BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus22_contig00021908
         (1446 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNY06478.1| Ty3/gypsy retrotransposon protein [Trifolium prat...   240   1e-90
gb|PNY06477.1| hypothetical protein L195_g002943, partial [Trifo...   240   1e-90
gb|PNY17448.1| hypothetical protein L195_g014191 [Trifolium prat...   201   2e-75
gb|PNY00428.1| hypothetical protein L195_g023708, partial [Trifo...   206   2e-74
gb|KYP65719.1| Transposon Ty3-G Gag-Pol polyprotein [Cajanus cajan]   209   9e-72
dbj|GAU18789.1| hypothetical protein TSUD_80780 [Trifolium subte...   196   3e-70
gb|PNX92586.1| Ty3/gypsy retrotransposon protein, partial [Trifo...   191   3e-69
gb|PNY13776.1| Ty3/gypsy retrotransposon protein [Trifolium prat...   188   3e-68
gb|PNX96526.1| transposon Tf2-1 polyprotein, partial [Trifolium ...   193   5e-68
gb|KYP75124.1| Transposon Ty3-G Gag-Pol polyprotein [Cajanus cajan]   201   9e-68
ref|XP_019450597.1| PREDICTED: uncharacterized protein LOC109352...   189   1e-67
gb|PNY18032.1| Ty3/gypsy retrotransposon protein [Trifolium prat...   183   1e-66
gb|PNX96205.1| Ty3/gypsy retrotransposon protein, partial [Trifo...   179   4e-65
gb|KYP37502.1| Retrotransposable element Tf2 [Cajanus cajan]          162   4e-62
gb|OMO79377.1| reverse transcriptase [Corchorus capsularis]           172   2e-60
gb|PNX94328.1| Ty3/gypsy retrotransposon protein, partial [Trifo...   166   2e-58
gb|KYP68328.1| Retrotransposable element Tf2 [Cajanus cajan]          212   3e-58
dbj|GAU51717.1| hypothetical protein TSUD_415230, partial [Trifo...   160   3e-56
gb|OMO96556.1| reverse transcriptase [Corchorus capsularis]           159   4e-55
gb|AAO23078.1| polyprotein [Glycine max]                              166   6e-55

>gb|PNY06478.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 1501

 Score =  240 bits (613), Expect(2) = 1e-90
 Identities = 141/330 (42%), Positives = 190/330 (57%), Gaps = 7/330 (2%)
 Frame = -1

Query: 1350 FQ*EILSRMQAESMYECEMYAIT-GQKKWCHYLLGRHFRIFTDQCILSYHRLYKHRQNTN 1174
            F  ++  RMQ  S Y+ EMYAIT   +KW  YLLGRHFRIFTDQ  L    L +  Q  +
Sbjct: 861  FSRKLCLRMQVASAYDREMYAITEAVRKWRQYLLGRHFRIFTDQKSLK-GMLGQIIQTPS 919

Query: 1173 G*RSY*CMTMKLFIPQDV---PTSLRILYP-VSLQAQTRYFPPLLQAPPELLGQLCHFNE 1006
              R    MT  L    ++   P    ++   +S       F  + Q  P    QL  F  
Sbjct: 920  QQR---WMTKLLGYDYEILYTPGKQNVVADALSRVDHLAMFQSISQCQPLFFEQLQRFYA 976

Query: 1005 THSVGQQLLCKFQQQSCPN--FAVHSGLLHFRGHLFIPLETRPRALLIT*FHASPLDGHY 832
            TH VG  L  KFQ  S P+  F++  G+L++R  +F+P+ET  R  ++  FH SPL GH 
Sbjct: 977  THPVGVTLFHKFQHLSPPSTVFSIKQGILYYRDRIFVPMETGLRPSILQEFHDSPLAGHS 1036

Query: 831  GIRGTVARLANAFSWPHIDTDVRLAIQSCFLCEFHKPSNWKSFGPLQAFPIPQQVWEDLS 652
            G+RGT+ARL + F+WP++  DV+  I++C  C+  K S  K+ G LQ  PIP  VW D+S
Sbjct: 1037 GVRGTIARLTSVFAWPNLTKDVKGYIKACLTCQQSKYSTQKTPGLLQPLPIPSDVWRDIS 1096

Query: 651  RDFITHMPAANDKTVVWVIVDHLTKFAYFIVLXXXXXXXXXXXXXIAEIYCQHHMPKTIV 472
             DFITH+P +  KTV+WVI+D LTKFA+FI L             + EI+  H  P TIV
Sbjct: 1097 MDFITHLPPSKGKTVIWVIIDRLTKFAHFIGLPTGFSAATIAPIFMTEIHRLHGFPATIV 1156

Query: 471  SDHDKIFVSKFWREMVLLSGTTLAYNSACH 382
            SD D++F+SKFW E+  LSGT L+++SA H
Sbjct: 1157 SDRDRVFISKFWTELFRLSGTKLSFSSAYH 1186



 Score =  123 bits (309), Expect(2) = 1e-90
 Identities = 62/116 (53%), Positives = 81/116 (69%)
 Frame = -3

Query: 376  SD*QTKVINYILKTYLRCFVSDSPCH*VLFLALVGLWYNSSY*LALHMSPFQALYGRRPP 197
            +D QT+V N  L+TYLRCFV+DSP +   +L L   WYN+SY  AL MSPF+ALYGR PP
Sbjct: 1189 TDGQTEVTNRTLETYLRCFVTDSPQNWFAYLHLAEYWYNTSYHSALKMSPFEALYGRAPP 1248

Query: 196  SIRDYVFGSTSMGFLDDSLVSRKQMLCLILDNLALAQVCMKSQYGSHRRDGSFNVG 29
            ++R Y+ GS+ +  +DD+L  R+Q L LI +NL  AQ  M+SQ  +HR D SF VG
Sbjct: 1249 NLRTYITGSSDVAAVDDTLAQRQQHLSLIRENLTYAQTRMRSQANTHRLDRSFQVG 1304



 Score = 73.2 bits (178), Expect = 8e-10
 Identities = 48/122 (39%), Positives = 69/122 (56%), Gaps = 5/122 (4%)
 Frame = -3

Query: 1444 LLEFSATFDVTTDASGAAIDVVLLQDSHPL-----HISIRNFVPNASRVHV*MRNVCHHR 1280
            L  F   FDVTTDASG AI  VL Q SHP+      + +R  V +A    +        +
Sbjct: 829  LPNFLEIFDVTTDASGIAIGAVLSQHSHPIAFFSRKLCLRMQVASAYDREMYAITEAVRK 888

Query: 1279 SKKVVPLPPWSSFSYLH*SMYPFLSQTIQTPAKHKWLTKLLMYDYEIIHTSGRTNIVADS 1100
             ++ +    +  F+    S+   L Q IQTP++ +W+TKLL YDYEI++T G+ N+VAD+
Sbjct: 889  WRQYLLGRHFRIFTDQK-SLKGMLGQIIQTPSQQRWMTKLLGYDYEILYTPGKQNVVADA 947

Query: 1099 LS 1094
            LS
Sbjct: 948  LS 949


>gb|PNY06477.1| hypothetical protein L195_g002943, partial [Trifolium pratense]
          Length = 1336

 Score =  240 bits (613), Expect(2) = 1e-90
 Identities = 141/330 (42%), Positives = 190/330 (57%), Gaps = 7/330 (2%)
 Frame = -1

Query: 1350 FQ*EILSRMQAESMYECEMYAIT-GQKKWCHYLLGRHFRIFTDQCILSYHRLYKHRQNTN 1174
            F  ++  RMQ  S Y+ EMYAIT   +KW  YLLGRHFRIFTDQ  L    L +  Q  +
Sbjct: 861  FSRKLCLRMQVASAYDREMYAITEAVRKWRQYLLGRHFRIFTDQKSLK-GMLGQIIQTPS 919

Query: 1173 G*RSY*CMTMKLFIPQDV---PTSLRILYP-VSLQAQTRYFPPLLQAPPELLGQLCHFNE 1006
              R    MT  L    ++   P    ++   +S       F  + Q  P    QL  F  
Sbjct: 920  QQR---WMTKLLGYDYEILYTPGKQNVVADALSRVDHLAMFQSISQCQPLFFEQLQRFYA 976

Query: 1005 THSVGQQLLCKFQQQSCPN--FAVHSGLLHFRGHLFIPLETRPRALLIT*FHASPLDGHY 832
            TH VG  L  KFQ  S P+  F++  G+L++R  +F+P+ET  R  ++  FH SPL GH 
Sbjct: 977  THPVGVTLFHKFQHLSPPSTVFSIKQGILYYRDRIFVPMETGLRPSILQEFHDSPLAGHS 1036

Query: 831  GIRGTVARLANAFSWPHIDTDVRLAIQSCFLCEFHKPSNWKSFGPLQAFPIPQQVWEDLS 652
            G+RGT+ARL + F+WP++  DV+  I++C  C+  K S  K+ G LQ  PIP  VW D+S
Sbjct: 1037 GVRGTIARLTSVFAWPNLTKDVKGYIKACLTCQQSKYSTQKTPGLLQPLPIPSDVWRDIS 1096

Query: 651  RDFITHMPAANDKTVVWVIVDHLTKFAYFIVLXXXXXXXXXXXXXIAEIYCQHHMPKTIV 472
             DFITH+P +  KTV+WVI+D LTKFA+FI L             + EI+  H  P TIV
Sbjct: 1097 MDFITHLPPSKGKTVIWVIIDRLTKFAHFIGLPTGFSAATIAPIFMTEIHRLHGFPATIV 1156

Query: 471  SDHDKIFVSKFWREMVLLSGTTLAYNSACH 382
            SD D++F+SKFW E+  LSGT L+++SA H
Sbjct: 1157 SDRDRVFISKFWTELFRLSGTKLSFSSAYH 1186



 Score =  123 bits (309), Expect(2) = 1e-90
 Identities = 62/116 (53%), Positives = 81/116 (69%)
 Frame = -3

Query: 376  SD*QTKVINYILKTYLRCFVSDSPCH*VLFLALVGLWYNSSY*LALHMSPFQALYGRRPP 197
            +D QT+V N  L+TYLRCFV+DSP +   +L L   WYN+SY  AL MSPF+ALYGR PP
Sbjct: 1189 TDGQTEVTNRTLETYLRCFVTDSPQNWFAYLHLAEYWYNTSYHSALKMSPFEALYGRAPP 1248

Query: 196  SIRDYVFGSTSMGFLDDSLVSRKQMLCLILDNLALAQVCMKSQYGSHRRDGSFNVG 29
            ++R Y+ GS+ +  +DD+L  R+Q L LI +NL  AQ  M+SQ  +HR D SF VG
Sbjct: 1249 NLRTYITGSSDVAAVDDTLAQRQQHLSLIRENLTYAQTRMRSQANTHRLDRSFQVG 1304



 Score = 73.2 bits (178), Expect = 8e-10
 Identities = 48/122 (39%), Positives = 69/122 (56%), Gaps = 5/122 (4%)
 Frame = -3

Query: 1444 LLEFSATFDVTTDASGAAIDVVLLQDSHPL-----HISIRNFVPNASRVHV*MRNVCHHR 1280
            L  F   FDVTTDASG AI  VL Q SHP+      + +R  V +A    +        +
Sbjct: 829  LPNFLEIFDVTTDASGIAIGAVLSQHSHPIAFFSRKLCLRMQVASAYDREMYAITEAVRK 888

