BLASTX nr result
ID: Astragalus22_contig00013906
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Astragalus22_contig00013906
(2736 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|GAU30089.1| hypothetical protein TSUD_392450 [Trifolium subt... 797 0.0
gb|PNY17392.1| Ty3/gypsy retrotransposon protein [Trifolium prat... 788 0.0
gb|PNX94328.1| Ty3/gypsy retrotransposon protein, partial [Trifo... 781 0.0
dbj|GAU36702.1| hypothetical protein TSUD_16140 [Trifolium subte... 776 0.0
gb|PNX92763.1| Ty3/gypsy retrotransposon protein [Trifolium prat... 677 0.0
dbj|GAU45976.1| hypothetical protein TSUD_401160 [Trifolium subt... 724 0.0
gb|PNX92353.1| Ty3/gypsy retrotransposon protein [Trifolium prat... 645 0.0
dbj|GAU51717.1| hypothetical protein TSUD_415230, partial [Trifo... 566 0.0
ref|XP_014624262.1| PREDICTED: uncharacterized protein LOC106796... 635 0.0
gb|PNX92970.1| Ty3/gypsy retrotransposon protein, partial [Trifo... 633 0.0
gb|KYP49943.1| Transposon Ty3-I Gag-Pol polyprotein [Cajanus cajan] 643 0.0
dbj|GAU18876.1| hypothetical protein TSUD_228660 [Trifolium subt... 787 0.0
dbj|GAU27665.1| hypothetical protein TSUD_126110 [Trifolium subt... 780 0.0
dbj|GAU45231.1| hypothetical protein TSUD_138030 [Trifolium subt... 659 0.0
gb|KYP55632.1| Transposon Ty3-I Gag-Pol polyprotein [Cajanus cajan] 608 0.0
gb|PNX91810.1| transposon Ty3 gag-pol polyprotein [Trifolium pra... 592 0.0
gb|PNY17453.1| Ty3/gypsy retrotransposon protein [Trifolium prat... 589 0.0
dbj|GAU25204.1| hypothetical protein TSUD_151040 [Trifolium subt... 592 0.0
gb|AAO23078.1| polyprotein [Glycine max] 580 0.0
gb|PNY17337.1| retrotransposon-related protein [Trifolium pratense] 569 0.0
>dbj|GAU30089.1| hypothetical protein TSUD_392450 [Trifolium subterraneum]
Length = 1853
Score = 797 bits (2058), Expect(2) = 0.0
Identities = 385/542 (71%), Positives = 440/542 (81%)
Frame = -2
Query: 2735 NAITIKDRFPIPAVDELLDELYGTTFFSKLDLRSGYHQIRMHSGDISKTAFRTHQGHYEF 2556
N IT+KDRFPIPA+DELLDELYGT +FSKLDLR+GYHQIRM DI KTAFRTH GHYEF
Sbjct: 631 NTITVKDRFPIPAIDELLDELYGTNYFSKLDLRAGYHQIRMEPHDIHKTAFRTHLGHYEF 690
Query: 2555 LVMPFGLCNAPSTFQATMNILFQPYLRQFVIVFFYDILVFSKSLQDHVYHLSIVFTVLRD 2376
LVMPFGLCNAPSTFQ+TMN++FQPYLR FVIVFF DILV+S++ +H+ HL VF L +
Sbjct: 691 LVMPFGLCNAPSTFQSTMNVIFQPYLRHFVIVFFDDILVYSRTKAEHLKHLETVFQCLLE 750
Query: 2375 NQFFLKRSKCSFGQSSISYLGHIVSPHGVAPDPEKIEAMTNWPVPTTLKQLRGFLGLTGF 2196
N F LK SKCSF Q+SISYLGHIVS GV PDPEKIEAM NWP PTTLKQLRGFLGLTGF
Sbjct: 751 NCFILKLSKCSFAQNSISYLGHIVSAEGVGPDPEKIEAMVNWPPPTTLKQLRGFLGLTGF 810
Query: 2195 YRKFVSHYASIAAPLTELLKKDCFQWSDTAQSAFMALKDAMTRAPVLRLPNFAEDFCIDT 2016
YRKFV YA IA PLTELLKKD FQWS+ AQ AF LK AMT+APVL LPNF EDF I+T
Sbjct: 811 YRKFVKDYAIIAQPLTELLKKDAFQWSEQAQVAFDHLKAAMTKAPVLALPNFEEDFMIET 870
Query: 2015 DASGVGMDAVLSQGGHPICYFSNKFCPKLLSASTYVRDLCAITSAVKKWRPYLLGRKFTT 1836
DASG+GM AVL Q HPICYFS KFCPKL++AS YVR+LCAITSAVKKWR YLLGRKF
Sbjct: 871 DASGIGMGAVLIQNNHPICYFSQKFCPKLMNASAYVRELCAITSAVKKWRTYLLGRKFVV 930
Query: 1835 HTDQKSLRELMTQVVQTPEQQFYLAKLLGYSYEIVYKPGKQNSVADALSRIHEPPAICLG 1656
HTDQ+SLRELMTQV+QTPEQQFYLAKLLGYSYEI YKPG QN VADALSR+HE +
Sbjct: 931 HTDQRSLRELMTQVIQTPEQQFYLAKLLGYSYEIKYKPGTQNRVADALSRVHENFPSVMA 990
Query: 1655 LTVPHCVFYDKITAVCQSDPNFIHLRSQVQQHPERYPDFQVINSMLFFKGKLYIPSDSPV 1476
+T+PH F +K+ A D L S+V P YP+F++I +L+FKG+LYIP+ S
Sbjct: 991 ITIPHWKFLEKLQAEINQDSEVKDLMSKVANDPNSYPNFKIIKGLLYFKGRLYIPASSSF 1050
Query: 1475 KFTLMEEFHSSLVGGHSGITKTLGRLKDNVYWEGMSKDVADFVKACIICQQTKIPAHLPY 1296
K L+EE H++ VGGHSGI +T GR+K+N YW G+ +DV ++V +C CQQTK P H PY
Sbjct: 1051 KNILLEEIHATPVGGHSGIQRTYGRMKENFYWVGLKQDVVNYVNSCHTCQQTKDPTHAPY 1110
Query: 1295 GLLQPLPIPTNIWEDISLDCIVGLPSFQNHTVILVIVDRLSKASHFGMLPSNFTAVKVAE 1116
GLLQPLPIP +IWEDIS+D IVGLPSFQ++TVI V+VDR SKA+HFGMLP+ FTAVKVAE
Sbjct: 1111 GLLQPLPIPKHIWEDISMDFIVGLPSFQHYTVIFVVVDRFSKAAHFGMLPTGFTAVKVAE 1170
Query: 1115 LF 1110
LF
Sbjct: 1171 LF 1172
Score = 417 bits (1072), Expect(2) = 0.0
Identities = 196/297 (65%), Positives = 240/297 (80%), Gaps = 3/297 (1%)
Frame = -1
Query: 1104 MVSSVHGMPKSIVSDRDPIFMSKFWQELFRLSGTKLRMSSAYHPQSDGQTEIVNKALQQY 925
MV +HGMP SIVSDRDPIF+SKFWQELF LSGTKLRMS+AYHPQSDGQTE+VNK LQQY
Sbjct: 1175 MVCKLHGMPHSIVSDRDPIFLSKFWQELFHLSGTKLRMSTAYHPQSDGQTEVVNKTLQQY 1234
Query: 924 LRCFVHDQPRTWGKFLHWAEWHYNTSIHSAIGMSPYQAVFGKPPPTLQQYISGSSNIEAV 745
LRCFVHDQP+ WGK++HWAEWHYNT+IH++ G SP+Q V+GKPPP+L QY++G+S +EA+
Sbjct: 1235 LRCFVHDQPKRWGKYIHWAEWHYNTAIHTSTGYSPFQVVYGKPPPSLPQYLAGTSQLEAL 1294
Query: 744 NSELLNRDTILEILRKKLLKAQETMKLHADKRRLPHPFKVGDLVFVKLRPHRQISVT*YR 565
+SEL NR+ IL+ L+KKLLKAQ+ MK++AD+ R PH FK GDLV+VKLRP+RQ S+ R
Sbjct: 1295 DSELSNREIILQNLKKKLLKAQQNMKIYADQHRSPHTFKTGDLVYVKLRPYRQTSLPAQR 1354
Query: 564 VQKLAKR-YGPYKILRAIGTVAFELQLPPGSKIHPIFHASQLKPCLGTTVDTLELPPKAV 388
KL+KR YGP+K+LR IG VAFEL+LPP SKIHP+FH S+LKPC L LPP AV
Sbjct: 1355 THKLSKRFYGPFKLLRQIGDVAFELELPPESKIHPVFHVSKLKPCHDPASKPLVLPPDAV 1414
Query: 387 DNMPILQPLAIL--AQQTVNNKRQLLVQWTGLLPEDATWEDEEAFKLSYPALNLEDK 223
DN P++QPLA+L ++ Q+L+QW GL PEDATWE E K +YP L+LEDK
Sbjct: 1415 DNSPMVQPLAVLDWKEEPGQTSPQVLIQWAGLYPEDATWESFEEIKKAYPHLHLEDK 1471
>gb|PNY17392.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
Length = 1510
Score = 788 bits (2036), Expect(2) = 0.0
Identities = 377/544 (69%), Positives = 445/544 (81%)
Frame = -2
Query: 2735 NAITIKDRFPIPAVDELLDELYGTTFFSKLDLRSGYHQIRMHSGDISKTAFRTHQGHYEF 2556
N +T KDRFPIPA+DELLDELYGT +FSKLDLRSGYHQIRM DI KTAFRTH GHYEF
Sbjct: 611 NTLTSKDRFPIPAIDELLDELYGTQWFSKLDLRSGYHQIRMAQEDIHKTAFRTHHGHYEF 670
Query: 2555 LVMPFGLCNAPSTFQATMNILFQPYLRQFVIVFFYDILVFSKSLQDHVYHLSIVFTVLRD 2376
LVMPFGLCNAPSTFQ+TMN++F+PYLR+FVIVFF DILV+S +L H+ HL +VF L
Sbjct: 671 LVMPFGLCNAPSTFQSTMNLIFEPYLRRFVIVFFDDILVYSPTLDSHLEHLKVVFQCLLT 730
Query: 2375 NQFFLKRSKCSFGQSSISYLGHIVSPHGVAPDPEKIEAMTNWPVPTTLKQLRGFLGLTGF 2196
++F LK+SKCSF QSSI YLGHIVS GV PDP KIEAM +WPVP+ +KQLRGFLGLTGF
Sbjct: 731 HEFCLKQSKCSFAQSSIDYLGHIVSAEGVGPDPTKIEAMVSWPVPSNVKQLRGFLGLTGF 790
Query: 2195 YRKFVSHYASIAAPLTELLKKDCFQWSDTAQSAFMALKDAMTRAPVLRLPNFAEDFCIDT 2016
YRKF+ YASIAAPLT LLK+D F W+D AQ AF LK AM+ APVL LPNF + F ++T
Sbjct: 791 YRKFICKYASIAAPLTALLKRDAFIWTDAAQQAFDMLKRAMSEAPVLSLPNFEDQFILET 850
Query: 2015 DASGVGMDAVLSQGGHPICYFSNKFCPKLLSASTYVRDLCAITSAVKKWRPYLLGRKFTT 1836
DASG+GM AVL Q GHPICYFS +FCP++L ASTYVR+LCAIT+AVKKWR YLLG F
Sbjct: 851 DASGMGMGAVLIQKGHPICYFSKQFCPRMLVASTYVRELCAITTAVKKWRTYLLGNTFII 910
Query: 1835 HTDQKSLRELMTQVVQTPEQQFYLAKLLGYSYEIVYKPGKQNSVADALSRIHEPPAICLG 1656
+TDQ+SLRELMTQV+QTPEQQFYLAKLLGYSYEI+YKPG QN VADALSR+H CL
Sbjct: 911 YTDQRSLRELMTQVIQTPEQQFYLAKLLGYSYEIMYKPGPQNRVADALSRVH-----CLA 965
Query: 1655 LTVPHCVFYDKITAVCQSDPNFIHLRSQVQQHPERYPDFQVINSMLFFKGKLYIPSDSPV 1476
+TVPH F + D F L + V+++P+ + F++++ +LFFKGKL+IPS+SP+
Sbjct: 966 ITVPHLDFLHTLKEQLVQDDEFQQLLTNVKENPDAHMGFEILDDLLFFKGKLFIPSNSPL 1025
Query: 1475 KFTLMEEFHSSLVGGHSGITKTLGRLKDNVYWEGMSKDVADFVKACIICQQTKIPAHLPY 1296
K TL+EEFHSS +GGHSGI +T GRL++NV+W GM DV FVK+C ICQQTK P H PY
Sbjct: 1026 KVTLLEEFHSSTIGGHSGIHRTFGRLQENVFWHGMRNDVTQFVKSCAICQQTKPPTHSPY 1085
Query: 1295 GLLQPLPIPTNIWEDISLDCIVGLPSFQNHTVILVIVDRLSKASHFGMLPSNFTAVKVAE 1116
GLLQPLPIP +WEDISLD +VGLPSFQ HTV+LV+VDRLSKA+HFG+LP++FTA KVA+
Sbjct: 1086 GLLQPLPIPDKVWEDISLDFVVGLPSFQTHTVVLVVVDRLSKAAHFGLLPTHFTAAKVAD 1145
Query: 1115 LFAK 1104
LFAK
Sbjct: 1146 LFAK 1149
Score = 413 bits (1061), Expect(2) = 0.0
Identities = 207/355 (58%), Positives = 259/355 (72%), Gaps = 8/355 (2%)
Frame = -1
Query: 1104 MVSSVHGMPKSIVSDRDPIFMSKFWQELFRLSGTKLRMSSAYHPQSDGQTEIVNKALQQY 925
MV +HGMP+SIVSDRDPIF+S FWQELFRLSGTKLRMS+AYHPQSDGQTE VNK LQQY
Sbjct: 1150 MVCKLHGMPRSIVSDRDPIFLSHFWQELFRLSGTKLRMSTAYHPQSDGQTENVNKVLQQY 1209
Query: 924 LRCFVHDQPRTWGKFLHWAEWHYNTSIHSAIGMSPYQAVFGKPPPTLQQYISGSSNIEAV 745
LRCFVHD+P+ WG +LHWAEWHYNT+IH++ G+SPY+ V+G+PPPTL Y+ GSS ++AV
Sbjct: 1210 LRCFVHDKPKQWGHYLHWAEWHYNTAIHTSTGISPYEVVYGRPPPTLADYVPGSSKLQAV 1269
Query: 744 NSELLNRDTILEILRKKLLKAQETMKLHADKRRLPHPFKVGDLVFVKLRPHRQISVT*YR 565
++ L RD ++E+L+ KLLKAQ TMK +AD +R+PH FKVGD VFVKLRP+RQ SV R
Sbjct: 1270 DATLTERDIVIEVLKNKLLKAQNTMKEYADLKRIPHQFKVGDWVFVKLRPYRQNSVLGRR 1329
Query: 564 VQKLAKR-YGPYKILRAIGTVAFELQLPPGSKIHPIFHASQLKPCLGTTVDTLELPPKAV 388
KL+KR YGP+K++RAIG VAFEL+LP S+IHP+FH SQLKPC TV L LPP+ V
Sbjct: 1330 FHKLSKRFYGPFKLVRAIGEVAFELELPDTSRIHPVFHVSQLKPCFDNTVVPLALPPETV 1389
Query: 387 DNMPILQPLAILAQQT--VNNKRQLLVQWTGLLPEDATWEDEEAFKLSYPALNLEDKVLS 214
DN P + P+AIL +T N +++ LVQW GL PEDATWE+ + K SYP + ED V
Sbjct: 1390 DNQPCITPIAILDWRTNEENGQQEALVQWEGLFPEDATWENYQDLKNSYPTFDHEDMVSL 1449
Query: 213 QGEGDV-----TGPAEEIEDYXXXXXXXXXXEVQTPKGRAKRNRTKPKWFNDHVM 64
+ DV G EEI++ EV + + KR +PK +D V+
Sbjct: 1450 DEQRDVMNQNDMGLDEEIQE---NWAQENEEEVLGHQPKVKRKIVRPKHLDDFVI 1501
>gb|PNX94328.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
Length = 1474
