BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus22_contig00016667
         (991 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|GAU50521.1| hypothetical protein TSUD_177710 [Trifolium subt...   172   3e-64
gb|PNX59861.1| retrovirus-related Pol polyprotein from transposo...   182   1e-53
gb|PNX68054.1| hypothetical protein L195_g055961, partial [Trifo...   184   4e-53
gb|PNX89974.1| copia-type polyprotein, partial [Trifolium pratense]   184   4e-51
gb|PNX67516.1| copia-type polyprotein, partial [Trifolium pratense]   178   1e-50
gb|PNX69701.1| copia-type polyprotein, partial [Trifolium pratense]   176   3e-50
gb|PNX81877.1| hypothetical protein L195_g037902, partial [Trifo...   184   1e-49
gb|PNX88393.1| retrovirus-related Pol polyprotein from transposo...   172   2e-48
gb|PNX99755.1| copia-type polyprotein, partial [Trifolium pratense]   181   2e-47
gb|PNX66111.1| copia-type polyprotein, partial [Trifolium pratense]   169   4e-47
dbj|GAU16533.1| hypothetical protein TSUD_167640 [Trifolium subt...   179   1e-46
dbj|GAU16044.1| hypothetical protein TSUD_339150 [Trifolium subt...   179   2e-46
gb|PNX70305.1| copia-type polyprotein, partial [Trifolium pratense]   166   2e-46
gb|PNX77239.1| copia-type polyprotein, partial [Trifolium pratense]   177   2e-46
gb|PNX58644.1| copia-type polyprotein [Trifolium pratense]            167   4e-46
gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinen...   177   7e-46
ref|XP_014623252.1| PREDICTED: uncharacterized mitochondrial pro...   162   7e-46
gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinen...   177   8e-46
gb|PRQ38020.1| putative RNA-directed DNA polymerase [Rosa chinen...   174   9e-46
gb|PNX70402.1| copia-type polyprotein, partial [Trifolium pratense]   163   1e-45

>dbj|GAU50521.1| hypothetical protein TSUD_177710 [Trifolium subterraneum]
          Length = 911

 Score =  172 bits (435), Expect(2) = 3e-64
 Identities = 89/152 (58%), Positives = 110/152 (72%), Gaps = 6/152 (3%)
 Frame = -2

Query: 438 IQGKKRVDENK---RTRRPPVWWNDYDTGNRALFEEM--SLAVFSTA-DPTTFEEAVQSS 277
           +Q     D+N+   R R+ P    D+  G  A  E+   SLAV+S   DPT++EEA +S 
Sbjct: 485 VQNLSSDDDNELGPRIRKTPGHLRDFVIGREAEEEQELHSLAVYSVGEDPTSYEEASKSH 544

Query: 276 VWQQAMDSEIQAIERNNTWKLVDLPVNTCSIGVKWVYKTKLNEEGKVEKHKARLVAKGYA 97
            W+QAMD EI+AIE NNTW+L+DLP    +IGVKWVYKTK NE GK++K KARLV KGY+
Sbjct: 545 KWKQAMDVEIEAIEANNTWELIDLPKGAKAIGVKWVYKTKYNEMGKIDKFKARLVVKGYS 604

Query: 96  QKYGIDYNEVFAPVARWDTIRAILAVAALRGW 1
           QKYGIDYNEVFAPVARW+TIR +LA AA +GW
Sbjct: 605 QKYGIDYNEVFAPVARWETIRTVLAFAASKGW 636



 Score =  103 bits (256), Expect(2) = 3e-64
 Identities = 52/125 (41%), Positives = 72/125 (57%), Gaps = 5/125 (4%)
 Frame = -1

Query: 886 DISHLWHCRFGHLSQKGLKILVQKNMVEGFPTLTESSKICDDCQIGKQHRESFPMESTWR 707
           D + LWH R+GHLS  GLK+L  K+MV+G P +      C DC  GKQ R++ P ++ WR
Sbjct: 368 DKTQLWHNRYGHLSINGLKLLHNKDMVKGLPAIGNMEDKCTDCLTGKQQRQAIPKQANWR 427

Query: 706 VTKVLELIHSDICGPITPASKSNKR--DKNTSKGKEVID---CDDGEVDAPEEEQETAIT 542
            T   +LIHSDICGPI P S   K   D  TS  +  I+    D+G  DA ++E +    
Sbjct: 428 ATTKFQLIHSDICGPINPCSNGGKSTVDAPTSAVEVPIENNVTDNGSTDAEDQEHQVVQN 487

