BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus22_contig00020589
         (1476 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KHN21230.1| Retrovirus-related Pol polyprotein from transposo...   634   0.0  
gb|KYP53274.1| Retrovirus-related Pol polyprotein from transposo...   496   e-165
dbj|GAU19342.1| hypothetical protein TSUD_336290 [Trifolium subt...   483   e-153
gb|PNY10806.1| histone deacetylase [Trifolium pratense]               479   e-152
gb|PNX93094.1| histone deacetylase, partial [Trifolium pratense]      479   e-151
gb|PNX94499.1| retrovirus-related Pol polyprotein from transposo...   459   e-145
gb|PNX89511.1| retrovirus-related Pol polyprotein from transposo...   397   e-131
dbj|GAU35295.1| hypothetical protein TSUD_54540 [Trifolium subte...   355   e-108
gb|PKU81996.1| Retrovirus-related Pol polyprotein from transposo...   353   e-107
gb|KYP62479.1| Retrovirus-related Pol polyprotein from transposo...   314   e-101
gb|PNX95703.1| retrovirus-related Pol polyprotein from transposo...   333   e-100
gb|KYP31309.1| Retrovirus-related Pol polyprotein from transposo...   300   5e-96
gb|PNX66338.1| retrovirus-related Pol polyprotein from transposo...   300   6e-96
gb|PNX77046.1| retrovirus-related Pol polyprotein from transposo...   308   7e-96
gb|PNY02741.1| retrovirus-related Pol polyprotein from transposo...   320   4e-95
gb|PNX84939.1| retrovirus-related Pol polyprotein from transposo...   303   4e-94
gb|KYP70746.1| Retrovirus-related Pol polyprotein from transposo...   295   2e-93
gb|PNX99662.1| retrovirus-related Pol polyprotein from transposo...   313   1e-92
gb|KYP46114.1| Retrovirus-related Pol polyprotein from transposo...   300   2e-92
gb|PNX93258.1| histone deacetylase, partial [Trifolium pratense]      315   8e-92

>gb|KHN21230.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1429

 Score =  634 bits (1636), Expect = 0.0
 Identities = 318/495 (64%), Positives = 367/495 (74%), Gaps = 4/495 (0%)
 Frame = -3

Query: 1474 QTDWGGEFRPFRKFLTDLGIIHRVICPQTHHQNGVVERKHRHIVETGLSLLSHSSLPYFY 1295
            Q+DWGGEFR F  +L+ LGIIHR+ICP THHQNGVVERKHRHIVE GLSLLSHSSLPY Y
Sbjct: 637  QSDWGGEFRSFTSYLSQLGIIHRIICPHTHHQNGVVERKHRHIVEMGLSLLSHSSLPYHY 696

Query: 1294 WDHAFHTAVYLINRLPAAHSHKIPLQTLLHKYPDFKFLKSFGCACYPLLTPYNNPKFQFR 1115
            WDHAFHTAVY+INRLPA+H+H IPL+ L +  PD+ FL++FGCACYPLLTPYNNPKFQ+R
Sbjct: 697  WDHAFHTAVYIINRLPASHNHCIPLKVLFNNVPDYNFLRAFGCACYPLLTPYNNPKFQYR 756

Query: 1114 SSECTFLGYSSSHLGYKCLDRKTGRIYISKDVIFNENHFPFQYKVTDANPNTCQSPTVTQ 935
            S EC FLGYS+   GYKCLD K+GRIYISKDV+FNE HFP+Q       P TC SP  T 
Sbjct: 757  SKECIFLGYSTR--GYKCLDNKSGRIYISKDVLFNEKHFPYQI----TPPTTC-SPNQTV 809

Query: 934  YKTA----LNVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTATPLHTPLPSD 767
               A    +N +                                    +A+P  T LPS 
Sbjct: 810  TSAAPLGVVNHIPQQTPHTPNNLTPNNQPTPHTPTTFPSHTSSPYISASASPTPT-LPST 868

Query: 766  AXXXXXXXXXXXXXXXXXXPQNNHPMQTRSKTGHLKPPLYPSLHLTTTDPTTVQQALTSP 587
            A                    N H M TRSKTGHLKPPL+P+++LTTT+PTTVQQAL+S 
Sbjct: 869  ASSTIDPNSTPTSSPSPTT--NTHHMLTRSKTGHLKPPLFPTINLTTTEPTTVQQALSSI 926

Query: 586  HWAQAMQQEFDALTANHTWNLVPLPAGKRAIGSKWIFRIKQNADGSINRYKARLVAKGYL 407
            HW +AMQQE+ AL AN TW+LVPLP  KRAIG KWIFRIK+N DG+IN+YKARLVAKG+ 
Sbjct: 927  HWTEAMQQEYQALQANKTWSLVPLPPHKRAIGCKWIFRIKENPDGTINKYKARLVAKGFN 986

Query: 406  QKHGQDYNDTFSPVVKPVTIRIILTLALTYKWAIRQLDVNNAFLHGHLEEDVYMQQPQGF 227
            QK+GQDY+DT+SPVVKP+T+R +LT+ALT KW + QLDVNNAFL+G L EDVYMQQPQGF
Sbjct: 987  QKYGQDYSDTYSPVVKPITVRTVLTIALTSKWPLIQLDVNNAFLNGQLHEDVYMQQPQGF 1046

Query: 226  IQGDSSLVCHLKKAIYGLKQAPRAWYGSLTKTLCSFGFQQSKCDPSLLIYNNRGCQLMVL 47
            IQG+S+LVC L KAIYGLKQAPRAWY SLT TL SFGFQQSKCDPSLLI+N  GC L++L
Sbjct: 1047 IQGESTLVCKLHKAIYGLKQAPRAWYESLTNTLISFGFQQSKCDPSLLIFNKHGCCLLIL 1106

Query: 46   IYVDDILITGSSLTA 2
            IYVDDI+ITGSS TA
Sbjct: 1107 IYVDDIIITGSSNTA 1121


>gb|KYP53274.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 839

 Score =  496 bits (1277), Expect = e-165
 Identities = 253/491 (51%), Positives = 319/491 (64%), Gaps = 1/491 (0%)
 Frame = -3

Query: 1474 QTDWGGEFRPFRKFLTDLGIIHRVICPQTHHQNGVVERKHRHIVETGLSLLSHSSLPYFY 1295
            QTDWGGEFR F  +L   GI HR+ICP THHQNGVVERKHRHIVE GL+LL+ + LP  +
Sbjct: 275  QTDWGGEFRSFTSYLAQHGIHHRIICPHTHHQNGVVERKHRHIVELGLTLLAQAHLPMHF 334

Query: 1294 WDHAFHTAVYLINRLPAAHSHK-IPLQTLLHKYPDFKFLKSFGCACYPLLTPYNNPKFQF 1118
            WD+AF T+VYLINRLP++   + +P + L H  PD+ FL+ FGC+C+P L PYN  K QF
Sbjct: 335  WDYAFLTSVYLINRLPSSSIQQDVPFRKLFHHLPDYNFLRVFGCSCFPHLRPYNKTKLQF 394

Query: 1117 RSSECTFLGYSSSHLGYKCLDRKTGRIYISKDVIFNENHFPFQYKVTDANPNTCQSPTVT 938
            RS EC FLGYS+SH GYKCL   +GR++ISKDVIF EN FP+    + + P+   S ++T
Sbjct: 395  RSQECVFLGYSTSHKGYKCL-APSGRVFISKDVIFCENRFPYPTLFSPSTPSPSSS-SIT 452

Query: 937  QYKTALNVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTATPLHTPLPSDAXX 758
                  N                                     +T+ P H   P     
Sbjct: 453  VPLVVTNPQAPITSTSHTSPSSPIFTDSSPSQPSHTSPTPNPSASTSLPTHVEAPPI--- 509