Score = 781 bits (2016), Expect(2) = 0.0
Identities = 376/544 (69%), Positives = 437/544 (80%)
Frame = -2
Query: 2735 NAITIKDRFPIPAVDELLDELYGTTFFSKLDLRSGYHQIRMHSGDISKTAFRTHQGHYEF 2556
NA+T KDRFPIPA+DELLDELYGT +F+KLDLRSGYHQIRM DI KTAFRTHQGHYEF
Sbjct: 605 NAVTSKDRFPIPAIDELLDELYGTCWFTKLDLRSGYHQIRMAQEDIHKTAFRTHQGHYEF 664
Query: 2555 LVMPFGLCNAPSTFQATMNILFQPYLRQFVIVFFYDILVFSKSLQDHVYHLSIVFTVLRD 2376
+VMPFGLCNAPSTFQ+TMN++F+P+LR+FVIVFF DILV+S +L H+ HL V L D
Sbjct: 665 MVMPFGLCNAPSTFQSTMNLIFEPFLRRFVIVFFDDILVYSPTLDTHLQHLETVLQCLLD 724
Query: 2375 NQFFLKRSKCSFGQSSISYLGHIVSPHGVAPDPEKIEAMTNWPVPTTLKQLRGFLGLTGF 2196
N+F LK SKCSF Q+SI YLGHIVS GV PDP KI AM NWP PT +KQLRGFLGLTGF
Sbjct: 725 NEFCLKASKCSFAQTSIDYLGHIVSAEGVGPDPSKISAMVNWPPPTNVKQLRGFLGLTGF 784
Query: 2195 YRKFVSHYASIAAPLTELLKKDCFQWSDTAQSAFMALKDAMTRAPVLRLPNFAEDFCIDT 2016
YRKFV +YAS+AAPLT LLK+D F+W++ AQ AF LK AMT PVL LPNF E F ++T
Sbjct: 785 YRKFVRNYASLAAPLTSLLKRDAFEWTERAQQAFEGLKRAMTEVPVLGLPNFDEKFILET 844
Query: 2015 DASGVGMDAVLSQGGHPICYFSNKFCPKLLSASTYVRDLCAITSAVKKWRPYLLGRKFTT 1836
DASGVGM AVL Q GHPICYFS +FCP++L ASTYVR+LCAIT+AVKKWR YLLG F
Sbjct: 845 DASGVGMGAVLMQSGHPICYFSKQFCPRMLQASTYVRELCAITTAVKKWRTYLLGNTFAI 904
Query: 1835 HTDQKSLRELMTQVVQTPEQQFYLAKLLGYSYEIVYKPGKQNSVADALSRIHEPPAICLG 1656
+TDQ+SLRELMTQV+QTPEQQFYLAKLLGYSYEI+YKPG QN VADALSR+H CL
Sbjct: 905 YTDQRSLRELMTQVIQTPEQQFYLAKLLGYSYEIIYKPGPQNRVADALSRVH-----CLV 959
Query: 1655 LTVPHCVFYDKITAVCQSDPNFIHLRSQVQQHPERYPDFQVINSMLFFKGKLYIPSDSPV 1476
LT+P F D F +QVQ P Y +F+++N +LFFKGKL+IP+ SP+
Sbjct: 960 LTIPQMDFLTTFKQQLAVDTEFQQFLAQVQAKPAEYSEFEIMNGLLFFKGKLFIPATSPL 1019
Query: 1475 KFTLMEEFHSSLVGGHSGITKTLGRLKDNVYWEGMSKDVADFVKACIICQQTKIPAHLPY 1296
K TL+EEFH+S +GGHSGI +T GRL++NV+W GM DV FVK+C ICQQTK H PY
Sbjct: 1020 KLTLLEEFHASTIGGHSGIHRTYGRLQENVFWYGMRNDVTHFVKSCSICQQTKPANHSPY 1079
Query: 1295 GLLQPLPIPTNIWEDISLDCIVGLPSFQNHTVILVIVDRLSKASHFGMLPSNFTAVKVAE 1116
GLLQPLPIP +WEDISLD IVGLPS Q+HTVI V+VDRLSKA+HFG LP++FTA+KVA+
Sbjct: 1080 GLLQPLPIPEKVWEDISLDFIVGLPSVQSHTVIFVVVDRLSKAAHFGSLPTHFTAIKVAD 1139
Query: 1115 LFAK 1104
LFAK
Sbjct: 1140 LFAK 1143
Score = 409 bits (1052), Expect(2) = 0.0
Identities = 195/316 (61%), Positives = 248/316 (78%), Gaps = 4/316 (1%)
Frame = -1
Query: 1104 MVSSVHGMPKSIVSDRDPIFMSKFWQELFRLSGTKLRMSSAYHPQSDGQTEIVNKALQQY 925
MV +HGMP+SIVSDRDPIF+S+FWQELF+LSGTKLRMS+AYHPQSDGQTEIVNK LQQY
Sbjct: 1144 MVCKLHGMPRSIVSDRDPIFLSQFWQELFKLSGTKLRMSTAYHPQSDGQTEIVNKVLQQY 1203
Query: 924 LRCFVHDQPRTWGKFLHWAEWHYNTSIHSAIGMSPYQAVFGKPPPTLQQYISGSSNIEAV 745
LRCFVHD+P W +FLHWAEWHYNT+IH++ G+SP+Q V+G+PPP L YI GSS+I+A+
Sbjct: 1204 LRCFVHDKPNQWEQFLHWAEWHYNTAIHTSTGLSPFQIVYGRPPPALADYIPGSSSIQAI 1263
Query: 744 NSELLNRDTILEILRKKLLKAQETMKLHADKRRLPHPFKVGDLVFVKLRPHRQISVT*YR 565
++ L++RD +L+ L+ KL KAQ MK AD+ R+PH FKVGDLVFVKLRP+RQ SV R
Sbjct: 1264 DATLIDRDMMLQNLKNKLQKAQAIMKEQADQHRIPHKFKVGDLVFVKLRPYRQNSVMGRR 1323
Query: 564 VQKLAKR-YGPYKILRAIGTVAFELQLPPGSKIHPIFHASQLKPCLGTTVDTLELPPKAV 388
+ KL+KR YGP+K+++AIG VAFEL+LPP S+IHP+FH SQLKPC T + L+LP +A+
Sbjct: 1324 IHKLSKRFYGPFKLIKAIGDVAFELELPPTSRIHPVFHVSQLKPCFDETSEPLDLPLEAL 1383
Query: 387 DNMPILQPLAIL--AQQTVNNKRQLLVQWTGLLPEDATWEDEEAFKLSYPALNLEDKVLS 214
N P+++PLA+L Q ++L+QW GL PEDATWE + + +YP +LEDKV
Sbjct: 1384 GNQPVIKPLAVLDWKQNESGEFVEVLIQWEGLFPEDATWEKYQEIQSTYPTFDLEDKVNF 1443
Query: 213 QGEGDVTGPAE-EIED 169
G DVT E +IED
Sbjct: 1444 DGTWDVTNQVETDIED 1459
>dbj|GAU36702.1| hypothetical protein TSUD_16140 [Trifolium subterraneum]
Length = 1358
Score = 776 bits (2005), Expect(2) = 0.0
Identities = 374/544 (68%), Positives = 439/544 (80%)
Frame = -2
Query: 2735 NAITIKDRFPIPAVDELLDELYGTTFFSKLDLRSGYHQIRMHSGDISKTAFRTHQGHYEF 2556
NA+T KDRFPIPA+DELLDELYGT +FSKLDLRSGYHQIRM GDI KTAFRTHQGHYEF
Sbjct: 578 NAVTSKDRFPIPAIDELLDELYGTKWFSKLDLRSGYHQIRMARGDIYKTAFRTHQGHYEF 637
Query: 2555 LVMPFGLCNAPSTFQATMNILFQPYLRQFVIVFFYDILVFSKSLQDHVYHLSIVFTVLRD 2376
LVMPFGLCNAPSTFQ+TMN++F+P+LR+FVIVFF DILV+S +L H+ HL +VF L +
Sbjct: 638 LVMPFGLCNAPSTFQSTMNLIFEPFLRRFVIVFFDDILVYSPTLDSHLQHLELVFQCLLE 697
Query: 2375 NQFFLKRSKCSFGQSSISYLGHIVSPHGVAPDPEKIEAMTNWPVPTTLKQLRGFLGLTGF 2196
N F LK SKCSF Q+SI YLGHIVS GV PDP KI AM +WP P +KQLRGFLGLTGF
Sbjct: 698 NDFRLKASKCSFAQTSIEYLGHIVSDEGVGPDPSKISAMISWPAPVNIKQLRGFLGLTGF 757
Query: 2195 YRKFVSHYASIAAPLTELLKKDCFQWSDTAQSAFMALKDAMTRAPVLRLPNFAEDFCIDT 2016
YRKFV +YAS+AAPLT LLK D F W++ AQ AF LK AM+ APVL LPNF E F ++T
Sbjct: 758 YRKFVRNYASLAAPLTALLKHDAFLWTEDAQKAFEGLKKAMSEAPVLGLPNFEEKFVLET 817
Query: 2015 DASGVGMDAVLSQGGHPICYFSNKFCPKLLSASTYVRDLCAITSAVKKWRPYLLGRKFTT 1836
DASG+GM AVL Q HPICYFS +FCP+++ ASTYVR+LCAIT+AVKKWR YLLG FT
Sbjct: 818 DASGLGMGAVLIQNNHPICYFSKQFCPRMVQASTYVRELCAITTAVKKWRTYLLGNTFTI 877
Query: 1835 HTDQKSLRELMTQVVQTPEQQFYLAKLLGYSYEIVYKPGKQNSVADALSRIHEPPAICLG 1656
TDQ+SLRELMTQV+QTPEQQFYLAKLLGYSYEIVYKPG QN +ADALSR+ CL
Sbjct: 878 FTDQRSLRELMTQVIQTPEQQFYLAKLLGYSYEIVYKPGPQNRIADALSRVQ-----CLV 932
Query: 1655 LTVPHCVFYDKITAVCQSDPNFIHLRSQVQQHPERYPDFQVINSMLFFKGKLYIPSDSPV 1476
+TVP F ++ F ++V +P Y DF+V+N +LF KGKL+IP++SP+
Sbjct: 933 ITVPQLDFLATFKQQLAAETEFQQFLARVISNPAEYSDFEVMNGLLFVKGKLFIPANSPL 992
Query: 1475 KFTLMEEFHSSLVGGHSGITKTLGRLKDNVYWEGMSKDVADFVKACIICQQTKIPAHLPY 1296
K TL+EEFHSS +GGHSGI +T GRL++NV+WEGM KDV FVK+C +CQQTK H PY
Sbjct: 993 KTTLLEEFHSSTIGGHSGIHRTFGRLQENVFWEGMRKDVTQFVKSCSVCQQTKPANHYPY 1052
Query: 1295 GLLQPLPIPTNIWEDISLDCIVGLPSFQNHTVILVIVDRLSKASHFGMLPSNFTAVKVAE 1116
GLLQPLPIP +WED+SLD IVGLPSFQ+HTVILV+VDR SKA+HFG LP++FTAV+VA+
Sbjct: 1053 GLLQPLPIPNRVWEDVSLDFIVGLPSFQSHTVILVVVDRFSKAAHFGSLPTHFTAVRVAD 1112
Query: 1115 LFAK 1104
LFAK
Sbjct: 1113 LFAK 1116
Score = 337 bits (865), Expect(2) = 0.0
Identities = 157/225 (69%), Positives = 191/225 (84%), Gaps = 1/225 (0%)
Frame = -1
Query: 1104 MVSSVHGMPKSIVSDRDPIFMSKFWQELFRLSGTKLRMSSAYHPQSDGQTEIVNKALQQY 925
M+ +HGMP+S+VSDRDPIF+S FWQELFRLSGTKLRMS+AYHPQSDGQTEIVNK LQQY
Sbjct: 1117 MICRLHGMPRSMVSDRDPIFLSHFWQELFRLSGTKLRMSTAYHPQSDGQTEIVNKVLQQY 1176
Query: 924 LRCFVHDQPRTWGKFLHWAEWHYNTSIHSAIGMSPYQAVFGKPPPTLQQYISGSSNIEAV 745
LRCFVHD+P+ WG+FLHWAEWHYNT+ H++ G+SP+Q V+G+ PP L YI GSS I+AV
Sbjct: 1177 LRCFVHDKPKHWGQFLHWAEWHYNTATHTSTGLSPFQVVYGRTPPALVDYIPGSSTIQAV 1236
Query: 744 NSELLNRDTILEILRKKLLKAQETMKLHADKRRLPHPFKVGDLVFVKLRPHRQISVT*YR 565
++ L +R+TIL++L+ KLLKAQ MK AD R+ H FKVGDLVFVKLRP+RQ SV R
Sbjct: 1237 DATLGDRETILQVLKTKLLKAQAVMKEQADMHRVHHQFKVGDLVFVKLRPYRQNSVLGRR 1296
Query: 564 VQKLAKR-YGPYKILRAIGTVAFELQLPPGSKIHPIFHASQLKPC 433
V KL+KR YGP+K+++AIG VAFEL+LPP S+IHP+FH SQLKPC
Sbjct: 1297 VHKLSKRFYGPFKLIKAIGEVAFELELPPSSRIHPVFHVSQLKPC 1341
>gb|PNX92763.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
Length = 1410
Score = 677 bits (1746), Expect(2) = 0.0
Identities = 334/558 (59%), Positives = 405/558 (72%)
Frame = -2
Query: 2735 NAITIKDRFPIPAVDELLDELYGTTFFSKLDLRSGYHQIRMHSGDISKTAFRTHQGHYEF 2556
NAITIKDRFP+P +DELLD+L G ++FSKLDL+ G+HQIRM S DI KTAFRTH GHYE+
Sbjct: 521 NAITIKDRFPMPTIDELLDDLGGASWFSKLDLQQGFHQIRMSSDDIPKTAFRTHHGHYEY 580
Query: 2555 LVMPFGLCNAPSTFQATMNILFQPYLRQFVIVFFYDILVFSKSLQDHVYHLSIVFTVLRD 2376
LVMPFGLCNAPSTFQATMN L QP+LR+F VFF DILVFS +L DH+ HL V L
Sbjct: 581 LVMPFGLCNAPSTFQATMNDLLQPFLRKFAAVFFDDILVFSPTLTDHLLHLEQVLNQLAS 640
Query: 2375 NQFFLKRSKCSFGQSSISYLGHIVSPHGVAPDPEKIEAMTNWPVPTTLKQLRGFLGLTGF 2196
F LKRSKC FGQ + YLGHI+S HG+ DP K++AM WP PT++ LRGFLGLTGF
Sbjct: 641 ADFSLKRSKCLFGQRQLEYLGHIISQHGIQADPSKLQAMVEWPTPTSITSLRGFLGLTGF 700
Query: 2195 YRKFVSHYASIAAPLTELLKKDCFQWSDTAQSAFMALKDAMTRAPVLRLPNFAEDFCIDT 2016
YRKF+ YASIA PLT LLKKD F W+D AQ+AF +LK AMT AP L +PNF+ F ++T
Sbjct: 701 YRKFIKGYASIATPLTNLLKKDSFFWNDEAQTAFDSLKKAMTEAPTLSVPNFSIPFDLET 760
Query: 2015 DASGVGMDAVLSQGGHPICYFSNKFCPKLLSASTYVRDLCAITSAVKKWRPYLLGRKFTT 1836
DASG M AVL Q HPI +FS +FCP+LL +STYVR+L AIT+AVKKWR YLLG FT
Sbjct: 761 DASGKAMGAVLMQLSHPIAFFSKQFCPRLLRSSTYVRELHAITTAVKKWRQYLLGHPFTI 820
Query: 1835 HTDQKSLRELMTQVVQTPEQQFYLAKLLGYSYEIVYKPGKQNSVADALSRIHEPPAICLG 1656
HTD KSL+EL++QV+QTPEQQ YL+KLLGY ++I YK GK N VADALSR+ P CL
Sbjct: 821 HTDHKSLKELISQVIQTPEQQVYLSKLLGYDFKIQYKSGKANVVADALSRVDSP--TCLT 878
Query: 1655 LTVPHCVFYDKITAVCQSDPNFIHLRSQVQQHPERYPDFQVINSMLFFKGKLYIPSDSPV 1476
LT+PH +F D++ Q F L QVQQ+P YP+++ +LF+K K+++ S +P
Sbjct: 879 LTMPHFIFLDELRLSLQPSTEFTTLFHQVQQNPSTYPNYKTHQGLLFYKNKIWLNSSNPF 938
Query: 1475 KFTLMEEFHSSLVGGHSGITKTLGRLKDNVYWEGMSKDVADFVKACIICQQTKIPAHLPY 1296
K L++EFH+S + GH GI KT RL +N YW+GM DV FV C+ CQ TK P
Sbjct: 939 KQRLLQEFHNSPLSGHMGIQKTYIRLHENFYWQGMRDDVKHFVSNCLTCQATKYETKKPA 998
Query: 1295 GLLQPLPIPTNIWEDISLDCIVGLPSFQNHTVILVIVDRLSKASHFGMLPSNFTAVKVAE 1116
GLLQPLP+P+ IWED+SLD I GLP TVILV+VDR SK +HFG LPS+F+A KVA
Sbjct: 999 GLLQPLPVPSAIWEDLSLDFITGLPPSHGFTVILVVVDRFSKGAHFGALPSSFSAYKVAA 1058
Query: 1115 LFAKWSVLSTVCQRVSCP 1062
LF L +C+ P
Sbjct: 1059 LF-----LDIICKHHGLP 1071
Score = 343 bits (879), Expect(2) = 0.0
