BLASTX nr result
ID: Astragalus22_contig00012486
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Astragalus22_contig00012486
(2080 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO23078.1| polyprotein [Glycine max] 587 0.0
dbj|GAU11620.1| hypothetical protein TSUD_346120 [Trifolium subt... 579 0.0
gb|PNX98514.1| Ty3/gypsy retrotransposon protein, partial [Trifo... 581 0.0
gb|PNX92431.1| Ty3/gypsy retrotransposon protein, partial [Trifo... 566 0.0
gb|PNX96484.1| Ty3/gypsy retrotransposon protein [Trifolium prat... 568 0.0
gb|PNX73110.1| Ty3/gypsy retrotransposon protein, partial [Trifo... 566 0.0
gb|PNY17453.1| Ty3/gypsy retrotransposon protein [Trifolium prat... 563 0.0
dbj|GAU27453.1| hypothetical protein TSUD_161390 [Trifolium subt... 568 0.0
dbj|GAU23504.1| hypothetical protein TSUD_39830 [Trifolium subte... 532 0.0
gb|PNY16560.1| Ty3/gypsy retrotransposon protein [Trifolium prat... 548 0.0
dbj|GAU25204.1| hypothetical protein TSUD_151040 [Trifolium subt... 556 0.0
dbj|GAU29525.1| hypothetical protein TSUD_115470 [Trifolium subt... 540 0.0
gb|PNX92398.1| Ty3/gypsy retrotransposon protein [Trifolium prat... 515 0.0
gb|PNX98300.1| Ty3/gypsy retrotransposon protein, partial [Trifo... 508 0.0
dbj|GAU12540.1| hypothetical protein TSUD_182540 [Trifolium subt... 561 0.0
gb|KYP39589.1| Transposon Ty3-G Gag-Pol polyprotein [Cajanus cajan] 504 0.0
dbj|GAU44596.1| hypothetical protein TSUD_187860 [Trifolium subt... 499 0.0
gb|PNX93203.1| hypothetical protein L195_g016354 [Trifolium prat... 542 0.0
dbj|GAU19157.1| hypothetical protein TSUD_79800 [Trifolium subte... 558 0.0
dbj|GAU35592.1| hypothetical protein TSUD_295280 [Trifolium subt... 481 0.0
>gb|AAO23078.1| polyprotein [Glycine max]
Length = 1552
Score = 587 bits (1513), Expect(4) = 0.0
Identities = 273/397 (68%), Positives = 334/397 (84%)
Frame = +3
Query: 885 RQQISGNSDLQKIIQGCAQNVDAEQHYSVKQNLLYWKDRLVIPEKNSLIQNILNEYHSSP 1064
R ++ + L+++++ Q DA HY+V++ LLYWKDR+VIP + ++ IL EYHSSP
Sbjct: 1024 RARLISDPHLKQLMETYKQGADAS-HYTVREGLLYWKDRVVIPAEEEIVNKILQEYHSSP 1082
Query: 1065 IGGHAGVARTIARITAQFYWPGLKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQV 1244