Query: 541 PSNEE 527
            S+++
Sbjct: 488 LSSDD 492


>gb|PNX59861.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 155

 Score =  182 bits (462), Expect = 1e-53
 Identities = 93/138 (67%), Positives = 106/138 (76%), Gaps = 3/138 (2%)
 Frame = -2

Query: 408 KRTRRPPVWWNDYDTGNRALFEEM--SLAVFST-ADPTTFEEAVQSSVWQQAMDSEIQAI 238
           +R RRPP W  DY TG+    EE   +LAVFS   DPT FEEAV+  VW++AMD EI +I
Sbjct: 18  QRARRPPGWMRDYVTGSELQKEEQLQNLAVFSNNEDPTCFEEAVKLXVWREAMDQEIXSI 77

Query: 237 ERNNTWKLVDLPVNTCSIGVKWVYKTKLNEEGKVEKHKARLVAKGYAQKYGIDYNEVFAP 58
           ERN TW+L DLP     IGVKWVYKTK NE+GKVEK+KARLVAKGY+Q+YGID NEVFAP
Sbjct: 78  ERNRTWELTDLPQGMKKIGVKWVYKTKYNEQGKVEKYKARLVAKGYSQQYGIDLNEVFAP 137

Query: 57  VARWDTIRAILAVAALRG 4
           VARWDTIR ILA+AA  G
Sbjct: 138 VARWDTIRTILALAASHG 155


>gb|PNX68054.1| hypothetical protein L195_g055961, partial [Trifolium pratense]
          Length = 248

 Score =  184 bits (467), Expect = 4e-53
 Identities = 89/142 (62%), Positives = 105/142 (73%), Gaps = 7/142 (4%)
 Frame = -2

Query: 405 RTRRPPVWWNDYDT-------GNRALFEEMSLAVFSTADPTTFEEAVQSSVWQQAMDSEI 247
           R RRPP W  DYDT       G       M++    + DP T+EEAV+SS W+ AMD EI
Sbjct: 42  RNRRPPPWHADYDTTMTEEETGEEDSMNLMTVTPCLSNDPATYEEAVKSSTWKAAMDKEI 101

Query: 246 QAIERNNTWKLVDLPVNTCSIGVKWVYKTKLNEEGKVEKHKARLVAKGYAQKYGIDYNEV 67
           +AIERN TWKL DLP +   IGVKW+YKTKLNE G++EK+KARLVAKGYAQ+YG DY EV
Sbjct: 102 EAIERNGTWKLTDLPRSAKVIGVKWIYKTKLNERGEIEKYKARLVAKGYAQRYGTDYKEV 161

Query: 66  FAPVARWDTIRAILAVAALRGW 1
           FAPVARWDTIR++LA+AA RGW
Sbjct: 162 FAPVARWDTIRSLLAIAASRGW 183


>gb|PNX89974.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 415

 Score =  184 bits (466), Expect = 4e-51
 Identities = 85/137 (62%), Positives = 111/137 (81%), Gaps = 2/137 (1%)
 Frame = -2

Query: 405 RTRRPPVWWNDYDTGNRALFEEM-SLAVFSTA-DPTTFEEAVQSSVWQQAMDSEIQAIER 232
           R RRPP W  DY +G     EE+ +L +F+ A DPTTFEEAV+S  W+ AM++E++AIE+
Sbjct: 226 RVRRPPGWMQDYTSGEEFSEEEIQNLVMFTVASDPTTFEEAVKSEKWRNAMNNEMEAIEK 285

Query: 231 NNTWKLVDLPVNTCSIGVKWVYKTKLNEEGKVEKHKARLVAKGYAQKYGIDYNEVFAPVA 52
           NNTW+L DLP    +IG+KW++KTKLNE G+VEK+KARLVAKGY+Q+YG+DY EVFAPVA
Sbjct: 286 NNTWELTDLPTGAKTIGLKWIFKTKLNENGEVEKYKARLVAKGYSQQYGVDYTEVFAPVA 345

Query: 51  RWDTIRAILAVAALRGW 1
           RWDTIR ++A+AA +GW
Sbjct: 346 RWDTIRMVIALAAQKGW 362


>gb|PNX67516.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 254

 Score =  178 bits (451), Expect = 1e-50
 Identities = 85/141 (60%), Positives = 109/141 (77%), Gaps = 6/141 (4%)
 Frame = -2

