903  --PSIIGCRHTFQLRENIHQTFQSIXXXXXXXXXXXXXXXKKGSSTI*VSSEN*TH---- 742
              PS+IGC+HTFQL ENIHQ+FQS                KKGSS+I        H    
Sbjct: 72   ILPSVIGCKHTFQLWENIHQSFQSKTKAQARQLRTQLRTTKKGSSSISEFLAKIKHISDS 131

Query: 741  LLSIGESVSLQDQLDVILEGLPTEFESLVTLINSKIDWFDLEEIKALLLAHE 586
            L SIGESVSLQDQLDVILEGLP EFESLVTLINSKI+WF+LEEI+ALLLAHE
Sbjct: 132  LTSIGESVSLQDQLDVILEGLPNEFESLVTLINSKIEWFNLEEIRALLLAHE 183



 Score = 81.6 bits (200), Expect = 2e-13
 Identities = 63/174 (36%), Positives = 81/174 (46%), Gaps = 10/174 (5%)
 Frame = -1

Query: 767 EFLAKIKHIFFPLVNL--SLFKIS*T*FLKDCQPNLNPSSLS*TAK*IGLTLRRSKLCYS 594
           EFLAKIKHI   L ++  S+        + +  PN   S ++     I            
Sbjct: 120 EFLAKIKHISDSLTSIGESVSLQDQLDVILEGLPNEFESLVTLINSKIEWFNLEEIRALL 179

Query: 593 LMNIVRLDKQRVVEEAASLNLTQAQSPSST-------DASQQQQVAQANYTGNTPNSDNS 435
           L +  RLDK R+ EEAASLN TQ+Q  S T        A++ Q   QAN+T    NS N 
Sbjct: 180 LAHEQRLDKARITEEAASLNFTQSQPNSKTPNSVNPNSATETQIAPQANWTTGNSNSGNY 239

Query: 434 QTLGSGFRGNSQICXXXXXXXXXXXXXXXXFN-VQCQVCHRPSHDASYCYHRFN 276
            +  + F+ N+Q                   + VQCQVCH   HDASYCYHRFN
Sbjct: 240 DSQNNNFKNNNQSRGRGGRNGRGNRGGRGGRSTVQCQVCHCTGHDASYCYHRFN 293


>gb|KHN37157.1| hypothetical protein glysoja_046755, partial [Glycine soja]
          Length = 194

 Score =  132 bits (332), Expect = 7e-33
 Identities = 80/144 (55%), Positives = 88/144 (61%), Gaps = 6/144 (4%)
 Frame = -3

Query: 999 DCASNTENPTYFVWEXXXXXXXXXXXXXXXXL--PSIIGCRHTFQLRENIHQTFQSIXXX 826
           D  +N ENP +  WE                   PS+IGC+HTFQL ENIHQ+FQS    
Sbjct: 1   DRLANIENPAFSNWELQDQLLLAWLQSSLSPAILPSVIGCKHTFQLWENIHQSFQSKTKA 60

Query: 825 XXXXXXXXXXXXKKGSSTI*VSSEN*TH----LLSIGESVSLQDQLDVILEGLPTEFESL 658
                       KKGSS+I        H    L SIGESVSLQDQLDVILEGLP EFESL
Sbjct: 61  QARQLRTQLRTTKKGSSSISEFLAKIKHISDSLTSIGESVSLQDQLDVILEGLPNEFESL 120

Query: 657 VTLINSKIDWFDLEEIKALLLAHE 586
           VTLINSKI+WFDLEEI+ALLLAHE
Sbjct: 121 VTLINSKIEWFDLEEIRALLLAHE 144


>gb|KYP34307.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1102

 Score =  104 bits (260), Expect(2) = 4e-28
 Identities = 70/195 (35%), Positives = 96/195 (49%), Gaps = 9/195 (4%)
 Frame = -3

Query: 1143 TFNYKILVKLDENNYLVWLQQVEPVLGAYCLHRYCVAPDIPPQFNGDQDCASNTENPTYF 964
            TF++ I  KLD  NYL+W QQVEPV+  + LH Y V P IP +F    D  +   + +Y 
Sbjct: 35   TFSHTISEKLDTKNYLLWCQQVEPVIKGHRLHHYLVNPQIPQKFATLADRDAGRISESYL 94

Query: 963  VWE--XXXXXXXXXXXXXXXXLPSIIGCRHTFQLRENIHQTFQSIXXXXXXXXXXXXXXX 790
             WE                  L  +IGC+ +FQL + IH  F S                
Sbjct: 95   AWEQQDQLLLSWLQSSMSKDMLTRVIGCKSSFQLWDKIHSYFHSHMNAKARQLRNELRNT 154

Query: 789  KKGSSTI*VSSEN*TH-------LLSIGESVSLQDQLDVILEGLPTEFESLVTLINSKID 631
               + +I   SE           L +IG SVS ++ LD+ILEGLP E+ES V+LI+S  D
Sbjct: 155  SLENLSI---SEYVLRIQTLVDALTAIGNSVSPKEHLDIILEGLPEEYESTVSLISSHFD 211

Query: 630  WFDLEEIKALLLAHE 586
               ++E++ LLL HE
Sbjct: 212  LLTIDEVETLLLGHE 226



 Score = 50.4 bits (119), Expect(2) = 4e-28
 Identities = 58/221 (26%), Positives = 80/221 (36%), Gaps = 29/221 (13%)
 Frame = -1

Query: 578 RLDKQRVVEEAASLNLTQAQS---PSSTD-----ASQQQQVAQANYTGNTPNSDNSQTLG 423
           RLDK +  + AAS+N+T   +   PS T+     A Q+ Q   ++  G   N    +   
Sbjct: 228 RLDKFKK-KVAASINVTTTTTEPNPSVTNPQAHLAHQENQSGFSHRQGGRTNFRGGRFSN 286