IGGHAG+ RT+AR+ AQFYWP ++ DV+ ++QKC++CQQAKS NT PAGLLQPLPIP QV
Sbjct: 1083 IGGHAGITRTLARLKAQFYWPKMQEDVKAYIQKCLICQQAKSNNTLPAGLLQPLPIPQQV 1142
Query: 1245 WEDMAMDFITGLPNSFGSTVIMVVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGI 1424
WED+AMDFITGLPNSFG +VIMVVIDRLTKYAHF+ ++ DY SK VAEAFM++IVKLHGI
Sbjct: 1143 WEDVAMDFITGLPNSFGLSVIMVVIDRLTKYAHFIPLKADYNSKVVAEAFMSHIVKLHGI 1202
Query: 1425 PKSIVSDRDKVFTSSFWQHLFKLQGTTLAMSTAYHPQSDGQSEALNKCLEMYLRCFTFDN 1604
P+SIVSDRD+VFTS+FWQHLFKLQGTTLAMS+AYHPQSDGQSE LNKCLEMYLRCFT+++
Sbjct: 1203 PRSIVSDRDRVFTSTFWQHLFKLQGTTLAMSSAYHPQSDGQSEVLNKCLEMYLRCFTYEH 1262
Query: 1605 PKGWFKILAWAEYWYNSAYHNSLGMTPFQALYGREPPGLVRKVLTVAENTEVTAQLADRE 1784
PKGW K L WAE+WYN+AYH SLGMTPF+ALYGREPP L R+ ++ + EV QL DR+
Sbjct: 1263 PKGWVKALPWAEFWYNTAYHMSLGMTPFRALYGREPPTLTRQACSIDDPAEVREQLTDRD 1322
Query: 1785 ILLQQLKGNLNKAQQRMKTQADKHRIELQFKVGDSVLVKLQPYRQHSVALRKNNKLSMRY 1964
LL +LK NL +AQQ MK QADK R+++ F++GD VLVKLQPYRQHS LRKN KLSMRY
Sbjct: 1323 ALLAKLKINLTRAQQVMKRQADKKRLDVSFQIGDEVLVKLQPYRQHSAVLRKNQKLSMRY 1382
Query: 1965 FGPFEILERIGSVAYKLKLPATAKIHPVFHISQLKLF 2075
FGPF++L +IG VAYKL+LP+ A+IHPVFH+SQLK F
Sbjct: 1383 FGPFKVLAKIGDVAYKLELPSAARIHPVFHVSQLKPF 1419
Score = 313 bits (801), Expect(4) = 0.0
Identities = 153/202 (75%), Positives = 173/202 (85%)
Frame = +2
Query: 89 FFDDILVYSSSWKAHLIHLELVLQTLKRHQLYARLS*CSFGLLEVDYLGHTVSGKGVAMD 268
FFDDIL+YS+SWK HL HLE VLQTLK+HQL+ARLS CSFG EVDYLGH VSG GV+M+
Sbjct: 749 FFDDILIYSASWKDHLKHLESVLQTLKQHQLFARLSKCSFGDTEVDYLGHKVSGLGVSME 808
Query: 269 KEKVKAVQEWPKPVNVKQVRGFLGLTGYYRRFIKAYANIAAPLTDLLKKEGFKWTGEAEN 448
KV+AV +WP P NVKQ+RGFLGLTGYYRRFIK+YANIA PLTDLL+K+ F W EAE
Sbjct: 809 NTKVQAVLDWPTPNNVKQLRGFLGLTGYYRRFIKSYANIAGPLTDLLQKDSFLWNNEAEA 868
Query: 449 ALVKLKEAVTEVSVLGLPNFDQPFTLETDASGIGVDAVLSQNGHPIAYFSKKMVPRMQKQ 628
A VKLK+A+TE VL LP+F QPF LETDASGIGV AVL QNGHPIAYFSKK+ PRMQKQ
Sbjct: 869 AFVKLKKAMTEAPVLSLPDFSQPFILETDASGIGVGAVLGQNGHPIAYFSKKLAPRMQKQ 928
Query: 629 SAYTRKLFAITEAIAKFRHYLV 694
SAYTR+L AITEA++KFRHYL+
Sbjct: 929 SAYTRELLAITEALSKFRHYLL 950
Score = 92.0 bits (227), Expect(4) = 0.0