Query: 757  XXXXXXXXXXXXXXXXPQNNHPMQTRSKTGHLKPPLYPSLHLTTTDPTTVQQALTSPHWA 578
                              N HPM TR+K G +KP L P+L LT  +P   +QAL S  W 
Sbjct: 510  ------------------NLHPMTTRAKAGIVKPRLQPTLLLTHFEPKNTKQALASDTWL 551

Query: 577  QAMQQEFDALTANHTWNLVPLPAGKRAIGSKWIFRIKQNADGSINRYKARLVAKGYLQKH 398
             AM+QE++AL AN TW LVPLP+ + AIG KW+FRIK+N DG+++++KARLVAKG+ Q+ 
Sbjct: 552  AAMKQEYNALMANGTWTLVPLPSHRTAIGCKWVFRIKENPDGTVHKHKARLVAKGFHQQF 611

Query: 397  GQDYNDTFSPVVKPVTIRIILTLALTYKWAIRQLDVNNAFLHGHLEEDVYMQQPQGFIQG 218
            G DY +TFSPVVKPVTIR+ILTLALT+ W+I+QLDVNNAFL+G+LEE+VYM QP GF   
Sbjct: 612  GFDYTETFSPVVKPVTIRLILTLALTHHWSIQQLDVNNAFLNGNLEEEVYMSQPPGFESS 671

Query: 217  DSSLVCHLKKAIYGLKQAPRAWYGSLTKTLCSFGFQQSKCDPSLLIYNNRGCQLMVLIYV 38
            D SLVC L KAIYGLKQAPRAW+  L  TL    FQ SKCDPSL +Y++    + +L+YV
Sbjct: 672  DKSLVCKLHKAIYGLKQAPRAWFDKLKATLFHLNFQISKCDPSLFVYSHANNVIYILVYV 731

Query: 37   DDILITGSSLT 5
            DDI+ITG++ T
Sbjct: 732  DDIIITGNNTT 742


>dbj|GAU19342.1| hypothetical protein TSUD_336290 [Trifolium subterraneum]
          Length = 1442

 Score =  483 bits (1243), Expect = e-153
 Identities = 257/502 (51%), Positives = 322/502 (64%), Gaps = 14/502 (2%)
 Frame = -3

Query: 1474 QTDWGGEFRPFRKFLTDLGIIHRVICPQTHHQNGVVERKHRHIVETGLSLLSHSSLPYFY 1295
            Q+DWGGEFRPF  FL  LGI+HR+ CP T HQNG VERKHR IVE GL++LSH+SLP  +
Sbjct: 647  QSDWGGEFRPFTTFLQGLGILHRLTCPHTSHQNGTVERKHRQIVEMGLTMLSHASLPLKF 706

Query: 1294 WDHAFHTAVYLINRLPAAH-SH-KIPLQTLLHKYPDFKFLKSFGCACYPLLTPYNNPKFQ 1121
            WDH F  AV++INR+P++  SH K P   L   +PD+  LK FGC C+P L PY+  KFQ
Sbjct: 707  WDHCFTQAVFIINRVPSSSLSHFKSPYHALFKSHPDYTLLKVFGCLCFPHLRPYHTHKFQ 766

Query: 1120 FRSSECTFLGYSSSHLGYKCLDRKTGRIYISKDVIFNENHFP----FQYKVTDANPNTCQ 953
            F+SS C +LG S  H G+KCLD  TGRIYISKDVIF+E  FP    F    T ++  +  
Sbjct: 767  FKSSPCVYLGVSPQHKGHKCLDA-TGRIYISKDVIFHELKFPYVSMFSSSTTPSSDISMS 825

Query: 952  S----PTVTQYKTALNVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTAT--- 794
            +    P V+  ++    L                                    +A    
Sbjct: 826  TMLLDPCVSDVQSPQFPLSSPSHDSVPCEPSSSPVPSPTVSPTHSSQSISVPLQSAPVAS 885

Query: 793  -PLHTPLPSDAXXXXXXXXXXXXXXXXXXPQNNHPMQTRSKTGHLKPPLYPSLHLTTTDP 617
             PL TPLPS                      N+H M TR+KTG+LKP  Y SL     +P
Sbjct: 886  LPLPTPLPSTIYGQPVISN-----------HNDHSMITRAKTGNLKPKAYLSL----AEP 930

Query: 616  TTVQQALTSPHWAQAMQQEFDALTANHTWNLVPLPAGKRAIGSKWIFRIKQNADGSINRY 437
             TV+ AL+ P W  AMQ E+ AL  N+TW+LVPLP  +RAIG KW+FRIK+N DG++N+Y
Sbjct: 931  KTVKSALSDPQWLAAMQLEYKALMDNNTWSLVPLPPHRRAIGCKWVFRIKENPDGTVNKY 990

Query: 436  KARLVAKGYLQKHGQDYNDTFSPVVKPVTIRIILTLALTYKWAIRQLDVNNAFLHGHLEE 257
            KARLVAKG+ Q  G D+ +TFSPV+KP+TIRIILTLA+T KW ++Q+DVNNAFL+G L+E
Sbjct: 991  KARLVAKGFAQTPGFDFTETFSPVIKPITIRIILTLAVTNKWPVQQIDVNNAFLNGVLQE 1050

Query: 256  DVYMQQPQGFIQGDSSLVCHLKKAIYGLKQAPRAWYGSLTKTLCSFGFQQSKCDPSLLIY 77
            +VYM QP GF   D SLVC L K++YGLKQAPRAWY  LT+TL +FGF +SKCDPSLL++
Sbjct: 1051 EVYMHQPAGFENADRSLVCKLHKSLYGLKQAPRAWYEKLTQTLLTFGFVKSKCDPSLLVH 1110

Query: 76   NNRGCQLMVLIYVDDILITGSS 11
            ++ G    VLIYVDDILITGS+
Sbjct: 1111 SHNGAVTYVLIYVDDILITGSA 1132


>gb|PNY10806.1| histone deacetylase [Trifolium pratense]
          Length = 1441

 Score =  479 bits (1234), Expect = e-152
 Identities = 247/496 (49%), Positives = 312/496 (62%), Gaps = 8/496 (1%)
 Frame = -3

Query: 1474 QTDWGGEFRPFRKFLTDLGIIHRVICPQTHHQNGVVERKHRHIVETGLSLLSHSSLPYFY 1295
            Q+DWGGE+R     LT LGI HRV CP T HQNG VER+HR IVE GL+LLSH+++P  +
Sbjct: 640  QSDWGGEYRSISTLLTSLGINHRVTCPHTSHQNGTVERRHRSIVEIGLTLLSHANMPLNF 699

Query: 1294 WDHAFHTAVYLINRLPAAHSHKI--PLQTLLHKYPDFKFLKSFGCACYPLLTPYNNPKFQ 1121
            WDH+F TAV+L+NRLP A  H    P   L +K PD+  +K FGC C+P L PYN+ K  
Sbjct: 700  WDHSFTTAVFLLNRLPTASLHHFTSPYHALYNKIPDYSSIKGFGCTCFPHLRPYNSHKLD 759

Query: 1120 FRSSECTFLGYSSSHLGYKCLDRKTGRIYISKDVIFNENHF------PFQYKVTDANPNT 959
            FRS++C +LG S  H GYKCL    GR+YISKDV+FNE  F      P   +    N   
Sbjct: 760  FRSTKCVYLGPSPHHKGYKCLS-PDGRVYISKDVVFNELEFPYSILFPNTSRSAPTNTTH 818

Query: 958  CQSPTVTQYKTALNVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTATPLHTP 779
              S  +    + ++                                     + A+   +P
Sbjct: 819  SWSSVIPTLPSIVSGTPPTESAIGSPLIDSSTPISPVPNNVSSAPLPISPQSPASAPSSP 878

Query: 778  LPSDAXXXXXXXXXXXXXXXXXXPQNNHPMQTRSKTGHLKPPLYPSLHLTTTDPTTVQQA 599
             P                     P N HPM TR KTG+LKP ++    L   +P +V+ A
Sbjct: 879  SPVSISPPPDTSLPVKKTKPAVDPTNTHPMVTRGKTGNLKPKVF----LAHKEPHSVKHA 934