Query: 422 SGFRGNSQICXXXXXXXXXXXXXXXXFNVQCQVCHRPSHDASYCYHRFNXXXXXXXXXXX 243
              RG  +                     QCQVCHR  H AS CY+RF+           
Sbjct: 287 RAGRGRGRFA-----------------GYQCQVCHRYGHVASACYYRFDETYVPSSPLEA 329

Query: 242 XXXXXXXYIRPPAA---NNTT*PQG--------TMIVSPEANFTGTHAQ----------H 126
                      P A   N T  P              +P+  FT T AQ           
Sbjct: 330 PAYHSINQHTNPGAWYSNQTASPSSHRNEILGPRPQFTPQVQFTSTQAQPQAMIASSSSS 389

Query: 125 PTGNNFMDTVATNHVTSMHATPGSTPPPSHLENIFLGNGQG 3
              N + D+ A+NHVT++        P    + I +GNGQG
Sbjct: 390 SINNWYPDSRASNHVTNVSQNIHQFTPFEGPDQIHVGNGQG 430


>gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1408

 Score =  106 bits (264), Expect(2) = 1e-27
 Identities = 70/195 (35%), Positives = 98/195 (50%), Gaps = 9/195 (4%)
 Frame = -3

Query: 1143 TFNYKILVKLDENNYLVWLQQVEPVLGAYCLHRYCVAPDIPPQFNGDQDCASNTENPTYF 964
            TF++ I  KLD  NYL+W QQVEPV+  + LH Y V P IP +F    D  +   + +Y 
Sbjct: 35   TFSHTISEKLDTKNYLLWCQQVEPVIKGHRLHHYLVNPQIPQKFATLADRDAGHISESYL 94

Query: 963  VWE--XXXXXXXXXXXXXXXXLPSIIGCRHTFQLRENIHQTFQSIXXXXXXXXXXXXXXX 790
             WE                  L  +IGC+ +FQL + IH  F S                
Sbjct: 95   AWEQQDQLLLSWLQSSMSKDMLTRVIGCKSSFQLWDKIHTYFHSHMNAKARQLRNELRST 154

Query: 789  KKGSSTI*VSSEN*TH-------LLSIGESVSLQDQLDVILEGLPTEFESLVTLINSKID 631
               + +I   SE           L +IG+SVS ++ LD+ILEGLP E+ES V+LI+S+ D
Sbjct: 155  TLDNLSI---SEYVLRIQTLVDALTAIGDSVSPKEHLDIILEGLPEEYESTVSLISSRFD 211

Query: 630  WFDLEEIKALLLAHE 586
               ++E++ LLL HE
Sbjct: 212  LLTIDEVETLLLGHE 226



 Score = 47.4 bits (111), Expect(2) = 1e-27
 Identities = 52/202 (25%), Positives = 75/202 (37%), Gaps = 10/202 (4%)
 Frame = -1

Query: 578 RLDKQRVVEEAASLNLTQAQS---PSSTDAS-----QQQQVAQANYTGNTPNSDNSQTLG 423
           RLDK +  + AAS+N+T A +   PS+T+       Q  Q   ++  G   NS   +   
Sbjct: 228 RLDKFKK-KAAASINVTTAVTEPDPSATNPQAHLTHQNNQSGPSHRRGGRTNSRGGRFSN 286

Query: 422 SGFRGNSQICXXXXXXXXXXXXXXXXFNVQCQVCHRPSHDASYCYHRFNXXXXXXXXXXX 243
              RG  +                     QCQVCHR  H AS CY+RF            
Sbjct: 287 WAGRGRGRFA-----------------GYQCQVCHRYGHVASACYYRF------------ 317

Query: 242 XXXXXXXYIRPPAANNTT*PQGTMIVSPEANFTGTHAQHPTGNN--FMDTVATNHVTSMH 69
                          + T    + + +P       H      NN  + D+ A+NHVT++ 
Sbjct: 318 ---------------DETYVPSSPLEAPAYPSNNQHTNPGACNNNWYPDSGASNHVTNVS 362

Query: 68  ATPGSTPPPSHLENIFLGNGQG 3
                  P    + I +GNGQG
Sbjct: 363 QNIHQFTPFEGPDQIHVGNGQG 384


>gb|KYP33001.1| hypothetical protein KK1_046197, partial [Cajanus cajan]
          Length = 470

 Score =  105 bits (262), Expect(2) = 1e-26
 Identities = 69/195 (35%), Positives = 98/195 (50%), Gaps = 9/195 (4%)
 Frame = -3

Query: 1143 TFNYKILVKLDENNYLVWLQQVEPVLGAYCLHRYCVAPDIPPQFNGDQDCASNTENPTYF 964
            TF++ I  KL   NYL+W QQVEPV+  + LH Y V P IP +F    D  +   + +Y 
Sbjct: 14   TFSHTISEKLGTKNYLLWCQQVEPVIKGHRLHHYLVNPQIPQKFATLADRDAGCISESYL 73

Query: 963  VWE--XXXXXXXXXXXXXXXXLPSIIGCRHTFQLRENIHQTFQSIXXXXXXXXXXXXXXX 790
             WE                  L  +IGC+ +FQL + IH  F S                
Sbjct: 74   AWEQQDQLLLSWLQSSMSKDMLTRVIGCKSSFQLWDKIHSYFHSHMNAKACQLRNELCST 133

Query: 789  KKGSSTI*VSSEN*TH-------LLSIGESVSLQDQLDVILEGLPTEFESLVTLINSKID 631
               + +I   SE           L +IG+SVSL++ LD+ILEGLP E+ES ++LI+S+ D
Sbjct: 134  SLENLSI---SEYVLRIQTLVDALTAIGDSVSLKEHLDIILEGLPEEYESTMSLISSRFD 190

Query: 630  WFDLEEIKALLLAHE 586
               ++E++ LLL HE
Sbjct: 191  LLTIDEVETLLLGHE 205



 Score = 44.7 bits (104), Expect(2) = 1e-26
 Identities = 58/221 (26%), Positives = 82/221 (37%), Gaps = 29/221 (13%)
 Frame = -1