Query: 1279 SKKVVPLPPWSSFSYLH*SMYPFLSQTIQTPAKHKWLTKLLMYDYEIIHTSGRTNIVADS 1100
             ++ +    +  F+    S+   L Q IQTP++ +W+TKLL YDYEI++T G+ N+VAD+
Sbjct: 889  WRQYLLGRHFRIFTDQK-SLKGMLGQIIQTPSQQRWMTKLLGYDYEILYTPGKQNVVADA 947

Query: 1099 LS 1094
            LS
Sbjct: 948  LS 949


>gb|PNY17448.1| hypothetical protein L195_g014191 [Trifolium pratense]
          Length = 1530

 Score =  201 bits (510), Expect(2) = 2e-75
 Identities = 130/371 (35%), Positives = 190/371 (51%), Gaps = 23/371 (6%)
 Frame = -1

Query: 1425 HLMSPQMRQVQQSMSFYYRTPTPCIFQ*EILSRMQAESMYECEMYAITGQ-KKWCHYLLG 1249
            H +   + Q  + ++F+ +  +P         R+ A S Y  E+YA+T   KKW  YLLG
Sbjct: 890  HAVGAVLSQKSKPLAFFSKKLSP---------RLSASSTYIRELYALTEAIKKWRQYLLG 940

Query: 1248 RHFRIFTDQCILSYHRLYKHRQNTNG*RSY*CMTMKLFIPQDVPTSLRIL---------- 1099
              F+IFTD      H+  K             MT  +  P+      ++L          
Sbjct: 941  SPFKIFTD------HKSLKS-----------LMTQTIQTPEQQKWLTKLLGYTYEIHYKP 983

Query: 1098 --YPVSLQAQTRYFPPLLQAP--------PELLGQLCHFNETHSVGQQLLCKF--QQQSC 955
                V   A +R   P ++            L+ QL  F  T++ G +L+ K     +  
Sbjct: 984  GKENVVADALSRVEEPPIEGECVLITFPISSLITQLQVFFSTNTAGTKLMQKAVNDPKMQ 1043

Query: 954  PNFAVHSGLLHFRGHLFIPLETRPRALLIT*FHASPLDGHYGIRGTVARLANAFSWPHID 775
              F +  GLL+F+  LFIP+E      L+  FH+SP  GH GI+ T+ARL+  F WP + 
Sbjct: 1044 QKFQIKGGLLYFKNRLFIPIEADLITPLLQEFHSSPAGGHSGIQATLARLSANFYWPGMH 1103

Query: 774  TDVRLAIQSCFLCEFHKPSNWKSFGPLQAFPIPQQVWEDLSRDFITHMPAANDKTVVWVI 595
             DV+  + +C +C+ +K S    +G LQ  P+PQQVWED+S DFITH+P  ++++ +WVI
Sbjct: 1104 KDVKHFVNACSVCQHNKYSTQPPYGLLQPLPLPQQVWEDISMDFITHLPPTHNRSCIWVI 1163

Query: 594  VDHLTKFAYFIVLXXXXXXXXXXXXXIAEIYCQHHMPKTIVSDHDKIFVSKFWREMVLLS 415
            VD LTKFA+FI L             IAEIY     PKTIVSD D++FVS+FWR +    
Sbjct: 1164 VDRLTKFAHFIALPTSFTAASLAPIFIAEIYRLPGAPKTIVSDRDRVFVSQFWRALFHHL 1223

Query: 414  GTTLAYNSACH 382
            GT+LA++S+ H
Sbjct: 1224 GTSLAFSSSYH 1234



 Score =  112 bits (280), Expect(2) = 2e-75
 Identities = 57/117 (48%), Positives = 81/117 (69%)
 Frame = -3

Query: 376  SD*QTKVINYILKTYLRCFVSDSPCH*VLFLALVGLWYNSSY*LALHMSPFQALYGRRPP 197
            SD QT+V+N  L+TYLRCFVSD P   + FLAL   WYN+S+  A+ MSPF+ALYGR+PP
Sbjct: 1237 SDGQTEVLNRCLETYLRCFVSDEPQLWLRFLALAEFWYNTSFHSAIGMSPFEALYGRKPP 1296

Query: 196  SIRDYVFGSTSMGFLDDSLVSRKQMLCLILDNLALAQVCMKSQYGSHRRDGSFNVGR 26
            ++  Y  G++ +  LD+ L  + Q+L ++ +NLA AQ  M +Q   HR+D +F VG+
Sbjct: 1297 NLVHYTPGTSKINNLDELLTQKTQILKVLKENLAKAQNRMATQANRHRQDHNFEVGQ 1353



 Score = 73.9 bits (180), Expect = 5e-10
 Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 5/122 (4%)
 Frame = -3

Query: 1444 LLEFSATFDVTTDASGAAIDVVLLQDSHPLHISIRNFVPNASRVHV*MRNV-----CHHR 1280
            L +FS  F+VTTDAS  A+  VL Q S PL    +   P  S     +R +        +
Sbjct: 874  LPDFSLPFEVTTDASIHAVGAVLSQKSKPLAFFSKKLSPRLSASSTYIRELYALTEAIKK 933

Query: 1279 SKKVVPLPPWSSFSYLH*SMYPFLSQTIQTPAKHKWLTKLLMYDYEIIHTSGRTNIVADS 1100
             ++ +   P+  F+  H S+   ++QTIQTP + KWLTKLL Y YEI +  G+ N+VAD+
Sbjct: 934  WRQYLLGSPFKIFTD-HKSLKSLMTQTIQTPEQQKWLTKLLGYTYEIHYKPGKENVVADA 992

Query: 1099 LS 1094
            LS
Sbjct: 993  LS 994


>gb|PNY00428.1| hypothetical protein L195_g023708, partial [Trifolium pratense]
          Length = 1181

 Score =  206 bits (524), Expect(2) = 2e-74
 Identities = 130/350 (37%), Positives = 183/350 (52%), Gaps = 27/350 (7%)
 Frame = -1

Query: 1350 FQ*EILSRMQAESMYECEMYAITGQ-KKWCHYLLGRHFRIFTDQCILSYHRLYKHRQNTN 1174
            F  ++ +R+ A S Y  E+YA+T   KKW  YLLG  F+IFTD      H+  K      
Sbjct: 563  FSKKLSARLSASSTYVRELYALTEAIKKWRQYLLGSPFKIFTD------HKSLKS----- 611

Query: 1173 G*RSY*CMTMKLFIPQDVPTSLRIL--------YPVSLQAQTRYFPPLLQAPPE------ 1036
                   MT  +  P+      ++L         P            + ++P E      
Sbjct: 612  ------LMTQTIQTPEQQKWLTKLLGYTYEIHYKPGKENVVADALSRVQESPMEGECALL 665

Query: 1035 ------LLGQLCHFNETHSVGQQLLCK------FQQQSCPNFAVHSGLLHFRGHLFIPLE 892
                  L+ QL  F  ++  G +L+ K       QQQ    F V +GLLHF+  LFIP E
Sbjct: 666  TFPISTLISQLQSFFSSNPAGTKLMNKAVTDPKMQQQ----FQVKAGLLHFQNRLFIPFE 721

Query: 891  TRPRALLIT*FHASPLDGHYGIRGTVARLANAFSWPHIDTDVRLAIQSCFLCEFHKPSNW 712
            +     L+  FH+SP  GH GI+ T+ARL+  F WP +  DV+  + +C +C+ +K S  
Sbjct: 722  SGLTTSLLQEFHSSPTGGHSGIQATLARLSATFYWPGMYKDVKQFVNACSVCQHNKYSTQ 781

Query: 711  KSFGPLQAFPIPQQVWEDLSRDFITHMPAANDKTVVWVIVDHLTKFAYFIVLXXXXXXXX 532
              +G LQ  P+PQQVWED+S DFITH+P  ++++ +WVIVD LTKFA+FI L        
Sbjct: 782  SPYGLLQPLPLPQQVWEDISMDFITHLPMTHNRSCIWVIVDRLTKFAHFIALPGSFTAAS 841

Query: 531  XXXXXIAEIYCQHHMPKTIVSDHDKIFVSKFWREMVLLSGTTLAYNSACH 382
                 I EIY  H  PKTIVSD D++FVS+FWR +    GT+LA++S+ H
Sbjct: 842  LAPIFITEIYRLHGAPKTIVSDRDRVFVSQFWRALFHHLGTSLAFSSSYH 891



 Score =  103 bits (258), Expect(2) = 2e-74
 Identities = 53/117 (45%), Positives = 78/117 (66%)
 Frame = -3

Query: 376  SD*QTKVINYILKTYLRCFVSDSPCH*VLFLALVGLWYNSSY*LALHMSPFQALYGRRPP 197
            SD QT+V+N  L+TYLRCFVSD P   + FLAL   WYN+S+  A+ M+PF+ALYGR+PP
Sbjct: 894  SDGQTEVLNRCLETYLRCFVSDEPRLWLRFLALAEFWYNTSFHTAIGMTPFEALYGRKPP 953

Query: 196  SIRDYVFGSTSMGFLDDSLVSRKQMLCLILDNLALAQVCMKSQYGSHRRDGSFNVGR 26
            ++  Y  G++ +  LD+ L  +  +L ++ +NL  A+  M  Q   HR+D +F VG+
Sbjct: 954  TLVHYTPGTSKIESLDELLTQKTLVLKVLKENLVKARNRMIIQANQHRQDRNFEVGQ 1010



 Score = 71.6 bits (174), Expect = 2e-09
 Identities = 47/127 (37%), Positives = 69/127 (54%), Gaps = 5/127 (3%)
 Frame = -3

Query: 1444 LLEFSATFDVTTDASGAAIDVVLLQDSHPLHISIRNFVPNASRVHV*MRNV-----CHHR 1280
            L  F+  F+VTTDAS  A+  VL Q+S PL    +      S     +R +        +
Sbjct: 531  LPNFTLPFEVTTDASLTAVGAVLSQNSKPLAFFSKKLSARLSASSTYVRELYALTEAIKK 590

Query: 1279 SKKVVPLPPWSSFSYLH*SMYPFLSQTIQTPAKHKWLTKLLMYDYEIIHTSGRTNIVADS 1100
             ++ +   P+  F+  H S+   ++QTIQTP + KWLTKLL Y YEI +  G+ N+VAD+
Sbjct: 591  WRQYLLGSPFKIFTD-HKSLKSLMTQTIQTPEQQKWLTKLLGYTYEIHYKPGKENVVADA 649

Query: 1099 LSCISPS 1079
            LS +  S
Sbjct: 650  LSRVQES 656


>gb|KYP65719.1| Transposon Ty3-G Gag-Pol polyprotein [Cajanus cajan]
          Length = 625

 Score =  209 bits (533), Expect(2) = 9e-72
 Identities = 124/327 (37%), Positives = 182/327 (55%), Gaps = 4/327 (1%)
 Frame = -1

Query: 1350 FQ*EILSRMQAESMYECEMYAITGQ-KKWCHYLLGRHFRIFTDQCILSYHRLYKHRQNTN 1174
            F  ++ S++Q  S Y  +MYAIT   KKW  YL+G HFRIFTDQ  L +      +    
Sbjct: 51   FSKKLCSKLQVASAYARKMYAITESIKKWRQYLIGHHFRIFTDQQSLRHMFSQVFQTPEK 110

Query: 1173 G*RSY*CMTMKLFIPQDVPTSLRILYPVSLQAQTRYFPPLLQAPP-ELLGQLCHFNETHS 997
              +      ++ F       S  ILY      Q R    L + P  +++ QL +F  TH+
Sbjct: 111  PDQQKWAAKLQGF-------SYEILYKPG--KQNRVTDALSRVPDTDIVEQLKNFFSTHA 161