Query: 598  LTSPHWAQAMQQEFDALTANHTWNLVPLPAGKRAIGSKWIFRIKQNADGSINRYKARLVA 419
            LT P+W +AM+ E+ AL  N TW+LVPLPA +RAIG KW+FRIK+N DGSIN+YKARLVA
Sbjct: 935  LTDPNWLKAMEAEYSALLHNKTWSLVPLPAHRRAIGCKWVFRIKENPDGSINKYKARLVA 994

Query: 418  KGYLQKHGQDYNDTFSPVVKPVTIRIILTLALTYKWAIRQLDVNNAFLHGHLEEDVYMQQ 239
            KG+ Q+ G D+ +TFSPVVKPVTIRIILTLAL++KW I+Q+D+NNAFL+G L+E+VYM Q
Sbjct: 995  KGFSQEPGFDFKETFSPVVKPVTIRIILTLALSFKWDIQQIDINNAFLNGILQEEVYMSQ 1054

Query: 238  PQGFIQGDSSLVCHLKKAIYGLKQAPRAWYGSLTKTLCSFGFQQSKCDPSLLIYNNRGCQ 59
            P GF  GD SLVC L KA+YGLKQAPRAWY  L + L SFGF  SKCDPSL +Y+++G  
Sbjct: 1055 PPGFGNGDKSLVCKLHKALYGLKQAPRAWYDRLAQALVSFGFHPSKCDPSLFVYSHQGVT 1114

Query: 58   LMVLIYVDDILITGSS 11
            + VL+YVDDIL+TGSS
Sbjct: 1115 MYVLVYVDDILLTGSS 1130


>gb|PNX93094.1| histone deacetylase, partial [Trifolium pratense]
          Length = 1513

 Score =  479 bits (1232), Expect = e-151
 Identities = 254/491 (51%), Positives = 311/491 (63%), Gaps = 3/491 (0%)
 Frame = -3

Query: 1474 QTDWGGEFRPFRKFLTDLGIIHRVICPQTHHQNGVVERKHRHIVETGLSLLSHSSLPYFY 1295
            Q+DWGGEFRPF   L  LGI HR+ CP T HQNG VERKHR IVE GL++LS SS+P  +
Sbjct: 737  QSDWGGEFRPFTTLLNSLGIQHRLTCPHTSHQNGTVERKHRQIVEMGLTMLSQSSIPLKF 796

Query: 1294 WDHAFHTAVYLINRLP--AAHSHKIPLQTLLHKYPDFKFLKSFGCACYPLLTPYNNPKFQ 1121
            WDH+F  AVYLIN+LP  A  S K P   L    PD+  LK FGC C+P L PYN  K Q
Sbjct: 797  WDHSFTQAVYLINKLPSSALPSFKSPHLALFKSQPDYTLLKVFGCLCFPHLRPYNKNKLQ 856

Query: 1120 FRSSECTFLGYSSSHLGYKCLDRKTGRIYISKDVIFNENHFPFQYKVTDANPNTCQSPTV 941
            FRSS C +LG S  H G+KCLD   GRIY+SKDVIF+E+ FP+    T  + +  Q+ + 
Sbjct: 857  FRSSPCVYLGVSPQHKGHKCLDEH-GRIYVSKDVIFHESQFPYP---TMFSISASQNSSE 912

Query: 940  TQYKTALNVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTAT-PLHTPLPSDA 764
             Q +     L                                      T P + PLPS +
Sbjct: 913  NQPEQNNQPLYTSKPDTFTPLNITEQTPTLTISQINSQISQPIKSPAVTHPDNPPLPSIS 972

Query: 763  XXXXXXXXXXXXXXXXXXPQNNHPMQTRSKTGHLKPPLYPSLHLTTTDPTTVQQALTSPH 584
                                NNHPM TR KTG LKP  + +    + +P +V+ AL  P 
Sbjct: 973  H------------------HNNHPMITRCKTGSLKPKTFTA----SLEPASVRSALKDPK 1010

Query: 583  WAQAMQQEFDALTANHTWNLVPLPAGKRAIGSKWIFRIKQNADGSINRYKARLVAKGYLQ 404
            W QAMQ E+ AL  N+TW+LVPLP  K+AIG KWIFR+K+N DGSIN+YKARLVAKG+LQ
Sbjct: 1011 WLQAMQAEYKALIDNNTWSLVPLPPHKKAIGCKWIFRVKENPDGSINKYKARLVAKGFLQ 1070

Query: 403  KHGQDYNDTFSPVVKPVTIRIILTLALTYKWAIRQLDVNNAFLHGHLEEDVYMQQPQGFI 224
              G D+ +TFSPV+KPVTIR+ILTLA+TYKW+I+Q+D+NNAFL+G L+E+VYM QP GF 
Sbjct: 1071 TPGFDFTETFSPVIKPVTIRLILTLAVTYKWSIQQIDINNAFLNGLLQEEVYMSQPTGFE 1130

Query: 223  QGDSSLVCHLKKAIYGLKQAPRAWYGSLTKTLCSFGFQQSKCDPSLLIYNNRGCQLMVLI 44
              D SLVC L K++YGLKQAPRAWY  LT+ L   GF +SKCDPSLLI++  G    +LI
Sbjct: 1131 ASDQSLVCKLHKSLYGLKQAPRAWYDRLTQELLQMGFVKSKCDPSLLIHHQHGACTYILI 1190

Query: 43   YVDDILITGSS 11
            YVDDILITGS+
Sbjct: 1191 YVDDILITGSA 1201


>gb|PNX94499.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 1434

 Score =  459 bits (1182), Expect = e-145
 Identities = 247/499 (49%), Positives = 311/499 (62%), Gaps = 11/499 (2%)
 Frame = -3

Query: 1474 QTDWGGEFRPFRKFLTDLGIIHRVICPQTHHQNGVVERKHRHIVETGLSLLSHSSLPYFY 1295
            Q+DWGGEFRPF   L  LGI HR+ CP T HQNG VERKHR IVE GL+LLS + LP  +
Sbjct: 706  QSDWGGEFRPFTSLLNTLGIQHRLTCPHTSHQNGTVERKHRQIVEMGLTLLSQAHLPLKF 765

Query: 1294 WDHAFHTAVYLINRLP--AAHSHKIPLQTLLHKYPDFKFLKSFGCACYPLLTPYNNPKFQ 1121
            WDH+F  AVYLIN+LP  A  S K P   L    PD+  +K FGC C+P L PYN  K Q
Sbjct: 766  WDHSFTQAVYLINKLPTSALSSFKSPHHALFKSQPDYSQVKVFGCLCFPHLRPYNKHKLQ 825

Query: 1120 FRSSECTFLGYSSSHLGYKCLDRKTGRIYISKDVIFNENHFPFQYKVTDANPNTCQSPTV 941
            FRSS C +LG S  H G+KCLD + GR+Y+SKDVIF+E+ FP+    T   PN+  S   
Sbjct: 826  FRSSPCVYLGVSPQHKGHKCLD-EHGRVYVSKDVIFHESQFPY----TSMFPNS--STNC 878

Query: 940  TQYKTALNVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTATPLHTPLPSDAX 761
            + ++T+ ++L                                    T T +++ L S   
Sbjct: 879  SNFETSSDML------------TLTTNSPTNSIHPPFTISQHHSPLTVTQINS-LISQPI 925

Query: 760  XXXXXXXXXXXXXXXXXPQNNHPMQTRSKTGHLKPPLY---------PSLHLTTTDPTTV 608
                                N P    SK  H K P+          P   +   +PT+V
Sbjct: 926  TSSQSNSHYNNTPSAENQPANPPTSPTSK--HNKHPMVTRGKTGSLKPKAFIAKLEPTSV 983