Identities = 43/66 (65%), Positives = 48/66 (72%)
Frame = +1
Query: 685 LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADELSRMF 864
LLG+KF+I+T TPEQQAWLHKF+GYDFKIEYKP KDN AAD LSRMF
Sbjct: 949 LLGNKFIIRTDQRSLKSLMDQSLQTPEQQAWLHKFLGYDFKIEYKPGKDNQAADALSRMF 1008
Query: 865 FMAWSE 882
+AWSE
Sbjct: 1009 MLAWSE 1014
Score = 55.5 bits (132), Expect(4) = 0.0
Identities = 27/31 (87%), Positives = 27/31 (87%)
Frame = +1
Query: 1 MPFGLTNAPATFQSLMNHIFQKELRKFVLVF 93
MPFGLTNAPATFQ LMN IFQ LRKFVLVF
Sbjct: 719 MPFGLTNAPATFQCLMNKIFQFALRKFVLVF 749
>dbj|GAU11620.1| hypothetical protein TSUD_346120 [Trifolium subterraneum]
Length = 1479
Score = 579 bits (1493), Expect(4) = 0.0
Identities = 272/392 (69%), Positives = 329/392 (83%)
Frame = +3
Query: 903 NSDLQKIIQGCAQNVDAEQHYSVKQNLLYWKDRLVIPEKNSLIQNILNEYHSSPIGGHAG 1082
++ L +IIQ C Q HY+V+ LLYWK R+VIP ++L+Q +L E+HSSPIGGHAG
Sbjct: 1006 DTTLMEIIQQCEQG-QTNTHYTVRDGLLYWKHRIVIPVDDALLQQVLKEFHSSPIGGHAG 1064
Query: 1083 VARTIARITAQFYWPGLKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQVWEDMAM 1262
+ RT+ARI AQFYWP +K D+ +VQ C+VCQQ K+ NT PAGLLQPLPIPSQ+WED+AM
Sbjct: 1065 MTRTLARIQAQFYWPNMKQDIVQYVQNCLVCQQTKTTNTLPAGLLQPLPIPSQIWEDLAM 1124
Query: 1263 DFITGLPNSFGSTVIMVVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGIPKSIVS 1442
DFITGLP+S G TVI+VV+DRLTKYAHF+ M+TDY SKSVAE FM N+VKLHG+PKSIVS
Sbjct: 1125 DFITGLPSSHGYTVILVVVDRLTKYAHFIPMKTDYSSKSVAEVFMQNVVKLHGLPKSIVS 1184
Query: 1443 DRDKVFTSSFWQHLFKLQGTTLAMSTAYHPQSDGQSEALNKCLEMYLRCFTFDNPKGWFK 1622
DRDKVFTS+FWQ LFKLQGTTLAMS+AYHPQSDGQSE LNK LE+YLRCF+F+NPK W K
Sbjct: 1185 DRDKVFTSAFWQQLFKLQGTTLAMSSAYHPQSDGQSEVLNKTLELYLRCFSFNNPKAWSK 1244
Query: 1623 ILAWAEYWYNSAYHNSLGMTPFQALYGREPPGLVRKVLTVAENTEVTAQLADREILLQQL 1802
+L+W+E+WYN+A+ S+GMTPF+A+YGR+PP L R V ++ + A+L +R+ +LQQL
Sbjct: 1245 MLSWSEFWYNTAFQTSIGMTPFKAVYGRDPPYLNRYVAQDSDPPTLRAELMERDTILQQL 1304
Query: 1803 KGNLNKAQQRMKTQADKHRIELQFKVGDSVLVKLQPYRQHSVALRKNNKLSMRYFGPFEI 1982
K NL KAQQ MK QADKHRIELQF++GD VLVKLQPYRQHSVALRKN KL +RYFGPFEI
Sbjct: 1305 KNNLLKAQQYMKKQADKHRIELQFQIGDLVLVKLQPYRQHSVALRKNQKLGLRYFGPFEI 1364
Query: 1983 LERIGSVAYKLKLPATAKIHPVFHISQLKLFK 2078
