BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus22_contig00015206
         (540 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KHN21230.1| Retrovirus-related Pol polyprotein from transposo...   187   6e-59
gb|KYP62479.1| Retrovirus-related Pol polyprotein from transposo...   171   2e-55
gb|PNX91972.1| retrovirus-related Pol polyprotein from transposo...   168   8e-53
dbj|GAU31266.1| hypothetical protein TSUD_153410 [Trifolium subt...   167   5e-52
gb|PNX93462.1| histone deacetylase, partial [Trifolium pratense]      165   1e-51
gb|PNY05793.1| histone deacetylase [Trifolium pratense]               164   1e-51
dbj|GAU13081.1| hypothetical protein TSUD_173810 [Trifolium subt...   164   2e-51
gb|PNX78102.1| retrovirus-related Pol polyprotein from transposo...   165   2e-51
gb|PNX93473.1| retrovirus-related Pol polyprotein from transposo...   164   3e-51
gb|PNY08092.1| histone deacetylase [Trifolium pratense]               160   4e-51
dbj|GAU32278.1| hypothetical protein TSUD_62940 [Trifolium subte...   160   3e-50
gb|PNX92906.1| retrovirus-related Pol polyprotein from transposo...   164   3e-50
gb|PNX97517.1| retrovirus-related Pol polyprotein from transposo...   156   5e-50
dbj|GAU19342.1| hypothetical protein TSUD_336290 [Trifolium subt...   158   6e-50
gb|PNX93258.1| histone deacetylase, partial [Trifolium pratense]      159   1e-49
gb|PNY12955.1| retrovirus-related Pol polyprotein from transposo...   159   1e-49
gb|PNX94499.1| retrovirus-related Pol polyprotein from transposo...   160   1e-49
gb|PNX77046.1| retrovirus-related Pol polyprotein from transposo...   158   1e-49
gb|PNX84939.1| retrovirus-related Pol polyprotein from transposo...   158   1e-49
gb|PNX77250.1| retrovirus-related Pol polyprotein from transposo...   158   1e-49

>gb|KHN21230.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1429

 Score =  187 bits (476), Expect(2) = 6e-59
 Identities = 90/136 (66%), Positives = 111/136 (81%)
 Frame = -3

Query: 409  VKTSPRAWYDRLTKTLITFGFQQCRCDPSLLIFNKNGCCIYMLIYVDDIILTGSSPTMIQ 230
            +K +PRAWY+ LT TLI+FGFQQ +CDPSLLIFNK+GCC+ +LIYVDDII+TGSS T I 
Sbjct: 1064 LKQAPRAWYESLTNTLISFGFQQSKCDPSLLIFNKHGCCLLILIYVDDIIITGSSNTAIN 1123

Query: 229  QLITKLDSVFSLKQLGDLDYFLGIEVKRTFNGNLLLSQGKYVRDLLQRAEMDGCKSITTP 50
             ++ KL++ FSLKQLG L+YFLGIE K T +G L LSQ KY+RD+L RA M+ CK I+TP
Sbjct: 1124 LIVNKLNATFSLKQLGTLEYFLGIECKLTPSGALHLSQAKYIRDILHRAGMEDCKGISTP 1183

Query: 49   LPAAVKLSKAGADFFE 2
            LPA +KLSK GAD F+
Sbjct: 1184 LPANLKLSKTGADPFD 1199



 Score = 67.8 bits (164), Expect(2) = 6e-59
 Identities = 37/62 (59%), Positives = 41/62 (66%), Gaps = 14/62 (22%)
 Frame = -1

Query: 540  VRIILTIALTNNWPLKQVDVNNVFLNGYLDEDVYMTQ--------------LNKAIYGLK 403
            VR +LTIALT+ WPL Q+DVNN FLNG L EDVYM Q              L+KAIYGLK
Sbjct: 1006 VRTVLTIALTSKWPLIQLDVNNAFLNGQLHEDVYMQQPQGFIQGESTLVCKLHKAIYGLK 1065

Query: 402  QA 397
            QA
Sbjct: 1066 QA 1067


>gb|KYP62479.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 293

 Score =  171 bits (434), Expect(2) = 2e-55
 Identities = 80/120 (66%), Positives = 102/120 (85%)
 Frame = -3

Query: 409 VKTSPRAWYDRLTKTLITFGFQQCRCDPSLLIFNKNGCCIYMLIYVDDIILTGSSPTMIQ 230
           +K +PRAWYDRLTKTL+ FGF Q RCDPSLLI+ ++  CIYMLIYVDDII+TG+S +++Q
Sbjct: 173 LKQAPRAWYDRLTKTLLGFGFVQSRCDPSLLIYKQSQVCIYMLIYVDDIIVTGNSHSLVQ 232

Query: 229 QLITKLDSVFSLKQLGDLDYFLGIEVKRTFNGNLLLSQGKYVRDLLQRAEMDGCKSITTP 50
             I+KL+ VF+LKQLGDLDYFLGIEVKRT +G+++L+Q KY+RDLLQR +M   K I+TP
Sbjct: 233 SFISKLNGVFALKQLGDLDYFLGIEVKRTNSGSVILNQAKYIRDLLQRTDMYNAKGISTP 292