Query: 607  QQALTSPHWAQAMQQEFDALTANHTWNLVPLPAGKRAIGSKWIFRIKQNADGSINRYKAR 428
            + AL+ P+W+QAMQ E+ AL  N+TW+LVPLP  ++AIG KWIFRIK+N DG++N+YKAR
Sbjct: 984  KHALSDPNWSQAMQSEYKALMDNNTWSLVPLPPHRKAIGCKWIFRIKENPDGTVNKYKAR 1043

Query: 427  LVAKGYLQKHGQDYNDTFSPVVKPVTIRIILTLALTYKWAIRQLDVNNAFLHGHLEEDVY 248
            LVAKG+LQ  G D+ +TFSPV+KPVTIRIILTLA+TYKW ++Q+DVNNAFL+G L+E+VY
Sbjct: 1044 LVAKGFLQTPGFDFTETFSPVIKPVTIRIILTLAVTYKWTVQQIDVNNAFLNGVLQEEVY 1103

Query: 247  MQQPQGFIQGDSSLVCHLKKAIYGLKQAPRAWYGSLTKTLCSFGFQQSKCDPSLLIYNNR 68
            M QP GF   D SLVC L K++YGLKQAPRAWY  LT+ L   GF  SKCDPSLL+++ +
Sbjct: 1104 MTQPVGFEASDRSLVCKLHKSLYGLKQAPRAWYERLTQALLQLGFVASKCDPSLLVHHQQ 1163

Query: 67   GCQLMVLIYVDDILITGSS 11
            G    VLIYVDDILITGS+
Sbjct: 1164 GACTYVLIYVDDILITGSA 1182


>gb|PNX89511.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 430

 Score =  397 bits (1020), Expect = e-131
 Identities = 214/435 (49%), Positives = 268/435 (61%), Gaps = 2/435 (0%)
 Frame = -3

Query: 1336 GLSLLSHSSLPYFYWDHAFHTAVYLINRLP-AAHSH-KIPLQTLLHKYPDFKFLKSFGCA 1163
            GL+LLS +SLP  +WDH+F  AVYLIN+LP +A +H K P   L    PD+  LK FGC 
Sbjct: 2    GLTLLSQASLPLKFWDHSFTQAVYLINKLPTSAFNHFKSPHHALFKTQPDYSQLKVFGCL 61

Query: 1162 CYPLLTPYNNPKFQFRSSECTFLGYSSSHLGYKCLDRKTGRIYISKDVIFNENHFPFQYK 983
            C+P L PYN  K Q+RSS C +LG S  H G+KCLD + GRIYISKDVIF+E+ FP+   
Sbjct: 62   CFPHLRPYNKHKLQYRSSPCVYLGVSPQHKGHKCLDEQ-GRIYISKDVIFHESQFPYISM 120

Query: 982  VTDANPNTCQSPTVTQYKTALNVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN 803
              ++  N   S T   +    + +                                   +
Sbjct: 121  FPNSTTNPDNSVTPLTHSILSHHMPQNGHSLSITNTNSNSESNSLTSPKQAPGDKDISNH 180

Query: 802  TATPLHTPLPSDAXXXXXXXXXXXXXXXXXXPQNNHPMQTRSKTGHLKPPLYPSLHLTTT 623
                L T  PS+                     N+HPM TR KTG+LKP  +     T  
Sbjct: 181  HQL-LKTNSPSNPPTSTTNKAQNLSPITTTSHHNDHPMITRGKTGNLKPKAFT----TVL 235

Query: 622  DPTTVQQALTSPHWAQAMQQEFDALTANHTWNLVPLPAGKRAIGSKWIFRIKQNADGSIN 443
            +PTTV+ AL  P W QAM  EF ALT N+TW+LVPLP  K+AIG KWIFRIK+N DG+IN
Sbjct: 236  EPTTVKSALADPKWLQAMHTEFKALTDNNTWSLVPLPPHKKAIGCKWIFRIKENPDGTIN 295

Query: 442  RYKARLVAKGYLQKHGQDYNDTFSPVVKPVTIRIILTLALTYKWAIRQLDVNNAFLHGHL 263
            +YKARLVAKG+LQ  G D+ +TFSPV+KPVTIRIILTLA+T+KW ++Q+D+NNAFL+G L
Sbjct: 296  KYKARLVAKGFLQTPGFDFTETFSPVIKPVTIRIILTLAVTHKWVVQQIDINNAFLNGIL 355

Query: 262  EEDVYMQQPQGFIQGDSSLVCHLKKAIYGLKQAPRAWYGSLTKTLCSFGFQQSKCDPSLL 83
             E+VYM+QP GF   D SLVC L K++YGLKQAPRAWY  LT+TL   GF  SKCDPSL+
Sbjct: 356  HEEVYMKQPAGFESSDKSLVCKLHKSLYGLKQAPRAWYERLTQTLLQMGFIASKCDPSLM 415

Query: 82   IYNNRGCQLMVLIYV 38
            I + +G    VLIY+
Sbjct: 416  ILHQQGTTTYVLIYM 430


>dbj|GAU35295.1| hypothetical protein TSUD_54540 [Trifolium subterraneum]
          Length = 1046

 Score =  355 bits (912), Expect = e-108
 Identities = 212/473 (44%), Positives = 269/473 (56%), Gaps = 7/473 (1%)
 Frame = -3

Query: 1408 RVICPQTHHQNGVVERKHRHIVETGLSLLSHSSLPYFYWDHAFHTAVYLINRLP--AAHS 1235
            R+ CP T HQNG VERKHR IVE GL+LLS +S+P  +WDH F  AVYLIN+LP  A  S
Sbjct: 358  RLTCPHTSHQNGTVERKHRQIVEMGLTLLSQASMPLKFWDHNFTQAVYLINKLPSSALPS 417

Query: 1234 HKIPLQTLLHKYPDFKFLKSFGCACYPLLTPYNNPKFQFRSSECTFLGYSSSHLGYKCLD 1055
             K P   L + +             YPL T   N       S    + +  S+  Y    
Sbjct: 418  FKSPHHLLFNVFDPVPA----SILGYPLNTRDTNALMLVVKSVSKDVIFHESNFPY---- 469

Query: 1054 RKTGRIYISKDVIFNENHFPFQYKVTDANP----NTCQSP-TVTQYKTALNVLXXXXXXX 890
              T       D     N+FP     TD+ P    N  +SP T+TQ  + L +        
Sbjct: 470  --TNLFPTISDTHGTHNNFP-----TDSPPPYNLNKDKSPITLTQQTSPLTI-------- 514

Query: 889  XXXXXXXXXXXXXXXXXXXXXXXXXXXXNTATPLHTPLPSDAXXXXXXXXXXXXXXXXXX 710
                                        NT +PL  P                       
Sbjct: 515  ---------QQINSLISQPITSSQTTQTNTTSPLIRPTSPSPPSISH------------- 552

Query: 709  PQNNHPMQTRSKTGHLKPPLYPSLHLTTTDPTTVQQALTSPHWAQAMQQEFDALTANHTW 530
             QN+H M TR KTG+LKP  + +    + +PTTV+ AL  P W QAM+ E+ AL  NHTW
Sbjct: 553  -QNDHAMITRGKTGNLKPKTFTA----SIEPTTVKSALVDPKWLQAMKTEYKALVDNHTW 607

Query: 529  NLVPLPAGKRAIGSKWIFRIKQNADGSINRYKARLVAKGYLQKHGQDYNDTFSPVVKPVT 350
            +LVPLP  ++AIG KWIFR+K+N DGSIN+YKARLVAKG+LQ  G D+N+TFSPV+KPVT
Sbjct: 608  SLVPLPPHRKAIGCKWIFRVKENPDGSINKYKARLVAKGFLQTPGFDFNETFSPVIKPVT 667