Identities = 170/296 (57%), Positives = 223/296 (75%), Gaps = 6/296 (2%)
Frame = -1
Query: 1089 HGMPKSIVSDRDPIFMSKFWQELFRLSGTKLRMSSAYHPQSDGQTEIVNKALQQYLRCFV 910
HG+P+S+VSDRDPIF+S+FW+ELF+LSGTKLRMS++YHP++DGQTE++N+ L+QYLR FV
Sbjct: 1068 HGLPRSLVSDRDPIFISRFWRELFKLSGTKLRMSTSYHPETDGQTEVLNRILEQYLRSFV 1127
Query: 909 HDQPRTWGKFLHWAEWHYNTSIHSAIGMSPYQAVFGKPPPTLQQYISGSSNIEAVNSELL 730
H +P W +FL AEW YNT+ HSA G SP++ FGKPPP++ Y+ GSSN+EAV++ L
Sbjct: 1128 HSKPTHWHQFLPLAEWSYNTTSHSATGRSPFEITFGKPPPSIPSYLLGSSNVEAVDTLLT 1187
Query: 729 NRDTILEILRKKLLKAQETMKLHADKRRLPHPFKVGDLVFVKLRPHRQISVT*YRVQKLA 550
R + +L++KLLKAQETMK +AD++R + VGD V+VKLRP+RQ S+T KL+
Sbjct: 1188 TRQHTITLLQRKLLKAQETMKFYADQKRRELSYAVGDFVYVKLRPYRQQSLTGSTYSKLS 1247
Query: 549 KR-YGPYKILRAIGTVAFELQLPPGSKIHPIFHASQLKPCLG-TTVDTLELPPKAVDNMP 376
KR YGPYKI+ IG VA++L+LPP SKIHP+FH S LK G T +LPP VDN P
Sbjct: 1248 KRFYGPYKIVERIGPVAYKLELPPQSKIHPVFHCSLLKQHRGPLTAAPDDLPPSNVDNQP 1307
Query: 375 ILQPLAILAQQTVNN----KRQLLVQWTGLLPEDATWEDEEAFKLSYPALNLEDKV 220
++QPLAIL +T +N +RQ+LVQW GLLPEDATWED ++ +LEDKV
Sbjct: 1308 VIQPLAILDSRTDHNINPPQRQVLVQWLGLLPEDATWEDWNTLNSNF---HLEDKV 1360
>dbj|GAU45976.1| hypothetical protein TSUD_401160 [Trifolium subterraneum]
Length = 1273
Score = 724 bits (1868), Expect(2) = 0.0
Identities = 356/530 (67%), Positives = 408/530 (76%)
Frame = -2
Query: 2735 NAITIKDRFPIPAVDELLDELYGTTFFSKLDLRSGYHQIRMHSGDISKTAFRTHQGHYEF 2556
NAIT+KDRFPIPA+DELLDELYGTT+FSKLDLRSGYHQIRM DI+KTAFRTHQGHYEF
Sbjct: 507 NAITVKDRFPIPAIDELLDELYGTTWFSKLDLRSGYHQIRMSPNDIAKTAFRTHQGHYEF 566
Query: 2555 LVMPFGLCNAPSTFQATMNILFQPYLRQFVIVFFYDILVFSKSLQDHVYHLSIVFTVLRD 2376
LVMPFGLCNAPSTFQATMN++ +PYLR FVIVFF DIL++S S +DH++HL +VF L
Sbjct: 567 LVMPFGLCNAPSTFQATMNLILEPYLRHFVIVFFDDILIYSSSFEDHLHHLKLVFECLLT 626
Query: 2375 NQFFLKRSKCSFGQSSISYLGHIVSPHGVAPDPEKIEAMTNWPVPTTLKQLRGFLGLTGF 2196
+QFFLK +KC F Q SISYLGHI+S GV PDPEKI +MT WP P LKQLRGFLGLTGF
Sbjct: 627 HQFFLKMTKCQFAQQSISYLGHIISSCGVGPDPEKIASMTQWPSPANLKQLRGFLGLTGF 686
Query: 2195 YRKFVSHYASIAAPLTELLKKDCFQWSDTAQSAFMALKDAMTRAPVLRLPNFAEDFCIDT 2016
YRKF+ +YA+IA PLTELLKKD F WS+TAQ AF ALK AM APVL LPNF E F +DT
Sbjct: 687 YRKFIKNYATIAFPLTELLKKDAFAWSETAQEAFNALKQAMVEAPVLALPNFNEPFMLDT 746
Query: 2015 DASGVGMDAVLSQGGHPICYFSNKFCPKLLSASTYVRDLCAITSAVKKWRPYLLGRKFTT 1836
DAS +GM AVLSQGGHPICYFS KFC KLL ASTYVR+LCAIT AVKKWRPYLLGRKF
Sbjct: 747 DASRIGMGAVLSQGGHPICYFSKKFCSKLLRASTYVRELCAITEAVKKWRPYLLGRKFII 806
Query: 1835 HTDQKSLRELMTQVVQTPEQQFYLAKLLGYSYEIVYKPGKQNSVADALSRIHEPPAICLG 1656
HTDQ+SLRELMTQV+QTPEQQ+YLAKLLGYSYEIVYKPG Q+ VADALSRI A G
Sbjct: 807 HTDQRSLRELMTQVIQTPEQQYYLAKLLGYSYEIVYKPGSQSQVADALSRITNSDADFFG 866
Query: 1655 LTVPHCVFYDKITAVCQSDPNFIHLRSQVQQHPERYPDFQVINSMLFFKGKLYIPSDSPV 1476
+T+PH VF DK D + L + +Q +P Y ++V+N+++FFK KL+IP+ S
Sbjct: 867 ITIPHFVFLDKFKQEVLIDTQYQELLANIQHNPLDYAGYRVVNNLIFFKDKLFIPTASSF 926
Query: 1475 KFTLMEEFHSSLVGGHSGITKTLGRLKDNVYWEGMSKDVADFVKACIICQQTKIPAHLPY 1296
K L+E+FH++ +GGHSG KT GRL++NVYW GM KD
Sbjct: 927 KRLLLEKFHATPIGGHSGTEKTYGRLRENVYWHGMKKD---------------------- 964
Query: 1295 GLLQPLPIPTNIWEDISLDCIVGLPSFQNHTVILVIVDRLSKASHFGMLP 1146
PLP P IWEDISLD I GLPSFQ+ TVILV+VDR SKA+HF M P
Sbjct: 965 ----PLPNPKGIWEDISLDFITGLPSFQSFTVILVVVDRFSKAAHFDMDP 1010
Score = 276 bits (706), Expect(2) = 0.0
Identities = 155/334 (46%), Positives = 194/334 (58%), Gaps = 1/334 (0%)
Frame = -1
Query: 1062 DRDPIFMSKFWQELFRLSGTKLRMSSAYHPQSDGQTEIVNKALQQYLRCFVHDQPRTWGK 883
D DPIF+S FW++LF+L+GT+LRMSSAYHPQSDGQTEIVNK
Sbjct: 1007 DMDPIFISSFWKQLFKLNGTQLRMSSAYHPQSDGQTEIVNK------------------- 1047
Query: 882 FLHWAEWHYNTSIHSAIGMSPYQAVFGKPPPTLQQYISGSSNIEAVNSELLNRDTILEIL 703
HYNT+IHSA G+SP+Q VFGKPPP+L QYI GSS++EA++S+L+ R+ I++ L
Sbjct: 1048 -------HYNTAIHSATGLSPFQVVFGKPPPSLPQYIQGSSSLEALDSDLVTREEIIQSL 1100
Query: 702 RKKLLKAQETMKLHADKRRLPHPFKVGDLVFVKLRPHRQISVT*YRVQKLAKRYGPYKIL 523
+KKL KAQ MK +ADKRR+PHPF GDLV
Sbjct: 1101 QKKLEKAQADMKKYADKRRIPHPFGEGDLVL----------------------------- 1131
Query: 522 RAIGTVAFELQLPPGSKIHPIFHASQLKPCLGTTVDTLELPPKAVDNMPILQPLAILAQQ 343
IG VAFEL LPP S+IHP+FHAS+LKP GT ++ L LP +A+ N P++ P+AILAQQ
Sbjct: 1132 --IGEVAFELDLPPKSRIHPVFHASKLKPYHGTEMEALPLPTEAIHNHPLVHPIAILAQQ 1189
Query: 342 TV-NNKRQLLVQWTGLLPEDATWEDEEAFKLSYPALNLEDKVLSQGEGDVTGPAEEIEDY 166
++LVQW+ PEDATWE + +P L+LE KV GE DV E
Sbjct: 1190 DAEGTSPKVLVQWSNSFPEDATWESLADIEAIFPNLDLEGKVSPDGERDVMDQINTDE-- 1247
Query: 165 XXXXXXXXXXEVQTPKGRAKRNRTKPKWFNDHVM 64
KGR KR KP W D V+
Sbjct: 1248 -------------PNKGRGKRTSVKPYWTRDFVI 1268
>gb|PNX92353.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
Length = 1502
Score = 645 bits (1663), Expect(2) = 0.0
Identities = 318/543 (58%), Positives = 394/543 (72%), Gaps = 1/543 (0%)
Frame = -2
Query: 2735 NAITIKDRFPIPAVDELLDELYGTTFFSKLDLRSGYHQIRMHSGDISKTAFRTHQGHYEF 2556
NAIT+KDRFPIP VDELLDEL G ++FSKLDL GYHQI M D+ KTAFRTH GH+EF
Sbjct: 617 NAITVKDRFPIPTVDELLDELGGASWFSKLDLLQGYHQILMKETDVEKTAFRTHTGHFEF 676
Query: 2555 LVMPFGLCNAPSTFQATMNILFQPYLRQFVIVFFYDILVFSKSLQDHVYHLSIVFTVLRD 2376
+VMPFGLCNAPSTFQATMN LFQP+LR+F+IVFF DIL++S +L+DHV HL+ L +
Sbjct: 677 MVMPFGLCNAPSTFQATMNALFQPFLRKFIIVFFDDILIYSSTLEDHVLHLAQTLQTLSE 736
Query: 2375 NQFFLKRSKCSFGQSSISYLGHIVSPHGVAPDPEKIEAMTNWPVPTTLKQLRGFLGLTGF 2196
QF LKRSKC F Q I YLGHIVS GV P K++A+ WP+P +++ LRGFLGL GF
Sbjct: 737 AQFVLKRSKCVFAQRQIEYLGHIVSIKGVEPIAAKVQAILQWPIPKSVRALRGFLGLAGF 796
Query: 2195 YRKFVSHYASIAAPLTELLKKDCFQWSDTAQSAFMALKDAMTRAPVLRLPNFAEDFCIDT 2016
YR+F+ YA+IA+ LT+LLKKDCF W+ AQ AF LK A+++APVL LP+F F ++T
Sbjct: 797 YRRFIKGYATIASALTQLLKKDCFGWNLEAQLAFDNLKRAISQAPVLVLPDFTLPFTVET 856
Query: 2015 DASGVGMDAVLSQGGHPICYFSNKFCPKLLSASTYVRDLCAITSAVKKWRPYLLGRKFTT 1836
DASGVGM AVLSQ GHPI +FS FCPK+ ASTYVR+L AIT+AVKKWR YLLG KF
Sbjct: 857 DASGVGMGAVLSQQGHPIAFFSKPFCPKMQRASTYVRELFAITTAVKKWRQYLLGHKFKI 916
Query: 1835 HTDQKSLRELMTQVVQTPEQQFYLAKLLGYSYEIVYKPGKQNSVADALSRIHE-PPAICL 1659
TD +SL+ELM+QV+QTPEQQ YLA+L+GY Y I Y+ G+ N VADALSRI E PA L
Sbjct: 917 LTDHRSLKELMSQVIQTPEQQMYLARLIGYEYTIQYRSGQSNVVADALSRIAESEPASLL 976
Query: 1658 GLTVPHCVFYDKITAVCQSDPNFIHLRSQVQQHPERYPDFQVINSMLFFKGKLYIPSDSP 1479
LTVPH F ++ ++ F+ S +Q +P + +F +++ ++ +KGK+++P S
Sbjct: 977 NLTVPHFTFIQQLKRELSTNSEFLSKSSDIQANPLDHSEFTLVSGLIMYKGKIWLPKSSS 1036
Query: 1478 VKFTLMEEFHSSLVGGHSGITKTLGRLKDNVYWEGMSKDVADFVKACIICQQTKIPAHLP 1299
TL+ EFH + GGH G+TKT R+ DN W G+ +DV FV ACI CQ K A P
Sbjct: 1037 FLPTLLAEFHQTPTGGHMGVTKTFARISDNFIWAGLKEDVQRFVAACIDCQHIKYEARKP 1096
Query: 1298 YGLLQPLPIPTNIWEDISLDCIVGLPSFQNHTVILVIVDRLSKASHFGMLPSNFTAVKVA 1119
GLL PLPIP WE++SLD IVGLP + +T IL +VDR SK H GML S+FTA KVA
Sbjct: 1097 AGLLCPLPIPNGPWEELSLDFIVGLPPYCGYTTILTVVDRFSKGIHLGMLQSHFTAHKVA 1156
Query: 1118 ELF 1110
LF
Sbjct: 1157 TLF 1159
Score = 348 bits (892), Expect(2) = 0.0
Identities = 180/354 (50%), Positives = 232/354 (65%), Gaps = 8/354 (2%)
Frame = -1
Query: 1104 MVSSVHGMPKSIVSDRDPIFMSKFWQELFRLSGTKLRMSSAYHPQSDGQTEIVNKALQQY 925
MV +HGMPKS+VSDRDP+FMS FWQELF+LSGTKLRMSS+YHPQSDGQTE++N+ ++QY
Sbjct: 1162 MVGKLHGMPKSLVSDRDPLFMSHFWQELFKLSGTKLRMSSSYHPQSDGQTEVLNRVVEQY 1221
Query: 924 LRCFVHDQPRTWGKFLHWAEWHYNTSIHSAIGMSPYQAVFGKPPPTLQQYISGSSNIEAV 745
LR FVH +P +WGK+L WAEW YNTS HS G+SPY+ +GKPPP++ Y+ G+S IEAV
Sbjct: 1222 LRAFVHQKPSSWGKYLMWAEWSYNTSRHSGTGLSPYEITYGKPPPSIPHYLRGTSLIEAV 1281
Query: 744 NSELLNRDTILEILRKKLLKAQETMKLHADKRRLPHPFKVGDLVFVKLRPHRQISVT*YR 565
+ L NRDT++ +L++KL KAQ+ MK ADK R P F++GD V VKLRP+RQ +
Sbjct: 1282 DDMLQNRDTMITLLKQKLEKAQKNMKYFADKNRRPVQFEIGDWVMVKLRPYRQSTAKDMA 1341
Query: 564 VQKLAKR-YGPYKILRAIGTVAFELQLPPGSKIHPIFHASQLKPCL---GTTVDTLELPP 397
KLAKR YGP++I IGT A+ L LP S+IHP+FH S LKP G V LELP
Sbjct: 1342 HSKLAKRFYGPFQITDKIGTAAYRLDLPETSRIHPVFHCSVLKPFNSGGGILVQGLELPD 1401
Query: 396 KAVDNMPILQPLAILAQQTVNN----KRQLLVQWTGLLPEDATWEDEEAFKLSYPALNLE 229
+ +N PI+ PL +L + N K ++LVQW GL P+D +WE+ A K +Y NLE
Sbjct: 1402 SSAENQPIITPLTVLQTRWNMNVDPPKLEVLVQWKGLSPDDTSWEEWNALKSNY---NLE 1458
Query: 228 DKVLSQGEGDVTGPAEEIEDYXXXXXXXXXXEVQTPKGRAKRNRTKPKWFNDHV 67
DKV+ +E+ D + R KR T P F D+V
Sbjct: 1459 DKVI----------PDEVRDVRPNKDEPNTTTTSLTQQRPKRKITPPGHFKDYV 1502
>dbj|GAU51717.1| hypothetical protein TSUD_415230, partial [Trifolium subterraneum]
Length = 1147
Score = 566 bits (1459), Expect(2) = 0.0
Identities = 273/404 (67%), Positives = 320/404 (79%)
Frame = -2
Query: 2315 GHIVSPHGVAPDPEKIEAMTNWPVPTTLKQLRGFLGLTGFYRKFVSHYASIAAPLTELLK 2136
GHIVS GV PDP KI AM NWP P +KQLRGFLGLTGFYRKFV +YAS+AAPLT LLK
Sbjct: 385 GHIVSAEGVGPDPSKISAMINWPSPVNIKQLRGFLGLTGFYRKFVRNYASLAAPLTALLK 444
Query: 2135 KDCFQWSDTAQSAFMALKDAMTRAPVLRLPNFAEDFCIDTDASGVGMDAVLSQGGHPICY 1956
+D F WS+ AQ+AF +LK AM+ PVL LPNF E F ++TDASG+GM AVL Q GHPICY
Sbjct: 445 RDAFIWSEEAQAAFESLKKAMSEVPVLGLPNFNEKFVLETDASGLGMGAVLIQNGHPICY 504
Query: 1955 FSNKFCPKLLSASTYVRDLCAITSAVKKWRPYLLGRKFTTHTDQKSLRELMTQVVQTPEQ 1776