+ ++G+VAYKLKLP AKIHPVFH+SQLK FK
Sbjct: 1365 IAKVGAVAYKLKLPDYAKIHPVFHVSQLKPFK 1396
Score = 286 bits (731), Expect(4) = 0.0
Identities = 138/202 (68%), Positives = 165/202 (81%)
Frame = +2
Query: 89 FFDDILVYSSSWKAHLIHLELVLQTLKRHQLYARLS*CSFGLLEVDYLGHTVSGKGVAMD 268
FFDDIL+YSSSW HL HL VL+ L+ + L+ +LS CSFG+ E+DYLGH V+G+GV M+
Sbjct: 725 FFDDILIYSSSWHDHLQHLNKVLEMLQANTLFVKLSKCSFGVNEIDYLGHIVTGQGVTME 784
Query: 269 KEKVKAVQEWPKPVNVKQVRGFLGLTGYYRRFIKAYANIAAPLTDLLKKEGFKWTGEAEN 448
K KV+AV +WP P N+KQ+RGFLGLTGYYRRFIK+YA IAAPLTDLLKKE +KW +AE
Sbjct: 785 KSKVQAVLDWPTPGNIKQLRGFLGLTGYYRRFIKSYAKIAAPLTDLLKKEAYKWNEQAEA 844
Query: 449 ALVKLKEAVTEVSVLGLPNFDQPFTLETDASGIGVDAVLSQNGHPIAYFSKKMVPRMQKQ 628
A +LK AVT VL LPNF++PF LETDASGIG+ AVL QN HPIAYFSKK+VPR QK+
Sbjct: 845 AFQQLKIAVTSAPVLALPNFNEPFILETDASGIGIGAVLHQNNHPIAYFSKKLVPRNQKK 904
Query: 629 SAYTRKLFAITEAIAKFRHYLV 694
SAY R++ AI EAIAKFRHYL+
Sbjct: 905 SAYFREMLAIAEAIAKFRHYLL 926
Score = 87.0 bits (214), Expect(4) = 0.0
Identities = 40/66 (60%), Positives = 45/66 (68%)
Frame = +1
Query: 685 LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADELSRMF 864
LLGHKF+I+T TP+QQ WLHKF+GYDF IEYKP KDN+AAD LSRM
Sbjct: 925 LLGHKFIIRTDQKSLRSLMEQSLQTPDQQEWLHKFLGYDFTIEYKPGKDNLAADALSRMM 984
Query: 865 FMAWSE 882
M WSE
Sbjct: 985 CMGWSE 990
Score = 61.2 bits (147), Expect(4) = 0.0
Identities = 28/31 (90%), Positives = 30/31 (96%)
Frame = +1
Query: 1 MPFGLTNAPATFQSLMNHIFQKELRKFVLVF 93
MPFGLTNAPATFQSLMNHIFQ+ LRK+VLVF
Sbjct: 695 MPFGLTNAPATFQSLMNHIFQQALRKYVLVF 725
>gb|PNX98514.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
Length = 1240
Score = 581 bits (1497), Expect(4) = 0.0
Identities = 274/398 (68%), Positives = 334/398 (83%)
Frame = +3
Query: 885 RQQISGNSDLQKIIQGCAQNVDAEQHYSVKQNLLYWKDRLVIPEKNSLIQNILNEYHSSP 1064
++ I + +L +IIQ C Q + A +Y+V++ +LYWK R+VIP K +LIQ IL E+H+SP
Sbjct: 729 KEAIQQDDNLLEIIQKCLQGL-APTNYTVREGILYWKHRMVIPPKAALIQQILEEFHTSP 787
Query: 1065 IGGHAGVARTIARITAQFYWPGLKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQV 1244
IGGHAG+ RT+ARI +QFYW +K D+ D+VQ C+VCQQAK+ NT PAGLLQPLPIPSQV