Query: 349  IRIILTLALTYKWAIRQLDVNNAFLHGHLEEDVYMQQPQGFIQGDSSLVCHLKKAIYGLK 170
            IR+ILTLA+TYKW+++Q+D+NNAFL+  L+E+VYM QP  F   D SLVC L K++Y LK
Sbjct: 668  IRLILTLAVTYKWSVQQIDINNAFLNDLLQEEVYMTQPTCFEVSDKSLVCRLHKSLYSLK 727

Query: 169  QAPRAWYGSLTKTLCSFGFQQSKCDPSLLIYNNRGCQLMVLIYVDDILITGSS 11
            QAPRAWY  LT+TL   GF +SKCDPSLL+++ +G    VL+YVDDILITGS+
Sbjct: 728  QAPRAWYDRLTQTLMQMGFVKSKCDPSLLVHHQQGACTYVLVYVDDILITGST 780


>gb|PKU81996.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dendrobium catenatum]
          Length = 1188

 Score =  353 bits (906), Expect = e-107
 Identities = 208/506 (41%), Positives = 276/506 (54%), Gaps = 18/506 (3%)
 Frame = -3

Query: 1474 QTDWGGEF--RPFRKFLTDLGIIHRVICPQTHHQNGVVERKHRHIVETGLSLLSHSSLPY 1301
            +TD GGE+    F   L   G  H++ CP T  QNGV ERKHRH++ET  +LL  +S+  
Sbjct: 407  RTDGGGEYLNTAFTILLQQAGRSHQISCPYTPEQNGVAERKHRHLLETTRALLYTASISN 466

Query: 1300 FYWDHAFHTAVYLINRLPAAHS-HKIPLQTLLHKYPDFKFLKSFGCACYPLLTPYNNPKF 1124
             YW  A  TA YL+NR+P+ ++ +K P + L  + P +  L++FGCAC+PL       KF
Sbjct: 467  SYWPDAILTANYLVNRMPSPNTDNKSPYELLFQQKPSYDHLRTFGCACFPLTPSQLRNKF 526

Query: 1123 QFRSSECTFLGYSSSHLGYKCLDRKTGRIYISKDVIFNENHFPFQ-------YKVTDANP 965
            Q +S  C FLGYS  + GYKCLD    +I +S+ VIF+EN FPF         + +D  P
Sbjct: 527  QPKSKLCVFLGYSEKYKGYKCLDISNNKILLSRHVIFDENSFPFLATQQGSIQEPSDTLP 586

Query: 964  NTCQSPT-VTQYKTALNVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTATPL 788
                +PT V Q + A N+                                       TP+
Sbjct: 587  FQFLTPTSVVQKQNASNITHPEGLRLQP-----------------------------TPM 617

Query: 787  HTPLPSDAXXXXXXXXXXXXXXXXXXPQNNHPMQTRSKTGHLKPPLYPSL-HLTTTD--- 620
             T LP                        NH M TRSKTG LKP    +L H ++++   
Sbjct: 618  QTTLPMPTSTEDVSSRQLSVSAPSHIKSTNHQMITRSKTGSLKPVTRLNLLHDSSSNSIP 677

Query: 619  --PTTVQQALTSPHWAQAMQQEFDALTANHTWNLVPLPAGKRAIGSKWIFRIKQNADGSI 446
              P++  +A     W +AM  EF AL    TW+LVP P+    +G KW +R K +ADGS+
Sbjct: 678  ITPSSYTEASKHAEWRKAMADEFLALQIQGTWSLVPRPSNSSILGCKWTYRTKFHADGSL 737

Query: 445  NRYKARLVAKGYLQKHGQDYNDTFSPVVKPVTIRIILTLALTYKWAIRQLDVNNAFLHGH 266
            +++KARLVA G  Q+ G DY +TFSPV K  TIRI+L +AL   W ++Q+DV+NAFLHG 
Sbjct: 738  DKHKARLVALGNHQEFGLDYTETFSPVAKLPTIRILLAIALQNNWPVKQMDVSNAFLHGS 797

Query: 265  LEEDVYMQQPQGFIQ-GDSSLVCHLKKAIYGLKQAPRAWYGSLTKTLCSFGFQQSKCDPS 89
            L E VYM QPQGF    +   VC L KAIYGLKQAPR WY + T  L S GF  SK DPS
Sbjct: 798  LSETVYMSQPQGFEDTTNPDYVCLLNKAIYGLKQAPRLWYNTFTSFLVSIGFTHSKSDPS 857

Query: 88   LLIYNNRGCQLMVLIYVDDILITGSS 11
            LL+ +     + +L+YVDDILITG++
Sbjct: 858  LLMLHKDKITVYLLVYVDDILITGNN 883


>gb|KYP62479.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 293

 Score =  314 bits (804), Expect = e-101
 Identities = 146/227 (64%), Positives = 183/227 (80%)
 Frame = -3

Query: 691 MQTRSKTGHLKPPLYPSLHLTTTDPTTVQQALTSPHWAQAMQQEFDALTANHTWNLVPLP 512
           MQTRSK+G ++P L+P+L LTTT+PT+++QAL+SP W  AM  E+DAL  N TW LVPLP
Sbjct: 1   MQTRSKSGIVRPKLHPTLLLTTTEPTSLKQALSSPSWKTAMSLEYDALIKNQTWTLVPLP 60

Query: 511 AGKRAIGSKWIFRIKQNADGSINRYKARLVAKGYLQKHGQDYNDTFSPVVKPVTIRIILT 332
           + +  +G KW++RIK+N DG+IN+YKARLVAKG+ QK G DY++TFSPV+KP+TIR+ILT
Sbjct: 61  SNRTVVGCKWVYRIKENQDGTINKYKARLVAKGFHQKFGCDYSETFSPVIKPITIRVILT 120

Query: 331 LALTYKWAIRQLDVNNAFLHGHLEEDVYMQQPQGFIQGDSSLVCHLKKAIYGLKQAPRAW 152
           L +TY W I+Q+D+NNAFL+G LEEDVYM QP GF   D +LVC L KAIYGLKQAPRAW
Sbjct: 121 LDVTYHWPIKQVDINNAFLNGFLEEDVYMMQPPGFEVSDKTLVCKLNKAIYGLKQAPRAW 180

Query: 151 YGSLTKTLCSFGFQQSKCDPSLLIYNNRGCQLMVLIYVDDILITGSS 11
           Y  LTKTL  FGF QS+CDPSLLIY      + +LIYVDDI++TG+S
Sbjct: 181 YDRLTKTLLGFGFVQSRCDPSLLIYKQSQVCIYMLIYVDDIIVTGNS 227


>gb|PNX95703.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 975

 Score =  333 bits (854), Expect = e-100
 Identities = 182/371 (49%), Positives = 232/371 (62%), Gaps = 3/371 (0%)
 Frame = -3

Query: 1114 SSECTFLGYSSSHLGYKCLDRKTGRIYISKDVIFNENHFPFQYKVTDANPNTCQSPTVTQ 935
            S EC FLGYSS+H GYKCL   +GRIY+SKDV+FNE+ FP+     + +     SP ++ 
Sbjct: 303  SHECIFLGYSSTHKGYKCLS-PSGRIYVSKDVLFNESKFPYTSMFCEHS-----SPLMSS 356

Query: 934  YKTALNVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTA--TPLHTPLPSDAX 761
             +     +                                    T   T  H P P  + 
Sbjct: 357  VRDVPTKILPIEPSSFPNHNITPISPDNPIPTTSTILPSSDTLPTTVETINHAPNPPPSL 416

Query: 760  XXXXXXXXXXXXXXXXXPQNN-HPMQTRSKTGHLKPPLYPSLHLTTTDPTTVQQALTSPH 584
                               +N H MQTRSK+G +  P +P++ LT ++P +V+QAL  P 
Sbjct: 417  TISNSFNNPPLHPNKTTVPSNCHNMQTRSKSG-IFLPKHPTVLLTHSEPKSVKQALQDPK 475