 Score = 72.0 bits (175), Expect(2) = 2e-55
 Identities = 35/62 (56%), Positives = 44/62 (70%), Gaps = 14/62 (22%)
 Frame = -1

Query: 540 VRIILTIALTNNWPLKQVDVNNVFLNGYLDEDVYMTQ--------------LNKAIYGLK 403
           +R+ILT+ +T +WP+KQVD+NN FLNG+L+EDVYM Q              LNKAIYGLK
Sbjct: 115 IRVILTLDVTYHWPIKQVDINNAFLNGFLEEDVYMMQPPGFEVSDKTLVCKLNKAIYGLK 174

Query: 402 QA 397
           QA
Sbjct: 175 QA 176


>gb|PNX91972.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1516

 Score =  168 bits (426), Expect(2) = 8e-53
 Identities = 77/132 (58%), Positives = 106/132 (80%)
 Frame = -3

Query: 409  VKTSPRAWYDRLTKTLITFGFQQCRCDPSLLIFNKNGCCIYMLIYVDDIILTGSSPTMIQ 230
            +K +PR W+DRLT TL+ FGF+  +CDPSL  +++N   +Y+L+YVDDII+TGSS T++Q
Sbjct: 1149 LKQAPRQWFDRLTTTLLQFGFKASKCDPSLFTYSQNKQVVYLLVYVDDIIITGSSSTLVQ 1208

Query: 229  QLITKLDSVFSLKQLGDLDYFLGIEVKRTFNGNLLLSQGKYVRDLLQRAEMDGCKSITTP 50
             L+ KLDS+FSLKQLGDL+YFLGIEVKR+ + +LLL+QGKY++DLL +  M  CK I TP
Sbjct: 1209 TLVQKLDSIFSLKQLGDLEYFLGIEVKRSPDSSLLLTQGKYIKDLLLKTNMLDCKPINTP 1268

Query: 49   LPAAVKLSKAGA 14
            + ++ KLSK G+
Sbjct: 1269 MMSSCKLSKVGS 1280



 Score = 66.6 bits (161), Expect(2) = 8e-53
 Identities = 33/62 (53%), Positives = 43/62 (69%), Gaps = 14/62 (22%)
 Frame = -1

Query: 540  VRIILTIALTNNWPLKQVDVNNVFLNGYLDEDVYMTQ--------------LNKAIYGLK 403
            +R+IL++A++  WPLKQ+DVNN FLNG L+E+VYM Q              LNKA+YGLK
Sbjct: 1091 IRLILSLAVSYKWPLKQLDVNNAFLNGLLEEEVYMIQPPGFEEADENLVCKLNKALYGLK 1150

Query: 402  QA 397
            QA
Sbjct: 1151 QA 1152


>dbj|GAU31266.1| hypothetical protein TSUD_153410 [Trifolium subterraneum]
          Length = 844

 Score =  167 bits (424), Expect(2) = 5e-52
 Identities = 77/133 (57%), Positives = 103/133 (77%)
 Frame = -3

Query: 409 VKTSPRAWYDRLTKTLITFGFQQCRCDPSLLIFNKNGCCIYMLIYVDDIILTGSSPTMIQ 230
           +K +PR W+D+LT TLI FGF   +CDPSL I+++    +Y+L+YVDDII+ GSSPT++Q
Sbjct: 483 LKQAPRQWFDKLTTTLIQFGFNASKCDPSLFIYSQKSQVVYLLVYVDDIIIIGSSPTLVQ 542

Query: 229 QLITKLDSVFSLKQLGDLDYFLGIEVKRTFNGNLLLSQGKYVRDLLQRAEMDGCKSITTP 50
            L+ KLD+VFSLKQLGDLDYFLGIEVK   +G+LLL+Q KY++DLL +  M  C  I TP
Sbjct: 543 HLVDKLDAVFSLKQLGDLDYFLGIEVKHLKDGSLLLTQTKYIKDLLVKTNMFDCNPIATP 602

Query: 49  LPAAVKLSKAGAD 11
           + ++ KLSK G+D
Sbjct: 603 MMSSCKLSKVGSD 615



 Score = 64.7 bits (156), Expect(2) = 5e-52
 Identities = 30/62 (48%), Positives = 42/62 (67%), Gaps = 14/62 (22%)
 Frame = -1

Query: 540 VRIILTIALTNNWPLKQVDVNNVFLNGYLDEDVYMTQ--------------LNKAIYGLK 403
           +R+IL++ ++  WP++Q+D+NN FLNG LDE+VYM Q              LNKA+YGLK
Sbjct: 425 IRLILSLGISYKWPIRQLDINNAFLNGSLDEEVYMVQPQGFESTDATLVCKLNKALYGLK 484

Query: 402 QA 397
           QA
Sbjct: 485 QA 486


>gb|PNX93462.1| histone deacetylase, partial [Trifolium pratense]
          Length = 1489

 Score =  165 bits (417), Expect(2) = 1e-51
 Identities = 77/133 (57%), Positives = 104/133 (78%)
 Frame = -3

Query: 409  VKTSPRAWYDRLTKTLITFGFQQCRCDPSLLIFNKNGCCIYMLIYVDDIILTGSSPTMIQ 230
            +K +PR W+D+LT TLI FGF+  +CDPSL I++KN   +Y+L+YVDDII+TGSSP ++Q
Sbjct: 1128 LKQAPRQWFDKLTSTLIQFGFKASKCDPSLFIYSKNCQIVYLLVYVDDIIITGSSPDLVQ 1187