Sbjct: 788 IGGHAGMTRTLARIKSQFYWSAMKKDIFDYVQNCLVCQQAKTTNTLPAGLLQPLPIPSQV 847
Query: 1245 WEDMAMDFITGLPNSFGSTVIMVVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGI 1424
WED+AMDFITGLP SFG T IMVV+DRLTKYAHF+AM+TDY SKSVAEAFM N+VKLHG+
Sbjct: 848 WEDIAMDFITGLPLSFGYTTIMVVVDRLTKYAHFIAMKTDYTSKSVAEAFMHNVVKLHGM 907
Query: 1425 PKSIVSDRDKVFTSSFWQHLFKLQGTTLAMSTAYHPQSDGQSEALNKCLEMYLRCFTFDN 1604
PKSIVSDRDKVFTS+FWQHLFKLQGTTLAM++AYHPQSDGQ+E LNK LE+YLRCF+F+N
Sbjct: 908 PKSIVSDRDKVFTSTFWQHLFKLQGTTLAMTSAYHPQSDGQTEVLNKGLELYLRCFSFNN 967
Query: 1605 PKGWFKILAWAEYWYNSAYHNSLGMTPFQALYGREPPGLVRKVLTVAENTEVTAQLADRE 1784
PK WFK+L+W+E+WYN+A+ S+GMTPF+ALYGR+PP L R V ++ + +L +R+
Sbjct: 968 PKSWFKMLSWSEFWYNTAFQTSIGMTPFKALYGRDPPYLTRYVAQASDPPTLQEELMERD 1027
Query: 1785 ILLQQLKGNLNKAQQRMKTQADKHRIELQFKVGDSVLVKLQPYRQHSVALRKNNKLSMRY 1964
+LQQLK NL +AQQ MK QADKHR ++ K+GD VLVKLQPYRQHSVALRKN KL +RY
Sbjct: 1028 KILQQLKDNLIRAQQYMKKQADKHRSDISLKIGDLVLVKLQPYRQHSVALRKNQKLGLRY 1087
Query: 1965 FGPFEILERIGSVAYKLKLPATAKIHPVFHISQLKLFK 2078
FGPFEI+ R+G VAYKLKLP AKIHPVFH+SQLK FK
Sbjct: 1088 FGPFEIIARVGEVAYKLKLPDDAKIHPVFHVSQLKPFK 1125
Score = 284 bits (726), Expect(4) = 0.0
Identities = 134/202 (66%), Positives = 167/202 (82%)
Frame = +2
Query: 89 FFDDILVYSSSWKAHLIHLELVLQTLKRHQLYARLS*CSFGLLEVDYLGHTVSGKGVAMD 268
FFDDIL+YSSSW+ HL HL+ VL+ L+ + L+ +LS CSFG+ E++YLGH V+G+GV+MD
Sbjct: 454 FFDDILIYSSSWQDHLTHLDAVLKVLQDNSLFVKLSKCSFGVSEIEYLGHMVTGQGVSMD 513
Query: 269 KEKVKAVQEWPKPVNVKQVRGFLGLTGYYRRFIKAYANIAAPLTDLLKKEGFKWTGEAEN 448
++KV+AV W P NVKQ+RGFLGLTGYYRRFIK+YA IAAPLTDLLKKE ++W +A+
Sbjct: 514 RDKVQAVLNWSTPTNVKQLRGFLGLTGYYRRFIKSYAKIAAPLTDLLKKESYRWNDQADI 573
Query: 449 ALVKLKEAVTEVSVLGLPNFDQPFTLETDASGIGVDAVLSQNGHPIAYFSKKMVPRMQKQ 628
A +LKEAVT VL LPNF +PF LETDASG+G+ AVL Q+ HPIAYFSKK+VPR QK+
Sbjct: 574 AFQQLKEAVTSAPVLALPNFHKPFILETDASGVGIGAVLHQDNHPIAYFSKKLVPRNQKK 633
Query: 629 SAYTRKLFAITEAIAKFRHYLV 694
SAY R++ AI EAIAKFRHYL+
Sbjct: 634 SAYFREMLAIAEAIAKFRHYLL 655
Score = 84.3 bits (207), Expect(4) = 0.0
Identities = 38/66 (57%), Positives = 46/66 (69%)
Frame = +1
Query: 685 LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADELSRMF 864