Query: 405 RTRRPPVWWNDYDTGNRAL-----FEEMSLAVFSTA-DPTTFEEAVQSSVWQQAMDSEIQ 244
           R RRPP +  DY TGN         + +++A+F T+ DP T+EEAV+S VW+ AM++EI+
Sbjct: 77  RPRRPPGYLRDYVTGNELXDDDDQLQNLAIAMFGTSEDPATYEEAVKSKVWRDAMEAEIK 136

Query: 243 AIERNNTWKLVDLPVNTCSIGVKWVYKTKLNEEGKVEKHKARLVAKGYAQKYGIDYNEVF 64
           +IE N+TW+L  LP    +IGVKW+YKTKLNE+GK+EKHKARLVAKGY+QK+GIDY EVF
Sbjct: 137 SIEANDTWELTKLPKEAKAIGVKWIYKTKLNEKGKIEKHKARLVAKGYSQKHGIDYGEVF 196

Query: 63  APVARWDTIRAILAVAALRGW 1
           APVARWDTIR IL++AA   W
Sbjct: 197 APVARWDTIRTILSLAAFEKW 217


>gb|PNX69701.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 231

 Score =  176 bits (446), Expect = 3e-50
 Identities = 87/130 (66%), Positives = 103/130 (79%), Gaps = 3/130 (2%)
 Frame = -2

Query: 408 KRTRRPPVWWNDYDTGNRALFEEM--SLAVFST-ADPTTFEEAVQSSVWQQAMDSEIQAI 238
           +R RRPP W  DY TG+    EE   +LAVFS   DPT FEEAV+ +VW++AMD EI++I
Sbjct: 102 QRARRPPGWMRDYVTGSELQEEEQLQNLAVFSNNEDPTCFEEAVKLAVWREAMDQEIESI 161

Query: 237 ERNNTWKLVDLPVNTCSIGVKWVYKTKLNEEGKVEKHKARLVAKGYAQKYGIDYNEVFAP 58
           ERN TW+L DLP     IGVKWV+KTK NE+GKVEK+KARLVAKGY+Q+YGID+NEVFAP
Sbjct: 162 ERNGTWELTDLPQGMKKIGVKWVFKTKYNEQGKVEKYKARLVAKGYSQQYGIDFNEVFAP 221

Query: 57  VARWDTIRAI 28
           VARWDTIR I
Sbjct: 222 VARWDTIRTI 231


>gb|PNX81877.1| hypothetical protein L195_g037902, partial [Trifolium pratense]
          Length = 575

 Score =  184 bits (466), Expect = 1e-49
 Identities = 85/137 (62%), Positives = 111/137 (81%), Gaps = 2/137 (1%)
 Frame = -2

Query: 405 RTRRPPVWWNDYDTGNRALFEEM-SLAVFSTA-DPTTFEEAVQSSVWQQAMDSEIQAIER 232
           R RRPP W  DY +G     EE+ +L +F+ A DPTTFEEAV+S  W+ AM++E++AIE+
Sbjct: 42  RVRRPPGWMQDYTSGEEFSEEEIQNLVMFTVASDPTTFEEAVKSEKWRNAMNNEMEAIEK 101

Query: 231 NNTWKLVDLPVNTCSIGVKWVYKTKLNEEGKVEKHKARLVAKGYAQKYGIDYNEVFAPVA 52
           NNTW+L DLP    +IG+KW++KTKLNE G+VEK+KARLVAKGY+Q+YG+DY EVFAPVA
Sbjct: 102 NNTWELTDLPTGAKTIGLKWIFKTKLNENGEVEKYKARLVAKGYSQQYGVDYTEVFAPVA 161

Query: 51  RWDTIRAILAVAALRGW 1
           RWDTIR ++A+AA +GW
Sbjct: 162 RWDTIRMVIALAAQKGW 178


>gb|PNX88393.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 273

 Score =  172 bits (437), Expect = 2e-48
 Identities = 90/163 (55%), Positives = 113/163 (69%), Gaps = 3/163 (1%)
 Frame = -2

Query: 480 AASTNNTVTPVRFKIQGKKRVDE-NKRTRRPPVWWNDYDTGNRALFEEM-SLAVFSTA-D 310
           A S    +T    + +G   V+E  KR  + P + NDY+T +    E   S A FS + D
Sbjct: 64  ALSEEMDLTVSDLEEEGDNEVNELGKRVSKKPGYLNDYETRDYETGESNDSQAFFSPSED 123

