BLASTX nr result
ID: Astragalus22_contig00020811
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Astragalus22_contig00020811
(820 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|PNX71533.1| ribonuclease H [Trifolium pratense] 207 6e-58
dbj|GAU38301.1| hypothetical protein TSUD_157860 [Trifolium subt... 193 1e-56
gb|PNY14301.1| ribonuclease H [Trifolium pratense] 203 1e-55
gb|PNY15111.1| ribonuclease H [Trifolium pratense] 201 4e-55
gb|PNX72264.1| ribonuclease H [Trifolium pratense] 193 1e-52
dbj|GAU35627.1| hypothetical protein TSUD_30450 [Trifolium subte... 194 2e-52
gb|AFK38936.1| unknown [Medicago truncatula] 164 2e-45
dbj|GAU35964.1| hypothetical protein TSUD_207680 [Trifolium subt... 144 6e-39
dbj|GAU30026.1| hypothetical protein TSUD_161120 [Trifolium subt... 152 6e-38
dbj|GAU47092.1| hypothetical protein TSUD_369250 [Trifolium subt... 144 2e-37
dbj|GAU41525.1| hypothetical protein TSUD_140560 [Trifolium subt... 145 1e-35
dbj|GAU29911.1| hypothetical protein TSUD_148190 [Trifolium subt... 134 1e-32
dbj|GAU39028.1| hypothetical protein TSUD_59840 [Trifolium subte... 131 1e-30
dbj|GAU39667.1| hypothetical protein TSUD_60340 [Trifolium subte... 129 7e-30
gb|PNX85413.1| ribonuclease H [Trifolium pratense] >gi|133524134... 117 2e-28
gb|PNX58626.1| ribonuclease H, partial [Trifolium pratense] 114 3e-27
gb|PNY04967.1| ribonuclease H [Trifolium pratense] 114 3e-27
dbj|GAU21787.1| hypothetical protein TSUD_329120, partial [Trifo... 119 9e-27
dbj|GAU32098.1| hypothetical protein TSUD_292220 [Trifolium subt... 112 3e-26
dbj|GAU37237.1| hypothetical protein TSUD_375390 [Trifolium subt... 112 6e-26
>gb|PNX71533.1| ribonuclease H [Trifolium pratense]
Length = 798
Score = 207 bits (527), Expect = 6e-58
Identities = 113/280 (40%), Positives = 162/280 (57%), Gaps = 14/280 (5%)
Frame = +2
Query: 2 SNLRKKCIQLDVACPLCNAAPETLEHLFSEHIFLECNVTRLALFASRLAIHPPLQTDILE 181
SNL KK I LD+ CPLC++ E+ S+H+FL+C++ +L LFAS L H P+ D+ +
Sbjct: 500 SNLHKKGITLDLLCPLCSSEEES-----SQHLFLKCDMFKLTLFASHLGSHIPIDIDLHD 554
Query: 182 WLLKWLTCRDTEGAQLFCIMIWR---AKNEAVFNNKKPDPIRIAEAAVEFITEYIAANSS 352
W+LKWL C+D G QLFC ++W+ +N +FN + DP +A A+ F+ E+ AN S
Sbjct: 555 WILKWLVCQDPLGVQLFCTLLWKFWAGRNAVIFNGWQMDPTFLALDALSFVQEFNEANPS 614
Query: 353 RLHFSLQEQQAPIPANHLGT---CLYVDVGSFNDGTTCWGLCVVNADGDIIYSACKRDNI 523
R +L Q P+ T ++VD G N G T WGL + N +G+ ++SACKR++I
Sbjct: 615 RNRRALVSQSISEPSRSTCTSMNSMFVDAGCCNSGHTVWGLVLRNLNGETVFSACKREDI 674
Query: 524 --------AVDIRWGMQQVLEMNFVPDAIYSDAQVVTLCISKRFHVASIEHIMQDCRSLL 679
A+ +RW +Q + +IYSDA V CI+KR + A+I I QDCR+L+
Sbjct: 675 TAEPLLAEALGVRWALQVATDQGINSVSIYSDAANVVNCINKRSNFAAINLIAQDCRNLM 734
Query: 680 ELILGCSVNHIRRDGNLVAHRLVGLAKRFGNENWLGPPPV 799
+ SV I R N AH LV LAK G+ WLG P+
Sbjct: 735 AGLGNVSVMFISRTQNCDAHNLVSLAKVVGSRTWLGVAPL 774
>dbj|GAU38301.1| hypothetical protein TSUD_157860 [Trifolium subterraneum]