Query: 996  VGQQLLCKFQQ--QSCPNFAVHSGLLHFRGHLFIPLETRPRALLIT*FHASPLDGHYGIR 823
             G  L+ +      + P+F V  GL++F+  LFIP     R+ ++  FHASP+ GH G++
Sbjct: 162  NGLALVRQLSSVTHATPHFTVSHGLVYFKNRLFIPEIPSLRSSILHEFHASPMAGHSGVK 221

Query: 822  GTVARLANAFSWPHIDTDVRLAIQSCFLCEFHKPSNWKSFGPLQAFPIPQQVWEDLSRDF 643
             T+ARLA +F+WP +  DV+  ++SC  C+ +K    K  G LQ  PIP +VW D+S DF
Sbjct: 222  ATLARLAASFAWPTMAKDVKAFVRSCSTCQHNKSVASKKQGLLQPLPIPAKVWNDISMDF 281

Query: 642  ITHMPAANDKTVVWVIVDHLTKFAYFIVLXXXXXXXXXXXXXIAEIYCQHHMPKTIVSDH 463
            +TH+ ++   TV+WV+VD L+K+A+FI L             + EI   H  P+TIVS+ 
Sbjct: 282  LTHLSSSVGHTVIWVVVDRLSKYAHFIALPTHFNASSLASQFMIEIVRLHGFPRTIVSNR 341

Query: 462  DKIFVSKFWREMVLLSGTTLAYNSACH 382
            DK+F+S FWRE+  L GT L ++SA H
Sbjct: 342  DKVFLSSFWRELFRLHGTKLCFSSAYH 368



 Score = 91.7 bits (226), Expect(2) = 9e-72
 Identities = 48/113 (42%), Positives = 69/113 (61%)
 Frame = -3

Query: 373 D*QTKVINYILKTYLRCFVSDSPCH*VLFLALVGLWYNSSY*LALHMSPFQALYGRRPPS 194
           D QT+V+N +L  YLRCF  D P H  LFL L   WYN++   AL M+PFQALYGR PP+
Sbjct: 372 DGQTEVVNRVLTAYLRCFAGDFPRHWYLFLHLAEFWYNTTLQSALGMTPFQALYGRAPPA 431

Query: 193 IRDYVFGSTSMGFLDDSLVSRKQMLCLILDNLALAQVCMKSQYGSHRRDGSFN 35
             D+V   T++  +   L  +K ++ ++ +NL  A+  M +Q    R+D +FN
Sbjct: 432 FPDFVSPPTTVVSVASLLQQKKMIMHVVRNNLRHARQRMVAQANKSRKDITFN 484


>dbj|GAU18789.1| hypothetical protein TSUD_80780 [Trifolium subterraneum]
          Length = 1792

 Score =  196 bits (497), Expect(2) = 3e-70
 Identities = 125/335 (37%), Positives = 175/335 (52%), Gaps = 12/335 (3%)
 Frame = -1

Query: 1350 FQ*EILSRMQAESMYECEMYAIT-GQKKWCHYLLGRHFRIFTDQCILSYHRLYKHRQNTN 1174
            F  ++ +RM+A S+Y  EM+AIT   KKW  YLLGRHF IFTDQ  L    + +  Q T 
Sbjct: 1075 FSKKMCNRMKASSVYVREMFAITEAVKKWRQYLLGRHFHIFTDQKSLK-SLMVQTIQTTE 1133

Query: 1173 G*RSY*CMTMKL----FIPQDVPTSLRILYPVSLQAQTRYFPPLL-----QAPPELLGQL 1021
              +     T KL    F     P    ++     +  +   P +L        P LL  L
Sbjct: 1134 QQK----WTAKLQGFSFEIFYKPGKTNLIADALSRQHSDPEPAVLCMTISSTVPTLLSSL 1189

Query: 1020 CHFNETHSVGQQLLCKFQQQSCPN--FAVHSGLLHFRGHLFIPLETRPRALLIT*FHASP 847
              +  T   GQ L+ +  + +  N  ++   GL++FR  ++IP     R  +I  FH++P
Sbjct: 1190 QQYYSTDKDGQVLVSQLAKATNQNTSYSFRGGLVYFRNKIYIPKNLELRMAIIKEFHSTP 1249

Query: 846  LDGHYGIRGTVARLANAFSWPHIDTDVRLAIQSCFLCEFHKPSNWKSFGPLQAFPIPQQV 667
              GH G++ T+ARLA +F WP I  DV+  IQ C +C+ +K    K  G LQ   IP  V
Sbjct: 1250 TAGHSGLQPTLARLAASFLWPDIYRDVKQFIQQCAVCQQNKYMPQKKQGLLQPLDIPANV 1309

Query: 666  WEDLSRDFITHMPAANDKTVVWVIVDHLTKFAYFIVLXXXXXXXXXXXXXIAEIYCQHHM 487
            WED++ DFITH+P +   TV+WV+ D LTK+ +FI L               EI   H  
Sbjct: 1310 WEDITMDFITHLPNSFGHTVIWVVCDRLTKYVHFIGLPTRFTAKDIATRFSTEICRLHGP 1369

Query: 486  PKTIVSDHDKIFVSKFWREMVLLSGTTLAYNSACH 382
            PKTI+SD D +F+S FW+E   + GTTL Y+SA H
Sbjct: 1370 PKTIISDRDPLFLSNFWKEFFRVQGTTLKYSSAYH 1404



 Score =  100 bits (249), Expect(2) = 3e-70
 Identities = 50/116 (43%), Positives = 77/116 (66%)
 Frame = -3

Query: 376  SD*QTKVINYILKTYLRCFVSDSPCH*VLFLALVGLWYNSSY*LALHMSPFQALYGRRPP 197
            +D QT+V+N  L+TYLRCF S++P     FL L   W+NSS+  A+ MSPF+ALYGR PP
Sbjct: 1407 TDGQTEVVNRTLETYLRCFASENPRKWFKFLHLAEYWHNSSFHSAIKMSPFEALYGRSPP 1466

Query: 196  SIRDYVFGSTSMGFLDDSLVSRKQMLCLILDNLALAQVCMKSQYGSHRRDGSFNVG 29
            +I+++V GS++   ++  L  R+Q+L ++ +NL  ++  M +Q    RRD +F  G
Sbjct: 1467 TIQNFVNGSSNSSDIEQKLGERQQILTILKENLKRSRQKMAAQANKKRRDCTFTAG 1522


>gb|PNX92586.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
          Length = 1585

 Score =  191 bits (486), Expect(2) = 3e-69
 Identities = 119/335 (35%), Positives = 178/335 (53%), Gaps = 12/335 (3%)
 Frame = -1

Query: 1350 FQ*EILSRMQAESMYECEMYAIT-GQKKWCHYLLGRHFRIFTDQCILSYHRLYKHRQNTN 1174
            F  ++ +RMQ+ S+Y  EM+AIT   KKW  YL+GRHF IFTDQ  L    L +  Q T 
Sbjct: 823  FSKKMCNRMQSSSVYVREMFAITEAVKKWRQYLIGRHFHIFTDQKSLK-SLLVQTIQTTE 881

Query: 1173 G*RSY*CMTMKL--------FIPQDVPTSLRILYPVSLQAQTR-YFPPLLQAPPELLGQL 1021
              +     T KL        + P +       L   +  A++      +    P LL  L
Sbjct: 882  QQK----WTSKLQGFSFDIFYKPGNTNLVADALSRKNTDAESAGLLLSVSSTVPVLLSTL 937

Query: 1020 CHFNETHSVGQQLLCKF--QQQSCPNFAVHSGLLHFRGHLFIPLETRPRALLIT*FHASP 847
              + +  + GQ L+ K    ++S   ++   GL++F+  LF+P     R  ++  +H++P
Sbjct: 938  REYYKKDTKGQDLVFKIVTAKESTQQYSFKEGLVYFKNRLFLPEGNNLRTTILNEYHSTP 997

Query: 846  LDGHYGIRGTVARLANAFSWPHIDTDVRLAIQSCFLCEFHKPSNWKSFGPLQAFPIPQQV 667
              GH  ++ T+ARL+ +F WP I  DV+  IQ C +C+ +K    K  G LQ   IP++V
Sbjct: 998  TAGHSSLQPTLARLSASFLWPGIYRDVKQFIQQCLVCQQNKYMPTKKQGLLQPLEIPERV 1057

Query: 666  WEDLSRDFITHMPAANDKTVVWVIVDHLTKFAYFIVLXXXXXXXXXXXXXIAEIYCQHHM 487
            WE+++ DFITH+P +   TV+WVI D LTK+ +FI L               EI   H +
Sbjct: 1058 WEEITMDFITHLPNSFGHTVIWVICDRLTKYVHFIGLPSRFTAKDIAMRFSTEICRLHGL 1117

Query: 486  PKTIVSDHDKIFVSKFWREMVLLSGTTLAYNSACH 382
            PK+I+SD D +F+S FW+E+    GTTL Y+SA H
Sbjct: 1118 PKSIISDRDPLFLSNFWKELFRAQGTTLKYSSAYH 1152



 Score =  101 bits (251), Expect(2) = 3e-69
 Identities = 49/116 (42%), Positives = 77/116 (66%)
 Frame = -3

Query: 376  SD*QTKVINYILKTYLRCFVSDSPCH*VLFLALVGLWYNSSY*LALHMSPFQALYGRRPP 197
            +D QT+V+N  L+TYLRCF S+ P     FL +   W+NSS+  A+ MSPF+ALYGR PP
Sbjct: 1155 TDGQTEVVNRSLETYLRCFTSEHPRKWFKFLHMAEYWHNSSFHSAIKMSPFEALYGRSPP 1214

Query: 196  SIRDYVFGSTSMGFLDDSLVSRKQMLCLILDNLALAQVCMKSQYGSHRRDGSFNVG 29
            S+ DY+ GS+S   ++ +L  R++++ ++ +NL  ++  M++Q    RRD +F  G
Sbjct: 1215 SVLDYIQGSSSNSDIEQTLAERQKIITMLKENLKRSRQKMEAQANKKRRDCTFKPG 1270



 Score = 63.9 bits (154), Expect = 6e-07
 Identities = 52/154 (33%), Positives = 78/154 (50%), Gaps = 12/154 (7%)
 Frame = -3

Query: 1444 LLEFSATFDVTTDASGAAIDVVLLQDSHPLHISIRNFV--PNASRVHV*MRNVCHHRSKK 1271
            L +FS TF V TDAS  AI  VL QD HP+    +       +S V+V          KK
Sbjct: 791  LPDFSKTFVVETDASSVAIGAVLAQDGHPIAFFSKKMCNRMQSSSVYVREMFAITEAVKK 850

Query: 1270 VVPLPPWSSF---SYLH-----*SMYPFLSQTIQTPAKHKWLTKLLMYDYEIIHTSGRTN 1115
                  W  +    + H      S+   L QTIQT  + KW +KL  + ++I +  G TN
Sbjct: 851  ------WRQYLIGRHFHIFTDQKSLKSLLVQTIQTTEQQKWTSKLQGFSFDIFYKPGNTN 904

Query: 1114 IVADSLSCISPSSDT--VLSSITASTPRVVRSTL 1019
            +VAD+LS  +  +++  +L S++++ P V+ STL
Sbjct: 905  LVADALSRKNTDAESAGLLLSVSSTVP-VLLSTL 937


>gb|PNY13776.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 1888

 Score =  188 bits (478), Expect(2) = 3e-68
 Identities = 117/353 (33%), Positives = 176/353 (49%), Gaps = 30/353 (8%)
 Frame = -1