Query: 578 RLDKQRVVEEAASLNLTQAQ---SPSSTD-----ASQQQQVAQANYTGNTPNSDNSQTLG 423
           RLDK +  + AA +N+T A    +PS T+     A Q+ Q   ++  G   N    +   
Sbjct: 207 RLDKFKK-KAAAYINVTTATIEPNPSVTNPQAHLAHQENQSGFSHRRGGHTNFRGGRFSN 265

Query: 422 SGFRGNSQICXXXXXXXXXXXXXXXXFNVQCQVCHRPSHDASYCYHRFNXXXXXXXXXXX 243
              RG  +                     QCQVCHR  H AS CY+RF+           
Sbjct: 266 RAGRGRGRFAAY-----------------QCQVCHRYEHVASACYYRFDETYVPSSPLEA 308

Query: 242 XXXXXXXYIRPPAA--NN---TT*PQGTMIV------SPEANFTGTHAQ----------H 126
                      P A  NN   +  P    I+      +P+  FT T AQ           
Sbjct: 309 PAYHSINQHTNPGAWYNNQPASPSPHQNGILGPRPQFTPQVQFTSTQAQPQAMIASSSSS 368

Query: 125 PTGNNFMDTVATNHVTSMHATPGSTPPPSHLENIFLGNGQG 3
              N + D+ A+NHVT++             + I +GNGQG
Sbjct: 369 SNNNWYPDSGASNHVTNVSQNIHQFTLFKGPDQIHVGNGQG 409


>gb|PNY05793.1| histone deacetylase [Trifolium pratense]
          Length = 1485

 Score =  100 bits (249), Expect(2) = 2e-25
 Identities = 62/190 (32%), Positives = 101/190 (53%), Gaps = 7/190 (3%)
 Frame = -3

Query: 1134 YKILVKLDENNYLVWLQQVEPVLGAYCLHRYCVAPDIPPQFNGDQDCASNTENPTYFVW- 958
            + + +KLDE N+L+W QQV  V+ A+ LHR+ + P IP +F  +++ A+NT    Y  W 
Sbjct: 47   HSLTIKLDEKNFLLWSQQVNGVITAHNLHRFILNPKIPLKFATEEERATNTFCDEYRKWL 106

Query: 957  -EXXXXXXXXXXXXXXXXLPSIIGCRHTFQLRENIHQTFQSIXXXXXXXXXXXXXXXKK- 784
             +                LP ++GC+H +Q+ + IH+ F S+               KK 
Sbjct: 107  MQDQTLFTWLLSTLSDGVLPRVLGCKHAYQVWDKIHKYFNSLLKARARQLRSELKNTKKL 166

Query: 783  ----GSSTI*VSSEN*THLLSIGESVSLQDQLDVILEGLPTEFESLVTLINSKIDWFDLE 616
                G   + + +     L +IG++VS Q+ +D ILEGLP EF S V +I S++D   +E
Sbjct: 167  ARSIGEYLLRIKTII-DSLTAIGDTVSDQEHIDAILEGLPEEFNSFVMMIYSRLDTPTVE 225

Query: 615  EIKALLLAHE 586
            +++ALL+  E
Sbjct: 226  DVEALLMVQE 235



 Score = 45.4 bits (106), Expect(2) = 2e-25
 Identities = 40/194 (20%), Positives = 74/194 (38%), Gaps = 5/194 (2%)
 Frame = -1

Query: 569 KQRVVEEAASLNLTQAQSPSSTDASQQQ--QVAQANYTGNTPNSDNSQTLGSGFRGNSQI 396
           +Q +     S NL Q+++ +S ++   +  +V   +Y          +  G G RG S  
Sbjct: 242 RQELASPNVSANLAQSEAKTSAESVNHENTEVGTEHYAAGGKGRGRGRGRGRG-RGRSS- 299

Query: 395 CXXXXXXXXXXXXXXXXFNVQCQVCHRPSHDASYCYHRFN-XXXXXXXXXXXXXXXXXXY 219
                             +  CQ+C +  H+AS C++R++                    
Sbjct: 300 -------------KNPHSDSTCQICGKNGHEASGCWYRYDPNPTPKQFKFPGFASSSNPS 346

Query: 218 IRPPAANNTT*PQGTMIVSPEANFT--GTHAQHPTGNNFMDTVATNHVTSMHATPGSTPP 45
           +RPP+ N    P   +  +P    +  G  + +     + D+ AT+H+T          P
Sbjct: 347 MRPPSYNPYMRPNANLAFNPYYAMSEYGAPSVYSEAPWYPDSGATHHLTFNQQNLAQRSP 406

Query: 44  PSHLENIFLGNGQG 3
            +  E + +GNGQG
Sbjct: 407 YTGQEQVLMGNGQG 420


>gb|KHN36156.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1417

 Score =  102 bits (253), Expect(2) = 8e-25
 Identities = 63/187 (33%), Positives = 95/187 (50%), Gaps = 6/187 (3%)
 Frame = -3

Query: 1128 ILVKLDENNYLVWLQQVEPVLGAYCLHRYCVAPDIPPQFNGDQDCASNTENPTYFVW--E 955
            + +KLDE N+L+W QQV  V+ A+ LHR+ V P IP QF   +DCA    +  Y  W  +
Sbjct: 1    LTIKLDEKNFLLWSQQVNGVITAHNLHRFVVNPQIPLQFASIEDCALGINSDEYQQWLIK 60

Query: 954  XXXXXXXXXXXXXXXXLPSIIGCRHTFQLRENIHQTFQSIXXXXXXXXXXXXXXXKKGSS 775
                            LP ++ CRH  ++ + IH+ F S+               KK S 
Sbjct: 61   DQTLFTWLLSTLSDGVLPRVLSCRHAHEVWDKIHKYFNSVLKSRARQLRSELKNTKKLSR 120