Length = 317
Score = 193 bits (491), Expect = 1e-56
Identities = 105/280 (37%), Positives = 152/280 (54%), Gaps = 12/280 (4%)
Frame = +2
Query: 5 NLRKKCIQLDVACPLCNAAPETLEHLFSEHIFLECNVTRLALFASRLAIHPPLQTDILEW 184
NL KK I D++CPLC+ E+ S H+F+ CN+ RL LFAS L H P+ D+ W
Sbjct: 26 NLSKKGINFDLSCPLCHHGLES-----SNHLFMNCNLMRLTLFASNLGSHIPVSVDVSVW 80
Query: 185 LLKWLTCRDTEGAQLFCIMIWR---AKNEAVFNNKKPDPIRIAEAAVEFITEYIAANSSR 355
+L WLTC+D G QLFC+++W+ +N+ +F DPI +A A ++ E+ AN R
Sbjct: 81 ILSWLTCKDMIGTQLFCVLLWKFWYGRNQVIFKGVVLDPIALAAEAALYVHEFNEANPRR 140
Query: 356 LHFSLQEQQAPIPANHLG-TCLYVDVGSFNDGTTCWGLCVVNADGDIIYSACKRDNIAVD 532
+ +Q + + ++ D G FN+G T WG+ + N DG +SACKR+ I V+
Sbjct: 141 CSQVVLQQASVSRLDDANMQLMFTDAGCFNNGYTGWGIVLRNVDGTTSFSACKREEIEVE 200
Query: 533 --------IRWGMQQVLEMNFVPDAIYSDAQVVTLCISKRFHVASIEHIMQDCRSLLELI 688
+RW +Q L+ + I SDA V CI+KR +ASI+ I QDCR LL
Sbjct: 201 PAVAEALGVRWALQLSLDQHLDNFIILSDAANVVNCIAKRISLASIDLIAQDCRDLLCNF 260
Query: 689 LGCSVNHIRRDGNLVAHRLVGLAKRFGNENWLGPPPVNCN 808
S+ + R N+ AH + LAK G+ W+G P N
Sbjct: 261 SNVSIKFVGRALNIDAHNVASLAKCVGSRTWVGSAPTVSN 300
>gb|PNY14301.1| ribonuclease H [Trifolium pratense]
Length = 1196
Score = 203 bits (516), Expect = 1e-55
Identities = 113/279 (40%), Positives = 158/279 (56%), Gaps = 13/279 (4%)
Frame = +2
Query: 5 NLRKKCIQLDVACPLCNAAPETLEHLFSEHIFLECNVTRLALFASRLAIHPPLQTDILEW 184
NL KK I LD++CPLC+ E+ S H+F+ CN+ RL LFAS L H P D+ W
Sbjct: 905 NLAKKGINLDLSCPLCHHVLES-----SNHLFMHCNIMRLTLFASNLGSHIPHSVDLSVW 959
Query: 185 LLKWLTCRDTEGAQLFCIMIWR---AKNEAVFNNKKPDPIRIAEAAVEFITEYIAANSSR 355
+L WLTC+D G QLFC+++W+ +N+ +F + DPI +A A+E++ E+ AN R
Sbjct: 960 ILSWLTCKDMIGTQLFCVLLWKFWYGRNQVIFKDAVFDPILLAADAIEYVHEFNEANPRR 1019
Query: 356 LH-FSLQEQQAPIPANHLGTCLYVDVGSFNDGTTCWGLCVVNADGDIIYSACKRDNIAVD 532
+ LQ AP + ++ D G FN+G T WGL + N DG +SACKR+NI V+
Sbjct: 1020 CNQVVLQHISAPRLDDSNMQLMFTDAGCFNNGYTGWGLVLRNVDGTTSFSACKRENIEVE 1079
Query: 533 --------IRWGMQQVLEMNFVPDAIYSDAQVVTLCISKRFHVASIEHIMQDCRSLLELI 688
+RW ++ L + I SDA V CI+KR +ASIE I QDCR LL
Sbjct: 1080 PALAEALGVRWALEFALAQHLDNIIILSDAANVVNCIAKRTVLASIELIAQDCRDLLCNF 1139
Query: 689 LGCSVNHIRRDGNLVAHRLVGLAKRFGNENWLG-PPPVN 802
S+ + R N+ AH + LAK G+ W+G PPV+
Sbjct: 1140 SNVSIKFVSRVSNVDAHNVASLAKFVGSRTWIGNAPPVS 1178
>gb|PNY15111.1| ribonuclease H [Trifolium pratense]
Length = 1334
Score = 201 bits (512), Expect = 4e-55
Identities = 110/284 (38%), Positives = 163/284 (57%), Gaps = 14/284 (4%)
Frame = +2
Query: 2 SNLRKKCIQLDVACPLCNAAPETLEHLFSEHIFLECNVTRLALFASRLAIHPPLQTDILE 181
+NL +K +Q++ CP C++APET++HLF L C++T+L FAS+L P +
Sbjct: 1045 ANLVRKGVQIENLCPQCHSAPETIDHLF-----LHCHLTQLTWFASQLGARVPQSVPVHI 1099
Query: 182 WLLKWLTCRDTEGAQLFCIM---IWRAKNEAVFNNKKPDPIRIAEAAVEFITEYIAANSS 352
WLL+ LTC DT GAQLFC++ IW A+N VFNNK DPI IA+ A+ F+ E + S
Sbjct: 1100 WLLQGLTCDDTRGAQLFCVLMWKIWNARNNLVFNNKLVDPIAIAQEAMYFMQEL--SPSP 1157