Query: 1350 FQ*EILSRMQAESMYECEMYAIT-GQKKWCHYLLGRHFRIFTDQCILSYHRLYKHRQNTN 1174
            F  ++ +RM+A S+Y  EM+AIT   KKW  YL+GRHF IFTDQ                
Sbjct: 1127 FSKKMCNRMRASSVYVREMFAITEAVKKWRQYLIGRHFHIFTDQ---------------- 1170

Query: 1173 G*RSY*CMTMKLFIPQDVPTSLRILYPVSLQAQTR--YFPP------------------- 1057
                    ++K  + Q + T+ +  +   LQ  +   ++ P                   
Sbjct: 1171 -------KSLKSLLVQTIQTAEQQKWTSKLQGFSFDIFYKPGKTNLVADALSRKHTDADS 1223

Query: 1056 ------LLQAPPELLGQLCHFNETHSVGQQLLCKF--QQQSCPNFAVHSGLLHFRGHLFI 901
                  +    P L+  L  + +    GQ L+ K    ++    +    GL++F+  L+I
Sbjct: 1224 EGLLLSISSTVPVLISTLRQYYKRDKNGQDLVSKIITAKEQTQQYIFKEGLVYFKNKLYI 1283

Query: 900  PLETRPRALLIT*FHASPLDGHYGIRGTVARLANAFSWPHIDTDVRLAIQSCFLCEFHKP 721
            P +T  R  ++  FH +P  GH G++ T+ARL+ +F WP I  DV+  IQ C +C+ +K 
Sbjct: 1284 PEDTDLRTSILKEFHTTPTAGHSGLQPTLARLSASFLWPGIYRDVKQFIQQCTVCQQNKY 1343

Query: 720  SNWKSFGPLQAFPIPQQVWEDLSRDFITHMPAANDKTVVWVIVDHLTKFAYFIVLXXXXX 541
               K  G LQ   IP++VWE+++ DFITH+P +   TVVWVI D LTK+ +F+ L     
Sbjct: 1344 MPTKKQGLLQPLDIPEKVWEEITMDFITHLPNSFGHTVVWVICDRLTKYVHFVGLPSRFT 1403

Query: 540  XXXXXXXXIAEIYCQHHMPKTIVSDHDKIFVSKFWREMVLLSGTTLAYNSACH 382
                      EI   H +PK+IVSD D +F+S FW+E+    GTTL Y+SA H
Sbjct: 1404 AKDIAMRFSTEICRLHGLPKSIVSDRDPLFLSNFWKELFRAQGTTLKYSSAYH 1456



 Score =  100 bits (250), Expect(2) = 3e-68
 Identities = 51/116 (43%), Positives = 76/116 (65%)
 Frame = -3

Query: 376  SD*QTKVINYILKTYLRCFVSDSPCH*VLFLALVGLWYNSSY*LALHMSPFQALYGRRPP 197
            +D QT+V+N  L+TYLRCF S+ P     FL L   W+NS++  A+ MSPF+ALYGR PP
Sbjct: 1459 TDGQTEVVNRSLETYLRCFTSEQPRKWYKFLHLAEYWHNSAFHSAIKMSPFEALYGRSPP 1518

Query: 196  SIRDYVFGSTSMGFLDDSLVSRKQMLCLILDNLALAQVCMKSQYGSHRRDGSFNVG 29
            SI DYV GS+S   ++ +L  R++++  + +NL  ++  M++Q    RRD +F  G
Sbjct: 1519 SILDYVQGSSSNSDIEQTLAERQKIITTLKENLKRSRQKMEAQANKKRRDCTFEPG 1574



 Score = 66.6 bits (161), Expect = 9e-08
 Identities = 55/154 (35%), Positives = 78/154 (50%), Gaps = 12/154 (7%)
 Frame = -3

Query: 1444 LLEFSATFDVTTDASGAAIDVVLLQDSHPLHISIRNFVPN--ASRVHV*MRNVCHHRSKK 1271
            L +FS TF V TDAS  AI  VL QD HP+    +       AS V+V          KK
Sbjct: 1095 LPDFSKTFVVETDASSVAIGAVLAQDGHPIAFFSKKMCNRMRASSVYVREMFAITEAVKK 1154

Query: 1270 VVPLPPWSSF---SYLH*-----SMYPFLSQTIQTPAKHKWLTKLLMYDYEIIHTSGRTN 1115
                  W  +    + H      S+   L QTIQT  + KW +KL  + ++I +  G+TN
Sbjct: 1155 ------WRQYLIGRHFHIFTDQKSLKSLLVQTIQTAEQQKWTSKLQGFSFDIFYKPGKTN 1208

Query: 1114 IVADSLSCISPSSDT--VLSSITASTPRVVRSTL 1019
            +VAD+LS     +D+  +L SI+++ P V+ STL
Sbjct: 1209 LVADALSRKHTDADSEGLLLSISSTVP-VLISTL 1241


>gb|PNX96526.1| transposon Tf2-1 polyprotein, partial [Trifolium pratense]
          Length = 1199

 Score =  193 bits (491), Expect(2) = 5e-68
 Identities = 118/328 (35%), Positives = 168/328 (51%), Gaps = 5/328 (1%)
 Frame = -1

Query: 1350 FQ*EILSRMQAESMYECEMYAIT-GQKKWCHYLLGRHFRIFTDQCILS--YHRLYKHRQN 1180
            F  ++  RMQA S+Y  EMYAIT   KKW  YL+GRHF IFTDQ  L     +  +  + 
Sbjct: 305  FSKKMCPRMQAASVYVREMYAITEAVKKWRQYLIGRHFHIFTDQKSLKNLLVQTIQTPEQ 364

Query: 1179 TNG*RSY*CMTMKLFIPQDVPTSLRILYPVSLQAQTRYFPPLLQAPPELLGQLCHFNETH 1000
                      + ++F        +          +      +    P +L  L  F    
Sbjct: 365  QKWASKLQGFSFEIFYKPGKANQVADALSRRHTEEEAVLFSISSPVPTILNNLREFYMKD 424

Query: 999  SVGQQLLCKFQQ--QSCPNFAVHSGLLHFRGHLFIPLETRPRALLIT*FHASPLDGHYGI 826
              GQ L+ K +   Q   +F +  GLL+F+  +++P     R  ++  +H +P  GH G+
Sbjct: 425  KEGQTLVQKVETDTQMQQSFRLKDGLLYFKDKIYLPDIPDLRKTILREYHCTPTAGHSGV 484

Query: 825  RGTVARLANAFSWPHIDTDVRLAIQSCFLCEFHKPSNWKSFGPLQAFPIPQQVWEDLSRD 646
            + T+AR++ +F WP I  DV   +Q+C  C+ +K    K  G LQ   IP+QVWEDLS D
Sbjct: 485  QPTLARISASFLWPGIYKDVTQLVQTCATCQQNKYMPKKKQGLLQPLDIPKQVWEDLSMD 544

Query: 645  FITHMPAANDKTVVWVIVDHLTKFAYFIVLXXXXXXXXXXXXXIAEIYCQHHMPKTIVSD 466
            FITH+P +   TV+WVI D LTKF +FI L               E+   H +PK+IVSD
Sbjct: 545  FITHLPQSFGHTVIWVICDRLTKFVHFIALPTKFTAPALASRFSVEVCRLHGIPKSIVSD 604

Query: 465  HDKIFVSKFWREMVLLSGTTLAYNSACH 382
             D +F+S FW+E+  L GTTL Y+SA H
Sbjct: 605  RDPVFLSSFWKELFHLQGTTLKYSSAYH 632



 Score = 95.1 bits (235), Expect(2) = 5e-68
 Identities = 48/116 (41%), Positives = 74/116 (63%)
 Frame = -3

Query: 376 SD*QTKVINYILKTYLRCFVSDSPCH*VLFLALVGLWYNSSY*LALHMSPFQALYGRRPP 197
           +D QT+V+N  L+ YLRCF S++P     +L L   W+N+++  A+ M+PF+ALYGR+PP
Sbjct: 635 TDGQTEVVNRSLEAYLRCFTSENPRQWYKYLHLAEFWHNTAFHSAIKMTPFEALYGRKPP 694

Query: 196 SIRDYVFGSTSMGFLDDSLVSRKQMLCLILDNLALAQVCMKSQYGSHRRDGSFNVG 29
           S+ DYV G T++  LD +L  R+ +L  +  NL  ++  M+ Q    R D +FN G
Sbjct: 695 SLLDYVSGQTNIRDLDTTLQQRQAILDTLKTNLQRSRQQMEIQANKSRTDCTFNCG 750



 Score = 72.0 bits (175), Expect = 2e-09
 Identities = 49/145 (33%), Positives = 72/145 (49%), Gaps = 5/145 (3%)
 Frame = -3

Query: 1444 LLEFSATFDVTTDASGAAIDVVLLQDSHPLHISIRNFVPNASRVHV*MRNVCHHRSKKVV 1265
            L  FS TF V TDAS  AI  VL Q+ HPL    +   P      V +R + +  ++ V 
Sbjct: 273  LPNFSKTFIVETDASAVAIGAVLSQEGHPLAFFSKKMCPRMQAASVYVREM-YAITEAVK 331

Query: 1264 PLPPWSSFSYLH*-----SMYPFLSQTIQTPAKHKWLTKLLMYDYEIIHTSGRTNIVADS 1100
                +    + H      S+   L QTIQTP + KW +KL  + +EI +  G+ N VAD+
Sbjct: 332  KWRQYLIGRHFHIFTDQKSLKNLLVQTIQTPEQQKWASKLQGFSFEIFYKPGKANQVADA 391

Query: 1099 LSCISPSSDTVLSSITASTPRVVRS 1025
            LS      + VL SI++  P ++ +
Sbjct: 392  LSRRHTEEEAVLFSISSPVPTILNN 416


>gb|KYP75124.1| Transposon Ty3-G Gag-Pol polyprotein [Cajanus cajan]
          Length = 1436

 Score =  201 bits (511), Expect(2) = 9e-68
 Identities = 128/338 (37%), Positives = 183/338 (54%), Gaps = 15/338 (4%)
 Frame = -1

Query: 1350 FQ*EILSRMQAESMYECEMYAITGQ-KKWCHYLLGRHFRIFTDQCILSYHRLYKHRQNTN 1174
            F  ++  RMQ+ S+Y  EM+AIT   KKW  Y +G+ FRI TDQ  L +  L      T 
Sbjct: 770  FSKKLCPRMQSASVYAREMFAITESVKKWRQYFIGKPFRILTDQKSLKF--LLSQAIQTP 827

Query: 1173 G*RSY*CMTMKLFIPQDVPTSLRILYP-----VSLQAQTRYFP---PLLQA----PPELL 1030
                +   TMKL        +  I+Y      V   A +R FP   P+ +A     P +L
Sbjct: 828  EQHKW---TMKL-----QGYTFDIIYRPGRDNVVADALSRCFPKPTPVFEALSTSVPTIL 879

Query: 1029 GQLCHFNETHSVGQQLLCKFQQQSCP--NFAVHSGLLHFRGHLFIPLETRPRALLIT*FH 856
              L  + ++ S G+ L+ K+   S    NF    GLL F+  +F+P     R  LI  FH
Sbjct: 880  ASLREYYQSDSAGRALVNKYTSDSAASLNFQFSQGLLMFKDKIFVPAIDGLRQSLIQEFH 939

Query: 855  ASPLDGHYGIRGTVARLANAFSWPHIDTDVRLAIQSCFLCEFHKPSNWKSFGPLQAFPIP 676
            ++P  GH G + ++ARL+ +F WP I  D +  +QSC  C+ +K    K  G LQ  PIP
Sbjct: 940  STPHAGHSGFKPSLARLSASFYWPGIYKDTKKLVQSCLTCQQNKYYPVKHQGLLQPLPIP 999