Query: 774  TI*V----SSEN*THLLSIGESVSLQDQLDVILEGLPTEFESLVTLINSKIDWFDLEEIK 607
            ++             L+++G+ VS Q+Q+D ILEGLP EF S V ++ S+ D   +E+++
Sbjct: 121  SVNEYLLRIKSIVNSLVAVGDMVSEQEQVDSILEGLPEEFNSFVMMVYSRFDTPTVEDVE 180

Query: 606  ALLLAHE 586
            ALLL  E
Sbjct: 181  ALLLLQE 187



 Score = 42.0 bits (97), Expect(2) = 8e-25
 Identities = 42/192 (21%), Positives = 73/192 (38%), Gaps = 3/192 (1%)
 Frame = -1

Query: 569 KQRVVEEAASLNL--TQAQSPSSTDASQQQQVAQANYTGNTPNSDNSQTLGSGF-RGNSQ 399
           KQ +   + S N+  T+  +  S    + Q++   +Y  N  N    +  G G  RG  Q
Sbjct: 194 KQELTSPSVSANVAHTETNASDSNSEHESQELGTEHYNVNA-NRGRGRGKGRGRGRGKGQ 252

Query: 398 ICXXXXXXXXXXXXXXXXFNVQCQVCHRPSHDASYCYHRFNXXXXXXXXXXXXXXXXXXY 219
                               V+CQ+C +P+HDA  C++R++                   
Sbjct: 253 A--------------QNQGKVKCQICAKPNHDAINCWYRYDPQAMNQNSRGGYQVGPSN- 297

Query: 218 IRPPAANNTT*PQGTMIVSPEANFTGTHAQHPTGNNFMDTVATNHVTSMHATPGSTPPPS 39
            RP   N    P   + + P+        Q   G  + D+ A++H+T        + P +
Sbjct: 298 -RPQNFNPYMRPTAHLAM-PQPYAMPNMDQFSNGAWYPDSGASHHLTYNPNNLSYSSPYT 355

Query: 38  HLENIFLGNGQG 3
             + + +GNGQG
Sbjct: 356 GQDQVVMGNGQG 367


>gb|KHN22040.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1417

 Score =  102 bits (253), Expect(2) = 8e-25
 Identities = 63/187 (33%), Positives = 95/187 (50%), Gaps = 6/187 (3%)
 Frame = -3

Query: 1128 ILVKLDENNYLVWLQQVEPVLGAYCLHRYCVAPDIPPQFNGDQDCASNTENPTYFVW--E 955
            + +KLDE N+L+W QQV  V+ A+ LHR+ V P IP QF   +DCA    +  Y  W  +
Sbjct: 1    LTIKLDEKNFLLWSQQVNGVITAHNLHRFVVNPQIPLQFASIEDCALGINSDEYQQWLIK 60

Query: 954  XXXXXXXXXXXXXXXXLPSIIGCRHTFQLRENIHQTFQSIXXXXXXXXXXXXXXXKKGSS 775
                            LP ++ CRH  ++ + IH+ F S+               KK S 
Sbjct: 61   DQTLFTWLLSTLSDGVLPRVLSCRHAHEVWDKIHKYFNSVLKSRARQLRSELKNTKKLSR 120

Query: 774  TI*V----SSEN*THLLSIGESVSLQDQLDVILEGLPTEFESLVTLINSKIDWFDLEEIK 607
            ++             L+++G+ VS Q+Q+D ILEGLP EF S V ++ S+ D   +E+++
Sbjct: 121  SVNEYLLRIKSIVNSLVAVGDMVSEQEQVDSILEGLPEEFNSFVMMVYSRFDTPTVEDVE 180

Query: 606  ALLLAHE 586
            ALLL  E
Sbjct: 181  ALLLLQE 187



 Score = 42.0 bits (97), Expect(2) = 8e-25
 Identities = 42/192 (21%), Positives = 73/192 (38%), Gaps = 3/192 (1%)
 Frame = -1

Query: 569 KQRVVEEAASLNL--TQAQSPSSTDASQQQQVAQANYTGNTPNSDNSQTLGSGF-RGNSQ 399
           KQ +   + S N+  T+  +  S    + Q++   +Y  N  N    +  G G  RG  Q
Sbjct: 194 KQELTSPSVSANVAHTETNASDSNSEHESQELGTEHYNVNA-NRGRGRGKGRGRGRGKGQ 252

Query: 398 ICXXXXXXXXXXXXXXXXFNVQCQVCHRPSHDASYCYHRFNXXXXXXXXXXXXXXXXXXY 219
                               V+CQ+C +P+HDA  C++R++                   
Sbjct: 253 A--------------QNQGKVKCQICAKPNHDAINCWYRYDPQAMNQNSRGGYQVGPSN- 297

Query: 218 IRPPAANNTT*PQGTMIVSPEANFTGTHAQHPTGNNFMDTVATNHVTSMHATPGSTPPPS 39
            RP   N    P   + + P+        Q   G  + D+ A++H+T        + P +
Sbjct: 298 -RPQNFNPYMRPTAHLAM-PQPYAMPNMDQFSNGAWYPDSGASHHLTYNPNNLSYSSPYT 355

Query: 38  HLENIFLGNGQG 3
             + + +GNGQG
Sbjct: 356 GQDQVVMGNGQG 367


>gb|PNX93473.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1181

 Score = 97.1 bits (240), Expect(2) = 8e-25
 Identities = 66/194 (34%), Positives = 95/194 (48%), Gaps = 9/194 (4%)
 Frame = -3

Query: 1140 FNYKILVKLDENNYLVWLQQVEPVLGAYCLHRYCVAPDIPPQFNGDQDCASNTENPTYFV 961
            F  +I  KL E N+ +W QQVEP + A+ L  + VAP IPP+F  + D  + T NP Y  
Sbjct: 38   FTLRITEKLGEKNFHLWRQQVEPYINAHDLDDFLVAPQIPPRFLTEIDRITATLNPEYRQ 97