Query: 353 RLHFSLQEQQAPIPANHLGTC---LYVDVGSFNDGTTCWGLCVVNADGDIIYSACKRDNI 523
H + Q A + A + + YVD G F+ T WG+ + N G ++ SAC+++ I
Sbjct: 1158 HEHNATPMQDAVLAAQPMPSAPHVFYVDAGCFSGNATGWGMVIYNQSGRVVLSACRKELI 1217
Query: 524 --------AVDIRWGMQQVLEMNFVPDAIYSDAQVVTLCISKRFHVASIEHIMQDCRSLL 679
A+ +RW +Q+ +E+N I SDA V CI+ HVA I+ ++QDC L+
Sbjct: 1218 DVEPVLAEAIGVRWCLQKAIELNMTDIVIVSDAATVVSCINSNKHVAVIDLVIQDCNLLI 1277
Query: 680 ELILGCSVNHIRRDGNLVAHRLVGLAKRFGNENWLGPPPVNCNA 811
E + V H+RR N+VAH L G + G + W+G P + +A
Sbjct: 1278 EQLDSVVVTHVRRHLNVVAHGLAGFSNVVGTKLWMGVVPNSISA 1321
>gb|PNX72264.1| ribonuclease H [Trifolium pratense]
Length = 854
Score = 193 bits (490), Expect = 1e-52
Identities = 106/282 (37%), Positives = 157/282 (55%), Gaps = 15/282 (5%)
Frame = +2
Query: 2 SNLRKKCIQLDVACPLCNAAPETLEHLFSEHIFLECNVTRLALFASRLAIHPPLQTDILE 181
+NL K I LD+ CPLC E+ S+H+FL+C++ +L LFAS L H P+ D+ +
Sbjct: 557 TNLHNKGITLDLQCPLCFREEES-----SQHLFLKCDIFKLTLFASHLGSHIPMNIDLHD 611
Query: 182 WLLKWLTCRDTEGAQLFCIMIWR---AKNEAVFNNKKPDPIRIAEAAVEFITEYIAANSS 352
W+L+WL C+D G QLFC+++W+ +N AVFN + DP R+A A+ F+ ++ AN
Sbjct: 612 WILEWLLCQDPMGVQLFCVLLWKFWAGRNAAVFNGVQLDPGRLAIDAMSFVHDFNEANPP 671
Query: 353 RLHFSLQEQQAPIPANHLGT----CLYVDVGSFNDGTTCWGLCVVNADGDIIYSACKRDN 520
R + A +P T L+VD G N G T WGL + N+DG+ + SACKR++
Sbjct: 672 RCR---RAPVAHVPIQPGMTNPIFSLFVDAGCSNSGHTVWGLVLRNSDGETVLSACKRED 728
Query: 521 IAVD--------IRWGMQQVLEMNFVPDAIYSDAQVVTLCISKRFHVASIEHIMQDCRSL 676
VD +RW +Q V++ +IYSDA V CI++ A+I I +DCR L
Sbjct: 729 FYVDPLMAEALGVRWALQLVVDQGINSVSIYSDAANVVNCINRNSSFAAINLIAEDCRKL 788
Query: 677 LELILGCSVNHIRRDGNLVAHRLVGLAKRFGNENWLGPPPVN 802
+ + V + R N AH L LA+ GN W+G P++
Sbjct: 789 MNRLTNVCVLFVSRTQNSDAHNLASLARIMGNRTWVGVVPLS 830
>dbj|GAU35627.1| hypothetical protein TSUD_30450 [Trifolium subterraneum]
Length = 1475
Score = 194 bits (492), Expect = 2e-52
Identities = 107/277 (38%), Positives = 148/277 (53%), Gaps = 12/277 (4%)
Frame = +2
Query: 2 SNLRKKCIQLDVACPLCNAAPETLEHLFSEHIFLECNVTRLALFASRLAIHPPLQTDILE 181
+NL KK I LD+ CPLC+ E+ HLF L+C++ +L LFAS L H PLQ D+ +
Sbjct: 1178 ANLHKKGISLDLQCPLCHHEVESTNHLF-----LQCDLMKLTLFASHLGSHMPLQVDLYD 1232
Query: 182 WLLKWLTCRDTEGAQLFCIMIWR---AKNEAVFNNKKPDPIRIAEAAVEFITEYIAANSS 352
W+ WLTC DT QLFC ++W+ +N VF K DP+ + + + F+ E+ AN
Sbjct: 1233 WIFSWLTCHDTLDTQLFCTLLWKFWATRNNVVFRGDKLDPVCLVDEVMSFVQEFNEANPP 1292
Query: 353 RL-HFSLQEQQAPIPANHLGTCLYVDVGSFNDGTTCWGLCVVNADGDIIYSACKRDNIAV 529
R SL + ++VD G +G T WGL + N D +SACK D+IAV
Sbjct: 1293 RQGRVSLPLTTVTPSISRPSFSVFVDAGCNLNGPTVWGLVLKNHDRITTFSACKYDDIAV 1352
Query: 530 D--------IRWGMQQVLEMNFVPDAIYSDAQVVTLCISKRFHVASIEHIMQDCRSLLEL 685
+ +RW +Q V E I+SDA V CI + + +IE + QDCR LL
Sbjct: 1353 EPVMAEALGVRWAIQFVREQGLHSVCIFSDAANVVDCICNKVKLDAIEMVAQDCRELLSS 1412
Query: 686 ILGCSVNHIRRDGNLVAHRLVGLAKRFGNENWLGPPP 796
+ SV +RRD N+ AH L LA+ GN W+G P
Sbjct: 1413 LPNVSVLFVRRDQNIDAHNLASLARLVGNRTWVGAAP 1449