Query: 309 PTTFEEAVQSSVWQQAMDSEIQAIERNNTWKLVDLPVNTCSIGVKWVYKTKLNEEGKVEK 130
           P T+ +A +  VW++AMD+EI+AIE N+TW+L  LP     IGVKWVYKTK NEEGK+EK
Sbjct: 124 PITYNDAAKHEVWKKAMDTEIEAIESNDTWELTHLPTGAKKIGVKWVYKTKYNEEGKIEK 183

Query: 129 HKARLVAKGYAQKYGIDYNEVFAPVARWDTIRAILAVAALRGW 1
           HKARLVAKGY+Q++GIDYNEVFAPVARWDTIR ILA+AA   W
Sbjct: 184 HKARLVAKGYSQQHGIDYNEVFAPVARWDTIRTILAIAATNNW 226


>gb|PNX99755.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 1209

 Score =  181 bits (460), Expect = 2e-47
 Identities = 88/136 (64%), Positives = 106/136 (77%), Gaps = 1/136 (0%)
 Frame = -2

Query: 405  RTRRPPVWWNDYDTGNRALFEEMSLAVF-STADPTTFEEAVQSSVWQQAMDSEIQAIERN 229
            RTR+PP W  DY T   +  E  +LA F +  DP +++EAV+   W+QAMD EI++IE+N
Sbjct: 761  RTRKPPGWTRDYVTDLNSQEELQNLAAFCNNEDPISYDEAVKVEGWKQAMDQEIESIEKN 820

Query: 228  NTWKLVDLPVNTCSIGVKWVYKTKLNEEGKVEKHKARLVAKGYAQKYGIDYNEVFAPVAR 49
            NTW+LVDLP     IGVKWVYKTK NE G+VEK KARLVAKGY Q+YG+D+NEVFAPVAR
Sbjct: 821  NTWELVDLPKGVKKIGVKWVYKTKYNEHGEVEKLKARLVAKGYTQQYGVDFNEVFAPVAR 880

Query: 48   WDTIRAILAVAALRGW 1
            WDTIRAILAVAA +GW
Sbjct: 881  WDTIRAILAVAASKGW 896



 Score =  110 bits (274), Expect(2) = 6e-23
 Identities = 49/81 (60%), Positives = 58/81 (71%)
 Frame = -1

Query: 874 LWHCRFGHLSQKGLKILVQKNMVEGFPTLTESSKICDDCQIGKQHRESFPMESTWRVTKV 695
           LWH R+GHLS KGL  L +K+MV G P L ES ++C DC I KQHR+S P  S+WR T+ 
Sbjct: 406 LWHHRYGHLSFKGLHTLAKKDMVNGLPLLQESQELCSDCVISKQHRDSIPKTSSWRATEK 465

Query: 694 LELIHSDICGPITPASKSNKR 632
           LEL+HSDICGPITP S    R
Sbjct: 466 LELVHSDICGPITPTSNGGCR 486



 Score = 26.9 bits (58), Expect(2) = 6e-23
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 986 HLKVVFEDNSCKVFHRKRDL 927
           +L +VF  ++CK+FH +R L
Sbjct: 353 NLTIVFSKDTCKIFHEERGL 372


>gb|PNX66111.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 266

 Score =  169 bits (428), Expect = 4e-47
 Identities = 86/147 (58%), Positives = 109/147 (74%), Gaps = 1/147 (0%)
 Frame = -2

Query: 438 IQGKKRVDENKRTRRPPVWWNDYDTGNRALFEEMSLAVFSTA-DPTTFEEAVQSSVWQQA 262
           I  +  V+   R RRPP   ND+ TG   L +  +LAV+  A DPT+F EAV+S VW +A
Sbjct: 95  IDFQSEVNLPPRVRRPPQSLNDFVTGEE-LDQLHNLAVYVAAEDPTSFSEAVKSKVWIEA 153

Query: 261 MDSEIQAIERNNTWKLVDLPVNTCSIGVKWVYKTKLNEEGKVEKHKARLVAKGYAQKYGI 82
           M+ E+Q+IE+N TW+L  LP     IGVKW+YKTK NE+G+++KHKARLVAKGY QK+GI
Sbjct: 154 MNQEMQSIEKNQTWELTSLPDGANVIGVKWIYKTKHNEKGEIDKHKARLVAKGYNQKHGI 213

Query: 81  DYNEVFAPVARWDTIRAILAVAALRGW 1
           DY+EVFAPVARWDTIR+ILA+AA   W
Sbjct: 214 DYDEVFAPVARWDTIRSILAIAARESW 240


>dbj|GAU16533.1| hypothetical protein TSUD_167640 [Trifolium subterraneum]
          Length = 1103