FS +FCP++ ASTYVR+LCAIT+AVKKWR YLLG FT TDQ+SLRELMTQ++QTPEQ
Sbjct: 505 FSKQFCPRMTQASTYVRELCAITTAVKKWRTYLLGNTFTIFTDQRSLRELMTQIIQTPEQ 564
Query: 1775 QFYLAKLLGYSYEIVYKPGKQNSVADALSRIHEPPAICLGLTVPHCVFYDKITAVCQSDP 1596
QFYLAKLLGYSYEIVYKPG QN VADALSR+H CL +TVP F D
Sbjct: 565 QFYLAKLLGYSYEIVYKPGPQNRVADALSRVH-----CLVITVPQLDFLTTFKQQLAEDS 619
Query: 1595 NFIHLRSQVQQHPERYPDFQVINSMLFFKGKLYIPSDSPVKFTLMEEFHSSLVGGHSGIT 1416
F + V+ P YPDF+++N +LFFKGKL+IP+ SP+K TL+EEFHSS +GGHSGI
Sbjct: 620 EFQQFLALVKATPTDYPDFELLNGLLFFKGKLFIPATSPLKHTLLEEFHSSTIGGHSGIH 679
Query: 1415 KTLGRLKDNVYWEGMSKDVADFVKACIICQQTKIPAHLPYGLLQPLPIPTNIWEDISLDC 1236
+T GRL++NV+WEGM KDV FVK+C +CQQ K H PYGLLQPLPIP +WED+SLD
Sbjct: 680 RTYGRLQENVFWEGMRKDVIQFVKSCSVCQQNKPTNHSPYGLLQPLPIPHRVWEDVSLDF 739
Query: 1235 IVGLPSFQNHTVILVIVDRLSKASHFGMLPSNFTAVKVAELFAK 1104
IVGLPSFQ+HT ILV+VDRLSKA+HFG+LP++FTAVKVA+LFAK
Sbjct: 740 IVGLPSFQSHTAILVVVDRLSKAAHFGLLPTHFTAVKVADLFAK 783
Score = 420 bits (1080), Expect(2) = 0.0
Identities = 204/344 (59%), Positives = 255/344 (74%), Gaps = 3/344 (0%)
Frame = -1
Query: 1104 MVSSVHGMPKSIVSDRDPIFMSKFWQELFRLSGTKLRMSSAYHPQSDGQTEIVNKALQQY 925
M+ +HGMP+S+VSDRDPIF+S FWQELF LSGTKLRMS+AYHPQSDGQTEIVNK LQQY
Sbjct: 784 MICRLHGMPRSMVSDRDPIFLSHFWQELFHLSGTKLRMSTAYHPQSDGQTEIVNKVLQQY 843
Query: 924 LRCFVHDQPRTWGKFLHWAEWHYNTSIHSAIGMSPYQAVFGKPPPTLQQYISGSSNIEAV 745
LRCFV D+P WGKFLHWAEWHYNT+ H++ G+SP+Q V+G+ PPTL YI GSS I+A+
Sbjct: 844 LRCFVSDKPSQWGKFLHWAEWHYNTATHTSTGLSPFQVVYGRAPPTLVDYIPGSSTIQAI 903
Query: 744 NSELLNRDTILEILRKKLLKAQETMKLHADKRRLPHPFKVGDLVFVKLRPHRQISVT*YR 565
++ L +R+ IL++L+ KLLKAQ+ MK AD+ R+ H FK GDLVFVKLRP+RQ SV R
Sbjct: 904 DATLSDRNIILQLLKNKLLKAQQIMKEQADQHRISHSFKEGDLVFVKLRPYRQNSVLGRR 963
Query: 564 VQKLAKR-YGPYKILRAIGTVAFELQLPPGSKIHPIFHASQLKPCLGTTVDTLELPPKAV 388
V KL+KR YGP+K+++AIG VAFEL+LPP SKIHP+FH SQLKPC TLELP +A+
Sbjct: 964 VHKLSKRFYGPFKLIKAIGEVAFELELPPNSKIHPVFHVSQLKPCFDNNTATLELPTEAI 1023
Query: 387 DNMPILQPLAIL--AQQTVNNKRQLLVQWTGLLPEDATWEDEEAFKLSYPALNLEDKVLS 214
DN P +QPLA+L +N++ ++L+QW GL PEDATWE+ E K +YPA +LEDKV+
Sbjct: 1024 DNQPCIQPLAVLDWKNNELNDQIEVLIQWKGLFPEDATWENYEDIKATYPAFDLEDKVIL 1083
Query: 213 QGEGDVTGPAEEIEDYXXXXXXXXXXEVQTPKGRAKRNRTKPKW 82
G D ++ ED+ E P R KRN P W
Sbjct: 1084 NGTRDEVN--QKNEDFEKELGLTEDEEEPIPYQRTKRNTRGPAW 1125
Score = 81.3 bits (199), Expect = 8e-12
Identities = 38/46 (82%), Positives = 41/46 (89%)
Frame = -2
Query: 2735 NAITIKDRFPIPAVDELLDELYGTTFFSKLDLRSGYHQIRMHSGDI 2598
NA+T KDRFPIPA+DELLDELYGT +FSKLDLRSGYHQIRM G I
Sbjct: 342 NAVTSKDRFPIPAIDELLDELYGTHWFSKLDLRSGYHQIRMAQGHI 387
>ref|XP_014624262.1| PREDICTED: uncharacterized protein LOC106796480 [Glycine max]
Length = 1860
Score = 635 bits (1639), Expect(2) = 0.0
Identities = 312/543 (57%), Positives = 391/543 (72%), Gaps = 1/543 (0%)
Frame = -2
Query: 2735 NAITIKDRFPIPAVDELLDELYGTTFFSKLDLRSGYHQIRMHSGDISKTAFRTHQGHYEF 2556
NA+TI+DRFPIP +DELLDEL G +FSKLDL GYHQIRM+ DI KTAFRTH GHYEF
Sbjct: 616 NALTIRDRFPIPTIDELLDELGGACYFSKLDLLQGYHQIRMNPEDIPKTAFRTHHGHYEF 675
Query: 2555 LVMPFGLCNAPSTFQATMNILFQPYLRQFVIVFFYDILVFSKSLQDHVYHLSIVFTVLRD 2376
VMPFGLCNAPS+FQATMN +FQPYLR+F+IVFF DIL++S S+ H+ HL I F VL
Sbjct: 676 KVMPFGLCNAPSSFQATMNSIFQPYLRRFIIVFFDDILIYSTSMDAHLQHLEITFKVLLT 735
Query: 2375 NQFFLKRSKCSFGQSSISYLGHIVSPHGVAPDPEKIEAMTNWPVPTTLKQLRGFLGLTGF 2196
+QF LK SKC+F Q + YLGH+VS +GV P +KIEA+ WP P T K LR FLGL GF
Sbjct: 736 HQFALKLSKCTFAQRQVEYLGHLVSFNGVEPLTDKIEAVRQWPSPRTAKALRSFLGLAGF 795
Query: 2195 YRKFVSHYASIAAPLTELLKKDCFQWSDTAQSAFMALKDAMTRAPVLRLPNFAEDFCIDT 2016
YR+F+ YA+IAAPL + D FQW+D Q+AF LK A++ APVL LP+F F I+T
Sbjct: 796 YRRFIKGYATIAAPLVKATTLDPFQWTDVTQAAFDQLKLALSSAPVLALPDFHLPFTIET 855
Query: 2015 DASGVGMDAVLSQGGHPICYFSNKFCPKLLSASTYVRDLCAITSAVKKWRPYLLGRKFTT 1836
DASGVG+ AVLSQ GHPI YFS F KLL +STYVR+L AIT+AVKKWR YLLG +F
Sbjct: 856 DASGVGLGAVLSQKGHPIAYFSKPFSAKLLRSSTYVRELYAITAAVKKWRQYLLGHRFVI 915
Query: 1835 HTDQKSLRELMTQVVQTPEQQFYLAKLLGYSYEIVYKPGKQNSVADALSRIHEP-PAICL 1659
TD +SL+EL+TQVVQTPEQ YLA+L+GY YEI Y+ G N ADALSR+ +P ++ L
Sbjct: 916 LTDHRSLKELLTQVVQTPEQHMYLARLMGYDYEIHYRSGASNQAADALSRVPDPDSSLAL 975
Query: 1658 GLTVPHCVFYDKITAVCQSDPNFIHLRSQVQQHPERYPDFQVINSMLFFKGKLYIPSDSP 1479
L+VP F D++ + +++H R + HP ++P F V+N+++ + ++++P D P
Sbjct: 976 MLSVPCLTFMDELCSQLDQHSDYVHRRQDIANHPAKHPGFSVVNNLILHRHRIWLPRDIP 1035
Query: 1478 VKFTLMEEFHSSLVGGHSGITKTLGRLKDNVYWEGMSKDVADFVKACIICQQTKIPAHLP 1299
+ TL+ EFH++ GGHSGI KT+ R+ +N YW G+ +DVA FV C CQ TK
Sbjct: 1036 IIPTLLVEFHATPTGGHSGIAKTIARVSENFYWPGLREDVATFVANCRDCQSTKYETKKL 1095
Query: 1298 YGLLQPLPIPTNIWEDISLDCIVGLPSFQNHTVILVIVDRLSKASHFGMLPSNFTAVKVA 1119
GLL PLP+P WED+SLD IVGLP ++ HTVILV+VDR SK H GMLP+ TA VA
Sbjct: 1096 AGLLCPLPVPHRPWEDLSLDFIVGLPPYKGHTVILVVVDRFSKGVHLGMLPTAHTAFMVA 1155
Query: 1118 ELF 1110
LF
Sbjct: 1156 TLF 1158
Score = 312 bits (799), Expect(2) = 0.0
Identities = 167/316 (52%), Positives = 214/316 (67%), Gaps = 7/316 (2%)
Frame = -1
Query: 1104 MVSSVHGMPKSIVSDRDPIFMSKFWQELFRLSGTKLRMSSAYHPQSDGQTEIVNKALQQY 925
MV +HG+P+S+VSDRDP+F+SKFWQELFR SGT LRMSSAYHPQSDGQTE +N+ ++QY
Sbjct: 1161 MVVKIHGVPRSLVSDRDPLFLSKFWQELFRRSGTHLRMSSAYHPQSDGQTEAINRIIEQY 1220
Query: 924 LRCFVHDQPRTWGKFLHWAEWHYNTSIHSAIGMSPYQAVFGKPPPTLQQYISGSSNIEAV 745
LR FVH +PR WG+ L WAEW +NTS +SA G +PY+ FG+ P +Y++G SNI+A+
Sbjct: 1221 LRSFVHRRPRIWGRLLPWAEWSHNTSWNSATGATPYEVTFGRKPFNFPEYLAGDSNIDAI 1280
Query: 744 NSELLNRDTILEILRKKLLKAQETMKLHADKRRLPHPFKVGDLVFVKLRPHRQISVT*YR 565
++ L +R+ ++RKKLLKAQ MK ADK R F G V ++LRPHRQ S
Sbjct: 1281 DTLLCDREETFLMIRKKLLKAQILMKEKADKHRRDIVFSPGQWVLLRLRPHRQTSARENP 1340
Query: 564 V--QKLAKR-YGPYKILRAIGTVAFELQLPPGSKIHPIFHASQLKPCLGTTVDTL--ELP 400
KLAKR YGP+++L AIG VA+ LQLPP +KIHPIFH S LKP G D + LP
Sbjct: 1341 TISGKLAKRYYGPFQVLEAIGKVAYRLQLPPDAKIHPIFHVSMLKPFKGDPNDPVANPLP 1400
Query: 399 PKAVDNMPILQPLAILAQQTVN-NKRQLLVQWTGLLPEDATWEDEEAFKLSYPALNLEDK 223
D+ P++QP AILA + + + +LVQW GL P++ +WED Y +LEDK
Sbjct: 1401 ISFHDDHPLVQPAAILASRPSSVSGWDVLVQWHGLSPDETSWEDWSTLCRDY---HLEDK 1457
Query: 222 VLSQG-EGDVTGPAEE 178
VLSQG GD G E
Sbjct: 1458 VLSQGPRGDTGGNIAE 1473
>gb|PNX92970.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
Length = 1483
Score = 633 bits (1632), Expect(2) = 0.0
Identities = 313/554 (56%), Positives = 392/554 (70%), Gaps = 1/554 (0%)
Frame = -2
Query: 2735 NAITIKDRFPIPAVDELLDELYGTTFFSKLDLRSGYHQIRMHSGDISKTAFRTHQGHYEF 2556
N+ITI+DRFP+P +DELLDEL T+FSKLDLR G+HQIRMH DI KTAFRTHQGHYEF
Sbjct: 613 NSITIRDRFPMPTIDELLDELGSATWFSKLDLRQGFHQIRMHPDDIPKTAFRTHQGHYEF 672
Query: 2555 LVMPFGLCNAPSTFQATMNILFQPYLRQFVIVFFYDILVFSKSLQDHVYHLSIVFTVLRD 2376
VMPFGLCNAPSTFQA MN L QP+LR+FV VFF DILV+S SL+DH+ HL VF L
Sbjct: 673 RVMPFGLCNAPSTFQAAMNNLLQPFLRKFVTVFFDDILVYSMSLEDHLKHLESVFQALIQ 732
Query: 2375 NQFFLKRSKCSFGQSSISYLGHIVSPHGVAPDPEKIEAMTNWPVPTTLKQLRGFLGLTGF 2196
+FFLK+SKC Q + YLGH+VS GV P+P KI+A+ +WP+PT + LRGFLGLTGF
Sbjct: 733 GEFFLKQSKCLLAQRRLEYLGHVVSAGGVCPEPSKIQAILDWPLPTNITALRGFLGLTGF 792
Query: 2195 YRKFVSHYASIAAPLTELLKKDCFQWSDTAQSAFMALKDAMTRAPVLRLPNFAEDFCIDT 2016
YRKF+ YASIA+PLT LL+KD F W+ A AF ALK AMT AP L LP+F++ F ++T
Sbjct: 793 YRKFIQRYASIASPLTSLLRKDSFHWNPEATIAFNALKLAMTSAPTLALPDFSKPFILET 852
Query: 2015 DASGVGMDAVLSQGGHPICYFSNKFCPKLLSASTYVRDLCAITSAVKKWRPYLLGRKFTT 1836
DASG+ M AVL Q HPI +FS FC +L ASTYVR+L AIT+AVKKWR YLLG KF
Sbjct: 853 DASGIAMGAVLMQDSHPIAFFSKPFCQRLQKASTYVRELHAITTAVKKWRQYLLGHKFII 912
Query: 1835 HTDQKSLRELMTQVVQTPEQQFYLAKLLGYSYEIVYKPGKQNSVADALSRIHEPPA-ICL 1659
TD +SL+EL+TQ++QTPEQQ YLAKL+GY Y I YK GK N VADALSR+ E P+ + L
Sbjct: 913 FTDHQSLKELLTQIIQTPEQQIYLAKLMGYDYTIQYKTGKTNVVADALSRLPETPSGMHL 972
Query: 1658 GLTVPHCVFYDKITAVCQSDPNFIHLRSQVQQHPERYPDFQVINSMLFFKGKLYIPSDSP 1479
L++P+ +F +++ + F L +Q+ Q P ++P +++ ++ + ++++ P
Sbjct: 973 SLSMPNFLFLEQLKLALAASTPFTSLFNQISQTPSQFPKYKIHQGLILYDNRIWLDPSLP 1032
Query: 1478 VKFTLMEEFHSSLVGGHSGITKTLGRLKDNVYWEGMSKDVADFVKACIICQQTKIPAHLP 1299
TL+EEFHSS GH G KTL RL+ N +WEGM V +F+ C ICQQ K P
Sbjct: 1033 FCKTLLEEFHSSPSAGHMGFAKTLARLQANFWWEGMRNHVKEFITNCSICQQVKYETKKP 1092
Query: 1298 YGLLQPLPIPTNIWEDISLDCIVGLPSFQNHTVILVIVDRLSKASHFGMLPSNFTAVKVA 1119
GLLQPLPIP IWED+SLD I GLP ++ +LV+VDR SK H L ++TA KVA
Sbjct: 1093 SGLLQPLPIPHAIWEDLSLDFITGLPPSNGYSAVLVVVDRFSKGVHLAALVPHYTAHKVA 1152
Query: 1118 ELFAKWSVLSTVCQ 1077
LF TVC+
Sbjct: 1153 LLF-----FDTVCK 1161
Score = 312 bits (800), Expect(2) = 0.0
Identities = 163/317 (51%), Positives = 212/317 (66%), Gaps = 6/317 (1%)
Frame = -1
Query: 1101 VSSVHGMPKSIVSDRDPIFMSKFWQELFRLSGTKLRMSSAYHPQSDGQTEIVNKALQQYL 922
V +HGMP+S+VSDRDP+F+SKFW+ELF L GT LRMS+AYHP++DGQTE+ N+ L+QYL
Sbjct: 1159 VCKIHGMPRSLVSDRDPLFISKFWRELFTLCGTTLRMSTAYHPETDGQTEVYNRVLEQYL 1218
Query: 921 RCFVHDQPRTWGKFLHWAEWHYNTSIHSAIGMSPYQAVFGKPPPTLQQYISGSSNIEAVN 742
R FVH +P W KFL AEW YNTSIHS+ G SPY+ FGKPPP++ QYI G S+IEAV+