LLGH+F+I+T TPEQQ WLHKF+GYDF IEYKP K+N+AAD LSR+
Sbjct: 654 LLGHRFIIRTDQKSLRSLMDQSLQTPEQQEWLHKFLGYDFVIEYKPGKENLAADALSRLM 713
Query: 865 FMAWSE 882
+AWSE
Sbjct: 714 TLAWSE 719
Score = 60.1 bits (144), Expect(4) = 0.0
Identities = 28/31 (90%), Positives = 29/31 (93%)
Frame = +1
Query: 1 MPFGLTNAPATFQSLMNHIFQKELRKFVLVF 93
MPFGLTNAPATFQSLMNHIFQ LRK+VLVF
Sbjct: 424 MPFGLTNAPATFQSLMNHIFQHVLRKYVLVF 454
>gb|PNX92431.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
Length = 1502
Score = 566 bits (1458), Expect(4) = 0.0
Identities = 266/397 (67%), Positives = 329/397 (82%)
Frame = +3
Query: 885 RQQISGNSDLQKIIQGCAQNVDAEQHYSVKQNLLYWKDRLVIPEKNSLIQNILNEYHSSP 1064
R+ + ++ L++++Q A A YS+++ LLYWK RLVIP+ + L+Q +L E+H+SP
Sbjct: 1004 RRALENDNQLREVMQNYAIG-KAPVQYSMREGLLYWKQRLVIPKNDDLLQKLLFEFHTSP 1062
Query: 1065 IGGHAGVARTIARITAQFYWPGLKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQV 1244
IGGHAG+ RTIARI AQFYWP +K D+ ++V KCVVCQQAK+ NT+PAGLLQPLPIPSQV
Sbjct: 1063 IGGHAGITRTIARIKAQFYWPDMKKDIAEYVHKCVVCQQAKTTNTSPAGLLQPLPIPSQV 1122
Query: 1245 WEDMAMDFITGLPNSFGSTVIMVVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGI 1424
WED+AMDFITGLP S+G T IMVV+DRLTK AHF+ M+TDY SK+VAEAFM NIVKLHG+
Sbjct: 1123 WEDIAMDFITGLPLSYGYTTIMVVVDRLTKSAHFIPMKTDYTSKTVAEAFMHNIVKLHGM 1182
Query: 1425 PKSIVSDRDKVFTSSFWQHLFKLQGTTLAMSTAYHPQSDGQSEALNKCLEMYLRCFTFDN 1604
PKSIVSDRDKVFTS+FWQHLFK+QGT+LAMS+AYHPQ+DGQ+E LNK LE++LRCFTF N
Sbjct: 1183 PKSIVSDRDKVFTSAFWQHLFKMQGTSLAMSSAYHPQTDGQTEVLNKTLELFLRCFTFHN 1242
Query: 1605 PKGWFKILAWAEYWYNSAYHNSLGMTPFQALYGREPPGLVRKVLTVAENTEVTAQLADRE 1784
PK WFK+++WAEYWYN+A+ S+GMTPF+ALYGR+PP L + + V + + +L +R+
Sbjct: 1243 PKSWFKVMSWAEYWYNTAFQTSIGMTPFKALYGRDPPYLTKYEVQVDDPPALREELMERD 1302
Query: 1785 ILLQQLKGNLNKAQQRMKTQADKHRIELQFKVGDSVLVKLQPYRQHSVALRKNNKLSMRY 1964
+LQQLK NL +AQQ MK QADKHR E+ FKVGD VLVKLQPY+Q SVALRKN KL MRY
Sbjct: 1303 QILQQLKTNLERAQQYMKQQADKHRREVSFKVGDLVLVKLQPYKQQSVALRKNQKLGMRY 1362
Query: 1965 FGPFEILERIGSVAYKLKLPATAKIHPVFHISQLKLF 2075
FGPFE++ +G VAYKL+LP AKIHPVFH+SQLK F
Sbjct: 1363 FGPFEVIACVGKVAYKLQLPENAKIHPVFHVSQLKPF 1399
Score = 288 bits (737), Expect(4) = 0.0