Query: 960  W--EXXXXXXXXXXXXXXXXLPSIIGCRHTFQLRENIHQTFQSIXXXXXXXXXXXXXXXK 787
            W  +                L   +G  HT++L   I   FQ                  
Sbjct: 98   WRQKDQMLLSWLQSTLSSEILTRFLGSHHTYELWGKILSYFQKQLRAKARQLRVELRSTT 157

Query: 786  KGSST-------I*VSSEN*THLLSIGESVSLQDQLDVILEGLPTEFESLVTLINSKIDW 628
              + T       I +  +N   L+SIG+ + L   LDVILEGLPT+F +++++I S+ D 
Sbjct: 158  LENRTVQEYLLRIRLLIDN---LVSIGDPLPLNQHLDVILEGLPTDFNTVISVIESQFDS 214

Query: 627  FDLEEIKALLLAHE 586
             D+ E++ALLLAHE
Sbjct: 215  IDMNEVEALLLAHE 228



 Score = 47.0 bits (110), Expect(2) = 8e-25
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
 Frame = -1

Query: 593 LMNIVRLDK--QRVVEEAASLNLTQ---AQSPSSTDASQQQQVAQANYTGNTPNSDNSQT 429
           L +  RLDK  ++ +E+AAS+N+ Q   +++P+      Q  V  +  T    N +   +
Sbjct: 225 LAHEARLDKSKKKTLEDAASINIAQNTNSEAPTQDPPMAQPSVNNSVGTDQNYNPNYGNS 284

Query: 428 LGSGFRGNSQICXXXXXXXXXXXXXXXXFNVQCQVCHRPSHDASYCYHRFN 276
            G G R N                     N QCQ+C +P+H A  C+HR N
Sbjct: 285 RGRGGRNNRG--RGGRYNGGRSNNNNPNSNTQCQICFKPNHSALDCWHRNN 333


>gb|KHN46090.1| hypothetical protein glysoja_030091, partial [Glycine soja]
          Length = 286

 Score = 90.1 bits (222), Expect(2) = 2e-24
 Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 6/187 (3%)
 Frame = -3

Query: 1128 ILVKLDENNYLVWLQQVEPVLGAYCLHRYCVAPDIPPQFNGDQDCASNTENPTYFVWEXX 949
            I VKLD+ N+  W QQ++ V+  + L R+   P IPP  +   D + +  N  Y  WE  
Sbjct: 1    ISVKLDDKNFKQWKQQIDGVVRGHRLQRFVTVPVIPPPSSSGSDSSLHDANSRYSNWEQQ 60

Query: 948  XXXXXXXXXXXXXXL--PSIIGCRHTFQLRENIHQTFQSIXXXXXXXXXXXXXXXKKGSS 775
                             P ++ C+H +Q+   +H+ F ++                KG+ 
Sbjct: 61   DALICTWLLSTISDSILPKLVDCKHAWQVWTEVHRYFGTLLSTKARQLRSELRRLTKGTL 120

Query: 774  TI*VSS----EN*THLLSIGESVSLQDQLDVILEGLPTEFESLVTLINSKIDWFDLEEIK 607
            TI        E    L+SIG+ V L++ ++++L+ LP E++S+V  INSK +   L+E++
Sbjct: 121  TIAELMIRVREISESLVSIGDPVPLRNLIEIVLDALPEEYDSIVAAINSKEEVGSLDELE 180

Query: 606  ALLLAHE 586
            + +LAHE
Sbjct: 181  SSMLAHE 187



 Score = 52.8 bits (125), Expect(2) = 2e-24
 Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
 Frame = -1

Query: 578 RLDKQR--VVEEAASLNLTQAQSPSSTDASQQQQVAQANYTGNTPN-SDNSQTLGSGFRG 408
           RL+K R  V+ E  ++NLTQA  PSS   S Q       +   T + + N +  G G RG
Sbjct: 189 RLEKHRKAVLTEPVTVNLTQASKPSSPATSDQSSAGTDAFPQGTSHVTANVENHGYGSRG 248

Query: 407 NSQICXXXXXXXXXXXXXXXXFNVQCQVCHRPSHDASYCYHR 282
                                   QCQ+CH+  HDAS CY+R
Sbjct: 249 GRS----NRGGGRFGRGGGRFGKTQCQICHKSGHDASICYYR 286


>gb|KYP45646.1| hypothetical protein KK1_032760, partial [Cajanus cajan]
          Length = 202

 Score =  108 bits (270), Expect = 6e-24
 Identities = 69/197 (35%), Positives = 98/197 (49%), Gaps = 11/197 (5%)
 Frame = -3

Query: 1143 TFNYKILVKLDENNYLVWLQQVEPVLGAYCLHRYCVAPDIPPQFNGDQDCASNTENPTYF 964
            TF + I  KLD  NYL+W QQVEPV+  + LH + V P IPP+F    D   N  +  Y 
Sbjct: 6    TFAHTISEKLDTKNYLLWCQQVEPVIKGHRLHHFLVNPQIPPKFLTISDKDENCVSEEYL 65

Query: 963  VWE--XXXXXXXXXXXXXXXXLPSIIGCRHTFQLRENIHQTFQSIXXXXXXXXXXXXXXX 790
             WE                  L  +IGC+ +FQ+ + IH+ F +                
Sbjct: 66   AWEQQDQLLLSWLQSSMSKDMLTHVIGCKSSFQIWDKIHEYFHAHTNAKARQLRSDLRST 125

Query: 789  KKGSSTI---------*VSSEN*THLLSIGESVSLQDQLDVILEGLPTEFESLVTLINSK 637
               + TI          V S     L +IG+SVS ++ L ++L+GLP E+ES V+LI+S+
Sbjct: 126  TLDNGTISDYLLRIQSLVDS-----LTAIGDSVSSKEHLGIVLDGLPEEYESTVSLISSR 180