Sbjct: 1219 RSFVHHKPSQWSKFLALAEWSYNTSIHSSTGHSPYEITFGKPPPSVPQYIQGQSSIEAVD 1278
Query: 741 SELLNRDTILEILRKKLLKAQETMKLHADKRRLPHPFKVGDLVFVKLRPHRQISVT*YRV 562
S L NR ++ LR+KLLK+Q MK AD+ R F VG V+V+LRP+RQ +
Sbjct: 1279 SILANRQQLIITLRQKLLKSQAAMKHSADQHRRDIEFDVGSFVYVRLRPYRQKTANPTTY 1338
Query: 561 QKLAKR-YGPYKILRAIGTVAFELQLPPGSKIHPIFHASQLKPCLGTTVDTLELPPKAVD 385
KL+KR YGP+K+++ IG VA+ L LP KIHP+FH S LK G T +PP ++D
Sbjct: 1339 TKLSKRYYGPFKVIKRIGKVAYHLDLPLTCKIHPVFHCSLLKLHHGPTPSVTTIPPLSID 1398
Query: 384 NMPILQPLAI----LAQQTVNNKRQLLVQWTGLLPEDATWEDEEAFKLSYPALNLEDKVL 217
+ PI+ PL I L T + LVQW+GL ED +WE+ ++ Y +LEDKV
Sbjct: 1399 HHPIVTPLTILDTKLDSSTDPPTKLALVQWSGLPTEDTSWENWDSLCSDY---HLEDKVS 1455
Query: 216 SQGEGDVT-GPAEEIED 169
GDV+ P+ I D
Sbjct: 1456 FPAAGDVSKSPSTSILD 1472
>gb|KYP49943.1| Transposon Ty3-I Gag-Pol polyprotein [Cajanus cajan]
Length = 1441
Score = 643 bits (1659), Expect(2) = 0.0
Identities = 311/542 (57%), Positives = 393/542 (72%)
Frame = -2
Query: 2735 NAITIKDRFPIPAVDELLDELYGTTFFSKLDLRSGYHQIRMHSGDISKTAFRTHQGHYEF 2556
NA+T+KD+FPIP +DELLDEL T++FSKLDL SG+ QI M D SKTAFRTH GH+EF
Sbjct: 563 NAVTVKDKFPIPTIDELLDELGTTSWFSKLDLFSGFDQILMKPSDSSKTAFRTHNGHFEF 622
Query: 2555 LVMPFGLCNAPSTFQATMNILFQPYLRQFVIVFFYDILVFSKSLQDHVYHLSIVFTVLRD 2376
VMPFGLCNAPSTFQATMN LF+P+LR+F+IVFF DILV+S +L++H+ HL I F +L D
Sbjct: 623 KVMPFGLCNAPSTFQATMNDLFRPHLRRFIIVFFDDILVYSSTLEEHILHLQIAFKLLLD 682
Query: 2375 NQFFLKRSKCSFGQSSISYLGHIVSPHGVAPDPEKIEAMTNWPVPTTLKQLRGFLGLTGF 2196
+F LK +KC GQ SI YLGH+VS GV PDP K++A+ +WP+P LK LRGFLGLTGF
Sbjct: 683 KKFHLKGTKCHIGQQSIQYLGHVVSAAGVTPDPIKVQAIIDWPIPLNLKSLRGFLGLTGF 742
Query: 2195 YRKFVSHYASIAAPLTELLKKDCFQWSDTAQSAFMALKDAMTRAPVLRLPNFAEDFCIDT 2016
YR FV YA+IA+ LT+LLKKD F +D A AF ALK A+T APVL LPNF F + T
Sbjct: 743 YRCFVKRYAAIASSLTDLLKKDSFLCTDHATVAFNALKTAITSAPVLALPNFDSVFAVQT 802
Query: 2015 DASGVGMDAVLSQGGHPICYFSNKFCPKLLSASTYVRDLCAITSAVKKWRPYLLGRKFTT 1836
DASG GM AVLSQ GHPI +FS KFCPKL ++S Y+R+LCAITSAV+KWR YLLGR F
Sbjct: 803 DASGTGMGAVLSQQGHPIAFFSKKFCPKLRNSSAYIRELCAITSAVQKWRQYLLGRHFII 862
Query: 1835 HTDQKSLRELMTQVVQTPEQQFYLAKLLGYSYEIVYKPGKQNSVADALSRIHEPPAICLG 1656
+TDQ+S+++L++Q TP QQ YL KLLG+ +EI YKPG+ N+VA ALS I
Sbjct: 863 YTDQQSIKDLLSQTALTPYQQSYLTKLLGFDFEIHYKPGRSNTVAYALSHILPETNSFFI 922
Query: 1655 LTVPHCVFYDKITAVCQSDPNFIHLRSQVQQHPERYPDFQVINSMLFFKGKLYIPSDSPV 1476
+++ F + + SD F+ L+ ++ P +PDF + ++ KGK++ P +
Sbjct: 923 ISITQMDFLEDLKRCLSSDNAFLDLKERLLHAPSSFPDFSIHQDLILHKGKIWFPRSCSM 982
Query: 1475 KFTLMEEFHSSLVGGHSGITKTLGRLKDNVYWEGMSKDVADFVKACIICQQTKIPAHLPY 1296
L+ EFHS+ + GH G+T+TL +L+ N YWE M KDV FV C CQQTK+P P
Sbjct: 983 IQLLLHEFHSTPLAGHPGVTRTLAKLQANFYWENMRKDVLTFVAQCTTCQQTKVPTQRPP 1042
Query: 1295 GLLQPLPIPTNIWEDISLDCIVGLPSFQNHTVILVIVDRLSKASHFGMLPSNFTAVKVAE 1116
GLLQP+P P+ WED+SLD I+GLP +Q HT ILV+VDR SK +HFGMLP +FTA KVA+
Sbjct: 1043 GLLQPIPPPSRCWEDLSLDFIIGLPPYQGHTTILVVVDRFSKGAHFGMLPRSFTAAKVAD 1102
Query: 1115 LF 1110
LF
Sbjct: 1103 LF 1104
Score = 301 bits (772), Expect(2) = 0.0
Identities = 154/310 (49%), Positives = 208/310 (67%), Gaps = 7/310 (2%)
Frame = -1
Query: 1104 MVSSVHGMPKSIVSDRDPIFMSKFWQELFRLSGTKLRMSSAYHPQSDGQTEIVNKALQQY 925
MV +HG+P+S++SDRDPIF+S+FW+ELFR+SGTKLRMS+AYHPQ+D QTE NK LQQY
Sbjct: 1107 MVCKLHGLPRSLISDRDPIFLSQFWRELFRMSGTKLRMSTAYHPQTDSQTEFTNKILQQY 1166
Query: 924 LRCFVHDQPRTWGKFLHWAEWHYNTSIHSAIGMSPYQAVFGKPPPTLQQYISGSSNIEAV 745
LRCFVH +P WGK L WA+W +NTS++ + G +P++ +FG PPP++ Q ++ + A
Sbjct: 1167 LRCFVHHRPSLWGKLLPWAKWCFNTSLNYSTGYTPFEVMFGHPPPSIPQILNTETTNAAA 1226
Query: 744 NSELLNRDTILEILRKKLLKAQETMKLHADKRRLPHPFKVGDLVFVKLRPHRQISVT*YR 565
+ E+ +R+ I++ L LLKAQE MK D R F VGD V+V+LRP RQ VT
Sbjct: 1227 HFEVHSREEIMKKLHFNLLKAQENMKHWVDSHRRDLSFDVGDWVYVRLRPRRQSFVTGQY 1286
Query: 564 VQKLAKR-YGPYKILRAIGTVAFELQLPPGSKIHPIFHASQLKPCLG--TTVDTLELPPK 394
+ KL KR +GP+ +L IG VA+ L LPP +KIH FH S L+P G + L LPP+
Sbjct: 1287 LGKLQKRFFGPFHVLEKIGAVAYRLDLPPSAKIHNAFHISLLRPHHGPLPSPPPLNLPPE 1346
Query: 393 AVDNMPILQPLAIL----AQQTVNNKRQLLVQWTGLLPEDATWEDEEAFKLSYPALNLED 226
DN PIL P+AIL + T N ++ +L+QW GL E+A+WE + + +LED
Sbjct: 1347 IEDNQPILTPVAILNWKMSSDTTNPQKLVLIQWEGLPLEEASWEPWSQIQAQF---HLED 1403
Query: 225 KVLSQGEGDV 196
KV GEGDV
Sbjct: 1404 KVTLDGEGDV 1413
>dbj|GAU18876.1| hypothetical protein TSUD_228660 [Trifolium subterraneum]
Length = 1494
Score = 787 bits (2033), Expect = 0.0
Identities = 383/561 (68%), Positives = 448/561 (79%)
Frame = -2
Query: 2735 NAITIKDRFPIPAVDELLDELYGTTFFSKLDLRSGYHQIRMHSGDISKTAFRTHQGHYEF 2556
NAIT+KDRFPIPA+DELLDELYGT +FSKLDLRSGYHQIRM S D+ KTAFRTHQGHYEF
Sbjct: 614 NAITVKDRFPIPAIDELLDELYGTEWFSKLDLRSGYHQIRMASQDVHKTAFRTHQGHYEF 673
Query: 2555 LVMPFGLCNAPSTFQATMNILFQPYLRQFVIVFFYDILVFSKSLQDHVYHLSIVFTVLRD 2376
LVMPFGLCNAPSTFQATMN++F+PYLR+FVIVFF DILV+S +L DH+ HL VF L D
Sbjct: 674 LVMPFGLCNAPSTFQATMNLIFEPYLRRFVIVFFDDILVYSPTLDDHLTHLEKVFQCLLD 733
Query: 2375 NQFFLKRSKCSFGQSSISYLGHIVSPHGVAPDPEKIEAMTNWPVPTTLKQLRGFLGLTGF 2196
++F LK SKCS Q+SI YLGHIVS GV PDP KI AM WP PTT+KQL GFLGLTGF
Sbjct: 734 HEFCLKESKCSIAQNSIEYLGHIVSADGVGPDPAKISAMVTWPAPTTVKQLHGFLGLTGF 793
Query: 2195 YRKFVSHYASIAAPLTELLKKDCFQWSDTAQSAFMALKDAMTRAPVLRLPNFAEDFCIDT 2016
YRKFV HY+++AAPLT LLK+D F+W++ A AF LK AM+ APVL LPNFAE F ++T
Sbjct: 794 YRKFVKHYSALAAPLTALLKRDSFEWNEDASKAFEQLKLAMSEAPVLALPNFAEKFILET 853
Query: 2015 DASGVGMDAVLSQGGHPICYFSNKFCPKLLSASTYVRDLCAITSAVKKWRPYLLGRKFTT 1836
DASG GM AVL Q HPICY+S +FCP+LL ASTYVR+LCAITSAVKKWR YLLG FT
Sbjct: 854 DASGAGMGAVLIQSNHPICYYSKQFCPRLLVASTYVRELCAITSAVKKWRTYLLGGTFTI 913
Query: 1835 HTDQKSLRELMTQVVQTPEQQFYLAKLLGYSYEIVYKPGKQNSVADALSRIHEPPAICLG 1656
HTDQ+SLRELMTQV+QTPEQQFYLAKLLGYSY+IVYKPG QN VADALSRIH CL
Sbjct: 914 HTDQRSLRELMTQVIQTPEQQFYLAKLLGYSYDIVYKPGAQNRVADALSRIH-----CLA 968
Query: 1655 LTVPHCVFYDKITAVCQSDPNFIHLRSQVQQHPERYPDFQVINSMLFFKGKLYIPSDSPV 1476
L +PH F K+ +D F +VQ P + +FQV++ ++FFKGKL++P+ SP+
Sbjct: 969 LYIPHVEFMTKLKEQLINDTEFQQFLGKVQHQPADFENFQVMDGLIFFKGKLFLPNSSPL 1028
Query: 1475 KFTLMEEFHSSLVGGHSGITKTLGRLKDNVYWEGMSKDVADFVKACIICQQTKIPAHLPY 1296
K TL+EEFHSS +GGHSGI +T GRL++NV+W GM KDV +FVK C+ICQQ K H PY
Sbjct: 1029 KLTLLEEFHSSPIGGHSGIHRTFGRLQENVFWFGMRKDVEEFVKTCVICQQMKSVNHAPY 1088
Query: 1295 GLLQPLPIPTNIWEDISLDCIVGLPSFQNHTVILVIVDRLSKASHFGMLPSNFTAVKVAE 1116
GLLQPLPIP +WEDIS+D IVGLPSFQ+HTVI V+VDRLSKA+HFGML ++FTA KVA+
Sbjct: 1089 GLLQPLPIPDRVWEDISMDFIVGLPSFQSHTVIFVVVDRLSKAAHFGMLATHFTAAKVAD 1148
Query: 1115 LFAKWSVLSTVCQRVSCPIEI 1053
LFA + VC+ + P I
Sbjct: 1149 LFA-----TMVCKLLGMPRSI 1164
Score = 412 bits (1059), Expect = e-121
Identities = 198/317 (62%), Positives = 246/317 (77%), Gaps = 3/317 (0%)
Frame = -1
Query: 1161 FRNAAFQFHCCKSC*AIC*MVSSVHGMPKSIVSDRDPIFMSKFWQELFRLSGTKLRMSSA 982
F A F K MV + GMP+SIVSDRDPIF+S FWQELFRLSGTKLRMS+A
Sbjct: 1134 FGMLATHFTAAKVADLFATMVCKLLGMPRSIVSDRDPIFLSNFWQELFRLSGTKLRMSTA 1193
Query: 981 YHPQSDGQTEIVNKALQQYLRCFVHDQPRTWGKFLHWAEWHYNTSIHSAIGMSPYQAVFG 802
YHPQSDGQTEIVNK LQQYLRCFVH +P WG +LHWAEWHYNT+IH+A G+SP+Q V+G
Sbjct: 1194 YHPQSDGQTEIVNKTLQQYLRCFVHHKPTQWGSYLHWAEWHYNTAIHTATGLSPFQVVYG 1253
Query: 801 KPPPTLQQYISGSSNIEAVNSELLNRDTILEILRKKLLKAQETMKLHADKRRLPHPFKVG 622
+ PP LQ Y+ GS+ I+AV + L++RDT+L+ L+ KLLKAQE MK AD+RR+PH F +G
Sbjct: 1254 RSPPALQDYMVGSTQIQAVEATLVDRDTVLQELKNKLLKAQEVMKAIADQRRIPHKFVIG 1313
Query: 621 DLVFVKLRPHRQISVT*YRVQKLAKR-YGPYKILRAIGTVAFELQLPPGSKIHPIFHASQ 445
DLVFVKLRP+RQISV R+ KL+KR YGP+K+++AIG VAF+L+LPP SKIHP+FH SQ
Sbjct: 1314 DLVFVKLRPYRQISVAGRRIHKLSKRYYGPFKLIQAIGEVAFKLELPPTSKIHPVFHVSQ 1373
Query: 444 LKPCLGTTVDTLELPPKAVDNMPILQPLAILAQQTVN--NKRQLLVQWTGLLPEDATWED 271
LKPC G V LELP +AVDN P++QPL++L + N ++ Q+L+QW GL PED+TWE
Sbjct: 1374 LKPCYGDAVTALELPAEAVDNQPLIQPLSVLNWKWDNEAHEWQVLIQWEGLFPEDSTWES 1433
Query: 270 EEAFKLSYPALNLEDKV 220
+ L+YP +LEDKV
Sbjct: 1434 YQDILLTYPTFHLEDKV 1450
>dbj|GAU27665.1| hypothetical protein TSUD_126110 [Trifolium subterraneum]
Length = 1402
Score = 780 bits (2015), Expect = 0.0
Identities = 376/558 (67%), Positives = 448/558 (80%)
Frame = -2
Query: 2735 NAITIKDRFPIPAVDELLDELYGTTFFSKLDLRSGYHQIRMHSGDISKTAFRTHQGHYEF 2556
NA+TIKDRFPIP++DELLDELYGT FSKLDLRSGYHQIRM D+ +TAFRTHQGHYEF
Sbjct: 546 NALTIKDRFPIPSIDELLDELYGTQIFSKLDLRSGYHQIRMAPSDVHRTAFRTHQGHYEF 605
Query: 2555 LVMPFGLCNAPSTFQATMNILFQPYLRQFVIVFFYDILVFSKSLQDHVYHLSIVFTVLRD 2376
LVMPFGLCNAPSTFQA MN +F+PYLRQFVIVFF DILV+S SL+ HV HL +V L++
Sbjct: 606 LVMPFGLCNAPSTFQAAMNSIFEPYLRQFVIVFFDDILVYSPSLESHVEHLGLVLQCLQE 665
Query: 2375 NQFFLKRSKCSFGQSSISYLGHIVSPHGVAPDPEKIEAMTNWPVPTTLKQLRGFLGLTGF 2196
NQ+ LK+SKCSF Q+SI YLGH+VS GV PDPEKI AM +WP P T+KQLRGFLGLTGF
Sbjct: 666 NQYHLKQSKCSFAQTSIQYLGHVVSATGVGPDPEKISAMMDWPQPKTVKQLRGFLGLTGF 725
Query: 2195 YRKFVSHYASIAAPLTELLKKDCFQWSDTAQSAFMALKDAMTRAPVLRLPNFAEDFCIDT 2016
YRKFV YAS+AAPLTELLKKD F W++ AQ AF LK AMT+APVL LP+F E+F ++T
Sbjct: 726 YRKFVPKYASVAAPLTELLKKDAFCWNEQAQLAFDNLKLAMTKAPVLALPDFNEEFVLET 785