 Score =  179 bits (454), Expect = 1e-46
 Identities = 86/142 (60%), Positives = 110/142 (77%), Gaps = 7/142 (4%)
 Frame = -2

Query: 405  RTRRPPVWWNDYDTG--NRALFEEMSLAVFS-----TADPTTFEEAVQSSVWQQAMDSEI 247
            RTR+PP W +DYDT      L +E S+   +     + DP++FEEAV+SS W+ AM+ EI
Sbjct: 781  RTRKPPFWHSDYDTTITEDELVDEDSMNFITFGPCTSEDPSSFEEAVKSSTWRLAMNKEI 840

Query: 246  QAIERNNTWKLVDLPVNTCSIGVKWVYKTKLNEEGKVEKHKARLVAKGYAQKYGIDYNEV 67
            +AIE+N TW+L DLP     IGVKW+YKTKLNE+G++EK+KARLVAKGYAQ+YG DY EV
Sbjct: 841  EAIEKNKTWQLTDLPQGAKVIGVKWIYKTKLNEKGEIEKYKARLVAKGYAQRYGTDYKEV 900

Query: 66   FAPVARWDTIRAILAVAALRGW 1
            FAPVARWDTIR++LA++A RGW
Sbjct: 901  FAPVARWDTIRSLLAISASRGW 922



 Score =  122 bits (306), Expect = 5e-27
 Identities = 56/85 (65%), Positives = 64/85 (75%)
 Frame = -1

Query: 886 DISHLWHCRFGHLSQKGLKILVQKNMVEGFPTLTESSKICDDCQIGKQHRESFPMESTWR 707
           DI+ LWHCR+GHL+ KGL+ L QKNMV G P   ES+ +C DC  GKQHRES P  S W+
Sbjct: 420 DITQLWHCRYGHLNIKGLQNLQQKNMVIGLPKFEESNHVCADCLRGKQHRESIPKTSNWK 479

Query: 706 VTKVLELIHSDICGPITPASKSNKR 632
            +K LELIHSDICGPITP S SNKR
Sbjct: 480 SSKRLELIHSDICGPITPVSNSNKR 504


>dbj|GAU16044.1| hypothetical protein TSUD_339150 [Trifolium subterraneum]
          Length = 1284

 Score =  179 bits (453), Expect = 2e-46
 Identities = 90/142 (63%), Positives = 107/142 (75%), Gaps = 7/142 (4%)
 Frame = -2

Query: 405  RTRRPPVWWNDYDTGNRALFEEM------SLAVF-STADPTTFEEAVQSSVWQQAMDSEI 247
            R+RRPP W  DY T    L E        +LAVF    DPT +E+AV+  VW+ AMD EI
Sbjct: 764  RSRRPPGWVRDYVTNIEELDEAEQAANLNNLAVFCDNEDPTCYEDAVKLVVWRHAMDQEI 823

Query: 246  QAIERNNTWKLVDLPVNTCSIGVKWVYKTKLNEEGKVEKHKARLVAKGYAQKYGIDYNEV 67
            ++IERN TW+LVDLP     IGVKWVYKTK NE G+V+KHKARLVAKGY+Q++GID+NEV
Sbjct: 824  ESIERNKTWELVDLPKGAKRIGVKWVYKTKYNENGEVDKHKARLVAKGYSQQHGIDFNEV 883

Query: 66   FAPVARWDTIRAILAVAALRGW 1
            FAPVARWDTIRAILA+AA +GW
Sbjct: 884  FAPVARWDTIRAILAIAASKGW 905



 Score = 99.4 bits (246), Expect(2) = 2e-19
 Identities = 42/82 (51%), Positives = 54/82 (65%)
 Frame = -1

Query: 877 HLWHCRFGHLSQKGLKILVQKNMVEGFPTLTESSKICDDCQIGKQHRESFPMESTWRVTK 698
           HLWH R+GHLS KGL  L ++ MV+G P L E+ ++C DC   K  R+S P  S+WR T 
Sbjct: 404 HLWHSRYGHLSFKGLHALAKREMVKGLPLLQETQELCSDCITSKHQRDSIPKSSSWRATT 463

Query: 697 VLELIHSDICGPITPASKSNKR 632
            L+L+HSDICGP+ P S    R
Sbjct: 464 NLQLVHSDICGPLNPPSNGGCR 485



 Score = 25.8 bits (55), Expect(2) = 2e-19
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 986 HLKVVFEDNSCKVFHRKRDL 927
           +L VVF  N CK++H  + L
Sbjct: 352 NLTVVFSKNDCKIYHEDKGL 371