Query: 636  IDWFDLEEIKALLLAHE 586
             D   +EE++ LLLAHE
Sbjct: 181  FDVLSIEEVETLLLAHE 197


>gb|PNX99033.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1101

 Score =  103 bits (258), Expect(2) = 1e-23
 Identities = 66/194 (34%), Positives = 100/194 (51%), Gaps = 11/194 (5%)
 Frame = -3

Query: 1134 YKILVKLDENNYLVWLQQVEPVLGAYCLHRYCVAPDIPPQFNGDQDCASNTENPTYFVW- 958
            + + +KLDE NYL+W QQV  V+ A+ LHR+ V P IP QF+  +D    T +  Y  W 
Sbjct: 35   HSLTIKLDEKNYLLWSQQVNGVITAHNLHRFVVNPQIPLQFDSLEDRIQGTNSTAYQQWL 94

Query: 957  -EXXXXXXXXXXXXXXXXLPSIIGCRHTFQLRENIHQTFQSIXXXXXXXXXXXXXXXKKG 781
             +                LP ++ CRH  ++ + IH+ F S+               KK 
Sbjct: 95   VKDQTLFTWLLSTLSESVLPRVLSCRHAHEVWDKIHKYFNSVLKSRTRQLRSELKNTKKL 154

Query: 780  SSTI---------*VSSEN*THLLSIGESVSLQDQLDVILEGLPTEFESLVTLINSKIDW 628
            + +I          V+S     L+++G+SVS Q+Q+D ILEGLP EF S V ++ S+ D 
Sbjct: 155  ARSINEYLLRIKTIVNS-----LIAVGDSVSEQEQVDAILEGLPEEFNSFVMMVYSRFDS 209

Query: 627  FDLEEIKALLLAHE 586
              +E+++ALLL  E
Sbjct: 210  PTVEDVEALLLLQE 223



 Score = 36.2 bits (82), Expect(2) = 1e-23
 Identities = 41/192 (21%), Positives = 69/192 (35%), Gaps = 3/192 (1%)
 Frame = -1

Query: 569 KQRVVEEAASLNLTQAQSPSSTDASQQQ--QVAQANYTGNTPNSDNSQTLGSGFRGNSQI 396
           KQ +   + S N+  A + SS   + Q   + A  +Y  N              RG +Q 
Sbjct: 230 KQELSNPSVSANVAHADAQSSDSVNNQDLPETASEHYNVNVHRGRGRGKGKGRGRGRNQ- 288

Query: 395 CXXXXXXXXXXXXXXXXFNVQCQVCHRPSHDASYCYHRFNXXXXXXXXXXXXXXXXXXYI 216
                              V+CQ+C + +HDA  C++R++                    
Sbjct: 289 -------------HQSQGKVECQICSKSNHDAINCWYRYD---PPAMRNNRRGNNAGPAA 332

Query: 215 RPPAANNTT*PQGTMIVSP-EANFTGTHAQHPTGNNFMDTVATNHVTSMHATPGSTPPPS 39
           RP   N    P   + +    A  T   A   + + + D+ A++H+T          P +
Sbjct: 333 RPQNFNPYMRPSAHLAMPQYYAPMTDMDAM-SSASWYPDSGASHHLTYNPNNLAYRTPYT 391

Query: 38  HLENIFLGNGQG 3
             E + +GNGQG
Sbjct: 392 GHEQVMMGNGQG 403


>gb|PNX81124.1| histone deacetylase, partial [Trifolium pratense]
          Length = 660

 Score = 93.2 bits (230), Expect(2) = 2e-23
 Identities = 60/189 (31%), Positives = 96/189 (50%), Gaps = 6/189 (3%)
 Frame = -3

Query: 1134 YKILVKLDENNYLVWLQQVEPVLGAYCLHRYCVAPDIPPQFNG--DQDCASNTENPTYFV 961
            + + +KLDE N+L+W QQV  V+ A+ LHR  V P+IP QF    D+    N+E    ++
Sbjct: 33   HSLTIKLDEKNFLLWSQQVNGVITAHNLHRLVVNPEIPLQFASVTDRLDGKNSEEYQKWL 92

Query: 960  WEXXXXXXXXXXXXXXXXLPSIIGCRHTFQLRENIHQTFQSIXXXXXXXXXXXXXXXKKG 781
            ++                LP ++ C+H++++ E IH  F S+               KK 
Sbjct: 93   FKDQTLFTWLLSTISDGVLPRVLSCKHSYEVWEKIHTYFNSVLKSRARQLRSELKNTKKH 152

Query: 780  SSTI*V----SSEN*THLLSIGESVSLQDQLDVILEGLPTEFESLVTLINSKIDWFDLEE 613
            S T+             L++IG+ VS ++Q+D ILEGL  EF   V ++ S+ D   +E+
Sbjct: 153  SRTVNEYLLRIKSIVNSLIAIGDVVSEREQVDAILEGLSEEFNPFVMMVYSRTDTPSVED 212

Query: 612  IKALLLAHE 586
            ++ALLL  E
Sbjct: 213  VEALLLLQE 221



 Score = 45.8 bits (107), Expect(2) = 2e-23
 Identities = 41/190 (21%), Positives = 71/190 (37%), Gaps = 1/190 (0%)
 Frame = -1

Query: 569 KQRVVEEAASLNLTQAQSPSSTDA-SQQQQVAQANYTGNTPNSDNSQTLGSGFRGNSQIC 393
           +Q +   + S N+ Q +S +S ++ S+ Q+ A  +Y  N              RG +Q+ 
Sbjct: 228 RQELANPSVSANVAQIESKNSNNSDSEGQESATEHYNFNAQRGRGRNKGRGRGRGKAQVA 287

Query: 392 XXXXXXXXXXXXXXXXFNVQCQVCHRPSHDASYCYHRFNXXXXXXXXXXXXXXXXXXYIR 213
                             VQCQ+C + +HDAS C+HR++                    R
Sbjct: 288 SNTG-------------KVQCQICSKYNHDASICWHRYDPSSSRPTGRGYNAGNNP---R 331