>gb|AFK38936.1| unknown [Medicago truncatula]
Length = 297
Score = 164 bits (415), Expect = 2e-45
Identities = 94/280 (33%), Positives = 145/280 (51%), Gaps = 15/280 (5%)
Frame = +2
Query: 5 NLRKKCIQLDVACPLCNAAPETLEHLFSEHIFLECNVTRLALFASRLAIHPPLQTDILEW 184
NLR++ + LD CPLC A E+ S H+F+ C +T FAS L PP QTD+ W
Sbjct: 14 NLRRRGVVLDTVCPLCFDADES-----SNHLFMACPMTLQVWFASPLGFQPPPQTDLNAW 68
Query: 185 LLKWLTCRDTEGAQLFCIMIWRA---KNEAVFNNKKPDPIRIAEAAVEFITEYIAANSSR 355
L WL+ ++ QLFC+ +W+ +N+A+FN +P +A +A +F++E+ AN +R
Sbjct: 69 LQSWLSAKEPLAVQLFCVCLWKIWFFRNQAIFNQVVFEPRMVAASAHDFVSEFNLANPTR 128
Query: 356 ----LHFSLQEQQAPIPANHLGTCLYVDVGSFNDGTTCWGLCVVNADGDIIYSACKRDNI 523
L Q AP P + L +D G G WGL + N + +++++A + +I
Sbjct: 129 SVDRLQIPAQVWIAP-PTDFLKA--NIDAGRDKHGKVTWGLVIRNHESEVLFAATQSPDI 185
Query: 524 AVD--------IRWGMQQVLEMNFVPDAIYSDAQVVTLCISKRFHVASIEHIMQDCRSLL 679
D +RWG+Q VLE+ DA VV C + +ASI + DC L
Sbjct: 186 MADPLLVETLGLRWGIQTVLELQLSNVMFELDASVVVKCFNGLSTIASISPFISDCHDLF 245
Query: 680 ELILGCSVNHIRRDGNLVAHRLVGLAKRFGNENWLGPPPV 799
++G SV+ + R N+ AH L +AK G+ W+G P+
Sbjct: 246 GSLVGSSVSFVNRSCNVAAHELAQVAKSIGSRTWVGNAPL 285
>dbj|GAU35964.1| hypothetical protein TSUD_207680 [Trifolium subterraneum]
Length = 198
Score = 144 bits (363), Expect = 6e-39
Identities = 79/180 (43%), Positives = 108/180 (60%), Gaps = 8/180 (4%)
Frame = +2
Query: 2 SNLRKKCIQLDVACPLCNAAPETLEHLFSEHIFLECNVTRLALFASRLAIHPPLQTDILE 181
+ L+ K I LD+ CPLC+ LE + H+FL+C++ + LFAS L H PL TD+
Sbjct: 13 AKLKNKGISLDLLCPLCH-----LEEESASHLFLQCDLMKFTLFASHLGFHVPLNTDLHY 67
Query: 182 WLLKWLTCRDTEGAQLFCIMIWR---AKNEAVFNNKKPDPIRIAEAAVEFITEYIAAN-- 346
W+LKWLTC+D G+QLFC ++W+ A N VFN + +P+RIAE A+ F+ EY AAN
Sbjct: 68 WILKWLTCQDALGSQLFCTLLWKFWTAINNVVFNGIQLEPVRIAEEAMSFVQEYNAANPI 127
Query: 347 -SSRLHFSLQE--QQAPIPANHLGTCLYVDVGSFNDGTTCWGLCVVNADGDIIYSACKRD 517
R+ SL AP P ++VDVG G T WGL + N D + ++SACKRD
Sbjct: 128 KRGRISSSLPNILPAAPRPL----FSIFVDVGCCVLGPTTWGLVIKNQDCNCVFSACKRD 183
>dbj|GAU30026.1| hypothetical protein TSUD_161120 [Trifolium subterraneum]
Length = 1957
Score = 152 bits (384), Expect = 6e-38
Identities = 97/283 (34%), Positives = 146/283 (51%), Gaps = 20/283 (7%)
Frame = +2
Query: 8 LRKKCIQLDVACPLCNAAPETLEHLFSEHIFLECNVTRLALFASRLAIHPPLQTDILEWL 187
L++K + LD CPLC A E SEH+F++C + + F+S L +H P Q + W+
Sbjct: 1419 LQRKGVILDTICPLCFEAEEN-----SEHLFMKCRLAQQTWFSSCLGLHVPSQMSLKNWM 1473
Query: 188 LKWLTCRDTEGAQLFCIM---IWRAKNEAVFNNKKPDPIRIAEAAVEFITEYIAANSSRL 358
+WL ++ +QLF I IW+ +N+ VF N DP IA AA +F E+ AN
Sbjct: 1474 CEWLISKNQSASQLFGITLSKIWKGRNQVVFQNALFDPCHIAIAAADFTLEFNCANPPN- 1532
Query: 359 HFSLQEQQAP-IPANHLGTC-------LYVDVGSFNDGTTCWGLCVVNADGDIIYSACKR 514
E P I A C L VD G FNDG +G+ V + G++ ++A K
Sbjct: 1533 -----EAAVPVITATETWCCPPTGMSKLNVDAGCFNDGLLGFGMVVRDNLGNVCFAATKL 1587
Query: 515 DNI--------AVDIRWGMQQVLEMNFVPDAIY-SDAQVVTLCISKRFHVASIEHIMQDC 667