Query: 675  QQVWEDLSRDFITHMPAANDKTVVWVIVDHLTKFAYFIVLXXXXXXXXXXXXXIAEIYCQ 496
            Q+VW+D+S DFITH+P ++  TV+WVIVD L+KF++F+ L               EI   
Sbjct: 1000 QKVWDDISMDFITHLPNSHGHTVIWVIVDRLSKFSHFLALPTKFTAPDLATRFSVEIVRL 1059

Query: 495  HHMPKTIVSDHDKIFVSKFWREMVLLSGTTLAYNSACH 382
            H +PK+IVSD D++F+S FW+E+  L GT L ++SA H
Sbjct: 1060 HGIPKSIVSDRDRVFLSHFWKELFRLQGTHLRFSSAYH 1097



 Score = 86.7 bits (213), Expect(2) = 9e-68
 Identities = 47/116 (40%), Positives = 68/116 (58%)
 Frame = -3

Query: 376  SD*QTKVINYILKTYLRCFVSDSPCH*VLFLALVGLWYNSSY*LALHMSPFQALYGRRPP 197
            SD QT+V+N  L+ YLRCF +D P     +L L   WYN++   A+ M PFQALYGR+PP
Sbjct: 1100 SDGQTEVVNRSLEAYLRCFTTDHPRRWYRYLHLAEYWYNTTTHSAIGMPPFQALYGRKPP 1159

Query: 196  SIRDYVFGSTSMGFLDDSLVSRKQMLCLILDNLALAQVCMKSQYGSHRRDGSFNVG 29
            S+ D+V  + +      SL  R++++  +  NL   +  M++     RRD SF VG
Sbjct: 1160 SLLDHVPTAPTSSLALVSLQQRQEIMQTLKQNLTRTRQQMEAHANKSRRDVSFEVG 1215



 Score = 75.5 bits (184), Expect = 1e-10
 Identities = 50/151 (33%), Positives = 68/151 (45%), Gaps = 11/151 (7%)
 Frame = -3

Query: 1444 LLEFSATFDVTTDASGAAIDVVLLQDSHPLHISIRNFVPNASRVHV*MRNVC-------- 1289
            L  F   FD+ TDAS  AI  VL Q+ HP+    +   P      V  R +         
Sbjct: 738  LPNFELPFDLETDASSVAIGAVLSQNGHPIAFFSKKLCPRMQSASVYAREMFAITESVKK 797

Query: 1288 ---HHRSKKVVPLPPWSSFSYLH*SMYPFLSQTIQTPAKHKWLTKLLMYDYEIIHTSGRT 1118
               +   K    L    S  +L       LSQ IQTP +HKW  KL  Y ++II+  GR 
Sbjct: 798  WRQYFIGKPFRILTDQKSLKFL-------LSQAIQTPEQHKWTMKLQGYTFDIIYRPGRD 850

Query: 1117 NIVADSLSCISPSSDTVLSSITASTPRVVRS 1025
            N+VAD+LS   P    V  +++ S P ++ S
Sbjct: 851  NVVADALSRCFPKPTPVFEALSTSVPTILAS 881


>ref|XP_019450597.1| PREDICTED: uncharacterized protein LOC109352871 [Lupinus
            angustifolius]
          Length = 1707

 Score =  189 bits (481), Expect(2) = 1e-67
 Identities = 118/335 (35%), Positives = 179/335 (53%), Gaps = 12/335 (3%)
 Frame = -1

Query: 1350 FQ*EILSRMQAESMYECEMYAITGQ-KKWCHYLLGRHFRIFTDQCILSY------HRLYK 1192
            F  ++  RMQ  S Y  EM+A+T   KKW  YL+GR F I+TDQ  L Y      H   +
Sbjct: 941  FSKKMTLRMQHASAYVREMFAVTESVKKWRQYLIGRQFYIYTDQQSLKYLMTQGLHTPEQ 1000

Query: 1191 HRQNTNG*RSY*CMTMKLFIPQDVPTSLRILYPVSL---QAQTRYFPPLLQAPPELLGQL 1021
             +  T        +     I     TS R++  +S    +  T  F  +  + P +L Q+
Sbjct: 1001 QKWATK------LIGFDYEIKYRTGTSNRVVDALSRCHSEESTTCFS-MSSSFPTILEQI 1053

Query: 1020 CHFNETHSVGQQLLCKFQQQSCPN--FAVHSGLLHFRGHLFIPLETRPRALLIT*FHASP 847
              +  + S GQQ + K   ++  +  F +  GL+ F+  +FIP     R  L+  FH +P
Sbjct: 1054 RAYYSS-SCGQQFIHKLVSEAAQSSKFHISQGLVFFQNRIFIPDTADLRVTLLKEFHEAP 1112

Query: 846  LDGHYGIRGTVARLANAFSWPHIDTDVRLAIQSCFLCEFHKPSNWKSFGPLQAFPIPQQV 667
              GH G + T+ARL  +  WP +  DV+  +Q C +C+ +KP   KS G LQ  PIP++V
Sbjct: 1113 SAGHSGWKSTLARLTASCQWPGLAKDVKSFVQQCVVCQSNKPLTQKSQGLLQPLPIPEKV 1172

Query: 666  WEDLSRDFITHMPAANDKTVVWVIVDHLTKFAYFIVLXXXXXXXXXXXXXIAEIYCQHHM 487
            W+++S DFITH+P++   TV+WV+VD LTK+A+F  L             + +I   H +
Sbjct: 1173 WDEISMDFITHLPSSQGHTVIWVVVDRLTKYAHFTALPTRFSAETLARRFLNDICKLHGV 1232

Query: 486  PKTIVSDHDKIFVSKFWREMVLLSGTTLAYNSACH 382
            PK+IVSD D +F+S FW+ +  L GT+L Y++A H
Sbjct: 1233 PKSIVSDRDPLFLSAFWKGLFKLLGTSLCYSTAYH 1267



 Score = 97.8 bits (242), Expect(2) = 1e-67
 Identities = 53/116 (45%), Positives = 74/116 (63%)
 Frame = -3

Query: 376  SD*QTKVINYILKTYLRCFVSDSPCH*VLFLALVGLWYNSSY*LALHMSPFQALYGRRPP 197
            SD QT+V+N  L+TYLRCF    P      L+L   WYN+++   L ++PF+ALYGR PP
Sbjct: 1270 SDGQTEVVNRGLQTYLRCFTGTQPNRWFSHLSLAEYWYNTNHHSTLQVTPFEALYGRPPP 1329

Query: 196  SIRDYVFGSTSMGFLDDSLVSRKQMLCLILDNLALAQVCMKSQYGSHRRDGSFNVG 29
            ++RDY+ GST+   + D L SR +ML  +  +L  AQ  MK+Q  S R+D +F VG
Sbjct: 1330 TLRDYLPGSTNDTPIRDILQSRTEMLVTLKQHLLHAQQRMKAQADSGRKDVTFEVG 1385



 Score = 60.5 bits (145), Expect = 8e-06
 Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 8/146 (5%)
 Frame = -3

Query: 1444 LLEFSATFDVTTDASGAAIDVVLLQDSHPLHISIRNFVPNASRVHV*MRNVCHHRSKKVV 1265
            L  FS  F V TDAS  AI  VL QD HP+    +            +R +         
Sbjct: 909  LPNFSKAFVVETDASVVAIGAVLSQDRHPVAFFSKKMTLRMQHASAYVREM----FAVTE 964

Query: 1264 PLPPWSSF-----SYLH---*SMYPFLSQTIQTPAKHKWLTKLLMYDYEIIHTSGRTNIV 1109
             +  W  +      Y++    S+   ++Q + TP + KW TKL+ +DYEI + +G +N V
Sbjct: 965  SVKKWRQYLIGRQFYIYTDQQSLKYLMTQGLHTPEQQKWATKLIGFDYEIKYRTGTSNRV 1024

Query: 1108 ADSLSCISPSSDTVLSSITASTPRVV 1031
             D+LS       T   S+++S P ++
Sbjct: 1025 VDALSRCHSEESTTCFSMSSSFPTIL 1050


>gb|PNY18032.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 1516

 Score =  183 bits (464), Expect(2) = 1e-66
 Identities = 119/335 (35%), Positives = 175/335 (52%), Gaps = 12/335 (3%)
 Frame = -1

Query: 1350 FQ*EILSRMQAESMYECEMYAIT-GQKKWCHYLLGRHFRIFTDQCILSYHRLYKHRQNTN 1174
            F  ++ +RM+A S+Y  EM+AIT   KKW  YL+GRHF IFTDQ   S   L      T 
Sbjct: 719  FSKKMCNRMKASSVYVREMFAITEAVKKWRQYLIGRHFHIFTDQ--KSLKSLLGQTIQTA 776

Query: 1173 G*RSY*CMTMKL----FIPQDVPTSLRILYPVSLQAQTRYFPPLL-----QAPPELLGQL 1021
              + +   T KL    F     P    ++     +  T   P  L        P L+ +L
Sbjct: 777  EQQKW---TSKLQGFSFDIFYKPGKTNLVADALSRKHTDLEPDNLLLTVSSTVPTLISRL 833

Query: 1020 CHFNETHSVGQQLLCKFQQ--QSCPNFAVHSGLLHFRGHLFIPLETRPRALLIT*FHASP 847
              + +  + G+ L+ K     +   +++   GL++F+  L+IP     R  ++  FH +P
Sbjct: 834  QQYYKKDTNGKDLVTKILSATEQIQDYSFKEGLVYFKDRLYIPENPDFRNAIVKEFHNTP 893

Query: 846  LDGHYGIRGTVARLANAFSWPHIDTDVRLAIQSCFLCEFHKPSNWKSFGPLQAFPIPQQV 667
              GH G++ T+ RL+++F WP I  DV+  I+ C +C+ +K    K  G LQ   IP +V
Sbjct: 894  TAGHSGLQPTLTRLSSSFLWPGIYRDVKNFIKQCVVCQQNKYMPTKKQGLLQPLDIPAKV 953

Query: 666  WEDLSRDFITHMPAANDKTVVWVIVDHLTKFAYFIVLXXXXXXXXXXXXXIAEIYCQHHM 487
            WE+++ DFITH+P +   TVVWVI D LTK+ +FI L               EI   H +
Sbjct: 954  WEEITMDFITHLPNSFGHTVVWVICDRLTKYVHFIGLPARFTAKDIAVRFSTEICRLHGI 1013

Query: 486  PKTIVSDHDKIFVSKFWREMVLLSGTTLAYNSACH 382
            P +IVSD D IF+S FW+E+  + GTTL Y+SA H
Sbjct: 1014 PLSIVSDRDPIFLSNFWKELFRVQGTTLKYSSAYH 1048



 Score =  101 bits (251), Expect(2) = 1e-66
 Identities = 52/116 (44%), Positives = 74/116 (63%)
 Frame = -3

Query: 376  SD*QTKVINYILKTYLRCFVSDSPCH*VLFLALVGLWYNSSY*LALHMSPFQALYGRRPP 197
            +D QT+V+N  L+TYLRCF S+ P     FL L   WYNSS+  A+ MSPF+ALYGR PP
Sbjct: 1051 TDGQTEVVNRSLETYLRCFASEHPRKWYKFLHLAEYWYNSSFHSAIKMSPFEALYGRNPP 1110

Query: 196  SIRDYVFGSTSMGFLDDSLVSRKQMLCLILDNLALAQVCMKSQYGSHRRDGSFNVG 29
            SI DYV G ++   +D +L  R+Q++  + +NL  ++  M+ Q    RR+ +F  G
Sbjct: 1111 SILDYVTGRSTNSDIDQTLAERQQIINTLKENLKRSRQKMEDQANKKRRNCTFEPG 1166