Query: 229  QLITKLDSVFSLKQLGDLDYFLGIEVKRTFNGNLLLSQGKYVRDLLQRAEMDGCKSITTP 50
             L+ KLDSVFSLKQLG+L+YFLGIEVK   +G+LLL+Q KY++DLL +  M     I TP
Sbjct: 1188 HLVNKLDSVFSLKQLGELEYFLGIEVKNLSDGSLLLTQTKYIKDLLIKTNMLDSNPIATP 1247

Query: 49   LPAAVKLSKAGAD 11
            + ++ KLSK G+D
Sbjct: 1248 MMSSCKLSKIGSD 1260



 Score = 66.2 bits (160), Expect(2) = 1e-51
 Identities = 32/62 (51%), Positives = 43/62 (69%), Gaps = 14/62 (22%)
 Frame = -1

Query: 540  VRIILTIALTNNWPLKQVDVNNVFLNGYLDEDVYMTQ--------------LNKAIYGLK 403
            +R+IL++A++  WPLKQ+D+NN FLNG L+E+VYM Q              LNKA+YGLK
Sbjct: 1070 IRLILSLAISYKWPLKQLDINNAFLNGSLNEEVYMVQPQGFEEKDSSLVCKLNKALYGLK 1129

Query: 402  QA 397
            QA
Sbjct: 1130 QA 1131


>gb|PNY05793.1| histone deacetylase [Trifolium pratense]
          Length = 1485

 Score =  164 bits (415), Expect(2) = 1e-51
 Identities = 79/133 (59%), Positives = 100/133 (75%)
 Frame = -3

Query: 409  VKTSPRAWYDRLTKTLITFGFQQCRCDPSLLIFNKNGCCIYMLIYVDDIILTGSSPTMIQ 230
            +K +PRAWY+RLT  LITFGF + RCDPSLL+++ NG  IY+LIYVDDI++TGS+P +IQ
Sbjct: 1121 LKQAPRAWYERLTAALITFGFTKSRCDPSLLVYDLNGSTIYVLIYVDDILITGSAPQLIQ 1180

Query: 229  QLITKLDSVFSLKQLGDLDYFLGIEVKRTFNGNLLLSQGKYVRDLLQRAEMDGCKSITTP 50
             LI KL   FSLKQLG LDYFLGIEV    +G +LL+Q KY+RDLL +A MD    I +P
Sbjct: 1181 DLINKLHQQFSLKQLGQLDYFLGIEVHHLASGAILLNQAKYIRDLLCKANMDEANGIGSP 1240

Query: 49   LPAAVKLSKAGAD 11
            + +  +LSK G D
Sbjct: 1241 MVSTCRLSKFGTD 1253



 Score = 67.0 bits (162), Expect(2) = 1e-51
 Identities = 31/62 (50%), Positives = 43/62 (69%), Gaps = 14/62 (22%)
 Frame = -1

Query: 540  VRIILTIALTNNWPLKQVDVNNVFLNGYLDEDVYMTQ--------------LNKAIYGLK 403
            +RIILT+A+TN W ++Q+D+NN FLNG+L E+VYM Q              LN+++YGLK
Sbjct: 1063 IRIILTLAVTNKWTVQQIDINNAFLNGFLQEEVYMVQPPGFEHSDKTLVCKLNRSLYGLK 1122

Query: 402  QA 397
            QA
Sbjct: 1123 QA 1124


>dbj|GAU13081.1| hypothetical protein TSUD_173810 [Trifolium subterraneum]
          Length = 1295

 Score =  164 bits (416), Expect(2) = 2e-51
 Identities = 77/132 (58%), Positives = 102/132 (77%)
 Frame = -3

Query: 409  VKTSPRAWYDRLTKTLITFGFQQCRCDPSLLIFNKNGCCIYMLIYVDDIILTGSSPTMIQ 230
            +K +PR W+DRLT  L+ FGFQ  +CDPSL  + KN   +Y+L+YVDDII+TGSS T++Q
Sbjct: 1050 LKQAPRQWFDRLTTALLQFGFQASKCDPSLFTYTKNRQVVYLLVYVDDIIITGSSSTLVQ 1109

Query: 229  QLITKLDSVFSLKQLGDLDYFLGIEVKRTFNGNLLLSQGKYVRDLLQRAEMDGCKSITTP 50
             L+ KLDSVFSLKQLGDL+YFLGIEVK+  + +LLL+Q KY++DLL +  M  CK I TP
Sbjct: 1110 TLVQKLDSVFSLKQLGDLEYFLGIEVKQLPDKSLLLTQSKYIKDLLVKTNMVDCKPINTP 1169

Query: 49   LPAAVKLSKAGA 14
            + ++ KLSK G+
Sbjct: 1170 MMSSCKLSKVGS 1181



 Score = 65.5 bits (158), Expect(2) = 2e-51
 Identities = 32/62 (51%), Positives = 42/62 (67%), Gaps = 14/62 (22%)
 Frame = -1