Query: 583  WAQAMQQEFDALTANHTWNLVPLPAGKRAIGSKWIFRIKQNADGSINRYKARLVAKGYLQ 404
            W  AMQ EFDAL  N+TW+LVPLPA ++AIG KWIFRIK+N DGSIN+YKARLVAKG+ Q
Sbjct: 476  WLTAMQSEFDALQQNNTWSLVPLPANRKAIGCKWIFRIKENPDGSINKYKARLVAKGFHQ 535

Query: 403  KHGQDYNDTFSPVVKPVTIRIILTLALTYKWAIRQLDVNNAFLHGHLEEDVYMQQPQGFI 224
              G D+ +TFS VVKP+TIR+ILTLA++YKW+++QLDVNNAFL+G LEE+VYM+QPQGF 
Sbjct: 536  LQGFDFTETFSLVVKPLTIRLILTLAISYKWSLQQLDVNNAFLNGVLEEEVYMEQPQGFE 595

Query: 223  QGDSSLVCHLKKAIYGLKQAPRAWYGSLTKTLCSFGFQQSKCDPSLLIYNNRGCQLMVLI 44
              + S+VC L KA+YGLKQAPR W+  LT TL  FGFQ SKCDPSL I N     + +L+
Sbjct: 596  NSNPSMVCKLNKALYGLKQAPRQWFDKLTTTLVRFGFQTSKCDPSLFILNKDNHIVYLLV 655

Query: 43   YVDDILITGSS 11
            YVDDI+ITGSS
Sbjct: 656  YVDDIIITGSS 666


>gb|KYP31309.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 274

 Score =  300 bits (769), Expect = 5e-96
 Identities = 142/227 (62%), Positives = 178/227 (78%)
 Frame = -3

Query: 691 MQTRSKTGHLKPPLYPSLHLTTTDPTTVQQALTSPHWAQAMQQEFDALTANHTWNLVPLP 512
           MQTRSK+G   P ++PSL L  ++P TV+QAL  P+W  AMQQE++AL  NHTW+LV LP
Sbjct: 1   MQTRSKSGFHNPRIHPSLFLAHSEPKTVKQALADPNWFSAMQQEYNALMLNHTWDLVSLP 60

Query: 511 AGKRAIGSKWIFRIKQNADGSINRYKARLVAKGYLQKHGQDYNDTFSPVVKPVTIRIILT 332
           + ++A+G KW+FR+K+NADGSI++ KARLVAKG+ Q HG D+++TFSPV+KP+TIRIILT
Sbjct: 61  SDRKAVGCKWVFRVKENADGSIDKLKARLVAKGFHQVHGFDFHETFSPVIKPITIRIILT 120

Query: 331 LALTYKWAIRQLDVNNAFLHGHLEEDVYMQQPQGFIQGDSSLVCHLKKAIYGLKQAPRAW 152
           LALT  W + QLDVNNAFL+G LEE +YM QP GF  GD SLVC L KA+YGLKQAPR W
Sbjct: 121 LALTNNWNLFQLDVNNAFLNGTLEETIYMVQPPGFEAGDKSLVCKLNKALYGLKQAPRQW 180

Query: 151 YGSLTKTLCSFGFQQSKCDPSLLIYNNRGCQLMVLIYVDDILITGSS 11
           +  L  TL  FGFQ SKCDPSL  Y ++   + +L+YVDDI+ITGSS
Sbjct: 181 FNKLKLTLTRFGFQASKCDPSLFQYQHQTHTIFILVYVDDIIITGSS 227


>gb|PNX66338.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 258

 Score =  300 bits (767), Expect = 6e-96
 Identities = 143/227 (62%), Positives = 179/227 (78%)
 Frame = -3

Query: 691 MQTRSKTGHLKPPLYPSLHLTTTDPTTVQQALTSPHWAQAMQQEFDALTANHTWNLVPLP 512
           M TR+KTG+LKP  +    L + +PT ++ AL  PHW +AMQ E+ AL  N+TW+LVPLP
Sbjct: 1   MVTRAKTGNLKPKTF----LASIEPTNIKNALADPHWLKAMQAEYKALQDNNTWSLVPLP 56

Query: 511 AGKRAIGSKWIFRIKQNADGSINRYKARLVAKGYLQKHGQDYNDTFSPVVKPVTIRIILT 332
             K+AIG KWIFR+K+N DGSIN+YKARLVAKG+ Q  G D+ +TFSPV+KPVTIRIILT
Sbjct: 57  PHKKAIGCKWIFRVKENPDGSINKYKARLVAKGFHQTPGFDFTETFSPVIKPVTIRIILT 116

Query: 331 LALTYKWAIRQLDVNNAFLHGHLEEDVYMQQPQGFIQGDSSLVCHLKKAIYGLKQAPRAW 152
           LA+TYKW+++Q+D+NNAFL+G L+E+VYM QP GF   D +LVC L KA+YGLKQAPRAW
Sbjct: 117 LAVTYKWSVQQIDINNAFLNGLLQEEVYMTQPTGFENSDKTLVCKLHKALYGLKQAPRAW 176

Query: 151 YGSLTKTLCSFGFQQSKCDPSLLIYNNRGCQLMVLIYVDDILITGSS 11
           Y  LT+TL   GF +SKCDPSLL+++  G    VLIYVDDILITGS+
Sbjct: 177 YERLTQTLLQMGFIKSKCDPSLLVHHQNGACTYVLIYVDDILITGSA 223


>gb|PNX77046.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 515

 Score =  308 bits (790), Expect = 7e-96
 Identities = 149/231 (64%), Positives = 181/231 (78%)
 Frame = -3

Query: 703 NNHPMQTRSKTGHLKPPLYPSLHLTTTDPTTVQQALTSPHWAQAMQQEFDALTANHTWNL 524
           N+H M TR+KTGHLKP  + ++     +PTTV+ AL  P W QAMQ EF ALT N+TW+L
Sbjct: 70  NDHSMITRAKTGHLKPKAFTTIF----EPTTVKSALADPQWLQAMQTEFKALTDNNTWSL 125

Query: 523 VPLPAGKRAIGSKWIFRIKQNADGSINRYKARLVAKGYLQKHGQDYNDTFSPVVKPVTIR 344
           VPLP  K+AIG KWIFRIK+N DG+IN+YKARLVAKG+LQ  G D+ +TFSPV+KPVTIR
Sbjct: 126 VPLPPHKKAIGCKWIFRIKENPDGTINKYKARLVAKGFLQTPGFDFTETFSPVIKPVTIR 185

Query: 343 IILTLALTYKWAIRQLDVNNAFLHGHLEEDVYMQQPQGFIQGDSSLVCHLKKAIYGLKQA 164
           IILTLA+TYKW ++Q+D+NNAFL+G L E+VYM QP GF   D SLVC L K++YGLKQA
Sbjct: 186 IILTLAVTYKWPVQQIDINNAFLNGILHEEVYMTQPTGFESSDKSLVCKLHKSLYGLKQA 245

Query: 163 PRAWYGSLTKTLCSFGFQQSKCDPSLLIYNNRGCQLMVLIYVDDILITGSS 11
           PRAWY  LT+TL   GF  SKCDPSL++ + +G    VLIYVDDILITGS+
Sbjct: 246 PRAWYERLTQTLLQMGFIASKCDPSLMVLHQQGACTYVLIYVDDILITGSA 296


>gb|PNY02741.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 1054

 Score =  320 bits (819), Expect = 4e-95
 Identities = 151/231 (65%), Positives = 186/231 (80%)
 Frame = -3

Query: 703  NNHPMQTRSKTGHLKPPLYPSLHLTTTDPTTVQQALTSPHWAQAMQQEFDALTANHTWNL 524
            N+HPM TR KTG+LKP ++    L  ++P+ V+QAL  P W  AM+ E+ AL  N TW+L
Sbjct: 626  NSHPMVTRGKTGNLKPKVF----LAHSEPSNVKQALADPQWLTAMKAEYSALMNNQTWSL 681