 Score = 64.7 bits (156), Expect = 4e-07
 Identities = 49/150 (32%), Positives = 73/150 (48%), Gaps = 12/150 (8%)
 Frame = -3

Query: 1444 LLEFSATFDVTTDASGAAIDVVLLQDSHPLHISIRNFVPN--ASRVHV*MRNVCHHRSKK 1271
            L +FS TF V TDAS  AI  VL QD HP+    +       AS V+V          KK
Sbjct: 687  LPDFSKTFVVETDASSIAIGAVLAQDGHPIAFFSKKMCNRMKASSVYVREMFAITEAVKK 746

Query: 1270 VVPLPPWSSF---SYLH*-----SMYPFLSQTIQTPAKHKWLTKLLMYDYEIIHTSGRTN 1115
                  W  +    + H      S+   L QTIQT  + KW +KL  + ++I +  G+TN
Sbjct: 747  ------WRQYLIGRHFHIFTDQKSLKSLLGQTIQTAEQQKWTSKLQGFSFDIFYKPGKTN 800

Query: 1114 IVADSLS--CISPSSDTVLSSITASTPRVV 1031
            +VAD+LS        D +L +++++ P ++
Sbjct: 801  LVADALSRKHTDLEPDNLLLTVSSTVPTLI 830


>gb|PNX96205.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
          Length = 1314

 Score =  179 bits (453), Expect(2) = 4e-65
 Identities = 117/337 (34%), Positives = 169/337 (50%), Gaps = 14/337 (4%)
 Frame = -1

Query: 1350 FQ*EILSRMQAESMYECEMYAIT-GQKKWCHYLLGRHFRIFTDQCILSYHRLYKHRQNTN 1174
            F  ++  RMQA S Y  EMYAIT   KKW  YL+GRHF IFTDQ   S   L      T 
Sbjct: 575  FSRKMCPRMQAASTYVREMYAITEAVKKWRQYLIGRHFHIFTDQ--KSLRNLLVQTIQTP 632

Query: 1173 G*RSY*CMTMKLFIPQDVPTSLRILYPVSLQAQTR-----------YFPPLLQAPPELLG 1027
              + +    ++ F       S  I Y      Q              F  +    P LL 
Sbjct: 633  EQQKW-ASKLQGF-------SFEIYYKPGKTNQVADALSRRHTDEAIFMSISSPLPTLLA 684

Query: 1026 QLCHFNETHSVGQQLLCKFQQQSCPN--FAVHSGLLHFRGHLFIPLETRPRALLIT*FHA 853
             L  +      G+ L+ K +  +     F    GLL+F+  +++P  +  R  +I  +H 
Sbjct: 685  NLRQYYRDQE-GKTLVLKSETDANMKQVFRFTDGLLYFKEKIYLPDVSDLRQAIIKEYHC 743

Query: 852  SPLDGHYGIRGTVARLANAFSWPHIDTDVRLAIQSCFLCEFHKPSNWKSFGPLQAFPIPQ 673
            +P+ GH  ++ T++R++ +F WP + TDV+  +++C  C+ +K    K  G LQ   IP 
Sbjct: 744  TPMAGHSSVQPTLSRISASFLWPGLYTDVKQFVKTCTTCQQNKYLPTKKQGLLQPLDIPS 803

Query: 672  QVWEDLSRDFITHMPAANDKTVVWVIVDHLTKFAYFIVLXXXXXXXXXXXXXIAEIYCQH 493
            QVW+DLS DFITH+P +   TV+WVI D LTKF +FI L               EI   H
Sbjct: 804  QVWQDLSMDFITHLPQSFGHTVIWVIYDRLTKFVHFITLPTKFSAPDLASRFSVEICRLH 863

Query: 492  HMPKTIVSDHDKIFVSKFWREMVLLSGTTLAYNSACH 382
             +P++IVSD D +F+S FW+E+  + GTTL Y++  H
Sbjct: 864  GIPQSIVSDRDPLFLSAFWKELFRVQGTTLKYSTTYH 900



 Score =  100 bits (248), Expect(2) = 4e-65
 Identities = 50/116 (43%), Positives = 76/116 (65%)
 Frame = -3

Query: 376  SD*QTKVINYILKTYLRCFVSDSPCH*VLFLALVGLWYNSSY*LALHMSPFQALYGRRPP 197
            +D QT+V+N  L+ YLRCF +D+P     +L L   W+NS++  A+ M+PF+ALYGR+PP
Sbjct: 903  TDGQTEVVNRSLEAYLRCFTNDNPRKWFKYLHLAEFWHNSTFHSAIQMTPFEALYGRQPP 962

Query: 196  SIRDYVFGSTSMGFLDDSLVSRKQMLCLILDNLALAQVCMKSQYGSHRRDGSFNVG 29
            +I DYV GS ++  LDDSL  R+++L  +  NL  ++  M+ Q    R+D +F  G
Sbjct: 963  AIIDYVAGSAAITDLDDSLQKRQELLNTLKSNLKRSRQKMEDQANKSRKDCTFESG 1018



 Score = 65.1 bits (157), Expect = 3e-07
 Identities = 46/143 (32%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
 Frame = -3

Query: 1444 LLEFSATFDVTTDASGAAIDVVLLQDSHPLHISIRNFVPNASRVHV*MRNVCHHRSKKVV 1265
            L +FS  F V TDAS  A+  VL Q+ HPL    R   P        +R + +  ++ V 
Sbjct: 543  LPDFSKVFIVETDASAVAVGAVLSQEGHPLAFFSRKMCPRMQAASTYVREM-YAITEAVK 601

Query: 1264 PLPPWSSFSYLH*-----SMYPFLSQTIQTPAKHKWLTKLLMYDYEIIHTSGRTNIVADS 1100
                +    + H      S+   L QTIQTP + KW +KL  + +EI +  G+TN VAD+
Sbjct: 602  KWRQYLIGRHFHIFTDQKSLRNLLVQTIQTPEQQKWASKLQGFSFEIYYKPGKTNQVADA 661

Query: 1099 LSCISPSSDTVLSSITASTPRVV 1031
            LS    + + +  SI++  P ++
Sbjct: 662  LS-RRHTDEAIFMSISSPLPTLL 683


>gb|KYP37502.1| Retrotransposable element Tf2 [Cajanus cajan]
          Length = 603

 Score =  162 bits (411), Expect(3) = 4e-62
 Identities = 82/224 (36%), Positives = 128/224 (57%), Gaps = 4/224 (1%)
 Frame = -1

Query: 1041 PELLGQLCHFNETHSVGQQLLCKFQQQSCP----NFAVHSGLLHFRGHLFIPLETRPRAL 874
            P ++ +L +F ++   G  + C  Q    P    N+    GL+  R  +F+P     R  
Sbjct: 58   PSIIEELMNFYQSDPTG--IACWQQHSVSPGSDSNYHATRGLIFHRNRIFVPDVLHLRRR 115

Query: 873  LIT*FHASPLDGHYGIRGTVARLANAFSWPHIDTDVRLAIQSCFLCEFHKPSNWKSFGPL 694
            L+  FHA+P  GH G + T ARLA +FSWP +  DV+  I+ C  C+ +K  + K  G L
Sbjct: 116  LLHEFHATPSAGHSGSKATRARLAGSFSWPSMSHDVKTFIRECQSCQHNKSIHKKKDGFL 175

Query: 693  QAFPIPQQVWEDLSRDFITHMPAANDKTVVWVIVDHLTKFAYFIVLXXXXXXXXXXXXXI 514
            Q  P P++VWED++ DF+TH+P++   TV+WV+VD L+K+ +F+ L              
Sbjct: 176  QPLPQPRRVWEDINMDFVTHLPSSFGHTVIWVVVDRLSKYVHFLALPTKFSAAALANRFS 235

Query: 513  AEIYCQHHMPKTIVSDHDKIFVSKFWREMVLLSGTTLAYNSACH 382
             ++Y  H  P++IVSD D +F+S+FWRE+  + GTTL + +A H
Sbjct: 236  TDVYRFHGTPRSIVSDRDSMFLSQFWRELFRIQGTTLKFLTAYH 279



 Score = 82.0 bits (201), Expect(3) = 4e-62
 Identities = 45/116 (38%), Positives = 64/116 (55%)
 Frame = -3

Query: 376 SD*QTKVINYILKTYLRCFVSDSPCH*VLFLALVGLWYNSSY*LALHMSPFQALYGRRPP 197
           +D QT+V+N  L  YLRC   D P      L L   WYN+SY  A+  +PFQALYGR PP
Sbjct: 282 TDGQTEVVNRSLSAYLRCVAGDLPRRWYSVLHLAEFWYNTSYHSAIGTTPFQALYGRPPP 341

Query: 196 SIRDYVFGSTSMGFLDDSLVSRKQMLCLILDNLALAQVCMKSQYGSHRRDGSFNVG 29
            +RDY+  S++   ++  L  R   L +I +++   Q  M+ Q    R + +F VG
Sbjct: 342 VVRDYILESSTDTAVESLLQDRTTNLRIIKEHMCRTQQRMRDQANKGRINVTFEVG 397



 Score = 45.4 bits (106), Expect(3) = 4e-62
 Identities = 20/65 (30%), Positives = 37/65 (56%)
 Frame = -3

Query: 1210 LSQTIQTPAKHKWLTKLLMYDYEIIHTSGRTNIVADSLSCISPSSDTVLSSITASTPRVV 1031
            L+Q  QTP + +W  KL  + +EI +  GR+N V D+LS +  +S+ +   I+   P ++
Sbjct: 2    LTQVYQTPEQQRWAFKLQGFSFEIHYKPGRSNRVVDALSRVPSASEALFLHISTPIPSII 61

Query: 1030 RSTLS 1016
               ++
Sbjct: 62   EELMN 66


>gb|OMO79377.1| reverse transcriptase [Corchorus capsularis]
          Length = 1380

 Score =  172 bits (435), Expect(2) = 2e-60
 Identities = 93/222 (41%), Positives = 131/222 (59%), Gaps = 5/222 (2%)
 Frame = -1

Query: 1032 LGQLCHFNETHSVGQQLLCKFQQQSCPNFAVHSGLLHFRGHLFIPLETRPRALLIT*FHA 853
            L +L  F  T+  GQQ+L K   QS   F++H GL+ FRG + IP     +  L+  +HA
Sbjct: 868  LDELREFYATNVQGQQILTKANSQSDKGFSMHDGLVFFRGRVVIPEGHALQLTLLQEYHA 927

Query: 852  SPLDGHYGIRGTVARLANAFSWPHIDTDVRLAIQSCFLCEFHKPSNWKSFGPLQAFPIPQ 673
            S + GH G++ T+ARLA  F WP +   +   IQ+C +C+  K    K  G     PIP 
Sbjct: 928  SLIGGHAGVKKTLARLAANFYWPKMRQSIEQFIQACSICQQVKYEATKPGGLSTPLPIPS 987

Query: 672  QVWEDLSRDFITHMPAANDKTVVWVIVDHLTKFAYFIVLXXXXXXXXXXXXXIAEIYCQ- 496
            Q+W+D+S DFITH+P++ DKT +WVIVD L+K+A+FI L             +AEI+C+ 
Sbjct: 988  QIWQDISMDFITHLPSSYDKTDIWVIVDRLSKYAHFIAL-----PPSYTASSLAEIFCKD 1042