Identities = 138/202 (68%), Positives = 168/202 (83%)
Frame = +2
Query: 89 FFDDILVYSSSWKAHLIHLELVLQTLKRHQLYARLS*CSFGLLEVDYLGHTVSGKGVAMD 268
FFDDIL+YSS+W+ HL HL+ VL L+ + LY +LS CSFG+LE++YLGH V+G+GV+MD
Sbjct: 729 FFDDILIYSSNWQEHLHHLDTVLTVLQDNTLYVKLSKCSFGVLEIEYLGHVVTGQGVSMD 788
Query: 269 KEKVKAVQEWPKPVNVKQVRGFLGLTGYYRRFIKAYANIAAPLTDLLKKEGFKWTGEAEN 448
K+KV+AV WP P NVKQ+RGFLGLTGYYRRFIK+YA IA+PLTDLLKKE ++WT +AE
Sbjct: 789 KDKVQAVVNWPTPSNVKQLRGFLGLTGYYRRFIKSYAKIASPLTDLLKKEAYQWTEQAEV 848
Query: 449 ALVKLKEAVTEVSVLGLPNFDQPFTLETDASGIGVDAVLSQNGHPIAYFSKKMVPRMQKQ 628
A +LK A+T VL LPNF +PF LETDASGIG+ AVL Q GHPIAYFSKK+VPR QK+
Sbjct: 849 AFHQLKNAITTAPVLILPNFKEPFILETDASGIGIGAVLHQQGHPIAYFSKKLVPRNQKK 908
Query: 629 SAYTRKLFAITEAIAKFRHYLV 694
SAY R++ AI EAIAKFRHYL+
Sbjct: 909 SAYFREMLAIAEAIAKFRHYLL 930
Score = 87.0 bits (214), Expect(4) = 0.0
Identities = 40/66 (60%), Positives = 46/66 (69%)
Frame = +1
Query: 685 LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADELSRMF 864
LLGHKF+I+T TPEQQ WLHKF+GYDF IEYKP K+N+AAD LSR+
Sbjct: 929 LLGHKFIIRTDQKSLRNLMEQSLQTPEQQEWLHKFLGYDFTIEYKPGKENMAADALSRVM 988
Query: 865 FMAWSE 882
MAWSE
Sbjct: 989 VMAWSE 994
Score = 60.5 bits (145), Expect(4) = 0.0
Identities = 28/31 (90%), Positives = 29/31 (93%)
Frame = +1
Query: 1 MPFGLTNAPATFQSLMNHIFQKELRKFVLVF 93
MPFGLTNAPATFQSLMNHIFQ LRK+VLVF
Sbjct: 699 MPFGLTNAPATFQSLMNHIFQHALRKYVLVF 729
>gb|PNX96484.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
Length = 1258
Score = 568 bits (1464), Expect(4) = 0.0
Identities = 267/398 (67%), Positives = 324/398 (81%)
Frame = +3
Query: 885 RQQISGNSDLQKIIQGCAQNVDAEQHYSVKQNLLYWKDRLVIPEKNSLIQNILNEYHSSP 1064
R + +S L I+Q C QN HY+VK LL+WK R+VIP+ + LI+ +L E H+SP
Sbjct: 728 RAALKQDSTLLGIMQKCVQNNATNSHYTVKDELLFWKHRIVIPKNSELIKQVLYELHTSP 787
Query: 1065 IGGHAGVARTIARITAQFYWPGLKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQV 1244
IGGHAG+ART+AR+ +QFYWP +K D+ D+VQ C +CQ+AK+ NT PAGLLQPLPIPSQV
Sbjct: 788 IGGHAGMARTLARVKSQFYWPDMKTDIADYVQNCAICQKAKTTNTLPAGLLQPLPIPSQV 847
Query: 1245 WEDMAMDFITGLPNSFGSTVIMVVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGI 1424