Query: 2015 DASGVGMDAVLSQGGHPICYFSNKFCPKLLSASTYVRDLCAITSAVKKWRPYLLGRKFTT 1836
DASG GM AVL Q GHP+CYFS +FC +LL+ASTYVR+LCAITSAVKKWR YLLGRKF
Sbjct: 786 DASGSGMGAVLIQRGHPLCYFSKQFCSRLLAASTYVRELCAITSAVKKWRTYLLGRKFVI 845
Query: 1835 HTDQKSLRELMTQVVQTPEQQFYLAKLLGYSYEIVYKPGKQNSVADALSRIHEPPAICLG 1656
TDQ+SLRELMTQ++QTPEQQFYLAKLLGYSYEI+YKPG QN VADALSR+H C
Sbjct: 846 LTDQRSLRELMTQIIQTPEQQFYLAKLLGYSYEIMYKPGAQNRVADALSRVH-----CYT 900
Query: 1655 LTVPHCVFYDKITAVCQSDPNFIHLRSQVQQHPERYPDFQVINSMLFFKGKLYIPSDSPV 1476
+TVP F + + Q D F L + QHP+ Y D+++I+ ++FF+GKL++P DSP+
Sbjct: 901 ITVPQWDFLNLLKEQLQEDTQFQELAQNIHQHPQSYSDYKLIDGLIFFRGKLFLPPDSPM 960
Query: 1475 KFTLMEEFHSSLVGGHSGITKTLGRLKDNVYWEGMSKDVADFVKACIICQQTKIPAHLPY 1296
K L++EFH++ +GGHSG+ +T G +K+NVYW+G+ KDV +FVK C++CQQ K PY
Sbjct: 961 KQLLLQEFHATPLGGHSGVHRTYGHIKENVYWQGLQKDVTEFVKTCVVCQQVKPLQTSPY 1020
Query: 1295 GLLQPLPIPTNIWEDISLDCIVGLPSFQNHTVILVIVDRLSKASHFGMLPSNFTAVKVAE 1116
GLL PLPIP +WEDISLD I+GLPSFQNHTVILV+VDRLSK +HFGMLPSNF AVKVAE
Sbjct: 1021 GLLHPLPIPDRVWEDISLDFIIGLPSFQNHTVILVVVDRLSKVAHFGMLPSNFGAVKVAE 1080
Query: 1115 LFAKWSVLSTVCQRVSCP 1062
LF ++ VC+ P
Sbjct: 1081 LF-----INMVCKLHGMP 1093
Score = 350 bits (897), Expect = 2e-99
Identities = 178/348 (51%), Positives = 225/348 (64%), Gaps = 1/348 (0%)
Frame = -1
Query: 1104 MVSSVHGMPKSIVSDRDPIFMSKFWQELFRLSGTKLRMSSAYHPQSDGQTEIVNKALQQY 925
MV +HGMP+S+VSDRDPIF+S+FW+ELFRL+GTKLRMS+AYHPQSDGQTEIVNK LQQY
Sbjct: 1085 MVCKLHGMPRSMVSDRDPIFLSRFWRELFRLNGTKLRMSTAYHPQSDGQTEIVNKTLQQY 1144
Query: 924 LRCFVHDQPRTWGKFLHWAEWHYNTSIHSAIGMSPYQAVFGKPPPTLQQYISGSSNIEAV 745
LRCFVH QP WGKFL WAEWHYNT++HS+ G++P++ V+G+ PP L Y++GSS I+A+
Sbjct: 1145 LRCFVHTQPHQWGKFLPWAEWHYNTAVHSSTGITPFEIVYGRAPPNLSTYVAGSSQIQAL 1204
Query: 744 NSELLNRDTILEILRKKLLKAQETMKLHADKRRLPHPFKVGDLVFVKLRPHRQISVT*YR 565
+ EL RD +L L+KKL KAQETMK K
Sbjct: 1205 DEELTMRDQVLANLKKKLAKAQETMKNGGKK----------------------------- 1235
Query: 564 VQKLAKRYGPYKILRAIGTVAFELQLPPGSKIHPIFHASQLKPCLGTTVDTLELPPKAVD 385
+ YGP+KI+RAIG VAFEL+LPP SKIH +FH S+LKPC G + LELP +A
Sbjct: 1236 --DSQRFYGPFKIIRAIGEVAFELELPPASKIHLVFHVSKLKPCHGNAIPALELPMEAEG 1293
Query: 384 NMPILQPLAILA-QQTVNNKRQLLVQWTGLLPEDATWEDEEAFKLSYPALNLEDKVLSQG 208
N P++QPLA+L ++T + +L+QW GL PEDATWE E +YP +LEDKV G
Sbjct: 1294 NQPLVQPLAVLDWKETEDGSPMVLIQWQGLYPEDATWESYEEMSRAYPEFHLEDKVTLDG 1353
Query: 207 EGDVTGPAEEIEDYXXXXXXXXXXEVQTPKGRAKRNRTKPKWFNDHVM 64
GDV E + E K +AKR PK+ +D V+
Sbjct: 1354 PGDVMDQDESL--------GLVPMEKPNAKDKAKRKIVPPKYLDDFVV 1393
>dbj|GAU45231.1| hypothetical protein TSUD_138030 [Trifolium subterraneum]
Length = 1474
Score = 659 bits (1699), Expect(2) = 0.0
Identities = 324/542 (59%), Positives = 396/542 (73%)
Frame = -2
Query: 2735 NAITIKDRFPIPAVDELLDELYGTTFFSKLDLRSGYHQIRMHSGDISKTAFRTHQGHYEF 2556
N++TI+DRFP+P +DELLDEL G ++FSKLDLR G+HQIRMH DI KTAFRTHQGHYE+
Sbjct: 599 NSLTIRDRFPMPTIDELLDELGGASWFSKLDLRQGFHQIRMHEDDIHKTAFRTHQGHYEY 658
Query: 2555 LVMPFGLCNAPSTFQATMNILFQPYLRQFVIVFFYDILVFSKSLQDHVYHLSIVFTVLRD 2376
VMPFGLCNAPSTFQATMN L QP+LR+FV VFF DILV+S +L+ H+ HL VF L
Sbjct: 659 RVMPFGLCNAPSTFQATMNTLLQPFLRRFVDVFFDDILVYSVNLELHLSHLEQVFHKLLT 718
Query: 2375 NQFFLKRSKCSFGQSSISYLGHIVSPHGVAPDPEKIEAMTNWPVPTTLKQLRGFLGLTGF 2196
QF+LK+SKC FGQ + YLGHIVS GV PDP KI+AM +WP P+++K LRGFLGLTGF
Sbjct: 719 GQFYLKQSKCQFGQRQLEYLGHIVSVKGVQPDPYKIQAMLDWPPPSSIKALRGFLGLTGF 778
Query: 2195 YRKFVSHYASIAAPLTELLKKDCFQWSDTAQSAFMALKDAMTRAPVLRLPNFAEDFCIDT 2016
YRKF+ Y IA PLT LL+KD F+WS AQ+AF LK AMT+AP L LP+F+ F I+T
Sbjct: 779 YRKFIKGYPGIATPLTALLRKDAFRWSSDAQTAFDKLKMAMTQAPTLALPDFSAPFDIET 838
Query: 2015 DASGVGMDAVLSQGGHPICYFSNKFCPKLLSASTYVRDLCAITSAVKKWRPYLLGRKFTT 1836
DASG M AVL HPI +FS FCPKL +STYVR+L AITSAVKKWR YLLG +FT
Sbjct: 839 DASGSAMGAVLMHNSHPIAFFSQPFCPKLQRSSTYVRELHAITSAVKKWRQYLLGHRFTI 898
Query: 1835 HTDQKSLRELMTQVVQTPEQQFYLAKLLGYSYEIVYKPGKQNSVADALSRIHEPPAICLG 1656
T+ KSL++L++QV+QTPEQ YL++LLGY Y I YK GK N VADALSR E P L
Sbjct: 899 FTNHKSLKDLLSQVIQTPEQHKYLSELLGYDYSIQYKAGKSNIVADALSRTTEGPGTHLS 958
Query: 1655 LTVPHCVFYDKITAVCQSDPNFIHLRSQVQQHPERYPDFQVINSMLFFKGKLYIPSDSPV 1476
L++PH +F D + Q+ P F L SQ+ ++P +P ++ + ++ +K ++++ S SP
Sbjct: 959 LSIPHFLFLDHLCQSLQNSPAFNKLLSQILENPSSFPHHKIHDGLIIYKNRIWLDSTSPF 1018
Query: 1475 KFTLMEEFHSSLVGGHSGITKTLGRLKDNVYWEGMSKDVADFVKACIICQQTKIPAHLPY 1296
L+EEFHS+ +GGH GITKTL RL+ N +WEGM + V DFV C CQQ K P
Sbjct: 1019 CHQLLEEFHSTPLGGHMGITKTLARLQTNFFWEGMRQSVQDFVTTCSTCQQIKTETKKPA 1078
Query: 1295 GLLQPLPIPTNIWEDISLDCIVGLPSFQNHTVILVIVDRLSKASHFGMLPSNFTAVKVAE 1116
LLQPLPIPT IWED+SLD I GLP +VILV+VDR SK H G LP+ FTA KVA
Sbjct: 1079 SLLQPLPIPTAIWEDLSLDFITGLPPSHGFSVILVVVDRFSKGVHLGALPTKFTAYKVAT 1138
Query: 1115 LF 1110
LF
Sbjct: 1139 LF 1140
Score = 275 bits (704), Expect(2) = 0.0
Identities = 153/312 (49%), Positives = 193/312 (61%), Gaps = 6/312 (1%)
Frame = -1
Query: 1104 MVSSVHGMPKSIVSDRDPIFMSKFWQELFRLSGTKLRMSSAYHPQSDGQTEIVNKALQQY 925
++ +HG P S+VSDRDPIF+S+FW+ELFRLSGTKLRM +QY
Sbjct: 1143 IICKLHGFPHSLVSDRDPIFISRFWKELFRLSGTKLRM-------------------KQY 1183
Query: 924 LRCFVHDQPRTWGKFLHWAEWHYNTSIHSAIGMSPYQAVFGKPPPTLQQYISGSSNIEAV 745
LRCFVH P W +LH AEW YNTS+HS+ G SP++ FGKPPP++ Q + GSS IEA+
Sbjct: 1184 LRCFVHKHPTQWFSYLHLAEWSYNTSVHSSTGFSPFEITFGKPPPSIPQDLMGSSPIEAI 1243
Query: 744 NSELLNRDTILEILRKKLLKAQETMKLHADKRRLPHPFKVGDLVFVKLRPHRQISVT*YR 565
+S L R ++ LR L K Q MK A K+R + V V+VKLRP+RQ S T
Sbjct: 1244 DSMLTTRQQLILKLRNILTKIQNRMKQFAYKKRRDLSYDVNSWVYVKLRPYRQTSATASA 1303
Query: 564 VQKLA-KRYGPYKILRAIGTVAFELQLPPGSKIHPIFHASQLKPCLG-TTVDTLELPPKA 391
KL+ K YGP+KI+ IG VA++L LPP SKIH +FH S LKP G T LPP +
Sbjct: 1304 YTKLSQKYYGPFKIIAKIGPVAYQLLLPPTSKIHLVFHCSLLKPHHGPITSSDPNLPPSS 1363
Query: 390 VDNMPILQPLAILAQQ----TVNNKRQLLVQWTGLLPEDATWEDEEAFKLSYPALNLEDK 223
++N PI+ PLAILA + T R +LVQW+GL PED +WE Y +LEDK
Sbjct: 1364 INNHPIITPLAILASKWDTSTDPPSRLVLVQWSGLSPEDTSWEPWFELSKDY---HLEDK 1420
Query: 222 VLSQGEGDVTGP 187
VL EGDV+ P
Sbjct: 1421 VLFPAEGDVSNP 1432
>gb|KYP55632.1| Transposon Ty3-I Gag-Pol polyprotein [Cajanus cajan]
Length = 934
Score = 608 bits (1568), Expect(2) = 0.0
Identities = 289/507 (57%), Positives = 369/507 (72%)
Frame = -2
Query: 2630 YHQIRMHSGDISKTAFRTHQGHYEFLVMPFGLCNAPSTFQATMNILFQPYLRQFVIVFFY 2451
+HQI M D SKTAFRTH GH+EF VMPFGLCN PSTFQATMN LF+P+LR+F+IVFF
Sbjct: 75 FHQILMKPSDSSKTAFRTHNGHFEFRVMPFGLCNPPSTFQATMNNLFRPHLRRFIIVFFD 134
Query: 2450 DILVFSKSLQDHVYHLSIVFTVLRDNQFFLKRSKCSFGQSSISYLGHIVSPHGVAPDPEK 2271
DILV+S +L+DH+ HL I F +L DN+F LK SKC GQ SI YLGH+VS GV PDP K
Sbjct: 135 DILVYSSTLEDHILHLEIAFKLLLDNKFHLKGSKCHIGQQSIQYLGHVVSAAGVTPDPIK 194
Query: 2270 IEAMTNWPVPTTLKQLRGFLGLTGFYRKFVSHYASIAAPLTELLKKDCFQWSDTAQSAFM 2091
++A+ +WP+P+ LK LRGFLGLTGFYR+FV YA+IA+ LT+LLKKD F W+D A AF
Sbjct: 195 VQAIIDWPIPSNLKSLRGFLGLTGFYRRFVKRYAAIASSLTDLLKKDSFLWTDHATVAFN 254
Query: 2090 ALKDAMTRAPVLRLPNFAEDFCIDTDASGVGMDAVLSQGGHPICYFSNKFCPKLLSASTY 1911
ALK A+T APVL LPNF F + TDASG GM AVLSQ GHPI +FS +FCPKL ++S Y
Sbjct: 255 ALKTAITSAPVLALPNFDSVFAVQTDASGTGMGAVLSQQGHPIAFFSKQFCPKLRNSSAY 314
Query: 1910 VRDLCAITSAVKKWRPYLLGRKFTTHTDQKSLRELMTQVVQTPEQQFYLAKLLGYSYEIV 1731
+R+LCAITSAV+KWR YLLGR F +T+Q+S+++L++Q TP+QQ YL KLLG+ +EI
Sbjct: 315 IRELCAITSAVQKWRQYLLGRHFIIYTNQQSIKDLLSQTALTPDQQSYLTKLLGFDFEIH 374
Query: 1730 YKPGKQNSVADALSRIHEPPAICLGLTVPHCVFYDKITAVCQSDPNFIHLRSQVQQHPER 1551
YKPG+ N+VADALSRI +++ F + D F+ L+ ++ Q P
Sbjct: 375 YKPGRSNTVADALSRILPETHSFFIISITQMDFLADLKRCLSRDNAFLDLKERLLQAPSS 434
Query: 1550 YPDFQVINSMLFFKGKLYIPSDSPVKFTLMEEFHSSLVGGHSGITKTLGRLKDNVYWEGM 1371
+PDF + ++ KGK+++P + L+ EFHS+ + GH G+T+TL +L+ N +WE M
Sbjct: 435 FPDFSIHQDLILHKGKIWLPRSCSMIQLLLHEFHSTPLAGHPGVTRTLAKLQANFFWENM 494
Query: 1370 SKDVADFVKACIICQQTKIPAHLPYGLLQPLPIPTNIWEDISLDCIVGLPSFQNHTVILV 1191
KDV FV C CQQTK+P P GLLQP+P P+ WED+SLD I+GLP +Q HT ILV
Sbjct: 495 RKDVLTFVAQCTTCQQTKVPTQRPLGLLQPIPPPSRCWEDLSLDFIIGLPPYQGHTTILV 554
Query: 1190 IVDRLSKASHFGMLPSNFTAVKVAELF 1110
+VDR SK +HFGMLP +FTA KVA+LF
Sbjct: 555 VVDRFSKGAHFGMLPRSFTAAKVADLF 581
Score = 323 bits (828), Expect(2) = 0.0
Identities = 170/353 (48%), Positives = 229/353 (64%), Gaps = 7/353 (1%)
Frame = -1
Query: 1104 MVSSVHGMPKSIVSDRDPIFMSKFWQELFRLSGTKLRMSSAYHPQSDGQTEIVNKALQQY 925
MV +HG+P+S++SDRDPIF+S+FW+ELFRLSGTKLRMS+AYHPQ+DGQTE+ NK LQQY
Sbjct: 584 MVCKLHGLPRSLISDRDPIFLSQFWRELFRLSGTKLRMSTAYHPQTDGQTEVTNKILQQY 643
Query: 924 LRCFVHDQPRTWGKFLHWAEWHYNTSIHSAIGMSPYQAVFGKPPPTLQQYISGSSNIEAV 745
LRCFVH +P WGK L WAEW +NTS++S+ G +P++ +FG+PPP++ Q ++ + A
Sbjct: 644 LRCFVHHRPSLWGKLLPWAEWCFNTSLNSSTGYTPFEVMFGRPPPSIPQILNTETTNAAA 703
Query: 744 NSELLNRDTILEILRKKLLKAQETMKLHADKRRLPHPFKVGDLVFVKLRPHRQISVT*YR 565
+ E+ +R+ I+ L LLKAQE MK AD R F VGD V+V+LRP RQ SVT
Sbjct: 704 HFEVHSREEIMTKLHSNLLKAQENMKHWADSHRRDLSFDVGDWVYVRLRPRRQSSVTGQY 763
Query: 564 VQKLAKR-YGPYKILRAIGTVAFELQLPPGSKIHPIFHASQLKPCLG--TTVDTLELPPK 394