>gb|PNX70305.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 213

 Score =  166 bits (419), Expect = 2e-46
 Identities = 83/153 (54%), Positives = 110/153 (71%), Gaps = 2/153 (1%)
 Frame = -2

Query: 453 PVRFKIQGKKRVDENKRTRRPPVWWNDYDTGNRALFEEM-SLAVFSTAD-PTTFEEAVQS 280
           P++        V    R RRPP  +NDY +G+    E++ +LA++S AD P  + EA + 
Sbjct: 7   PIQTPSDSDNEVALPPRNRRPPASYNDYVSGSELDDEDLHNLAIYSPADDPKNYAEAEKF 66

Query: 279 SVWQQAMDSEIQAIERNNTWKLVDLPVNTCSIGVKWVYKTKLNEEGKVEKHKARLVAKGY 100
            VW+ AMD EI+AI+ N+TW+L  LP  + +IGVKW+YKTK NE+G++EKHKARLVA+GY
Sbjct: 67  DVWRTAMDQEIEAIKNNDTWELTTLPEGSNAIGVKWIYKTKYNEKGEIEKHKARLVAEGY 126

Query: 99  AQKYGIDYNEVFAPVARWDTIRAILAVAALRGW 1
           +QK GIDYNEVFA VARWDTIR+ILA+AA   W
Sbjct: 127 SQKLGIDYNEVFALVARWDTIRSILALAAKEKW 159


>gb|PNX77239.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 803

 Score =  177 bits (450), Expect = 2e-46
 Identities = 86/141 (60%), Positives = 108/141 (76%), Gaps = 6/141 (4%)
 Frame = -2

Query: 405 RTRRPPVWWNDYDTGNRA-----LFEEMSLAVFSTAD-PTTFEEAVQSSVWQQAMDSEIQ 244
           R RRPP +  DY TGN         + +++A+F T+D P T+EEAV+S VW+ AM++EI+
Sbjct: 541 RPRRPPGYLRDYVTGNELPDDDDQLQNLAIAMFGTSDDPATYEEAVKSKVWRDAMEAEIK 600

Query: 243 AIERNNTWKLVDLPVNTCSIGVKWVYKTKLNEEGKVEKHKARLVAKGYAQKYGIDYNEVF 64
           +IE N TW+L  LP    +IGVKW+YKTKLNE+GKVEKHKARLVAKGY+QK+GIDY EVF
Sbjct: 601 SIESNGTWELTKLPKEAKAIGVKWIYKTKLNEKGKVEKHKARLVAKGYSQKHGIDYGEVF 660

Query: 63  APVARWDTIRAILAVAALRGW 1
           APVARWDTIR IL++AA   W
Sbjct: 661 APVARWDTIRTILSLAAFERW 681



 Score =  107 bits (266), Expect = 8e-22
 Identities = 45/87 (51%), Positives = 64/87 (73%)
 Frame = -1

Query: 892 QSDISHLWHCRFGHLSQKGLKILVQKNMVEGFPTLTESSKICDDCQIGKQHRESFPMEST 713
           +++ + LWH R+ HLS KGL++L +K+MV+G P L ++ + C DC  GKQHRE+ P ++ 
Sbjct: 181 KAEETELWHKRYAHLSIKGLRVLNKKHMVKGLPELRDTEEKCTDCLSGKQHRENMPKQAN 240

Query: 712 WRVTKVLELIHSDICGPITPASKSNKR 632
           WR +++LELIHSDICGPITP S    R
Sbjct: 241 WRASEILELIHSDICGPITPKSNGGNR 267


>gb|PNX58644.1| copia-type polyprotein [Trifolium pratense]
          Length = 274

 Score =  167 bits (422), Expect = 4e-46
 Identities = 81/138 (58%), Positives = 104/138 (75%), Gaps = 1/138 (0%)
 Frame = -2

Query: 411 NKRTRRPPVWWNDYDTGNRALFEEMSLAVFS-TADPTTFEEAVQSSVWQQAMDSEIQAIE 235
           +KR  + P + +D+ T      E  +LA+F+ + DP T+EEA +   W++ MD+EI AIE
Sbjct: 91  DKRXSKRPGYLDDFVTDEA---EMHNLAIFTPSTDPITYEEACKHDTWRKVMDAEIAAIE 147

Query: 234 RNNTWKLVDLPVNTCSIGVKWVYKTKLNEEGKVEKHKARLVAKGYAQKYGIDYNEVFAPV 55
            NNTW+L  LP  T  IGVKW+YKTK NE+GK+EK+KARLVAKGY+Q+ GIDYNEVFAPV
Sbjct: 148 SNNTWELTALPAGTKKIGVKWIYKTKYNEQGKIEKYKARLVAKGYSQQQGIDYNEVFAPV 207