Query: 540  VRIILTIALTNNWPLKQVDVNNVFLNGYLDEDVYMTQ--------------LNKAIYGLK 403
            +R+IL++ ++  WPLKQ+DVNN FLNG L+E+VYM Q              LNKA+YGLK
Sbjct: 992  IRLILSLVVSYKWPLKQLDVNNAFLNGLLEEEVYMVQLPGFEVPDANLVCKLNKALYGLK 1051

Query: 402  QA 397
            QA
Sbjct: 1052 QA 1053


>gb|PNX78102.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Trifolium pratense]
          Length = 535

 Score =  165 bits (418), Expect(2) = 2e-51
 Identities = 74/136 (54%), Positives = 107/136 (78%)
 Frame = -3

Query: 409 VKTSPRAWYDRLTKTLITFGFQQCRCDPSLLIFNKNGCCIYMLIYVDDIILTGSSPTMIQ 230
           +K +PRAWYDRLT+TL+  GF + RCDPSLL+ ++NG C Y+L+YVDDI++TGS+P +I+
Sbjct: 169 LKQAPRAWYDRLTQTLLQMGFTKSRCDPSLLVHHQNGACTYVLVYVDDILITGSAPHLIK 228

Query: 229 QLITKLDSVFSLKQLGDLDYFLGIEVKRTFNGNLLLSQGKYVRDLLQRAEMDGCKSITTP 50
            LI KL+  F+LKQLG++DYFLG+EV  + +G++LL Q KY++DLL + +M+ CK I +P
Sbjct: 229 DLIHKLNIKFALKQLGEVDYFLGLEVHHSTSGSILLHQSKYIKDLLCKTKMENCKPIGSP 288

Query: 49  LPAAVKLSKAGADFFE 2
           + ++ KLSK G D  E
Sbjct: 289 MVSSCKLSKFGTDTME 304



 Score = 64.7 bits (156), Expect(2) = 2e-51
 Identities = 32/62 (51%), Positives = 42/62 (67%), Gaps = 14/62 (22%)
 Frame = -1

Query: 540 VRIILTIALTNNWPLKQVDVNNVFLNGYLDEDVYMTQ--------------LNKAIYGLK 403
           +RIILT+A+T  W ++Q+D+NN FLNG L E+VYMTQ              L+KA+YGLK
Sbjct: 111 IRIILTLAVTYKWSVQQIDINNAFLNGILQEEVYMTQPPGFESSDKNLVCKLHKALYGLK 170

Query: 402 QA 397
           QA
Sbjct: 171 QA 172


>gb|PNX93473.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1181

 Score =  164 bits (415), Expect(2) = 3e-51
 Identities = 77/133 (57%), Positives = 103/133 (77%)
 Frame = -3

Query: 409  VKTSPRAWYDRLTKTLITFGFQQCRCDPSLLIFNKNGCCIYMLIYVDDIILTGSSPTMIQ 230
            +K +PR W+D+L  TLI FGF+  +CDPSL I++ N   +Y+L+YVDDII+TGSS T++Q
Sbjct: 820  LKQAPRQWFDKLATTLIQFGFKASKCDPSLFIYSHNRQVVYLLVYVDDIIITGSSLTLVQ 879

Query: 229  QLITKLDSVFSLKQLGDLDYFLGIEVKRTFNGNLLLSQGKYVRDLLQRAEMDGCKSITTP 50
             L+TKLDSVFSLKQLG+LDYFLGIEVK   +G+LLL+Q KY++DLL +  M     I TP
Sbjct: 880  HLVTKLDSVFSLKQLGNLDYFLGIEVKHLTDGSLLLTQSKYIKDLLVKTNMIDSNPIATP 939

Query: 49   LPAAVKLSKAGAD 11
            + ++ KLSK G+D
Sbjct: 940  MMSSCKLSKVGSD 952



 Score = 65.5 bits (158), Expect(2) = 3e-51
 Identities = 32/62 (51%), Positives = 41/62 (66%), Gaps = 14/62 (22%)
 Frame = -1

Query: 540 VRIILTIALTNNWPLKQVDVNNVFLNGYLDEDVYMTQ--------------LNKAIYGLK 403
           +R+IL +A++  WPLKQ+D+NN FLNG LDE+VYM Q              L KA+YGLK
Sbjct: 762 IRLILALAISYKWPLKQLDINNAFLNGSLDEEVYMVQPQGFETTDSSLVCKLQKALYGLK 821

Query: 402 QA 397
           QA
Sbjct: 822 QA 823


>gb|PNY08092.1| histone deacetylase [Trifolium pratense]
          Length = 1339

 Score =  160 bits (406), Expect(2) = 4e-51
 Identities = 74/133 (55%), Positives = 105/133 (78%)
 Frame = -3

Query: 409  VKTSPRAWYDRLTKTLITFGFQQCRCDPSLLIFNKNGCCIYMLIYVDDIILTGSSPTMIQ 230
            +K +PR W+D+LT TL+ FGF+  +CDPSL  ++K+   +Y+L+YVDDII+TGSS T++Q
Sbjct: 978  LKQAPRQWFDKLTTTLLQFGFKASKCDPSLFTYSKDRQVVYLLVYVDDIIITGSSITLVQ 1037

Query: 229  QLITKLDSVFSLKQLGDLDYFLGIEVKRTFNGNLLLSQGKYVRDLLQRAEMDGCKSITTP 50
             L+ KLDSVFSLKQLG+LDYFLGIEV++  + +LLL+Q KY++DLL +  M  CK I TP
Sbjct: 1038 TLVEKLDSVFSLKQLGNLDYFLGIEVQQLSDNSLLLTQSKYIKDLLVKTNMLECKPIATP 1097