+ KL KR +GP+++L IG VA+ L LPP +KIH +FH S L+P G + L LPP+
Sbjct: 764 LGKLQKRFFGPFRVLEKIGAVAYRLDLPPSAKIHNVFHISLLRPHQGPLPSPPPLNLPPE 823
Query: 393 AVDNMPILQPLAIL----AQQTVNNKRQLLVQWTGLLPEDATWEDEEAFKLSYPALNLED 226
DN PIL P+AIL + T N ++ +L+QW GL E+A+WE + + +LED
Sbjct: 824 IEDNQPILTPVAILNWKMSSDTPNPQQLVLIQWEGLPLEEASWEPWSQIQAQF---HLED 880
Query: 225 KVLSQGEGDVTGPAEEIEDYXXXXXXXXXXEVQTPKGRAKRNRTKPKWFNDHV 67
KV GEGDV P + + E R +R R KP W D+V
Sbjct: 881 KVTLDGEGDVR-PITDTTNVEPSIENQHAQESLETGTRTQRIRNKPFWLKDYV 932
>gb|PNX91810.1| transposon Ty3 gag-pol polyprotein [Trifolium pratense]
Length = 843
Score = 592 bits (1525), Expect(2) = 0.0
Identities = 288/518 (55%), Positives = 365/518 (70%)
Frame = -2
Query: 2615 MHSGDISKTAFRTHQGHYEFLVMPFGLCNAPSTFQATMNILFQPYLRQFVIVFFYDILVF 2436
MH DI KTAFRTHQGHYE+ VMPFGLCNAPSTFQA MN L QP+LR+FV VFF DILV+
Sbjct: 1 MHEEDIPKTAFRTHQGHYEYRVMPFGLCNAPSTFQAAMNDLLQPFLRRFVAVFFDDILVY 60
Query: 2435 SKSLQDHVYHLSIVFTVLRDNQFFLKRSKCSFGQSSISYLGHIVSPHGVAPDPEKIEAMT 2256
S SL+DH HL+ VF+ L QF+LK+SKC Q + YLGHI+S GV DP KI AM
Sbjct: 61 SASLEDHAQHLAQVFSTLLSAQFYLKQSKCLLAQRKLEYLGHIISGKGVQVDPSKISAMV 120
Query: 2255 NWPVPTTLKQLRGFLGLTGFYRKFVSHYASIAAPLTELLKKDCFQWSDTAQSAFMALKDA 2076
+WPVPT++ LRGFLGLTGFYRKF+ +YA+IA PLT LL+KD F W++ AQ AF +LK A
Sbjct: 121 DWPVPTSITSLRGFLGLTGFYRKFIRNYAAIATPLTRLLRKDAFNWTEEAQLAFNSLKQA 180
Query: 2075 MTRAPVLRLPNFAEDFCIDTDASGVGMDAVLSQGGHPICYFSNKFCPKLLSASTYVRDLC 1896
MT+AP+L PNF F ++TDASG+ M AVL Q HPI +FS FC +LL++STYVR+L
Sbjct: 181 MTKAPLLASPNFNIPFILETDASGIAMGAVLMQNNHPIAFFSKPFCQRLLNSSTYVRELH 240
Query: 1895 AITSAVKKWRPYLLGRKFTTHTDQKSLRELMTQVVQTPEQQFYLAKLLGYSYEIVYKPGK 1716
AIT+AVKKWR YLLG F TD KSL++L++QV+QTPEQQ YL+KLLG+ + I YK G
Sbjct: 241 AITTAVKKWRQYLLGHHFIIFTDHKSLKQLISQVIQTPEQQVYLSKLLGFDFTIQYKAGS 300
Query: 1715 QNSVADALSRIHEPPAICLGLTVPHCVFYDKITAVCQSDPNFIHLRSQVQQHPERYPDFQ 1536
N VADALSRI P A CL LTVPH VF +++ + + F L+ + Q P Y D +
Sbjct: 301 TNVVADALSRI-TPSASCLLLTVPHFVFLNELKSQLSTTQEFQQLKLAIAQQPASYSDNE 359
Query: 1535 VINSMLFFKGKLYIPSDSPVKFTLMEEFHSSLVGGHSGITKTLGRLKDNVYWEGMSKDVA 1356
++FFK K+++P D +K ++ EFH+S + GH G+ KT RL+ N +W+GM +D+
Sbjct: 360 EHQDLIFFKKKIWLPRDFSLKDRILHEFHNSPISGHMGVDKTFHRLQANFFWQGMRQDIR 419
Query: 1355 DFVKACIICQQTKIPAHLPYGLLQPLPIPTNIWEDISLDCIVGLPSFQNHTVILVIVDRL 1176
F+ C +CQ TK P GLLQPLP+P+ IWED+SLD I GLP +T I V+VDR
Sbjct: 420 SFIAKCSVCQSTKYETKKPAGLLQPLPVPSGIWEDLSLDFITGLPPSHGYTTIFVVVDRF 479
Query: 1175 SKASHFGMLPSNFTAVKVAELFAKWSVLSTVCQRVSCP 1062
SK +HF LP+ +TA KVA+LF L T+C+ P
Sbjct: 480 SKGAHFSALPTTYTAYKVAQLF-----LDTICKHHGMP 512
Score = 311 bits (797), Expect(2) = 0.0
Identities = 162/301 (53%), Positives = 211/301 (70%), Gaps = 6/301 (1%)
Frame = -1
Query: 1089 HGMPKSIVSDRDPIFMSKFWQELFRLSGTKLRMSSAYHPQSDGQTEIVNKALQQYLRCFV 910
HGMP+S+VSDRDP+F+S+FW+ELF+LSGT+LRMS+AYHP++DGQTE++N++L+QYLR FV
Sbjct: 509 HGMPRSLVSDRDPVFISQFWRELFKLSGTQLRMSTAYHPETDGQTEVLNRSLEQYLRAFV 568
Query: 909 HDQPRTWGKFLHWAEWHYNTSIHSAIGMSPYQAVFGKPPPTLQQYISGSSNIEAVNSELL 730
H +P W FL AEW YNTS HSA G SP+ V+GK P ++ QY+ G+S IEAV+S L
Sbjct: 569 HHKPSLWFTFLSLAEWSYNTSKHSATGYSPFHVVYGKDPVSIPQYVLGTSPIEAVDSMLA 628
Query: 729 NRDTILEILRKKLLKAQETMKLHADKRRLPHPFKVGDLVFVKLRPHRQISVT*YRVQKLA 550
R L+ LR+KLLK Q MK ADK+R F VGD V++KLRP+RQ S+T KL+
Sbjct: 629 ERQAFLQFLRRKLLKVQSHMKEIADKKRRHVEFNVGDFVYLKLRPYRQRSITLASYNKLS 688
Query: 549 KRY-GPYKILRAIGTVAFELQLPPGSKIHPIFHASQLKPCLG-TTVDTLELPPKAVDNMP 376
KRY GPYKIL+ IG VA++L LP SKIHP+FH S LK G ELPP +D+ P
Sbjct: 689 KRYFGPYKILQKIGPVAYKLDLPSTSKIHPVFHCSLLKLHQGDLPAAHAELPPSTIDHQP 748
Query: 375 ILQPLAILAQQ----TVNNKRQLLVQWTGLLPEDATWEDEEAFKLSYPALNLEDKVLSQG 208
I++PLAI+ + T R +LVQW GL E+ +WE + + +Y +LEDKV G
Sbjct: 749 IIEPLAIVDTKMDTATDPPTRMVLVQWLGLPLEETSWETWDDLQATY---HLEDKVTFPG 805
Query: 207 E 205
E
Sbjct: 806 E 806
>gb|PNY17453.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
Length = 1535
Score = 589 bits (1518), Expect(2) = 0.0
Identities = 288/544 (52%), Positives = 386/544 (70%), Gaps = 2/544 (0%)
Frame = -2
Query: 2735 NAITIKDRFPIPAVDELLDELYGTTFFSKLDLRSGYHQIRMHSGDISKTAFRTHQGHYEF 2556
NAIT+KD FPIP VDELLDEL+G +FSKLDLRSGYHQI + D KTAFRTHQGHYE+
Sbjct: 634 NAITVKDSFPIPTVDELLDELFGAKYFSKLDLRSGYHQILLQPEDRHKTAFRTHQGHYEW 693
Query: 2555 LVMPFGLCNAPSTFQATMNILFQPYLRQFVIVFFYDILVFSKSLQDHVYHLSIVFTVLRD 2376
LVMPFGL NAP+TFQ+ MN +FQ LR++V+VFF DIL++S + QDH+ HL +V VL++
Sbjct: 694 LVMPFGLTNAPATFQSLMNHIFQHALRKYVLVFFDDILIYSNTWQDHLQHLDVVLRVLQE 753
Query: 2375 NQFFLKRSKCSFGQSSISYLGHIVSPHGVAPDPEKIEAMTNWPVPTTLKQLRGFLGLTGF 2196
N ++K SKC+FG I YLGH+V+ GV+ D +K++A+ NWP P +KQLRGFLGLTG+
Sbjct: 754 NILYVKLSKCNFGVLEIEYLGHVVTGQGVSMDKDKVQAVLNWPTPMNVKQLRGFLGLTGY 813
Query: 2195 YRKFVSHYASIAAPLTELLKKDCFQWSDTAQSAFMALKDAMTRAPVLRLPNFAEDFCIDT 2016
YR+F+ YA IA+PLT+LLKK+ +QW+ A+ AF LK+A+T APVL LPNF F ++T
Sbjct: 814 YRRFIKSYAKIASPLTDLLKKEAYQWNAQAEEAFKQLKNAITTAPVLALPNFKLPFILET 873
Query: 2015 DASGVGMDAVLSQGGHPICYFSNKFCPKLLSASTYVRDLCAITSAVKKWRPYLLGRKFTT 1836
DASGVG+ AVL Q GHPI YFS K P+ S Y R++ AI A+ K+R YLLG KF
Sbjct: 874 DASGVGIGAVLHQQGHPIAYFSKKLVPRNQKKSAYFREMLAIAEAIAKFRHYLLGHKFII 933
Query: 1835 HTDQKSLRELMTQVVQTPEQQFYLAKLLGYSYEIVYKPGKQNSVADALSRIHEPPAICLG 1656
TDQKSLR LM Q +QTP+QQ +L K LGY + I YKPGK+N ADALSRI + L
Sbjct: 934 RTDQKSLRSLMEQSLQTPDQQEWLHKFLGYDFTIEYKPGKENMAADALSRI-----MTLS 988
Query: 1655 LTVPHCVFYDKITAVCQSDPNF--IHLRSQVQQHPERYPDFQVINSMLFFKGKLYIPSDS 1482
+ P C F ++I Q+D I ++ + P +Y + + +L++K +L IP D+
Sbjct: 989 WSEPKCQFIEQIRVALQNDNQMREILMKCNAGKAPVQY---SMRDGLLYWKQRLVIPKDN 1045
Query: 1481 PVKFTLMEEFHSSLVGGHSGITKTLGRLKDNVYWEGMSKDVADFVKACIICQQTKIPAHL 1302
+ + ++ EFH+S +GGH+GIT+T+ R+K YW M +D+ D+V+ C++CQQ K
Sbjct: 1046 DLLYKVLFEFHTSPIGGHAGITRTMARIKSQFYWPDMKQDIIDYVQKCMVCQQAKTTNTS 1105
Query: 1301 PYGLLQPLPIPTNIWEDISLDCIVGLPSFQNHTVILVIVDRLSKASHFGMLPSNFTAVKV 1122
P GLLQPLPIP+ +WEDI++D I GLP +T I+V+VDRL+K +HF + S++T+ V
Sbjct: 1106 PAGLLQPLPIPSQVWEDIAMDFITGLPLSSGYTTIMVVVDRLTKYAHFIPMKSDYTSKSV 1165
Query: 1121 AELF 1110
AE F
Sbjct: 1166 AESF 1169
Score = 313 bits (802), Expect(2) = 0.0
Identities = 158/311 (50%), Positives = 213/311 (68%), Gaps = 6/311 (1%)
Frame = -1
Query: 1101 VSSVHGMPKSIVSDRDPIFMSKFWQELFRLSGTKLRMSSAYHPQSDGQTEIVNKALQQYL 922
+ +HGMPKSIVSDRD +F S FWQ+LF+L GT L MSSAYHPQSDGQTE++NKAL+ +L
Sbjct: 1173 IVKLHGMPKSIVSDRDKVFTSAFWQQLFKLQGTSLAMSSAYHPQSDGQTEVLNKALELFL 1232
Query: 921 RCFVHDQPRTWGKFLHWAEWHYNTSIHSAIGMSPYQAVFGKPPPTLQQYISGSSNIEAVN 742
RCF P++W K L WAE+ YNT+ ++IGM+P++A++G+ PP L +Y + ++ A+
Sbjct: 1233 RCFTFHNPKSWSKVLSWAEYWYNTAFQTSIGMTPFKALYGRDPPYLTKYEAQVTDPPALQ 1292
Query: 741 SELLNRDTILEILRKKLLKAQETMKLHADKRRLPHPFKVGDLVFVKLRPHRQISVT*YRV 562
EL+ RD IL+ L+ L +AQ+ MK ADK R F+VGDLV VKL+P+RQ SV +
Sbjct: 1293 EELMERDKILQQLKSNLDRAQQYMKKQADKHRKDVTFQVGDLVLVKLQPYRQQSVALRKN 1352
Query: 561 QKLAKRY-GPYKILRAIGTVAFELQLPPGSKIHPIFHASQLKPCLGTTVDT-LELPPKAV 388
QKL RY GP++I+ IG VA++L+LP +KIHP+FH SQLKP G D L LP
Sbjct: 1353 QKLGMRYFGPFEIIACIGAVAYKLKLPDNAKIHPVFHVSQLKPFKGAASDQYLPLPLTMT 1412
Query: 387 DNMPILQPLAILAQQTV----NNKRQLLVQWTGLLPEDATWEDEEAFKLSYPALNLEDKV 220
+ PI+QP+A+L +T+ Q+LVQW +ATWED + +L +P LNLEDKV
Sbjct: 1413 ETGPIMQPIAVLQARTIMRGTQRVHQILVQWDTNAEAEATWEDFDDLQLKFPTLNLEDKV 1472
Query: 219 LSQGEGDVTGP 187
+ GEG V P
Sbjct: 1473 VFNGEGIVMRP 1483
>dbj|GAU25204.1| hypothetical protein TSUD_151040 [Trifolium subterraneum]
Length = 1512
Score = 592 bits (1527), Expect(2) = 0.0
Identities = 290/542 (53%), Positives = 386/542 (71%)
Frame = -2
Query: 2735 NAITIKDRFPIPAVDELLDELYGTTFFSKLDLRSGYHQIRMHSGDISKTAFRTHQGHYEF 2556
NAIT+KD FPIP VDELLDEL+G FSKLDLRSGYHQI + D KTAFRTHQGHYE+
Sbjct: 633 NAITVKDSFPIPTVDELLDELFGAKHFSKLDLRSGYHQILLQPEDRYKTAFRTHQGHYEW 692
Query: 2555 LVMPFGLCNAPSTFQATMNILFQPYLRQFVIVFFYDILVFSKSLQDHVYHLSIVFTVLRD 2376
LVMPFGL NAP+TFQ+ MN +FQ LR++V+VFF DILV+SK+ Q+H+ HL+ V VL+D
Sbjct: 693 LVMPFGLTNAPATFQSLMNTIFQNVLRKYVLVFFDDILVYSKTWQEHLKHLAAVLQVLQD 752
Query: 2375 NQFFLKRSKCSFGQSSISYLGHIVSPHGVAPDPEKIEAMTNWPVPTTLKQLRGFLGLTGF 2196
N+ F+K SKCSFG S I YLGH+V+ GV+ D EKI+A+ +WP P +KQLRGFL LTG+
Sbjct: 753 NELFVKLSKCSFGVSEIEYLGHVVNGQGVSMDKEKIQAVLDWPPPKNIKQLRGFLCLTGY 812
Query: 2195 YRKFVSHYASIAAPLTELLKKDCFQWSDTAQSAFMALKDAMTRAPVLRLPNFAEDFCIDT 2016
YR+F+ YA IA+PLT+LLKK+ + W+ A++AF LK+A+T APVL LPNF + F ++T
Sbjct: 813 YRRFIQSYAKIASPLTDLLKKEAYVWTTQAKAAFQQLKNAITSAPVLALPNFTKTFILET 872
Query: 2015 DASGVGMDAVLSQGGHPICYFSNKFCPKLLSASTYVRDLCAITSAVKKWRPYLLGRKFTT 1836
DASGVG+ AVL Q GHPI YFS K P+ S Y R++ AI A+ K+R YLLG KF
Sbjct: 873 DASGVGIGAVLHQEGHPIAYFSKKLVPRNQKKSAYFREMLAIAEAIAKFRHYLLGHKFII 932
Query: 1835 HTDQKSLRELMTQVVQTPEQQFYLAKLLGYSYEIVYKPGKQNSVADALSRIHEPPAICLG 1656
TDQKSLR LM Q +QTP+QQ +L + LGY + I YKPGK N VADALSR+ + L
Sbjct: 933 RTDQKSLRNLMEQTLQTPDQQEWLHRFLGYDFSIEYKPGKDNVVADALSRV-----MTLA 987
Query: 1655 LTVPHCVFYDKITAVCQSDPNFIHLRSQVQQHPERYPDFQVINSMLFFKGKLYIPSDSPV 1476