Query: 54  ARWDTIRAILAVAALRGW 1
           ARWDTIR ILA+AAL+ W
Sbjct: 208 ARWDTIRTILAIAALKNW 225


>gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1316

 Score =  177 bits (449), Expect = 7e-46
 Identities = 87/146 (59%), Positives = 110/146 (75%), Gaps = 3/146 (2%)
 Frame = -2

Query: 429  KKRVDENKRTRRPPVWWNDYDTGNRALFEEMS--LAVF-STADPTTFEEAVQSSVWQQAM 259
            ++ + E  RTR  P+W  DY +G     EE +  + +F S  DPTTFEEA +S+ W+ AM
Sbjct: 762  EEEILEEGRTRLQPIWMQDYVSGEGLSEEEETNNIVMFTSVTDPTTFEEAFKSAKWKAAM 821

Query: 258  DSEIQAIERNNTWKLVDLPVNTCSIGVKWVYKTKLNEEGKVEKHKARLVAKGYAQKYGID 79
            D EI+AIERN+TW+L  LP    +IGVKW++KTKLNE G+VEK KARLVAKGYAQ+YGID
Sbjct: 822  DQEIEAIERNHTWELTILPAGAKTIGVKWIFKTKLNENGEVEKCKARLVAKGYAQQYGID 881

Query: 78   YNEVFAPVARWDTIRAILAVAALRGW 1
            Y EVFAPVARWDTIR ++A+AA +GW
Sbjct: 882  YTEVFAPVARWDTIRMVIALAAQKGW 907



 Score =  119 bits (299), Expect = 5e-26
 Identities = 53/88 (60%), Positives = 63/88 (71%)
 Frame = -1

Query: 895 VQSDISHLWHCRFGHLSQKGLKILVQKNMVEGFPTLTESSKICDDCQIGKQHRESFPMES 716
           V  D +HLWHCR+GHLS KGL+ L  + MV+G P    SSK+C DC +GKQHRES P +S
Sbjct: 425 VSEDNTHLWHCRYGHLSFKGLRSLQYRKMVKGLPDFKMSSKLCKDCMVGKQHRESIPKKS 484

Query: 715 TWRVTKVLELIHSDICGPITPASKSNKR 632
            WR +  L+LIHSDICGPI P S S KR
Sbjct: 485 MWRASHRLQLIHSDICGPIKPLSNSRKR 512


>ref|XP_014623252.1| PREDICTED: uncharacterized mitochondrial protein AtMg00820-like
           [Glycine max]
          Length = 154

 Score =  162 bits (410), Expect = 7e-46
 Identities = 78/141 (55%), Positives = 106/141 (75%), Gaps = 5/141 (3%)
 Frame = -2

Query: 408 KRTRRPPVWWNDYDTGNRALFE---EMSLAVFST--ADPTTFEEAVQSSVWQQAMDSEIQ 244
           +R RRPP+W  DY+TG   L E   E +LA+ +T  +DPT F+ AVQ + W++AMD E++
Sbjct: 12  RRCRRPPLWMEDYETGE-GLSEGSTEANLAMSATGESDPTHFDAAVQIAKWRKAMDEEME 70

Query: 243 AIERNNTWKLVDLPVNTCSIGVKWVYKTKLNEEGKVEKHKARLVAKGYAQKYGIDYNEVF 64
           AI +N TW+L++LP     +GVKW+YKTK  E G+V+K+KARLV KGYAQ+YG+DY EVF
Sbjct: 71  AINKNGTWELMELPDGAKKVGVKWIYKTKFKENGEVDKYKARLVVKGYAQEYGVDYTEVF 130

Query: 63  APVARWDTIRAILAVAALRGW 1
           APVAR  TIR ++A+AA +GW
Sbjct: 131 APVARMKTIRLVVALAAQKGW 151


>gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1044

 Score =  177 bits (448), Expect = 8e-46
 Identities = 87/146 (59%), Positives = 110/146 (75%), Gaps = 3/146 (2%)
 Frame = -2

Query: 429 KKRVDENKRTRRPPVWWNDYDTGNRALFEEMS--LAVFS-TADPTTFEEAVQSSVWQQAM 259
           ++ + E  RTR  PVW  DY +G     EE +  + +F+   DPTTFEEA +S+ W+ AM
Sbjct: 490 EEEILEEGRTRMQPVWMQDYVSGEGLSEEEETNNIVMFTYVTDPTTFEEAFKSAKWKAAM 549