+ A+ +RW + +L N V I +D++VV C+ ++ IE+I+ DC
Sbjct: 1588 EKKQASPTLAEALALRWCLHWILSSNQVGHFIVETDSEVVVKCLQGVSSLSEIENIILDC 1647
Query: 668 RSLLELILGCSVNHIRRDGNLVAHRLVGLAKRFGNENWLGPPP 796
++ + CSV IRR N+VAH LVG+AK G+ +W+G P
Sbjct: 1648 SDIMSNLSNCSVVFIRRCKNIVAHSLVGVAKHVGSRSWVGYIP 1690
>dbj|GAU47092.1| hypothetical protein TSUD_369250 [Trifolium subterraneum]
Length = 335
Score = 144 bits (363), Expect = 2e-37
Identities = 92/283 (32%), Positives = 142/283 (50%), Gaps = 14/283 (4%)
Frame = +2
Query: 2 SNLRKKCIQLDVACPLCNAAPETLEHLFSEHIFLECNVTRLALFASRLAIHPPLQTDILE 181
+ L KK + LD CPLC E EHLF + C +L FAS L +H P D+
Sbjct: 51 ARLAKKGLTLDPWCPLCYQQVEDYEHLF-----MSCPFAKLTWFASPLDLHAPSNVDVNS 105
Query: 182 WLLKWLTCRDTEGAQLFCIM--IWRAKNEAVFNNKKPDPIRIAEAAVEFITEYIAANSSR 355
W+L+ L+ EG Q+FC M IW +N+ +F + P +A +A F+ E+
Sbjct: 106 WVLQGLSNPLVEGVQIFCTMSKIWFHRNKLIFKQQAFVPHEVASSASSFVAEFSPTFLRE 165
Query: 356 LHFSLQEQ-QAPIPANHLGTCLYVDVGSFNDGTTCWGLCVVNADGDIIYSACKRDNI--- 523
++ + + +A + + + VD GSF++G+T WGL V + + +I SAC+ + I
Sbjct: 166 IYMNTSDVLEASQVVSPVCNRICVDAGSFSNGSTGWGLIVKDHESSVILSACRFEEIYTC 225
Query: 524 -----AVDIRWGMQQVLEMNFVPDAIYSDAQVVTLCISKRFHVASIEHIMQDCRSLLELI 688
A+ IRW +Q +++N+ I SDA + I + A + I+QDC SL
Sbjct: 226 PILAEALGIRWAIQTAIDLNYNQVTIVSDALTIVKGIEGKTCPAEVALIVQDCISLCSNF 285
Query: 689 LGCSVNHIRRDGNLVAHRLVGLAKRFGNENWLGPPP---VNCN 808
+ +V +++R N AH LV L+K G W G P V CN
Sbjct: 286 MHVAVVYVKRTLNTEAHNLVQLSKHVGCRTWSGIIPNLAVVCN 328
>dbj|GAU41525.1| hypothetical protein TSUD_140560 [Trifolium subterraneum]
Length = 1610
Score = 145 bits (367), Expect = 1e-35
Identities = 78/210 (37%), Positives = 120/210 (57%), Gaps = 12/210 (5%)
Frame = +2
Query: 5 NLRKKCIQLDVACPLCNAAPETLEHLFSEHIFLECNVTRLALFASRLAIHPPLQTDILEW 184
NL+KK I LD +CPLC+ E HLF + CN+ +LALFAS L HPP+ D+ W
Sbjct: 1406 NLKKKGISLDTSCPLCHNDSENAHHLF-----MHCNMLKLALFASPLGCHPPMNVDLNCW 1460
Query: 185 LLKWLTCRDTEGAQLFCIMIWR---AKNEAVFNNKKPDPIRIAEAAVEFITEYIAANS-S 352
LL+WL C D GAQLFC ++W+ A+N+ VFN +P+R+A++A+ F+ E+ AN+ S
Sbjct: 1461 LLEWLNCSDKLGAQLFCTILWKFWFARNQYVFNGYPIEPLRLAQSALLFVQEFNEANNLS 1520
Query: 353 RLHFSLQEQQAPIPANHLGTCLYVDVGSFNDGTTCWGLCVVNADGDIIYSACKRDNI--- 523
R A+ ++VD G F++ T WGL + + G++ ++AC+R++I
Sbjct: 1521 RSTHVATRVHNTNSASPCQFSMFVDAGCFSNARTGWGLVLKDQRGNVTWNACRREDIEVT 1580
Query: 524 -----AVDIRWGMQQVLEMNFVPDAIYSDA 598
A+++RW +Q L + DA
Sbjct: 1581 PILAEALELRWAIQSALSQGIQSISFNCDA 1610
>dbj|GAU29911.1| hypothetical protein TSUD_148190 [Trifolium subterraneum]
Length = 482
Score = 134 bits (338), Expect = 1e-32
Identities = 84/274 (30%), Positives = 137/274 (50%), Gaps = 14/274 (5%)
Frame = +2
Query: 2 SNLRKKCIQLDVACPLCNAAPETLEHLFSEHIFLECNVTRLALFASRLAIHPPLQTDILE 181
+ L KK + LD PLC E EHLF + C ++L FAS L +H P D+
Sbjct: 195 ARLAKKGLTLDPYFPLCYQQAEDYEHLF-----MSCPFSKLTWFASPLGLHAPSNVDVNS 249
Query: 182 WLLKWLTCRDTEGAQLFCIMIWRA---KNEAVFNNKK--PDPIRIAEAAVEFITEYIAAN 346