Query: 523  VPLPAGKRAIGSKWIFRIKQNADGSINRYKARLVAKGYLQKHGQDYNDTFSPVVKPVTIR 344
            VPLPA +RAIG KW+FRIK+N DGS+N+YKARLVAKGY Q+ G DYN+TFSPVVKPVTIR
Sbjct: 682  VPLPAHRRAIGCKWVFRIKENPDGSVNKYKARLVAKGYSQEQGFDYNETFSPVVKPVTIR 741

Query: 343  IILTLALTYKWAIRQLDVNNAFLHGHLEEDVYMQQPQGFIQGDSSLVCHLKKAIYGLKQA 164
            IILTLA+++KW I+Q+D+NNAFL+G L+E+VYM QP GFI  DSSLVC L +A+YGLKQA
Sbjct: 742  IILTLAISFKWDIQQIDINNAFLNGILQEEVYMTQPPGFISSDSSLVCRLHRALYGLKQA 801

Query: 163  PRAWYGSLTKTLCSFGFQQSKCDPSLLIYNNRGCQLMVLIYVDDILITGSS 11
            PRAWY  LT+ L  FGFQ SKCDPSL +Y ++G  L VL+YVDDIL+TGSS
Sbjct: 802  PRAWYERLTQALVRFGFQPSKCDPSLFVYTHKGITLYVLVYVDDILLTGSS 852



 Score =  204 bits (519), Expect = 2e-53
 Identities = 94/179 (52%), Positives = 125/179 (69%), Gaps = 2/179 (1%)
 Frame = -3

Query: 1474 QTDWGGEFRPFRKFLTDLGIIHRVICPQTHHQNGVVERKHRHIVETGLSLLSHSSLPYFY 1295
            Q+DWGGEFR     LT+LGI HR+ CP T HQNG VER+HR IVETGL+LL H+++P  +
Sbjct: 364  QSDWGGEFRSISTLLTNLGIQHRLTCPHTSHQNGTVERRHRSIVETGLTLLKHANMPLEF 423

Query: 1294 WDHAFHTAVYLINRLPAAH--SHKIPLQTLLHKYPDFKFLKSFGCACYPLLTPYNNPKFQ 1121
            WDH+F TAV ++N+LP A   ++  P   L H  PD+K ++ FGCAC+P L PYNN K +
Sbjct: 424  WDHSFTTAVSVLNKLPTASLPNYSSPFYALHHYEPDYKSIRVFGCACFPHLRPYNNHKLE 483

Query: 1120 FRSSECTFLGYSSSHLGYKCLDRKTGRIYISKDVIFNENHFPFQYKVTDANPNTCQSPT 944
            FRS++CT+LG S  H G+KC+    GR+YISKDV+FNE  FPF    + +   +  SP+
Sbjct: 484  FRSTKCTYLGPSPLHKGHKCMS-SDGRVYISKDVVFNETEFPFSSLNSSSGTTSVSSPS 541


>gb|PNX84939.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 499

 Score =  303 bits (777), Expect = 4e-94
 Identities = 148/231 (64%), Positives = 179/231 (77%)
 Frame = -3

Query: 703 NNHPMQTRSKTGHLKPPLYPSLHLTTTDPTTVQQALTSPHWAQAMQQEFDALTANHTWNL 524
           N H M TR+KTGHLK   + ++     +PTTV+ AL  P W QAMQ EF ALT N+TW+L
Sbjct: 54  NYHSMITRAKTGHLKLKAFTTIF----EPTTVKSALADPQWLQAMQTEFKALTDNNTWSL 109

Query: 523 VPLPAGKRAIGSKWIFRIKQNADGSINRYKARLVAKGYLQKHGQDYNDTFSPVVKPVTIR 344
           VPLP  K+AIG KWIFRIK+N DG+IN+YKARLVAKG+LQ  G D+ +TFSPV+KPVTIR
Sbjct: 110 VPLPPHKKAIGCKWIFRIKENPDGTINKYKARLVAKGFLQTPGFDFTETFSPVIKPVTIR 169

Query: 343 IILTLALTYKWAIRQLDVNNAFLHGHLEEDVYMQQPQGFIQGDSSLVCHLKKAIYGLKQA 164
           IILTLA+TYKW ++Q+D+NNAFL+G L E+VYM QP GF   D SLVC L K++YGLKQA
Sbjct: 170 IILTLAVTYKWPVQQIDINNAFLNGILHEEVYMTQPTGFESSDKSLVCKLHKSLYGLKQA 229

Query: 163 PRAWYGSLTKTLCSFGFQQSKCDPSLLIYNNRGCQLMVLIYVDDILITGSS 11
           PRAWY  LT+TL   GF  SKCDPSL++ + +G    VLIYVDDILITGS+
Sbjct: 230 PRAWYERLTQTLLQMGFIASKCDPSLMVLHQQGACTYVLIYVDDILITGSA 280


>gb|KYP70746.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 324

 Score =  295 bits (756), Expect = 2e-93
 Identities = 142/229 (62%), Positives = 178/229 (77%), Gaps = 2/229 (0%)
 Frame = -3

Query: 691 MQTRSKTGHLKPPLYPSLHLTTTDPTTVQQALTSPHWAQAMQQEFDALTANHTWNLVPLP 512
           MQTRSK+G   P ++PSL L  ++P TV+QAL  P+W  AMQQE++AL  NHTW+LV LP
Sbjct: 1   MQTRSKSGFHNPRIHPSLFLAHSEPKTVKQALADPNWFSAMQQEYNALMLNHTWDLVSLP 60

Query: 511 AGKRAIGSKWIFRIKQNADGSINRYKARLVAKGYLQKHGQDYNDTFSPVVKPVTIRIILT 332
           + ++A+G KW+FR+K+NADGSI++ KARLVAKG+ Q HG D+++TFSPV+KP+TIRIILT
Sbjct: 61  SDRKAVGCKWVFRVKENADGSIDKLKARLVAKGFHQVHGFDFHETFSPVIKPITIRIILT 120

Query: 331 LALTYKWAIRQLDVNNAFLHGHLEEDVYMQQPQGFIQGDSSLVCHLKKAIYGLKQA--PR 158
           LALT  W + QLDVNNAFL+G LEE +YM QP GF  GD SLVC L KA+YGLKQA  PR
Sbjct: 121 LALTNNWNLFQLDVNNAFLNGTLEETIYMVQPPGFEAGDKSLVCKLNKALYGLKQAPPPR 180

Query: 157 AWYGSLTKTLCSFGFQQSKCDPSLLIYNNRGCQLMVLIYVDDILITGSS 11
            W+  L  TL  FGFQ SKCDPSL  Y ++   + +L+YVDDI+ITGSS
Sbjct: 181 QWFNKLKLTLTRFGFQASKCDPSLFQYQHQTHTIFILVYVDDIIITGSS 229


>gb|PNX99662.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 1046

 Score =  313 bits (801), Expect = 1e-92
 Identities = 149/231 (64%), Positives = 182/231 (78%)
 Frame = -3

Query: 703  NNHPMQTRSKTGHLKPPLYPSLHLTTTDPTTVQQALTSPHWAQAMQQEFDALTANHTWNL 524
            N HPM TR KTG+LKP ++    L  ++P TV+QAL  P W  AM+ E+ AL  N TW+L
Sbjct: 511  NKHPMVTRGKTGNLKPKVF----LAHSEPGTVKQALADPQWLAAMKCEYSALMKNETWSL 566

Query: 523  VPLPAGKRAIGSKWIFRIKQNADGSINRYKARLVAKGYLQKHGQDYNDTFSPVVKPVTIR 344
            VPLPA +RAIG KW+FRIK+N DGS+N+YKARLVAKG+ Q+HG DY +TFSPVVKPVTIR
Sbjct: 567  VPLPAHRRAIGCKWVFRIKENPDGSVNKYKARLVAKGFSQEHGFDYTETFSPVVKPVTIR 626