Query: 49   LPAAVKLSKAGAD 11
            + ++ KLSK G++
Sbjct: 1098 MMSSCKLSKVGSN 1110



 Score = 68.6 bits (166), Expect(2) = 4e-51
 Identities = 34/62 (54%), Positives = 43/62 (69%), Gaps = 14/62 (22%)
 Frame = -1

Query: 540  VRIILTIALTNNWPLKQVDVNNVFLNGYLDEDVYMTQ--------------LNKAIYGLK 403
            +R+IL++A++  WPLKQ+DVNN FLNG LDE+VYM Q              LNKA+YGLK
Sbjct: 920  IRLILSLAISYKWPLKQLDVNNAFLNGSLDEEVYMVQPQGFEVSDSSLVCKLNKALYGLK 979

Query: 402  QA 397
            QA
Sbjct: 980  QA 981


>dbj|GAU32278.1| hypothetical protein TSUD_62940 [Trifolium subterraneum]
          Length = 1409

 Score =  160 bits (404), Expect(2) = 3e-50
 Identities = 76/129 (58%), Positives = 100/129 (77%)
 Frame = -3

Query: 409  VKTSPRAWYDRLTKTLITFGFQQCRCDPSLLIFNKNGCCIYMLIYVDDIILTGSSPTMIQ 230
            +K +PR W+DRLT TL+ FGFQ  +CDPSL  + K+   +Y+L+YVDDII+TGSSP +IQ
Sbjct: 1073 LKQAPRQWFDRLTTTLLHFGFQAGKCDPSLFTYTKDRQVVYLLVYVDDIIITGSSPALIQ 1132

Query: 229  QLITKLDSVFSLKQLGDLDYFLGIEVKRTFNGNLLLSQGKYVRDLLQRAEMDGCKSITTP 50
             L+ KL SVFSLKQLGDL+YFLGIEVK+  + +LLL+Q KY++DLL +  M  CK I TP
Sbjct: 1133 SLVEKLHSVFSLKQLGDLEYFLGIEVKQLSDQSLLLTQSKYIKDLLIKTNMLDCKPINTP 1192

Query: 49   LPAAVKLSK 23
            + ++ KLSK
Sbjct: 1193 MMSSCKLSK 1201



 Score = 66.6 bits (161), Expect(2) = 3e-50
 Identities = 33/62 (53%), Positives = 43/62 (69%), Gaps = 14/62 (22%)
 Frame = -1

Query: 540  VRIILTIALTNNWPLKQVDVNNVFLNGYLDEDVYMTQ--------------LNKAIYGLK 403
            +R+IL++A++  WPLKQ+DVNN FLNG L+E+VYM Q              LNKA+YGLK
Sbjct: 1015 IRLILSLAVSYKWPLKQLDVNNAFLNGTLEEEVYMVQPPGFEVSDTSLVCKLNKALYGLK 1074

Query: 402  QA 397
            QA
Sbjct: 1075 QA 1076


>gb|PNX92906.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1196

 Score =  164 bits (414), Expect(2) = 3e-50
 Identities = 76/133 (57%), Positives = 104/133 (78%)
 Frame = -3

Query: 409  VKTSPRAWYDRLTKTLITFGFQQCRCDPSLLIFNKNGCCIYMLIYVDDIILTGSSPTMIQ 230
            +K +PRAWY+RLT+TL+  GF   +CDPSLLI ++ G C Y+LIYVDDI++TGS+P +IQ
Sbjct: 832  LKQAPRAWYERLTQTLLQMGFVASKCDPSLLIHHQQGACTYVLIYVDDILITGSAPHLIQ 891

Query: 229  QLITKLDSVFSLKQLGDLDYFLGIEVKRTFNGNLLLSQGKYVRDLLQRAEMDGCKSITTP 50
             LI KL+  FSLKQLG++DYFLGIEV    +G LLL+Q KY++DLL R +M+ CK+I +P
Sbjct: 892  DLIHKLNIQFSLKQLGEVDYFLGIEVHHMPSGGLLLNQSKYIKDLLSRTKMENCKAIGSP 951

Query: 49   LPAAVKLSKAGAD 11
            + ++ +LSK G D
Sbjct: 952  MVSSCRLSKFGTD 964



 Score = 62.4 bits (150), Expect(2) = 3e-50
 Identities = 31/62 (50%), Positives = 42/62 (67%), Gaps = 14/62 (22%)
 Frame = -1

Query: 540 VRIILTIALTNNWPLKQVDVNNVFLNGYLDEDVYMTQ--------------LNKAIYGLK 403
           +RIILT+A+T  W ++Q+DVNN FLNG L E+VYM+Q              L+K++YGLK
Sbjct: 774 IRIILTLAVTYKWAVQQIDVNNAFLNGLLQEEVYMSQPSGFEVADKSLVCKLHKSLYGLK 833

Query: 402 QA 397
           QA
Sbjct: 834 QA 835


>gb|PNX97517.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 612

 Score =  156 bits (395), Expect(2) = 5e-50
 Identities = 74/133 (55%), Positives = 100/133 (75%)
 Frame = -3