W+L+ L+ EG Q+FC +W+ +N+ +F + P +A +A F E+
Sbjct: 250 WVLQGLSNPLVEGVQIFCTSLWKIWFHRNKLIFEQQAFVPHEYEVASSASSFGAEFSPTF 309
Query: 347 SSRLHFSLQEQ-QAPIPANHLGTCLYVDVGSFNDGTTCWGLCVVNADGDIIYSACKRDNI 523
+ + + +A + + + VD G F++G+T WGL V + +G +I+SAC+ + I
Sbjct: 310 LREIDMNTSDVLEASQVVSPICNRICVDAGCFSNGSTGWGLIVKDHEGSVIFSACRFEEI 369
Query: 524 --------AVDIRWGMQQVLEMNFVPDAIYSDAQVVTLCISKRFHVASIEHIMQDCRSLL 679
A+ IRW ++ +++N+ I SDA + I + A +E I+QDC SL
Sbjct: 370 HTSPILAEALAIRWAIRTAIDLNYNQVTIVSDALTIVKDIEGKTCPAKVELIVQDCISLC 429
Query: 680 ELILGCSVNHIRRDGNLVAHRLVGLAKRFGNENW 781
+ +V +++R N AH LV L+K G W
Sbjct: 430 SNFMHVAVVYVKRTLNTEAHNLVQLSKHVGCRTW 463
>dbj|GAU39028.1| hypothetical protein TSUD_59840 [Trifolium subterraneum]
Length = 1626
Score = 131 bits (329), Expect = 1e-30
Identities = 84/279 (30%), Positives = 138/279 (49%), Gaps = 15/279 (5%)
Frame = +2
Query: 8 LRKKCIQLDVACPLCNAAPETLEHLFSEHIFLECNVTRLALFASRLAIHPPLQTDILEWL 187
L KK I LD CPLC E +EH+F++C +++ F+S L +H P + W+
Sbjct: 1341 LEKKGITLDTTCPLCFNDIEC-----NEHLFMQCPLSKQVWFSSPLGLHAPNNFSLNSWM 1395
Query: 188 LKWLTCRDTEGAQLFCI---MIWRAKNEAVFNNKKPDPIRIAEAAVEFITEYIAANSSRL 358
WL+ D +QLF MIW+ +N+ +F N+K PI +A A+ +F+ E+ + S
Sbjct: 1396 QLWLSNPDKLASQLFSTTLWMIWKGRNKLIFKNEKFCPIYVAAASSDFVAEFNSGTCSFE 1455
Query: 359 HFSLQEQQAPIPANHLGTC-LYVDVGSFNDGTTCWGLCVVNADGDIIYSACKRDNIAVD- 532
+ + G + +D G F++GTT WG+ + N G + ++A + I V
Sbjct: 1456 NIPSCDNPGKWEHPEQGKLKVNIDAGCFSNGTTGWGMIMRNHLGMVEFAATHLEKIKVSS 1515
Query: 533 -------IRWGMQQVLEMNFVPDAIY-SDAQVVTLCISKRFHVASIEHIMQDCRSLLELI 688
+RW +Q + I SD++V C++ +E+I+QDCR+ L +
Sbjct: 1516 TLAETMALRWCLQWIQASTHHEHIIIESDSEVSVKCLNGSICDVLVENIIQDCRNFLSSL 1575
Query: 689 LGCSVNHIRRDGNLVAHRLVGLAKRFGNENWLG--PPPV 799
V +RR N+ H L LA+ G ++W+G P PV
Sbjct: 1576 PNVIVVFVRRSKNVATHELASLARTVGAKSWVGCVPGPV 1614
>dbj|GAU39667.1| hypothetical protein TSUD_60340 [Trifolium subterraneum]
Length = 1063
Score = 129 bits (323), Expect = 7e-30
Identities = 84/288 (29%), Positives = 137/288 (47%), Gaps = 23/288 (7%)
Frame = +2
Query: 8 LRKKCIQLDVACPLCNAAPETLEHLFSEHIFLECNVTRLALFASRLAIHPPLQTDILEWL 187
L +K + LD CPLC ET EHLF + C V R F S L +H P ++ +W+
Sbjct: 773 LEQKGVALDPICPLCYDGEETQEHLF-----MHCQVIRRFWFLSPLGLHVPADVNLFKWM 827
Query: 188 LKWLTCRDTEGAQLFCIM---IWRAKNEAVFNNKKPDPIRIAE----------AAVEFIT 328
WL+ + QLF + IW+ +N++VFN K P+ + + + A I+
Sbjct: 828 EHWLSNSNFMATQLFSLSLWTIWKMRNDSVFNKKYPNCMIVVQNVSILAEEFNLACNLIS 887
Query: 329 EYIAANSSRLHFSLQEQQAPIPANHLGTCLYVDVGSFNDGTTCWGLCVVNADGDIIYSAC 508
++ ++ + PI + +D G F + TCWGL N G + ++A
Sbjct: 888 NVVSEPIINSDVDVRWELPPIGFLKVN----IDAGCFKNNYTCWGLLDRNHKGIVQFAAT 943
Query: 509 KRDNI--------AVDIRWGMQQVLEMNFVPDAIYSDAQVVTLCISKRFHVASIEHIMQD 664
KR+ I A+ ++W ++ + + N + DA+ V C+ +R ++ IE I+ D
Sbjct: 944 KRERITCSPLLVEALSLKWCLRWIKDQNLQNVEVEMDAENVVNCLLRRINIVEIELIVVD 1003
Query: 665 CRSLLELILGCSVNHIRRDGNLVAHRLVGLAKRFGNENWLG--PPPVN 802