Query: 343  IILTLALTYKWAIRQLDVNNAFLHGHLEEDVYMQQPQGFIQGDSSLVCHLKKAIYGLKQA 164
            IILTLA+++KW I+Q+DVNNAFL+G L E+VYM QP GF+  D +LVC L KA+YGLKQA
Sbjct: 627  IILTLAISFKWDIQQIDVNNAFLNGILHEEVYMVQPPGFVSTDKTLVCKLHKALYGLKQA 686

Query: 163  PRAWYGSLTKTLCSFGFQQSKCDPSLLIYNNRGCQLMVLIYVDDILITGSS 11
            PRAWY  LT+ L  FGF  SKCDPSL +YN++   L VL+YVDDIL+TGSS
Sbjct: 687  PRAWYERLTQALLHFGFHASKCDPSLFVYNHKDVTLYVLVYVDDILLTGSS 737



 Score =  199 bits (506), Expect = 1e-51
 Identities = 95/181 (52%), Positives = 123/181 (67%), Gaps = 4/181 (2%)
 Frame = -3

Query: 1474 QTDWGGEFRPFRKFLTDLGIIHRVICPQTHHQNGVVERKHRHIVETGLSLLSHSSLPYFY 1295
            Q+D GGEFRP    LT LG+ HR  CP T HQNG VER+HR IVETGL+LL+H+++P  +
Sbjct: 247  QSDGGGEFRPISTLLTQLGVKHRFTCPHTSHQNGTVERRHRSIVETGLTLLAHANMPLTF 306

Query: 1294 WDHAFHTAVYLINRLPAAHSHKI--PLQTLLHKYPDFKFLKSFGCACYPLLTPYNNPKFQ 1121
            WDH+F TAV+L+N LP A       P Q L ++ PD+K L+ FGC+C+P L PYNN K +
Sbjct: 307  WDHSFTTAVHLLNYLPTASLRNFISPYQALYNQIPDYKSLRVFGCSCFPHLRPYNNHKLE 366

Query: 1120 FRSSECTFLGYSSSHLGYKCLDRKTGRIYISKDVIFNENHFPFQYKVTDA--NPNTCQSP 947
             RS++C +LG S  H GYKC+    GR+YISKDV+FNE+ FPF      A  + +T   P
Sbjct: 367  LRSTKCVYLGPSPQHKGYKCM-TANGRVYISKDVVFNESEFPFSLLCASAPGSSSTTFGP 425

Query: 946  T 944
            T
Sbjct: 426  T 426


>gb|KYP46114.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 539

 Score =  300 bits (769), Expect = 2e-92
 Identities = 142/227 (62%), Positives = 178/227 (78%)
 Frame = -3

Query: 691 MQTRSKTGHLKPPLYPSLHLTTTDPTTVQQALTSPHWAQAMQQEFDALTANHTWNLVPLP 512
           MQTRSK+G   P ++PSL L  ++P TV+QAL  P+W  AMQQE++AL  NHTW+LV LP
Sbjct: 1   MQTRSKSGFHNPRIHPSLFLAHSEPKTVKQALADPNWFSAMQQEYNALMLNHTWDLVSLP 60

Query: 511 AGKRAIGSKWIFRIKQNADGSINRYKARLVAKGYLQKHGQDYNDTFSPVVKPVTIRIILT 332
           + ++A+G KW+FR+K+NADGSI++ KARLVAKG+ Q HG D+++TFSPV+KP+TIRIILT
Sbjct: 61  SDRKAVGCKWVFRVKENADGSIDKLKARLVAKGFHQVHGFDFHETFSPVIKPITIRIILT 120

Query: 331 LALTYKWAIRQLDVNNAFLHGHLEEDVYMQQPQGFIQGDSSLVCHLKKAIYGLKQAPRAW 152
           LALT  W + QLDVNNAFL+G LEE +YM QP GF  GD SLVC L KA+YGLKQAPR W
Sbjct: 121 LALTNNWNLFQLDVNNAFLNGTLEETIYMVQPPGFEAGDKSLVCKLNKALYGLKQAPRQW 180

Query: 151 YGSLTKTLCSFGFQQSKCDPSLLIYNNRGCQLMVLIYVDDILITGSS 11
           +  L  TL  FGFQ SKCDPSL  Y ++   + +L+YVDDI+ITGSS
Sbjct: 181 FNKLKLTLTRFGFQASKCDPSLFQYQHQTHTIFILVYVDDIIITGSS 227


>gb|PNX93258.1| histone deacetylase, partial [Trifolium pratense]
          Length = 1438

 Score =  315 bits (807), Expect = 8e-92
 Identities = 150/231 (64%), Positives = 185/231 (80%)
 Frame = -3

Query: 703  NNHPMQTRSKTGHLKPPLYPSLHLTTTDPTTVQQALTSPHWAQAMQQEFDALTANHTWNL 524
            N+H M TR KTG+LKP  +    +TT +PTTV+ AL++P W QAMQ E  ALT N+TW+L
Sbjct: 910  NDHSMVTRGKTGNLKPKTF----ITTLEPTTVKSALSNPRWLQAMQSELKALTDNNTWSL 965

Query: 523  VPLPAGKRAIGSKWIFRIKQNADGSINRYKARLVAKGYLQKHGQDYNDTFSPVVKPVTIR 344
            VPLP  KRAIG KW+FR+K+N DG+IN+YKARLVAKG+LQ  G D+ +TFSPVVKPVT+R
Sbjct: 966  VPLPPHKRAIGCKWVFRVKENPDGTINKYKARLVAKGFLQTPGFDFTETFSPVVKPVTVR 1025

Query: 343  IILTLALTYKWAIRQLDVNNAFLHGHLEEDVYMQQPQGFIQGDSSLVCHLKKAIYGLKQA 164
            IILTLA+TYKW+++Q+D+NNAFL+G L+E+VYM QP GF   D SLVC L K++YGLKQA
Sbjct: 1026 IILTLAVTYKWSVKQIDINNAFLNGLLQEEVYMTQPTGFESSDKSLVCKLHKSLYGLKQA 1085

Query: 163  PRAWYGSLTKTLCSFGFQQSKCDPSLLIYNNRGCQLMVLIYVDDILITGSS 11
            PRAWY  LT+TL   GF  SKCDPSLL+++ +G    VLIYVDDILITGSS
Sbjct: 1086 PRAWYERLTQTLVQMGFSASKCDPSLLVHHQQGACTYVLIYVDDILITGSS 1136



 Score =  197 bits (502), Expect = 5e-51
 Identities = 93/163 (57%), Positives = 116/163 (71%), Gaps = 2/163 (1%)
 Frame = -3

Query: 1474 QTDWGGEFRPFRKFLTDLGIIHRVICPQTHHQNGVVERKHRHIVETGLSLLSHSSLPYFY 1295
            Q+DWGGEFR F   L DLGI HR+ CP T HQNG VERKHR IVE GL+LLS +SLP  +
Sbjct: 666  QSDWGGEFRSFTTLLNDLGIQHRLTCPHTSHQNGTVERKHRQIVEMGLTLLSQASLPLEF 725

Query: 1294 WDHAFHTAVYLINRLP--AAHSHKIPLQTLLHKYPDFKFLKSFGCACYPLLTPYNNPKFQ 1121
            WDH+F  AVYLIN+LP  A  ++  P + L    PD+  +K FGC C+P + PYN  K Q
Sbjct: 726  WDHSFTQAVYLINKLPTSALPTYISPHKALFKSQPDYSQIKVFGCLCFPHMRPYNKHKLQ 785

Query: 1120 FRSSECTFLGYSSSHLGYKCLDRKTGRIYISKDVIFNENHFPF 992
            FRSS C +LG S  H G+KCLD + G+IY+SKDV+F+E+ FP+
Sbjct: 786  FRSSPCVYLGVSPQHKGHKCLD-EHGKIYVSKDVVFHESQFPY 827