Query: 212 PPAANNTT*PQGTMIVSPEANFTGTHAQHPTGNNFMDTVATNHVTSMHATPGSTPPPSHL 33
           P   N    P   + +    N           + + D+ A++H+T          P    
Sbjct: 332 PXXYNPYPRPSAHLALPQYYNPIPDMDSVSAASWYPDSGASHHLTFNPNNLAYRVPYQGH 391

Query: 32  ENIFLGNGQG 3
           + + +GNGQG
Sbjct: 392 DQVTMGNGQG 401


>gb|PNX82441.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 537

 Score = 95.1 bits (235), Expect(2) = 1e-22
 Identities = 59/189 (31%), Positives = 94/189 (49%), Gaps = 6/189 (3%)
 Frame = -3

Query: 1134 YKILVKLDENNYLVWLQQVEPVLGAYCLHRYCVAPDIPPQFNGDQDCASNTENPTYFVW- 958
            + + +KLDE NYL+W QQV  V+ A+ LHR+ V P+IP Q+    D      +  Y  W 
Sbjct: 16   HSLTIKLDEKNYLLWNQQVNGVITAHNLHRFVVNPEIPLQYTSVADRLDGKNSDEYQRWL 75

Query: 957  -EXXXXXXXXXXXXXXXXLPSIIGCRHTFQLRENIHQTFQSIXXXXXXXXXXXXXXXKKG 781
             +                LP ++ C+H+ ++ + IH+ F S+               KK 
Sbjct: 76   FKDQTLFTWLLSTISDGVLPRVLNCKHSHEVWDTIHKFFNSVLKSRARQLRSELKNTKKL 135

Query: 780  SSTI*V----SSEN*THLLSIGESVSLQDQLDVILEGLPTEFESLVTLINSKIDWFDLEE 613
            S ++             L+++G+ VS Q+Q+D ILEGLP EF S V ++ S+ +   +E 
Sbjct: 136  SKSVNEYLLRVKSIVNSLIAVGDVVSEQEQVDAILEGLPEEFNSFVMMVYSRFETPTVEN 195

Query: 612  IKALLLAHE 586
            ++ALLL  E
Sbjct: 196  VEALLLLQE 204



 Score = 41.6 bits (96), Expect(2) = 1e-22
 Identities = 44/192 (22%), Positives = 76/192 (39%), Gaps = 3/192 (1%)
 Frame = -1

Query: 569 KQRVVEEAASLNLTQAQSPSSTDASQ--QQQVAQANYTGNTPNSDNSQTLGSG-FRGNSQ 399
           +Q +   + S N+ Q ++ S++   +   Q+    +Y  NT N    +  G G  RG +Q
Sbjct: 211 RQELANPSVSANIAQVETNSNSPKLEYEDQESGTEHYNVNT-NRGRGRGKGRGRXRGKTQ 269

Query: 398 ICXXXXXXXXXXXXXXXXFNVQCQVCHRPSHDASYCYHRFNXXXXXXXXXXXXXXXXXXY 219
                               VQCQ+C + +HDA+ C++R+                    
Sbjct: 270 -------------NAPSTGKVQCQICGKSNHDAAICWYRYEPPXSKPKGRGHNAGNTS-- 314

Query: 218 IRPPAANNTT*PQGTMIVSPEANFTGTHAQHPTGNNFMDTVATNHVTSMHATPGSTPPPS 39
            RP   N    P   + + P+   T       T + + D+ A++H+T      G   P  
Sbjct: 315 -RPLHYNPYPRPTAHLAI-PQFYNTPDMDSVSTASWYPDSGASHHLTFNPNNIGYRMPYY 372

Query: 38  HLENIFLGNGQG 3
             + + +GNGQG
Sbjct: 373 GHDQVLMGNGQG 384


>gb|PNX89801.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 403

 Score = 92.8 bits (229), Expect(2) = 3e-22
 Identities = 59/189 (31%), Positives = 95/189 (50%), Gaps = 6/189 (3%)
 Frame = -3

Query: 1134 YKILVKLDENNYLVWLQQVEPVLGAYCLHRYCVAPDIPPQFNGDQDCASNTENPTYFVW- 958
            + + +KLDE NYL+W QQV  V+ A+ LH++ V PDIP QF    D      +  Y  W 
Sbjct: 35   HALTIKLDEKNYLLWNQQVNGVITAHNLHKFVVNPDIPLQFASVTDRLDGKFSEEYQKWL 94

Query: 957  -EXXXXXXXXXXXXXXXXLPSIIGCRHTFQLRENIHQTFQSIXXXXXXXXXXXXXXXKKG 781
             +                LP ++ C+H+ ++ + IH+ F S+               KK 
Sbjct: 95   FKDQSLFTWLLSTISDAVLPRVLHCKHSHEVWDKIHKYFNSVLKSRTRQLRSELKNTKKL 154

Query: 780  SSTI*V----SSEN*THLLSIGESVSLQDQLDVILEGLPTEFESLVTLINSKIDWFDLEE 613
            + ++             L+ +G++VS Q+Q+D ILEGLP EF S V ++ S+ +   +E+
Sbjct: 155  ARSVNEYLLRIKSIVNSLIVVGDTVSEQEQVDAILEGLPEEFNSFVMMVYSRFESPTVED 214

Query: 612  IKALLLAHE 586
            ++ALLL  E
Sbjct: 215  VEALLLLQE 223



 Score = 42.7 bits (99), Expect(2) = 3e-22
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
 Frame = -1

Query: 569 KQRVVEEAASLNLTQAQSPSS--TDASQQQQVAQANYTGNTPNSDNSQTLGSGFRGNSQI 396
           +Q +   + S N+   +S +S  +D + +Q++   +Y  N              RG +Q 
Sbjct: 230 RQELTNPSVSANIAHKESKNSNSSDDADEQEIGTEHYNVNVSRGRGRGKGRGRGRGKAQF 289