C +L +L SV ++ N AH LVG+A G+ W G P PV+
Sbjct: 1004 CLYILLSLLNVSVLVVKSCKNKAAHGLVGVAMNLGSLLWFGNVPEPVS 1051
>gb|PNX85413.1| ribonuclease H [Trifolium pratense]
gb|PNY00296.1| ribonuclease H [Trifolium pratense]
Length = 207
Score = 117 bits (293), Expect = 2e-28
Identities = 70/182 (38%), Positives = 98/182 (53%), Gaps = 11/182 (6%)
Frame = +2
Query: 287 DPIRIAEAAVEFITEYIAANSSRLHFSLQEQQAPIPANHLGTCL---YVDVGSFNDGTTC 457
DP +A A+ F+ E+ AN SR +L Q P+ T + +VD G N G T
Sbjct: 2 DPTFLALDALSFVQEFNEANPSRNRRALVSQSISEPSRSTCTSMNSMFVDAGCCNSGHTV 61
Query: 458 WGLCVVNADGDIIYSACKRDNI--------AVDIRWGMQQVLEMNFVPDAIYSDAQVVTL 613
WGL + N +G+ ++SACKR++I A+ +RW +Q + +IYSDA V
Sbjct: 62 WGLVLRNLNGETVFSACKREDITAEPLLAEALGVRWALQVATDQGINSVSIYSDAANVVN 121
Query: 614 CISKRFHVASIEHIMQDCRSLLELILGCSVNHIRRDGNLVAHRLVGLAKRFGNENWLGPP 793
CI+KR + A+I I QDCR+L+ + SV I R N AH LV LAK G+ WLG
Sbjct: 122 CINKRSNFAAINLIAQDCRNLMAGLGNVSVMFISRTQNCDAHNLVSLAKVVGSRTWLGVA 181
Query: 794 PV 799
P+
Sbjct: 182 PL 183
>gb|PNX58626.1| ribonuclease H, partial [Trifolium pratense]
Length = 217
Score = 114 bits (286), Expect = 3e-27
Identities = 69/195 (35%), Positives = 101/195 (51%), Gaps = 12/195 (6%)
Frame = +2
Query: 254 KNEAVFNNKKPDPIRIAEAAVEFITEYIAANSSRLHFSLQEQQAPIPANHLGT----CLY 421
+N AVFN + DP R+A A+ F+ ++ AN R + A +P T L+
Sbjct: 2 RNAAVFNGVQLDPGRLAIDAMSFVHDFNEANPPRCR---RAPVAHVPIQPGMTNPIFSLF 58
Query: 422 VDVGSFNDGTTCWGLCVVNADGDIIYSACKRDNIAVD--------IRWGMQQVLEMNFVP 577
VD G N G T WGL + N+DG+ + SACKR++ VD +RW +Q V++
Sbjct: 59 VDAGCSNSGHTVWGLVLRNSDGETVLSACKREDFYVDPLMAEALGVRWALQLVVDQGINS 118
Query: 578 DAIYSDAQVVTLCISKRFHVASIEHIMQDCRSLLELILGCSVNHIRRDGNLVAHRLVGLA 757
+IYSDA V CI++ A+I I +DCR L+ + V + R N AH L LA
Sbjct: 119 VSIYSDAANVVNCINRNSSFAAINLIAEDCRKLMNRLTNVCVLFVSRTQNSDAHNLASLA 178
Query: 758 KRFGNENWLGPPPVN 802
+ GN W+G P++
Sbjct: 179 RIMGNRTWVGVVPLS 193
>gb|PNY04967.1| ribonuclease H [Trifolium pratense]
Length = 207
Score = 114 bits (285), Expect = 3e-27
Identities = 67/190 (35%), Positives = 99/190 (52%), Gaps = 8/190 (4%)
Frame = +2
Query: 242 IWRAKNEAVFNNKKPDPIRIAEAAVEFITEYIAANSSRLHFSLQEQQAPIPANHLGTCLY 421
+W +N+ VF K P P IA AA++ + E+ A + Q + A +
Sbjct: 1 MWFFRNQVVFQQKIPTPPDIAIAALDIVHEFNLAVPKKSKQRQQHAASEPAATLCSHLIQ 60
Query: 422 VDVGSFNDGTTCWGLCVVNADGDIIYSACKRDNIAVD--------IRWGMQQVLEMNFVP 577
VD G F DG T +G + + G I +SAC+++N+ VD IRW +Q + N
Sbjct: 61 VDAGCFPDGYTTFGCVIKDCSGMISFSACRKENLLVDPLLAEALAIRWCLQVAKDQNLKE 120
Query: 578 DAIYSDAQVVTLCISKRFHVASIEHIMQDCRSLLELILGCSVNHIRRDGNLVAHRLVGLA 757
I SDA VV CI +A IE I+ DC+ L+ S+N++ RD N++AHRLVG A
Sbjct: 121 VIIQSDALVVVECIRGSNSIACIELIVTDCKLLMSTFSSVSINYVCRDLNVLAHRLVGYA 180
Query: 758 KRFGNENWLG 787
+ G ++WLG
Sbjct: 181 MQVGCKSWLG 190
>dbj|GAU21787.1| hypothetical protein TSUD_329120, partial [Trifolium subterraneum]
Length = 734
Score = 119 bits (299), Expect = 9e-27