Query: 409 VKTSPRAWYDRLTKTLITFGFQQCRCDPSLLIFNKNGCCIYMLIYVDDIILTGSSPTMIQ 230
           +K + R W+DRLT TL+ FGF+  +CDPSL  + K+   +Y+L+YVDDII+ GSS  ++ 
Sbjct: 300 LKQALRQWFDRLTSTLLQFGFKASKCDPSLFTYLKDRQVVYLLVYVDDIIIIGSSTKLVH 359

Query: 229 QLITKLDSVFSLKQLGDLDYFLGIEVKRTFNGNLLLSQGKYVRDLLQRAEMDGCKSITTP 50
            LI KLDSVFSLKQLGDL+YFLGIEVK+  + +LLL+Q KY++DLL +  M  CK I TP
Sbjct: 360 SLIQKLDSVFSLKQLGDLEYFLGIEVKQLADSSLLLTQSKYIKDLLAKTNMLDCKPINTP 419

Query: 49  LPAAVKLSKAGAD 11
           + ++ KLSK G+D
Sbjct: 420 MMSSCKLSKVGSD 432



 Score = 69.3 bits (168), Expect(2) = 5e-50
 Identities = 34/62 (54%), Positives = 44/62 (70%), Gaps = 14/62 (22%)
 Frame = -1

Query: 540 VRIILTIALTNNWPLKQVDVNNVFLNGYLDEDVYMTQ--------------LNKAIYGLK 403
           +R+IL++A++ NWPLKQ+DVNN FLNG L+E+VYM Q              LNKA+YGLK
Sbjct: 242 IRLILSLAVSYNWPLKQLDVNNAFLNGLLEEEVYMVQPPGFEDTDTSLVCKLNKALYGLK 301

Query: 402 QA 397
           QA
Sbjct: 302 QA 303


>dbj|GAU19342.1| hypothetical protein TSUD_336290 [Trifolium subterraneum]
          Length = 1442

 Score =  158 bits (399), Expect(2) = 6e-50
 Identities = 76/135 (56%), Positives = 102/135 (75%)
 Frame = -3

Query: 409  VKTSPRAWYDRLTKTLITFGFQQCRCDPSLLIFNKNGCCIYMLIYVDDIILTGSSPTMIQ 230
            +K +PRAWY++LT+TL+TFGF + +CDPSLL+ + NG   Y+LIYVDDI++TGS+P +IQ
Sbjct: 1078 LKQAPRAWYEKLTQTLLTFGFVKSKCDPSLLVHSHNGAVTYVLIYVDDILITGSAPHVIQ 1137

Query: 229  QLITKLDSVFSLKQLGDLDYFLGIEVKRTFNGNLLLSQGKYVRDLLQRAEMDGCKSITTP 50
             LI KL+  F+LKQLG LDYFLGIEV     G LLL+Q KY+RDLL +A+M+    I +P
Sbjct: 1138 DLIHKLNVHFALKQLGQLDYFLGIEVHSLSTGALLLTQTKYIRDLLCKAKMENSNPIGSP 1197

Query: 49   LPAAVKLSKAGADFF 5
            + +  +LSK G D F
Sbjct: 1198 MVSTCRLSKIGTDVF 1212



 Score = 67.4 bits (163), Expect(2) = 6e-50
 Identities = 33/62 (53%), Positives = 43/62 (69%), Gaps = 14/62 (22%)
 Frame = -1

Query: 540  VRIILTIALTNNWPLKQVDVNNVFLNGYLDEDVYMTQ--------------LNKAIYGLK 403
            +RIILT+A+TN WP++Q+DVNN FLNG L E+VYM Q              L+K++YGLK
Sbjct: 1020 IRIILTLAVTNKWPVQQIDVNNAFLNGVLQEEVYMHQPAGFENADRSLVCKLHKSLYGLK 1079

Query: 402  QA 397
            QA
Sbjct: 1080 QA 1081


>gb|PNX93258.1| histone deacetylase, partial [Trifolium pratense]
          Length = 1438

 Score =  159 bits (402), Expect(2) = 1e-49
 Identities = 73/133 (54%), Positives = 100/133 (75%)
 Frame = -3

Query: 409  VKTSPRAWYDRLTKTLITFGFQQCRCDPSLLIFNKNGCCIYMLIYVDDIILTGSSPTMIQ 230
            +K +PRAWY+RLT+TL+  GF   +CDPSLL+ ++ G C Y+LIYVDDI++TGSS  +I+
Sbjct: 1082 LKQAPRAWYERLTQTLVQMGFSASKCDPSLLVHHQQGACTYVLIYVDDILITGSSSQLIE 1141

Query: 229  QLITKLDSVFSLKQLGDLDYFLGIEVKRTFNGNLLLSQGKYVRDLLQRAEMDGCKSITTP 50
             LI KL+  F+LKQLG++DYFLGIEV    +G LLL+Q KY++DLL +  MD CK I +P
Sbjct: 1142 DLIHKLNIQFALKQLGEIDYFLGIEVHHMSSGALLLNQSKYIKDLLVKTNMDNCKPIGSP 1201

Query: 49   LPAAVKLSKAGAD 11
            + +  +LSK G D
Sbjct: 1202 MVSTCRLSKFGTD 1214



 Score = 65.5 bits (158), Expect(2) = 1e-49
 Identities = 33/62 (53%), Positives = 42/62 (67%), Gaps = 14/62 (22%)
 Frame = -1