+ P +I A+ + DP + +R + QH + + + + +LF+K ++ IP D +
Sbjct: 988 WSEPQFRLLHQIKAIQKQDPTLVKIRMECAQHSQPGSHYTIKDDLLFWKQRIVIPHDGAL 1047
Query: 1475 KFTLMEEFHSSLVGGHSGITKTLGRLKDNVYWEGMSKDVADFVKACIICQQTKIPAHLPY 1296
++ E H+S +GGH+GIT+T+ R+K YW M KD+ ++V+ C ICQ+ K LP
Sbjct: 1048 IQQVLYELHTSPLGGHAGITRTVARVKAQFYWSDMKKDIVEYVQNCEICQKAKTANTLPA 1107
Query: 1295 GLLQPLPIPTNIWEDISLDCIVGLPSFQNHTVILVIVDRLSKASHFGMLPSNFTAVKVAE 1116
GLLQPLPIP+ +WED+++D I GLP +TVILV++DRL+K +HF L +++T+ VAE
Sbjct: 1108 GLLQPLPIPSQVWEDVAMDFITGLPLSHGYTVILVVIDRLTKYAHFIPLKTDYTSKIVAE 1167
Query: 1115 LF 1110
F
Sbjct: 1168 AF 1169
Score = 301 bits (770), Expect(2) = 0.0
Identities = 149/313 (47%), Positives = 214/313 (68%), Gaps = 6/313 (1%)
Frame = -1
Query: 1101 VSSVHGMPKSIVSDRDPIFMSKFWQELFRLSGTKLRMSSAYHPQSDGQTEIVNKALQQYL 922
+ +HGMPKSIVSDRD +F S FWQ+LF+L GT L MSSAYHPQSDGQ+E++N+ L+ +L
Sbjct: 1173 IVKLHGMPKSIVSDRDKVFTSNFWQQLFKLQGTSLAMSSAYHPQSDGQSEVLNRTLELFL 1232
Query: 921 RCFVHDQPRTWGKFLHWAEWHYNTSIHSAIGMSPYQAVFGKPPPTLQQYISGSSNIEAVN 742
RCF + P+ W K L W+E+ YNT+ ++IGM+P++A++G+ PPTL +Y + + + A+
Sbjct: 1233 RCFTFNNPKAWYKALSWSEFWYNTAFQTSIGMTPFKALYGRDPPTLVRYEAQAGDPPALQ 1292
Query: 741 SELLNRDTILEILRKKLLKAQETMKLHADKRRLPHPFKVGDLVFVKLRPHRQISVT*YRV 562
EL+ RD +L+ L+ L +AQ+ MK ADK R +VGDLV VKL+P+RQ S+ +
Sbjct: 1293 EELMGRDKLLQQLKSNLERAQQYMKRQADKHRRDIKLQVGDLVLVKLQPYRQQSLALRKN 1352
Query: 561 QKLAKRY-GPYKILRAIGTVAFELQLPPGSKIHPIFHASQLKPCLGTTVD-TLELPPKAV 388
QKL RY GP++IL +G VA++L+LP +KIHP+FH SQLKP G + D +L LP
Sbjct: 1353 QKLGMRYFGPFEILAKVGEVAYKLKLPDHAKIHPVFHISQLKPFKGISQDQSLPLPLTMS 1412
Query: 387 DNMPILQPLAILAQQT----VNNKRQLLVQWTGLLPEDATWEDEEAFKLSYPALNLEDKV 220
D P++QP+A+LA +T + Q+L+QW +ATWE+ + +P NLEDKV
Sbjct: 1413 DTGPLIQPIAVLAARTILKGIQKVHQVLIQWDQYPEAEATWEEVTNLQSKFPYFNLEDKV 1472
Query: 219 LSQGEGDVTGPAE 181
+ +G+G V P E
Sbjct: 1473 VFKGDGIVMSPKE 1485
>gb|AAO23078.1| polyprotein [Glycine max]
Length = 1552
Score = 580 bits (1494), Expect(2) = 0.0
Identities = 283/542 (52%), Positives = 383/542 (70%)
Frame = -2
Query: 2735 NAITIKDRFPIPAVDELLDELYGTTFFSKLDLRSGYHQIRMHSGDISKTAFRTHQGHYEF 2556
NAIT+KD FP+P VDELLDEL+G +FSKLDLRSGYHQI + D KTAFRTH GHYE+
Sbjct: 657 NAITVKDSFPMPTVDELLDELHGAQYFSKLDLRSGYHQILVQPEDREKTAFRTHHGHYEW 716
Query: 2555 LVMPFGLCNAPSTFQATMNILFQPYLRQFVIVFFYDILVFSKSLQDHVYHLSIVFTVLRD 2376
LVMPFGL NAP+TFQ MN +FQ LR+FV+VFF DIL++S S +DH+ HL V L+
Sbjct: 717 LVMPFGLTNAPATFQCLMNKIFQFALRKFVLVFFDDILIYSASWKDHLKHLESVLQTLKQ 776
Query: 2375 NQFFLKRSKCSFGQSSISYLGHIVSPHGVAPDPEKIEAMTNWPVPTTLKQLRGFLGLTGF 2196
+Q F + SKCSFG + + YLGH VS GV+ + K++A+ +WP P +KQLRGFLGLTG+
Sbjct: 777 HQLFARLSKCSFGDTEVDYLGHKVSGLGVSMENTKVQAVLDWPTPNNVKQLRGFLGLTGY 836
Query: 2195 YRKFVSHYASIAAPLTELLKKDCFQWSDTAQSAFMALKDAMTRAPVLRLPNFAEDFCIDT 2016
YR+F+ YA+IA PLT+LL+KD F W++ A++AF+ LK AMT APVL LP+F++ F ++T
Sbjct: 837 YRRFIKSYANIAGPLTDLLQKDSFLWNNEAEAAFVKLKKAMTEAPVLSLPDFSQPFILET 896
Query: 2015 DASGVGMDAVLSQGGHPICYFSNKFCPKLLSASTYVRDLCAITSAVKKWRPYLLGRKFTT 1836
DASG+G+ AVL Q GHPI YFS K P++ S Y R+L AIT A+ K+R YLLG KF
Sbjct: 897 DASGIGVGAVLGQNGHPIAYFSKKLAPRMQKQSAYTRELLAITEALSKFRHYLLGNKFII 956
Query: 1835 HTDQKSLRELMTQVVQTPEQQFYLAKLLGYSYEIVYKPGKQNSVADALSRIHEPPAICLG 1656
TDQ+SL+ LM Q +QTPEQQ +L K LGY ++I YKPGK N ADALSR+ L
Sbjct: 957 RTDQRSLKSLMDQSLQTPEQQAWLHKFLGYDFKIEYKPGKDNQAADALSRM-----FMLA 1011
Query: 1655 LTVPHCVFYDKITAVCQSDPNFIHLRSQVQQHPERYPDFQVINSMLFFKGKLYIPSDSPV 1476
+ PH +F +++ A SDP+ L +Q + + V +L++K ++ IP++ +
Sbjct: 1012 WSEPHSIFLEELRARLISDPHLKQLMETYKQGADA-SHYTVREGLLYWKDRVVIPAEEEI 1070
Query: 1475 KFTLMEEFHSSLVGGHSGITKTLGRLKDNVYWEGMSKDVADFVKACIICQQTKIPAHLPY 1296
+++E+HSS +GGH+GIT+TL RLK YW M +DV +++ C+ICQQ K LP
Sbjct: 1071 VNKILQEYHSSPIGGHAGITRTLARLKAQFYWPKMQEDVKAYIQKCLICQQAKSNNTLPA 1130
Query: 1295 GLLQPLPIPTNIWEDISLDCIVGLPSFQNHTVILVIVDRLSKASHFGMLPSNFTAVKVAE 1116
GLLQPLPIP +WED+++D I GLP+ +VI+V++DRL+K +HF L +++ + VAE
Sbjct: 1131 GLLQPLPIPQQVWEDVAMDFITGLPNSFGLSVIMVVIDRLTKYAHFIPLKADYNSKVVAE 1190
Query: 1115 LF 1110
F
Sbjct: 1191 AF 1192
Score = 313 bits (801), Expect(2) = 0.0
Identities = 155/309 (50%), Positives = 213/309 (68%), Gaps = 6/309 (1%)
Frame = -1
Query: 1101 VSSVHGMPKSIVSDRDPIFMSKFWQELFRLSGTKLRMSSAYHPQSDGQTEIVNKALQQYL 922
+ +HG+P+SIVSDRD +F S FWQ LF+L GT L MSSAYHPQSDGQ+E++NK L+ YL
Sbjct: 1196 IVKLHGIPRSIVSDRDRVFTSTFWQHLFKLQGTTLAMSSAYHPQSDGQSEVLNKCLEMYL 1255
Query: 921 RCFVHDQPRTWGKFLHWAEWHYNTSIHSAIGMSPYQAVFGKPPPTLQQYISGSSNIEAVN 742
RCF ++ P+ W K L WAE+ YNT+ H ++GM+P++A++G+ PPTL + + V
Sbjct: 1256 RCFTYEHPKGWVKALPWAEFWYNTAYHMSLGMTPFRALYGREPPTLTRQACSIDDPAEVR 1315
Query: 741 SELLNRDTILEILRKKLLKAQETMKLHADKRRLPHPFKVGDLVFVKLRPHRQISVT*YRV 562
+L +RD +L L+ L +AQ+ MK ADK+RL F++GD V VKL+P+RQ S +
Sbjct: 1316 EQLTDRDALLAKLKINLTRAQQVMKRQADKKRLDVSFQIGDEVLVKLQPYRQHSAVLRKN 1375
Query: 561 QKLAKRY-GPYKILRAIGTVAFELQLPPGSKIHPIFHASQLKPCLGTTVDT-LELPPKAV 388
QKL+ RY GP+K+L IG VA++L+LP ++IHP+FH SQLKP GT D L LP
Sbjct: 1376 QKLSMRYFGPFKVLAKIGDVAYKLELPSAARIHPVFHVSQLKPFNGTAQDPYLPLPLTVT 1435
Query: 387 DNMPILQPLAILAQQTV----NNKRQLLVQWTGLLPEDATWEDEEAFKLSYPALNLEDKV 220
+ P++QP+ ILA + + N Q+LVQW L ++ATWED E K SYP NLEDKV
Sbjct: 1436 EMGPVMQPVKILASRIIIRGHNQIEQILVQWENGLQDEATWEDIEDIKASYPTFNLEDKV 1495
Query: 219 LSQGEGDVT 193
+ +GEG+VT
Sbjct: 1496 VFKGEGNVT 1504
>gb|PNY17337.1| retrotransposon-related protein [Trifolium pratense]
Length = 1514
Score = 569 bits (1466), Expect(2) = 0.0
Identities = 294/547 (53%), Positives = 359/547 (65%)
Frame = -2
Query: 2735 NAITIKDRFPIPAVDELLDELYGTTFFSKLDLRSGYHQIRMHSGDISKTAFRTHQGHYEF 2556
N++TIKDRFPIP +DELLDEL G F KLDLR+GYHQIRM S DI KTAFRTH GHYEF
Sbjct: 637 NSLTIKDRFPIPTIDELLDELGGAVVFLKLDLRAGYHQIRMDSRDIHKTAFRTHNGHYEF 696
Query: 2555 LVMPFGLCNAPSTFQATMNILFQPYLRQFVIVFFYDILVFSKSLQDHVYHLSIVFTVLRD 2376
+VMPFGL NAPSTFQ+ MN +F+P+LR+FV VFF DIL++S ++ +HV HL V + D
Sbjct: 697 VVMPFGLTNAPSTFQSAMNDVFRPFLRRFVTVFFDDILIYSHNIHEHVIHLQQVLQQMED 756
Query: 2375 NQFFLKRSKCSFGQSSISYLGHIVSPHGVAPDPEKIEAMTNWPVPTTLKQLRGFLGLTGF 2196
QFF K SKC F Q + YLGHIVS GV DP K+ AM NWP+P +KQLRGFLGLTG+
Sbjct: 757 KQFFAKASKCQFFQQQVEYLGHIVSNEGVRADPSKVSAMHNWPIPKNVKQLRGFLGLTGY 816
Query: 2195 YRKFVSHYASIAAPLTELLKKDCFQWSDTAQSAFMALKDAMTRAPVLRLPNFAEDFCIDT 2016
Y +FV+HYA+IAAPLTELLKKD F WS AQ AF LK MT+ PVL LP+F++ F ++T
Sbjct: 817 YHRFVAHYATIAAPLTELLKKDNFVWSADAQKAFEMLKQTMTKTPVLHLPDFSKQFVVET 876
Query: 2015 DASGVGMDAVLSQGGHPICYFSNKFCPKLLSASTYVRDLCAITSAVKKWRPYLLGRKFTT 1836
DAS VG+ VL Q HPI +FS K PK+ AS Y+R+L AI AV KWR YLLGR F
Sbjct: 877 DASNVGVGGVLMQDNHPIAFFSKKLGPKMRGASAYLRELRAIVEAVTKWRQYLLGRHFLV 936
Query: 1835 HTDQKSLRELMTQVVQTPEQQFYLAKLLGYSYEIVYKPGKQNSVADALSRIHEPPAICLG 1656
TD KSLREL+TQVVQTP+Q YL KLLG+S+ I YK G N+VADALSR E L
Sbjct: 937 RTDHKSLRELLTQVVQTPDQHHYLRKLLGFSFTIEYKAGITNTVADALSRQFEEELSTLQ 996
Query: 1655 LTVPHCVFYDKITAVCQSDPNFIHLRSQVQQHPERYPDFQVINSMLFFKGKLYIPSDSPV 1476
L + F + Q++Q R+ D ++ + D
Sbjct: 997 LALSSGQF---------------DILQQLRQENSRFDDLLALHKQV---------HDGTG 1032
Query: 1475 KFTLMEEFHSSLVGGHSGITKTLGRLKDNVYWEGMSKDVADFVKACIICQQTKIPAHLPY 1296
K E + GH+GI +TL RL N W+GM DV FV C +CQ K P
Sbjct: 1033 K-----ELGYEVKDGHAGIDRTLRRLSANFVWDGMRHDVKTFVSQCFVCQTVKYSTTPPN 1087
Query: 1295 GLLQPLPIPTNIWEDISLDCIVGLPSFQNHTVILVIVDRLSKASHFGMLPSNFTAVKVAE 1116
GLLQPL +P +WED++LD IVGLP + +T ILV++DR +K +HFG LP++ TA KVAE
Sbjct: 1088 GLLQPLELPERVWEDVALDFIVGLPMSKGNTSILVVIDRFTKYAHFGALPTHHTATKVAE 1147
Query: 1115 LFAKWSV 1095
LF V
Sbjct: 1148 LFTNMIV 1154
Score = 322 bits (826), Expect(2) = 0.0
Identities = 173/359 (48%), Positives = 229/359 (63%), Gaps = 12/359 (3%)
Frame = -1
Query: 1104 MVSSVHGMPKSIVSDRDPIFMSKFWQELFRLSGTKLRMSSAYHPQSDGQTEIVNKALQQY 925
M+ +HG+P++IVSDRDPIF S+FWQELF+L GTKL+MSS+YHPQ+DGQTE+ N+ ++QY
Sbjct: 1152 MIVKLHGIPRTIVSDRDPIFTSRFWQELFKLMGTKLKMSSSYHPQTDGQTEVTNRYVEQY 1211
Query: 924 LRCFVHDQPRTWGKFLHWAEWHYNTSIHSAIGMSPYQAVFGKPPPTLQQYISGSSNIEAV 745
LR F D P+ WG+FL WAE+HYNTS HSAI M+P+QAV+G+PPPT+ Y+ G+S I+AV
Sbjct: 1212 LRAFSADYPKKWGRFLSWAEYHYNTSHHSAINMTPFQAVYGRPPPTIPHYVRGNSKIQAV 1271
Query: 744 NSELLNRDTILEILRKKLLKAQETMKLHADKRRLPHPFKVGDLVFVKLRPHRQISVT*YR 565
+ +LL RD IL+ L+ L +AQ M A+K+R F VGDLV VKL+P+RQ +V
Sbjct: 1272 DGDLLTRDEILQHLKHNLTRAQHRMVQQANKKRTDVQFAVGDLVLVKLQPYRQATVAVRL 1331
Query: 564 VQKLAKRY-GPYKILRAIGTVAFELQLPPGSKIHPIFHASQLKPCLGTTVDTL-ELPPKA 391
K+A+RY GP+ IL +GTVA++L LP S+IHP FH S L+ G D LP +
Sbjct: 1332 NHKIARRYFGPFPILERVGTVAYKLGLPSESRIHPTFHVSLLRAFKGAVGDKFYPLPEVS 1391
Query: 390 VDNMPILQPLAILAQQTVNN----KRQLLVQWTGLLPEDATWEDEEAFKLSYPALNLEDK 223
V N P+L P AILA + V+ ++Q+LVQW+ EDATWED + F Y +LEDK
Sbjct: 1392 VANRPLLHPTAILAGRIVSQQGVPRKQILVQWSHNQQEDATWEDLQIFTDLYGVPDLEDK 1451
Query: 222 VLSQ-GEGDVTGPAEEIEDYXXXXXXXXXXEVQTPKGRAK-----RNRTKPKWFNDHVM 64
V+ Q G D E D K + R R KP W D +M
Sbjct: 1452 VIFQEGSSDSFSHKEVPLDTNTTQQLMKEWVSPIDKPNQQDILEPRQRKKPVWTRDFIM 1510