Identities = 81/273 (29%), Positives = 120/273 (43%), Gaps = 8/273 (2%)
Frame = +2
Query: 2 SNLRKKCIQLDVACPLCNAAPETLEHLFSEHIFLECNVTRLALFASRLAIHPPLQTDILE 181
+NL K I+LD+ CPLC E+ S+H+FL+C++ +L LFAS L
Sbjct: 329 TNLHNKGIKLDLQCPLCFREEES-----SQHLFLKCDIFKLTLFASHLG----------- 372
Query: 182 WLLKWLTCRDTEGAQLFCIMIWRAKNEAVFNNKKPDPIRIAEAAVEFITEYIAANSSRLH 361
+N +VFN K DP R+A F+ ++ AN +
Sbjct: 373 ------------------------RNASVFNGIKLDPGRLALDVTSFVHDFNEANPPSM- 407
Query: 362 FSLQEQQAPIPANHLGTCLYVDVGSFNDGTTCWGLCVVNADGDIIYSACKRDNIAVD--- 532
G T WGL + N+DG+ I+SACKR+ I+VD
Sbjct: 408 ---------------------------SGPTVWGLVLRNSDGETIFSACKREEISVDPLM 440
Query: 533 -----IRWGMQQVLEMNFVPDAIYSDAQVVTLCISKRFHVASIEHIMQDCRSLLELILGC 697
+RW +Q V++ +I+SDA V CI+++ A+I I +DCR+L+ +
Sbjct: 441 AEALGVRWALQLVVDQGINSVSIHSDAANVVNCINRKSSFAAINLIAEDCRNLMTCLANV 500
Query: 698 SVNHIRRDGNLVAHRLVGLAKRFGNENWLGPPP 796
+ R N AH L LA+ GN W G P
Sbjct: 501 CDLFVSRTQNSDAHNLASLARIMGNRTWQGVAP 533
>dbj|GAU32098.1| hypothetical protein TSUD_292220 [Trifolium subterraneum]
Length = 240
Score = 112 bits (280), Expect = 3e-26
Identities = 73/243 (30%), Positives = 115/243 (47%), Gaps = 11/243 (4%)
Frame = +2
Query: 101 LECNVTRLALFASRLAIHPPLQTDILEWLLKWLTCRDTEGAQLFCIMIWRAKNEAVFNNK 280
+ CN+ +L LFAS L HPPL D+ WL N+ VF
Sbjct: 1 MHCNLLKLVLFASPLGCHPPLNVDLNCWL-----------------------NQTVFKGT 37
Query: 281 KPDPIRIAEAAVEFITEYIAAN-SSRLHFSLQE--QQAPIPANHLGTCLYVDVGSFNDGT 451
+ + +A+ A+ F+ E+ AN SR + +P+P+ ++VD ++
Sbjct: 38 PFEAVSLAQPALLFVQEFNDANIQSRPSQAATRVRNSSPVPSRQFS--MFVDASCLSNAQ 95
Query: 452 TCWGLCVVNADGDIIYSACKRDNI--------AVDIRWGMQQVLEMNFVPDAIYSDAQVV 607
WG+ + +G +++SACKRDNI A+ +RW +Q + + DA V
Sbjct: 96 IGWGIVFKDHNGAVLWSACKRDNIVVTPIIADALGLRWAIQTSISQGIQCLSFACDALEV 155
Query: 608 TLCISKRFHVASIEHIMQDCRSLLELILGCSVNHIRRDGNLVAHRLVGLAKRFGNENWLG 787
CI+ + VASI+ +++DC +LLE I V H+ R N AH L LA+ G+ W+G
Sbjct: 156 VNCINSKCVVASIDPVIKDCTNLLENIPYAMVYHVSRKLNREAHDLASLARYVGSRTWMG 215
Query: 788 PPP 796
P
Sbjct: 216 NAP 218
>dbj|GAU37237.1| hypothetical protein TSUD_375390 [Trifolium subterraneum]
Length = 246
Score = 112 bits (279), Expect = 6e-26
Identities = 69/199 (34%), Positives = 98/199 (49%), Gaps = 15/199 (7%)
Frame = +2
Query: 245 WRAKNEAVFNNKKPDPIRIAEAAVEFITEYIAANSSRL------HFSLQEQQA-PIPANH 403
W +N VFN K DP R+A F+ ++ AN R H S+Q PI +
Sbjct: 5 WNGRNATVFNGIKLDPGRLALDVTSFVHDFNEANPPRCRRAPVAHVSIQPSLVTPIFS-- 62
Query: 404 LGTCLYVDVGSFNDGTTCWGLCVVNADGDIIYSACKRDNIAVD--------IRWGMQQVL 559
L+VD G G WGL + N+DG+ I S CKR+ I+VD +RW +Q V+
Sbjct: 63 ----LFVDAGCSMSGPIVWGLVLRNSDGETILSVCKREEISVDPLMAETLGVRWALQLVI 118
Query: 560 EMNFVPDAIYSDAQVVTLCISKRFHVASIEHIMQDCRSLLELILGCSVNHIRRDGNLVAH 739
+ +I+SDA V CI+++ A+I I +DCR+L+ + V + R N AH
Sbjct: 119 DQGINSVSIHSDAANVVNCINRKSSFAAINLIAEDCRNLMTCLANVCVLFVSRTQNSDAH 178
Query: 740 RLVGLAKRFGNENWLGPPP 796
L LA+ GN W G P
Sbjct: 179 NLASLARIMGNRTWQGVSP 197