Query: 495  ----HHMPKTIVSDHDKIFVSKFWREMVLLSGTTLAYNSACH 382
                H MP +IVSD D  F+S FW+E+  L GT L ++SA H
Sbjct: 1043 FCKLHGMPTSIVSDRDPKFLSAFWKELFKLQGTQLFHSSAYH 1084



 Score = 91.7 bits (226), Expect(2) = 2e-60
 Identities = 52/116 (44%), Positives = 71/116 (61%)
 Frame = -3

Query: 376  SD*QTKVINYILKTYLRCFVSDSPCH*VLFLALVGLWYNSSY*LALHMSPFQALYGRRPP 197
            SD Q++V+N  L+TYLR F SD P     FL      YN+S   A   +PF+A+YGR PP
Sbjct: 1087 SDGQSEVLNRCLETYLRSFASDKPKQWTKFLHWAEYSYNTSKHSATGYTPFEAVYGRPPP 1146

Query: 196  SIRDYVFGSTSMGFLDDSLVSRKQMLCLILDNLALAQVCMKSQYGSHRRDGSFNVG 29
            ++  Y+ G+T +  LD SL+ R+Q+L  +  NLA AQ  MK QY  +R +  FNVG
Sbjct: 1147 TVLSYLPGTTKVVQLDASLLERQQLLSSLKTNLARAQNRMKMQYDQNRPEKQFNVG 1202


>gb|PNX94328.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
          Length = 1474

 Score =  166 bits (421), Expect(2) = 2e-58
 Identities = 117/336 (34%), Positives = 166/336 (49%), Gaps = 11/336 (3%)
 Frame = -1

Query: 1356 CIFQ*EILSRMQAESMYECEMYAIT-GQKKWCHYLLGRHFRIFTDQCILSYHRLYKHRQN 1180
            C F  +   RM   S Y  E+ AIT   KKW  YLLG  F I+TDQ   S   L      
Sbjct: 863  CYFSKQFCPRMLQASTYVRELCAITTAVKKWRTYLLGNTFAIYTDQ--RSLRELMTQVIQ 920

Query: 1179 TNG*RSY*CMTMKLFIPQDVPTSLRILYPVSLQ-----AQTRYFPPLLQAPPELLGQLCH 1015
            T           + ++ + +  S  I+Y    Q     A +R    +L  P   +  L  
Sbjct: 921  TP--------EQQFYLAKLLGYSYEIIYKPGPQNRVADALSRVHCLVLTIPQ--MDFLTT 970

Query: 1014 FNETHSVG---QQLLCKFQQQSCP--NFAVHSGLLHFRGHLFIPLETRPRALLIT*FHAS 850
            F +  +V    QQ L + Q +      F + +GLL F+G LFIP  +  +  L+  FHAS
Sbjct: 971  FKQQLAVDTEFQQFLAQVQAKPAEYSEFEIMNGLLFFKGKLFIPATSPLKLTLLEEFHAS 1030

Query: 849  PLDGHYGIRGTVARLANAFSWPHIDTDVRLAIQSCFLCEFHKPSNWKSFGPLQAFPIPQQ 670
             + GH GI  T  RL     W  +  DV   ++SC +C+  KP+N   +G LQ  PIP++
Sbjct: 1031 TIGGHSGIHRTYGRLQENVFWYGMRNDVTHFVKSCSICQQTKPANHSPYGLLQPLPIPEK 1090

Query: 669  VWEDLSRDFITHMPAANDKTVVWVIVDHLTKFAYFIVLXXXXXXXXXXXXXIAEIYCQHH 490
            VWED+S DFI  +P+    TV++V+VD L+K A+F  L                +   H 
Sbjct: 1091 VWEDISLDFIVGLPSVQSHTVIFVVVDRLSKAAHFGSLPTHFTAIKVADLFAKMVCKLHG 1150

Query: 489  MPKTIVSDHDKIFVSKFWREMVLLSGTTLAYNSACH 382
            MP++IVSD D IF+S+FW+E+  LSGT L  ++A H
Sbjct: 1151 MPRSIVSDRDPIFLSQFWQELFKLSGTKLRMSTAYH 1186



 Score = 90.5 bits (223), Expect(2) = 2e-58
 Identities = 48/116 (41%), Positives = 68/116 (58%)
 Frame = -3

Query: 376  SD*QTKVINYILKTYLRCFVSDSPCH*VLFLALVGLWYNSSY*LALHMSPFQALYGRRPP 197
            SD QT+++N +L+ YLRCFV D P     FL      YN++   +  +SPFQ +YGR PP
Sbjct: 1189 SDGQTEIVNKVLQQYLRCFVHDKPNQWEQFLHWAEWHYNTAIHTSTGLSPFQIVYGRPPP 1248

Query: 196  SIRDYVFGSTSMGFLDDSLVSRKQMLCLILDNLALAQVCMKSQYGSHRRDGSFNVG 29
            ++ DY+ GS+S+  +D +L+ R  ML  + + L  AQ  MK Q   HR    F VG
Sbjct: 1249 ALADYIPGSSSIQAIDATLIDRDMMLQNLKNKLQKAQAIMKEQADQHRIPHKFKVG 1304



 Score = 61.2 bits (147), Expect = 4e-06
 Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 4/121 (3%)
 Frame = -3

Query: 1444 LLEFSATFDVTTDASGAAIDVVLLQDSHPLHISIRNFVPNASRVHV*MRNVCHHRS--KK 1271
            L  F   F + TDASG  +  VL+Q  HP+    + F P   +    +R +C   +  KK
Sbjct: 833  LPNFDEKFILETDASGVGMGAVLMQSGHPICYFSKQFCPRMLQASTYVRELCAITTAVKK 892

Query: 1270 VVPLPPWSSFSYL--H*SMYPFLSQTIQTPAKHKWLTKLLMYDYEIIHTSGRTNIVADSL 1097
                   ++F+      S+   ++Q IQTP +  +L KLL Y YEII+  G  N VAD+L
Sbjct: 893  WRTYLLGNTFAIYTDQRSLRELMTQVIQTPEQQFYLAKLLGYSYEIIYKPGPQNRVADAL 952

Query: 1096 S 1094
            S
Sbjct: 953  S 953


>gb|KYP68328.1| Retrotransposable element Tf2 [Cajanus cajan]
          Length = 596

 Score =  212 bits (539), Expect = 3e-58
 Identities = 126/340 (37%), Positives = 182/340 (53%), Gaps = 17/340 (5%)
 Frame = -1

Query: 1350 FQ*EILSRMQAESMYECEMYAITGQ-KKWCHYLLGRHFRIFTDQCILSYHRLYKHRQNTN 1174
            F  ++ S++Q  S Y  EMYAIT   KKW  YL+G HFRIFTDQ   S   ++     T 
Sbjct: 222  FSKKLCSKLQVASAYAREMYAITESIKKWRQYLIGHHFRIFTDQ--QSLRHMFSQVFQTP 279

Query: 1173 G*RSY*CMTMKLFIPQDVPTSLRILYPVSLQAQTRYFPPLLQAP--------------PE 1036
              + +               S  ILY      Q R    L + P              P+
Sbjct: 280  DQQKWAAKLQGF--------SYEILYKPG--KQNRVADALSRVPDSHELIFLAISTIIPD 329

Query: 1035 LLGQLCHFNETHSVGQQLLCKFQQQSC--PNFAVHSGLLHFRGHLFIPLETRPRALLIT* 862
            ++ QL +F    + G  L+ +    +   P+F V  GL++F+  LFIP     R+ ++  
Sbjct: 330  IVEQLKNFFSAQADGIALVQQLSSATTTKPHFIVAHGLVYFKNRLFIPEIPSLRSSILHE 389

Query: 861  FHASPLDGHYGIRGTVARLANAFSWPHIDTDVRLAIQSCFLCEFHKPSNWKSFGPLQAFP 682
            FHASP+ GH+G++ T+ARLA +F+WP +  DV+  ++SC  C+ +K    K  G LQ  P
Sbjct: 390  FHASPMAGHFGVKATLARLAASFAWPSMAKDVKAFVRSCSTCQHNKSVTSKKQGLLQPLP 449

Query: 681  IPQQVWEDLSRDFITHMPAANDKTVVWVIVDHLTKFAYFIVLXXXXXXXXXXXXXIAEIY 502
            IP +VW D+S DF+TH+P++   TV+WV+VD L+K+A+FI L             + EI 
Sbjct: 450  IPAKVWSDISMDFLTHLPSSAGHTVIWVVVDRLSKYAHFIALPTHFNASSLASRFMTEIV 509

Query: 501  CQHHMPKTIVSDHDKIFVSKFWREMVLLSGTTLAYNSACH 382
              H  P+TIVSD DK+F+S FWRE+  L GT L ++SA H
Sbjct: 510  RLHGFPRTIVSDRDKVFLSSFWRELFRLHGTKLCFSSAYH 549



 Score = 66.2 bits (160), Expect = 8e-08
 Identities = 43/146 (29%), Positives = 64/146 (43%), Gaps = 8/146 (5%)
 Frame = -3

Query: 1444 LLEFSATFDVTTDASGAAIDVVLLQDSHPLHISIRNFVPNASRVHV*MRNVCHHRSKKVV 1265
            L  F A+FD+ TDAS  A+  VLLQ  HP+    +             R +         
Sbjct: 190  LPNFQASFDIETDASSTAVGAVLLQSGHPIAYFSKKLCSKLQVASAYAREMYAITES--- 246

Query: 1264 PLPPWSSFSYLH--------*SMYPFLSQTIQTPAKHKWLTKLLMYDYEIIHTSGRTNIV 1109
             +  W  +   H         S+    SQ  QTP + KW  KL  + YEI++  G+ N V
Sbjct: 247  -IKKWRQYLIGHHFRIFTDQQSLRHMFSQVFQTPDQQKWAAKLQGFSYEILYKPGKQNRV 305

Query: 1108 ADSLSCISPSSDTVLSSITASTPRVV 1031
            AD+LS +  S + +  +I+   P +V
Sbjct: 306  ADALSRVPDSHELIFLAISTIIPDIV 331


>dbj|GAU51717.1| hypothetical protein TSUD_415230, partial [Trifolium subterraneum]
          Length = 1147

 Score =  160 bits (406), Expect(2) = 3e-56
 Identities = 117/336 (34%), Positives = 163/336 (48%), Gaps = 11/336 (3%)
 Frame = -1

Query: 1356 CIFQ*EILSRMQAESMYECEMYAIT-GQKKWCHYLLGRHFRIFTDQCILSYHRLYKHRQN 1180
            C F  +   RM   S Y  E+ AIT   KKW  YLLG  F IFTDQ   S   L      
Sbjct: 503  CYFSKQFCPRMTQASTYVRELCAITTAVKKWRTYLLGNTFTIFTDQ--RSLRELMTQIIQ 560

Query: 1179 TNG*RSY*CMTMKLFIPQDVPTSLRILYPVSLQ-----AQTRYFPPLLQAPPELLGQLCH 1015
            T           + ++ + +  S  I+Y    Q     A +R    ++  P   L  L  
Sbjct: 561  TP--------EQQFYLAKLLGYSYEIVYKPGPQNRVADALSRVHCLVITVPQ--LDFLTT 610

Query: 1014 FNET---HSVGQQLLC--KFQQQSCPNFAVHSGLLHFRGHLFIPLETRPRALLIT*FHAS 850
            F +     S  QQ L   K      P+F + +GLL F+G LFIP  +  +  L+  FH+S
Sbjct: 611  FKQQLAEDSEFQQFLALVKATPTDYPDFELLNGLLFFKGKLFIPATSPLKHTLLEEFHSS 670