Query: 395 CXXXXXXXXXXXXXXXXFNVQCQVCHRPSHDASYCYHRF 279
                              VQCQ+C +P+HDA+ C+HR+
Sbjct: 290 -------------KSNSKKVQCQICAKPNHDAANCWHRY 315


>gb|PNX89792.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 403

 Score = 92.8 bits (229), Expect(2) = 3e-22
 Identities = 59/189 (31%), Positives = 95/189 (50%), Gaps = 6/189 (3%)
 Frame = -3

Query: 1134 YKILVKLDENNYLVWLQQVEPVLGAYCLHRYCVAPDIPPQFNGDQDCASNTENPTYFVW- 958
            + + +KLDE NYL+W QQV  V+ A+ LH++ V PDIP QF    D      +  Y  W 
Sbjct: 35   HALTIKLDEKNYLLWNQQVNGVITAHNLHKFVVNPDIPLQFASVTDRLDGKFSEEYQKWL 94

Query: 957  -EXXXXXXXXXXXXXXXXLPSIIGCRHTFQLRENIHQTFQSIXXXXXXXXXXXXXXXKKG 781
             +                LP ++ C+H+  + + IH+ F S+               KK 
Sbjct: 95   FKDQSLFTWLLSTISDAVLPRVLHCKHSHXVWDKIHKYFNSVLKSRTRQLRSELKNTKKL 154

Query: 780  SSTI*V----SSEN*THLLSIGESVSLQDQLDVILEGLPTEFESLVTLINSKIDWFDLEE 613
            + ++             L+++G++VS Q+Q+D ILEGLP EF S V ++ S+ +   +E+
Sbjct: 155  ARSVNEYLLRIKSIVNSLIAVGDTVSEQEQVDAILEGLPEEFNSFVMMVYSRFESPTVED 214

Query: 612  IKALLLAHE 586
            ++ALLL  E
Sbjct: 215  VEALLLLQE 223



 Score = 42.7 bits (99), Expect(2) = 3e-22
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
 Frame = -1

Query: 569 KQRVVEEAASLNLTQAQSPSS--TDASQQQQVAQANYTGNTPNSDNSQTLGSGFRGNSQI 396
           +Q +   + S N+   +S +S  +D + +Q++   +Y  N              RG +Q 
Sbjct: 230 RQELTNPSVSANIAHKESKNSNSSDDADEQEIGTEHYNVNVSRGRGRGKGRGRGRGKAQF 289

Query: 395 CXXXXXXXXXXXXXXXXFNVQCQVCHRPSHDASYCYHRF 279
                              VQCQ+C +P+HDA+ C+HR+
Sbjct: 290 -------------KSNSKKVQCQICAKPNHDAANCWHRY 315


>gb|PNX92571.1| histone deacetylase [Trifolium pratense]
          Length = 1488

 Score = 90.5 bits (223), Expect(2) = 8e-22
 Identities = 61/193 (31%), Positives = 87/193 (45%), Gaps = 6/193 (3%)
 Frame = -3

Query: 1146 YTFNYKILVKLDENNYLVWLQQVEPVLGAYCLHRYCVAPDIPPQFNGDQDCASNTENPTY 967
            + F+ KI  KL E N+ +W QQVEP + A+ L  Y V   IPPQF   +   + T NP Y
Sbjct: 37   FQFSLKIAEKLGEKNFHLWRQQVEPFINAHNLTDYVVCARIPPQFVDAEARRNGTVNPAY 96

Query: 966  FVW--EXXXXXXXXXXXXXXXXLPSIIGCRHTFQLRENIHQTFQSIXXXXXXXXXXXXXX 793
              W                   L  +IGC H  +L + +   F                 
Sbjct: 97   TKWRSRDQMLLSWLQSTLTGEILSRMIGCAHAHELWDRLFSYFHKQTRARARHLRVELRA 156

Query: 792  XKKGSSTI----*VSSEN*THLLSIGESVSLQDQLDVILEGLPTEFESLVTLINSKIDWF 625
                 S+I        +    L SIG+ + +   +DVILEGLP+E+   ++ I S+ D  
Sbjct: 157  KTLADSSISDYLLSIRQIVDELASIGDPLPVPHHIDVILEGLPSEYSPAISSIESRFDVL 216

Query: 624  DLEEIKALLLAHE 586
            DL+E++ LLLAHE
Sbjct: 217  DLDEVEVLLLAHE 229



 Score = 43.5 bits (101), Expect(2) = 8e-22
 Identities = 53/222 (23%), Positives = 81/222 (36%), Gaps = 33/222 (14%)
 Frame = -1

Query: 569 KQRVVEEAASLNLTQAQS-PSSTDASQQQQVAQANYTGNTPNSDNSQTLGSGFRGNSQIC 393
           K++ V +AASLNLT A    ++T+A        A+   + P+ ++ +    G RG     
Sbjct: 236 KKQTVSDAASLNLTHAAPMQTTTEAGSSSTAEPASPPAHEPDYNSFRGGRRGGRGGR--- 292

Query: 392 XXXXXXXXXXXXXXXXFNVQCQVCHRPSHDASYCYHRFNXXXXXXXXXXXXXXXXXXYI- 216
                            ++QCQVC +  H A  C+HRFN                     
Sbjct: 293 -------GGRGRGGRNADIQCQVCSKWGHAAFNCWHRFNQQFQPPGGAVGAQGMPHNAFM 345

Query: 215 ----------RPPAANN--------------TT*PQGTMIV--SPEANFTGTHAQHPTG- 117
                      PPA  N                 P+ T I   SP A  T   +    G 
Sbjct: 346 AYGNHPPYGYHPPAYGNHNGYYPPANTWMRPAYNPRPTSIPANSPSAFITNAASSSHAGP 405

Query: 116 ----NNFMDTVATNHVTSMHATPGSTPPPSHLENIFLGNGQG 3
               + + D+ A+ HVT+  +      P    ++I++GNGQG
Sbjct: 406 ASSASWYPDSGASFHVTNDASNLQQLTPFEGHDHIYIGNGQG 447