Query: 540  VRIILTIALTNNWPLKQVDVNNVFLNGYLDEDVYMTQ--------------LNKAIYGLK 403
            VRIILT+A+T  W +KQ+D+NN FLNG L E+VYMTQ              L+K++YGLK
Sbjct: 1024 VRIILTLAVTYKWSVKQIDINNAFLNGLLQEEVYMTQPTGFESSDKSLVCKLHKSLYGLK 1083

Query: 402  QA 397
            QA
Sbjct: 1084 QA 1085


>gb|PNY12955.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Trifolium pratense]
          Length = 535

 Score =  159 bits (402), Expect(2) = 1e-49
 Identities = 75/133 (56%), Positives = 101/133 (75%)
 Frame = -3

Query: 409 VKTSPRAWYDRLTKTLITFGFQQCRCDPSLLIFNKNGCCIYMLIYVDDIILTGSSPTMIQ 230
           +K +PRAWY+RLT+ L+  GF   +CDPSLLI  + G C Y+LIYVDDI++TGS+P +I+
Sbjct: 169 LKQAPRAWYERLTQALLQMGFVTSKCDPSLLIHYQQGACTYVLIYVDDILITGSAPHLIK 228

Query: 229 QLITKLDSVFSLKQLGDLDYFLGIEVKRTFNGNLLLSQGKYVRDLLQRAEMDGCKSITTP 50
            LI KL+S F+LKQLG++DYFLGIEV    +G LLL+Q KY+RDLL R  M+ CK I +P
Sbjct: 229 DLIHKLNSQFALKQLGEVDYFLGIEVHHMPSGGLLLNQSKYIRDLLCRTNMENCKPIGSP 288

Query: 49  LPAAVKLSKAGAD 11
           + ++ +LSK G D
Sbjct: 289 MVSSCRLSKFGTD 301



 Score = 65.5 bits (158), Expect(2) = 1e-49
 Identities = 31/62 (50%), Positives = 43/62 (69%), Gaps = 14/62 (22%)
 Frame = -1

Query: 540 VRIILTIALTNNWPLKQVDVNNVFLNGYLDEDVYMTQ--------------LNKAIYGLK 403
           +R+ILT+A+T  WP++Q+DVNN FLNG+L E+VYM Q              L+K++YGLK
Sbjct: 111 IRVILTLAVTYKWPVQQIDVNNAFLNGWLQEEVYMKQPAGFESSDKSLVCKLHKSLYGLK 170

Query: 402 QA 397
           QA
Sbjct: 171 QA 172


>gb|PNX94499.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 1434

 Score =  160 bits (405), Expect(2) = 1e-49
 Identities = 74/133 (55%), Positives = 100/133 (75%)
 Frame = -3

Query: 409  VKTSPRAWYDRLTKTLITFGFQQCRCDPSLLIFNKNGCCIYMLIYVDDIILTGSSPTMIQ 230
            +K +PRAWY+RLT+ L+  GF   +CDPSLL+ ++ G C Y+LIYVDDI++TGS+P +IQ
Sbjct: 1128 LKQAPRAWYERLTQALLQLGFVASKCDPSLLVHHQQGACTYVLIYVDDILITGSAPHLIQ 1187

Query: 229  QLITKLDSVFSLKQLGDLDYFLGIEVKRTFNGNLLLSQGKYVRDLLQRAEMDGCKSITTP 50
             +I KL+  F+LKQLG++DYFLGIEV    +G LLL+Q KY+RDLL R  MD CK I +P
Sbjct: 1188 DVIHKLNIQFALKQLGEVDYFLGIEVHHMPSGGLLLNQSKYIRDLLSRTNMDNCKPIGSP 1247

Query: 49   LPAAVKLSKAGAD 11
            + +  +LSK G D
Sbjct: 1248 MVSTCRLSKFGTD 1260



 Score = 63.9 bits (154), Expect(2) = 1e-49
 Identities = 32/62 (51%), Positives = 42/62 (67%), Gaps = 14/62 (22%)
 Frame = -1

Query: 540  VRIILTIALTNNWPLKQVDVNNVFLNGYLDEDVYMTQ--------------LNKAIYGLK 403
            +RIILT+A+T  W ++Q+DVNN FLNG L E+VYMTQ              L+K++YGLK
Sbjct: 1070 IRIILTLAVTYKWTVQQIDVNNAFLNGVLQEEVYMTQPVGFEASDRSLVCKLHKSLYGLK 1129

Query: 402  QA 397
            QA
Sbjct: 1130 QA 1131


>gb|PNX77046.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 515

 Score =  158 bits (399), Expect(2) = 1e-49
 Identities = 71/133 (53%), Positives = 102/133 (76%)
 Frame = -3

Query: 409 VKTSPRAWYDRLTKTLITFGFQQCRCDPSLLIFNKNGCCIYMLIYVDDIILTGSSPTMIQ 230
           +K +PRAWY+RLT+TL+  GF   +CDPSL++ ++ G C Y+LIYVDDI++TGS+P +IQ
Sbjct: 242 LKQAPRAWYERLTQTLLQMGFIASKCDPSLMVLHQQGACTYVLIYVDDILITGSAPHLIQ 301