Query: 258 DSEIQAIERNNTWKLVDLPVNTCSIGVKWVYKTKLNEEGKVEKHKARLVAKGYAQKYGID 79
           D EI+AIERN+TW+L  LP    +IGVKW++KTKLNE G+VEK KARLVAKGYAQ+YGID
Sbjct: 550 DQEIEAIERNHTWELTILPAGAKTIGVKWIFKTKLNENGEVEKCKARLVAKGYAQQYGID 609

Query: 78  YNEVFAPVARWDTIRAILAVAALRGW 1
           Y EVFAPVARWDTIR ++A+AA +GW
Sbjct: 610 YTEVFAPVARWDTIRMVIALAAKKGW 635



 Score =  120 bits (300), Expect = 3e-26
 Identities = 53/88 (60%), Positives = 63/88 (71%)
 Frame = -1

Query: 895 VQSDISHLWHCRFGHLSQKGLKILVQKNMVEGFPTLTESSKICDDCQIGKQHRESFPMES 716
           V  D +HLWHCR+GHLS KGL+ L  + MV+G P    SSK+C DC +GKQHRES P +S
Sbjct: 144 VSEDNTHLWHCRYGHLSFKGLRTLQYRKMVKGLPDFKMSSKLCKDCMVGKQHRESIPKKS 203

Query: 715 TWRVTKVLELIHSDICGPITPASKSNKR 632
            WR +  L+LIHSDICGPI P S S KR
Sbjct: 204 MWRASHRLQLIHSDICGPIKPLSNSRKR 231


>gb|PRQ38020.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 610

 Score =  174 bits (440), Expect = 9e-46
 Identities = 93/169 (55%), Positives = 120/169 (71%), Gaps = 6/169 (3%)
 Frame = -2

Query: 489 AMLAASTNNTVTPVRFKIQGKKRVDENKRTRRPPVWWNDYDTG-NRALFEEM----SLAV 325
           A +A +TNN+ +      Q   +  E +R RR PVW +DY +G    L +E     +LAV
Sbjct: 35  ATVAEATNNSSSSTTS--QAIPQAIEEERERRQPVWMSDYVSGVGLGLSDEEGELHNLAV 92

Query: 324 FST-ADPTTFEEAVQSSVWQQAMDSEIQAIERNNTWKLVDLPVNTCSIGVKWVYKTKLNE 148
           F+T  DP  FEEAV  S W+ AM  EI+AIERNNTW+L+D P+   +IGVKWV+KTK NE
Sbjct: 93  FTTNEDPMDFEEAVSQSKWRLAMKKEIEAIERNNTWELIDWPLGVKTIGVKWVFKTKYNE 152

Query: 147 EGKVEKHKARLVAKGYAQKYGIDYNEVFAPVARWDTIRAILAVAALRGW 1
           +G+V+K KARLVAKGYAQ++GIDY EV+APVARWDTIR I+A+AA + W
Sbjct: 153 KGEVDKCKARLVAKGYAQRFGIDYTEVYAPVARWDTIRMIIALAAQKNW 201


>gb|PNX70402.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 204

 Score =  163 bits (413), Expect = 1e-45
 Identities = 83/141 (58%), Positives = 105/141 (74%), Gaps = 6/141 (4%)
 Frame = -2

Query: 405 RTRRPPVWWNDYDTGNRALFEEMS-----LAVFST-ADPTTFEEAVQSSVWQQAMDSEIQ 244
           R R+P V  NDY TG RA  E+       LAV +T  DP T+ EA +  VW+QAMD E++
Sbjct: 48  RIRKPSVRLNDYVTG-RAAEEDTDENLHYLAVMNTNEDPITYSEAAKLDVWKQAMDVEME 106

Query: 243 AIERNNTWKLVDLPVNTCSIGVKWVYKTKLNEEGKVEKHKARLVAKGYAQKYGIDYNEVF 64
           +I+ N+TW+L  LP    +IGVKW+YKTK NE+G+++K+KARLVAKGY QK+GIDY EVF
Sbjct: 107 SIKNNDTWELTTLPTGCNAIGVKWIYKTKYNEKGEIDKYKARLVAKGYTQKHGIDYKEVF 166

Query: 63  APVARWDTIRAILAVAALRGW 1
           APVARWDTIRAI+A AA +GW
Sbjct: 167 APVARWDTIRAIIAFAANKGW 187