Query: 849  PLDGHYGIRGTVARLANAFSWPHIDTDVRLAIQSCFLCEFHKPSNWKSFGPLQAFPIPQQ 670
             + GH GI  T  RL     W  +  DV   ++SC +C+ +KP+N   +G LQ  PIP +
Sbjct: 671  TIGGHSGIHRTYGRLQENVFWEGMRKDVIQFVKSCSVCQQNKPTNHSPYGLLQPLPIPHR 730

Query: 669  VWEDLSRDFITHMPAANDKTVVWVIVDHLTKFAYFIVLXXXXXXXXXXXXXIAEIYCQHH 490
            VWED+S DFI  +P+    T + V+VD L+K A+F +L                I   H 
Sbjct: 731  VWEDVSLDFIVGLPSFQSHTAILVVVDRLSKAAHFGLLPTHFTAVKVADLFAKMICRLHG 790

Query: 489  MPKTIVSDHDKIFVSKFWREMVLLSGTTLAYNSACH 382
            MP+++VSD D IF+S FW+E+  LSGT L  ++A H
Sbjct: 791  MPRSMVSDRDPIFLSHFWQELFHLSGTKLRMSTAYH 826



 Score = 88.6 bits (218), Expect(2) = 3e-56
 Identities = 48/116 (41%), Positives = 69/116 (59%)
 Frame = -3

Query: 376  SD*QTKVINYILKTYLRCFVSDSPCH*VLFLALVGLWYNSSY*LALHMSPFQALYGRRPP 197
            SD QT+++N +L+ YLRCFVSD P     FL      YN++   +  +SPFQ +YGR PP
Sbjct: 829  SDGQTEIVNKVLQQYLRCFVSDKPSQWGKFLHWAEWHYNTATHTSTGLSPFQVVYGRAPP 888

Query: 196  SIRDYVFGSTSMGFLDDSLVSRKQMLCLILDNLALAQVCMKSQYGSHRRDGSFNVG 29
            ++ DY+ GS+++  +D +L  R  +L L+ + L  AQ  MK Q   HR   SF  G
Sbjct: 889  TLVDYIPGSSTIQAIDATLSDRNIILQLLKNKLLKAQQIMKEQADQHRISHSFKEG 944



 Score = 62.4 bits (150), Expect = 2e-06
 Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
 Frame = -3

Query: 1444 LLEFSATFDVTTDASGAAIDVVLLQDSHPLHISIRNFVPNASRVHV*MRNVCHHRS--KK 1271
            L  F+  F + TDASG  +  VL+Q+ HP+    + F P  ++    +R +C   +  KK
Sbjct: 473  LPNFNEKFVLETDASGLGMGAVLIQNGHPICYFSKQFCPRMTQASTYVRELCAITTAVKK 532

Query: 1270 VVPLPPWSSFSYL--H*SMYPFLSQTIQTPAKHKWLTKLLMYDYEIIHTSGRTNIVADSL 1097
                   ++F+      S+   ++Q IQTP +  +L KLL Y YEI++  G  N VAD+L
Sbjct: 533  WRTYLLGNTFTIFTDQRSLRELMTQIIQTPEQQFYLAKLLGYSYEIVYKPGPQNRVADAL 592

Query: 1096 S 1094
            S
Sbjct: 593  S 593


>gb|OMO96556.1| reverse transcriptase [Corchorus capsularis]
          Length = 963

 Score =  159 bits (403), Expect(2) = 4e-55
 Identities = 111/342 (32%), Positives = 160/342 (46%), Gaps = 19/342 (5%)
 Frame = -1

Query: 1350 FQ*EILSRMQAESMYECEMYAIT-GQKKWCHYLLGRHFRIFTDQCILSYHRLYKHRQNTN 1174
            F  ++  +MQ  S Y  EMYAIT    KW  YLLGR F IFTDQ  L             
Sbjct: 403  FSKKLSPQMQFASAYVREMYAITEAVHKWRQYLLGRSFTIFTDQQSLRN----------- 451

Query: 1173 G*RSY*CMTMKLFIPQDVPTSLRIL------------YPVSLQAQTRYFPPLLQ----AP 1042
                   MT  +  P+      ++L            + ++  A +R   P  Q    + 
Sbjct: 452  ------LMTQTIQTPEQQKWLAKLLGFNYSIVYKPGRHNLAANALSRCPEPAAQYLATSS 505

Query: 1041 P--ELLGQLCHFNETHSVGQQLLCKFQQQSCPNFAVHSGLLHFRGHLFIPLETRPRALLI 868
            P    L  L H+  T   GQQLL + QQ S   +++  GLL ++G + IP     ++ L+
Sbjct: 506  PVFSFLDSLRHYYATSETGQQLLNQGQQDSNMGYSISDGLLFYQGKIVIPEGHELQSQLL 565

Query: 867  T*FHASPLDGHYGIRGTVARLANAFSWPHIDTDVRLAIQSCFLCEFHKPSNWKSFGPLQA 688
              +H +P  GH GI  T +RLA  F WP +   V   +QSC +C+               
Sbjct: 566  HEYHGTPTGGHAGISKTYSRLAAIFFWPQMRKSVHTFVQSCQICQ--------------- 610

Query: 687  FPIPQQVWEDLSRDFITHMPAANDKTVVWVIVDHLTKFAYFIVLXXXXXXXXXXXXXIAE 508
                    +D+S DFIT +P +N KT +WVIVD L+K+A+FI L               E
Sbjct: 611  --------QDISMDFITSLPPSNGKTTIWVIVDRLSKYAHFIALPSSVTAASLAELFSKE 662

Query: 507  IYCQHHMPKTIVSDHDKIFVSKFWREMVLLSGTTLAYNSACH 382
            I   H +P++IVSD D +F+S+FW+E+  L  T+L  ++A H
Sbjct: 663  ICKLHGVPRSIVSDRDSLFLSQFWKELFKLQDTSLKMSTAYH 704



 Score = 85.9 bits (211), Expect(2) = 4e-55
 Identities = 50/116 (43%), Positives = 67/116 (57%)
 Frame = -3

Query: 376  SD*QTKVINYILKTYLRCFVSDSPCH*VLFLALVGLWYNSSY*LALHMSPFQALYGRRPP 197
            +D QT+V+N  L+TYLRCF SD P     FL      YN++   A   SPF+ +YGR PP
Sbjct: 707  TDGQTEVLNRCLETYLRCFASDKPRLWSKFLHWAEWSYNTATHSATGFSPFEVVYGRPPP 766

Query: 196  SIRDYVFGSTSMGFLDDSLVSRKQMLCLILDNLALAQVCMKSQYGSHRRDGSFNVG 29
            +I  YV G T +  L+DSL+ R+ +L  +  NLA AQ  MK Q      + SF+ G
Sbjct: 767  TIASYVIGQTKIAALEDSLLERQNILNELKTNLAHAQNRMKMQADRKHSEKSFSEG 822



 Score = 62.8 bits (151), Expect = 1e-06
 Identities = 40/135 (29%), Positives = 71/135 (52%), Gaps = 6/135 (4%)
 Frame = -3

Query: 1444 LLEFSATFDVTTDASGAAIDVVLLQDSHPLHISIRNFVPNASRVHV*MRNV-----CHHR 1280
            L +F++ F +  DAS  A+  VL Q  HP+    +   P        +R +       H+
Sbjct: 371  LPDFASPFCIEADASNIAVGAVLSQGGHPIAYFSKKLSPQMQFASAYVREMYAITEAVHK 430

Query: 1279 SKKVVPLPPWSSFSYLH*SMYPFLSQTIQTPAKHKWLTKLLMYDYEIIHTSGRTNIVADS 1100
             ++ +    ++ F+    S+   ++QTIQTP + KWL KLL ++Y I++  GR N+ A++
Sbjct: 431  WRQYLLGRSFTIFTDQQ-SLRNLMTQTIQTPEQQKWLAKLLGFNYSIVYKPGRHNLAANA 489

Query: 1099 LS-CISPSSDTVLSS 1058
            LS C  P++  + +S
Sbjct: 490  LSRCPEPAAQYLATS 504


>gb|AAO23078.1| polyprotein [Glycine max]
          Length = 1552

 Score =  166 bits (419), Expect(2) = 6e-55
 Identities = 112/341 (32%), Positives = 168/341 (49%), Gaps = 18/341 (5%)
 Frame = -1

Query: 1350 FQ*EILSRMQAESMYECEMYAIT-GQKKWCHYLLGRHFRIFTDQCILSYHRLYKHRQNTN 1174
            F  ++  RMQ +S Y  E+ AIT    K+ HYLLG  F I TDQ  L             
Sbjct: 917  FSKKLAPRMQKQSAYTRELLAITEALSKFRHYLLGNKFIIRTDQRSLKS----------- 965

Query: 1173 G*RSY*CMTMKLFIPQDVPTSLRILYPVSLQAQTRYFPPLLQAPPELLGQL--CHFNETH 1000
                   M   L  P+      + L       +  Y P       + L ++    ++E H
Sbjct: 966  ------LMDQSLQTPEQQAWLHKFL---GYDFKIEYKPGKDNQAADALSRMFMLAWSEPH 1016

Query: 999  SVG--------------QQLLCKFQQQS-CPNFAVHSGLLHFRGHLFIPLETRPRALLIT 865
            S+               +QL+  ++Q +   ++ V  GLL+++  + IP E      ++ 
Sbjct: 1017 SIFLEELRARLISDPHLKQLMETYKQGADASHYTVREGLLYWKDRVVIPAEEEIVNKILQ 1076

Query: 864  *FHASPLDGHYGIRGTVARLANAFSWPHIDTDVRLAIQSCFLCEFHKPSNWKSFGPLQAF 685
             +H+SP+ GH GI  T+ARL   F WP +  DV+  IQ C +C+  K +N    G LQ  
Sbjct: 1077 EYHSSPIGGHAGITRTLARLKAQFYWPKMQEDVKAYIQKCLICQQAKSNNTLPAGLLQPL 1136

Query: 684  PIPQQVWEDLSRDFITHMPAANDKTVVWVIVDHLTKFAYFIVLXXXXXXXXXXXXXIAEI 505
            PIPQQVWED++ DFIT +P +   +V+ V++D LTK+A+FI L             ++ I
Sbjct: 1137 PIPQQVWEDVAMDFITGLPNSFGLSVIMVVIDRLTKYAHFIPLKADYNSKVVAEAFMSHI 1196

Query: 504  YCQHHMPKTIVSDHDKIFVSKFWREMVLLSGTTLAYNSACH 382
               H +P++IVSD D++F S FW+ +  L GTTLA +SA H
Sbjct: 1197 VKLHGIPRSIVSDRDRVFTSTFWQHLFKLQGTTLAMSSAYH 1237



 Score = 79.3 bits (194), Expect(2) = 6e-55
 Identities = 44/116 (37%), Positives = 62/116 (53%)
 Frame = -3

Query: 376  SD*QTKVINYILKTYLRCFVSDSPCH*VLFLALVGLWYNSSY*LALHMSPFQALYGRRPP 197
            SD Q++V+N  L+ YLRCF  + P   V  L     WYN++Y ++L M+PF+ALYGR PP
Sbjct: 1240 SDGQSEVLNKCLEMYLRCFTYEHPKGWVKALPWAEFWYNTAYHMSLGMTPFRALYGREPP 1299

Query: 196  SIRDYVFGSTSMGFLDDSLVSRKQMLCLILDNLALAQVCMKSQYGSHRRDGSFNVG 29
            ++            + + L  R  +L  +  NL  AQ  MK Q    R D SF +G
Sbjct: 1300 TLTRQACSIDDPAEVREQLTDRDALLAKLKINLTRAQQVMKRQADKKRLDVSFQIG 1355