Query: 229 QLITKLDSVFSLKQLGDLDYFLGIEVKRTFNGNLLLSQGKYVRDLLQRAEMDGCKSITTP 50
            +I KL+   +LKQLG++DYFLGIEV +T +G L+L+Q KY+RDLL +  MD CK I +P
Sbjct: 302 DVIQKLNFKLALKQLGEVDYFLGIEVHKTASGGLILNQSKYIRDLLCKTTMDNCKPIGSP 361

Query: 49  LPAAVKLSKAGAD 11
           +  + +LS+ G D
Sbjct: 362 MVNSCRLSRFGTD 374



 Score = 66.2 bits (160), Expect(2) = 1e-49
 Identities = 32/62 (51%), Positives = 43/62 (69%), Gaps = 14/62 (22%)
 Frame = -1

Query: 540 VRIILTIALTNNWPLKQVDVNNVFLNGYLDEDVYMTQ--------------LNKAIYGLK 403
           +RIILT+A+T  WP++Q+D+NN FLNG L E+VYMTQ              L+K++YGLK
Sbjct: 184 IRIILTLAVTYKWPVQQIDINNAFLNGILHEEVYMTQPTGFESSDKSLVCKLHKSLYGLK 243

Query: 402 QA 397
           QA
Sbjct: 244 QA 245


>gb|PNX84939.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 499

 Score =  158 bits (399), Expect(2) = 1e-49
 Identities = 71/133 (53%), Positives = 102/133 (76%)
 Frame = -3

Query: 409 VKTSPRAWYDRLTKTLITFGFQQCRCDPSLLIFNKNGCCIYMLIYVDDIILTGSSPTMIQ 230
           +K +PRAWY+RLT+TL+  GF   +CDPSL++ ++ G C Y+LIYVDDI++TGS+P +IQ
Sbjct: 226 LKQAPRAWYERLTQTLLQMGFIASKCDPSLMVLHQQGACTYVLIYVDDILITGSAPHLIQ 285

Query: 229 QLITKLDSVFSLKQLGDLDYFLGIEVKRTFNGNLLLSQGKYVRDLLQRAEMDGCKSITTP 50
            +I KL+   +LKQLG++DYFLGIEV +T +G L+L+Q KY+RDLL +  MD CK I +P
Sbjct: 286 DVIQKLNFKLALKQLGEVDYFLGIEVHKTASGGLILNQSKYIRDLLCKTTMDNCKPIGSP 345

Query: 49  LPAAVKLSKAGAD 11
           +  + +LS+ G D
Sbjct: 346 MVNSCRLSRFGTD 358



 Score = 66.2 bits (160), Expect(2) = 1e-49
 Identities = 32/62 (51%), Positives = 43/62 (69%), Gaps = 14/62 (22%)
 Frame = -1

Query: 540 VRIILTIALTNNWPLKQVDVNNVFLNGYLDEDVYMTQ--------------LNKAIYGLK 403
           +RIILT+A+T  WP++Q+D+NN FLNG L E+VYMTQ              L+K++YGLK
Sbjct: 168 IRIILTLAVTYKWPVQQIDINNAFLNGILHEEVYMTQPTGFESSDKSLVCKLHKSLYGLK 227

Query: 402 QA 397
           QA
Sbjct: 228 QA 229


>gb|PNX77250.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Trifolium pratense]
          Length = 499

 Score =  158 bits (399), Expect(2) = 1e-49
 Identities = 71/133 (53%), Positives = 102/133 (76%)
 Frame = -3

Query: 409 VKTSPRAWYDRLTKTLITFGFQQCRCDPSLLIFNKNGCCIYMLIYVDDIILTGSSPTMIQ 230
           +K +PRAWY+RLT+TL+  GF   +CDPSL++ ++ G C Y+LIYVDDI++TGS+P +IQ
Sbjct: 133 LKQAPRAWYERLTQTLLQMGFIASKCDPSLMVLHQQGACTYVLIYVDDILITGSAPHLIQ 192

Query: 229 QLITKLDSVFSLKQLGDLDYFLGIEVKRTFNGNLLLSQGKYVRDLLQRAEMDGCKSITTP 50
            +I KL+   +LKQLG++DYFLGIEV +T +G L+L+Q KY+RDLL +  MD CK I +P
Sbjct: 193 DVIQKLNFKLALKQLGEVDYFLGIEVHKTASGGLILNQSKYIRDLLCKTTMDNCKPIGSP 252

Query: 49  LPAAVKLSKAGAD 11
           +  + +LS+ G D
Sbjct: 253 MVNSCRLSRFGTD 265



 Score = 66.2 bits (160), Expect(2) = 1e-49
 Identities = 32/62 (51%), Positives = 43/62 (69%), Gaps = 14/62 (22%)
 Frame = -1

Query: 540 VRIILTIALTNNWPLKQVDVNNVFLNGYLDEDVYMTQ--------------LNKAIYGLK 403
           +RIILT+A+T  WP++Q+D+NN FLNG L E+VYMTQ              L+K++YGLK
Sbjct: 75  IRIILTLAVTYKWPVQQIDINNAFLNGILHEEVYMTQPTGFESSDKSLVCKLHKSLYGLK 134

Query: 402 QA 397
           QA
Sbjct: 135 QA 136