WED+AMDFITGLP+S G T I+VVIDRLTKYAHF+ ++TDY SK VAEA M NIVKLHG+
Sbjct: 848 WEDVAMDFITGLPSSQGYTTILVVIDRLTKYAHFIPLKTDYSSKIVAEAVMDNIVKLHGM 907
Query: 1425 PKSIVSDRDKVFTSSFWQHLFKLQGTTLAMSTAYHPQSDGQSEALNKCLEMYLRCFTFDN 1604
PKSIVSDRDKVFTSSFWQ LFKLQGTTLAMS+AYHPQSDGQSE LNK LE++LRCFTFDN
Sbjct: 908 PKSIVSDRDKVFTSSFWQQLFKLQGTTLAMSSAYHPQSDGQSEVLNKTLELFLRCFTFDN 967
Query: 1605 PKGWFKILAWAEYWYNSAYHNSLGMTPFQALYGREPPGLVRKVLTVAENTEVTAQLADRE 1784
PK W K L+W+E+WYN+A+ S+GMTPF+ALYGR+PP L+R + + +L +R+
Sbjct: 968 PKSWCKALSWSEFWYNTAFQTSIGMTPFKALYGRDPPALIRYETQANDPPTLQEKLMERD 1027
Query: 1785 ILLQQLKGNLNKAQQRMKTQADKHRIELQFKVGDSVLVKLQPYRQHSVALRKNNKLSMRY 1964
++QQLK NL KAQQ MK QADKHR++++ +VGD VLVKLQPYRQ SVALRKN KL MRY
Sbjct: 1028 RIIQQLKLNLEKAQQYMKKQADKHRVDVKLQVGDLVLVKLQPYRQQSVALRKNQKLGMRY 1087
Query: 1965 FGPFEILERIGSVAYKLKLPATAKIHPVFHISQLKLFK 2078
FGPFE++ ++G VAYKLKLP AKIHPVFH+SQLK FK
Sbjct: 1088 FGPFEVIAKVGEVAYKLKLPEHAKIHPVFHVSQLKPFK 1125
Score = 288 bits (737), Expect(4) = 0.0
Identities = 136/202 (67%), Positives = 166/202 (82%)
Frame = +2
Query: 89 FFDDILVYSSSWKAHLIHLELVLQTLKRHQLYARLS*CSFGLLEVDYLGHTVSGKGVAMD 268
FFDDILVYS +W HL HL VLQ L+ +QLY +LS CSFG+LE++YLGH VSG+GV+MD
Sbjct: 453 FFDDILVYSKTWHEHLKHLAAVLQVLQDNQLYVKLSKCSFGVLEIEYLGHVVSGEGVSMD 512
Query: 269 KEKVKAVQEWPKPVNVKQVRGFLGLTGYYRRFIKAYANIAAPLTDLLKKEGFKWTGEAEN 448
K K++AV +WP P N+KQ+RGFLGLTGYYRRFI++YA IA+PLTDLLKKE + WT + E+
Sbjct: 513 KTKIQAVVDWPPPKNIKQLRGFLGLTGYYRRFIQSYAKIASPLTDLLKKEAYTWTSQEES 572
Query: 449 ALVKLKEAVTEVSVLGLPNFDQPFTLETDASGIGVDAVLSQNGHPIAYFSKKMVPRMQKQ 628
A KLK A+T VL LP+F +PF LETDASGIG+ AVL Q GHPIAYFSKK+VPR Q++
Sbjct: 573 AFQKLKHAITTAPVLALPDFTKPFVLETDASGIGIGAVLHQEGHPIAYFSKKLVPRNQRK 632
Query: 629 SAYTRKLFAITEAIAKFRHYLV 694
SAY R++ AI EAIAKFRHYL+
Sbjct: 633 SAYFREMLAIAEAIAKFRHYLL 654
Score = 85.9 bits (211), Expect(4) = 0.0
Identities = 39/66 (59%), Positives = 46/66 (69%)
Frame = +1
Query: 685 LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADELSRMF 864
LLGHKF+I+T TP+QQ WLH+F+GYDF IEYKP K+NVAAD LSR+
Sbjct: 653 LLGHKFIIRTDQKSLRNLMEQALQTPDQQEWLHRFLGYDFSIEYKPGKENVAADALSRVM 712
Query: 865 FMAWSE 882
MAWSE
Sbjct: 713 TMAWSE 718
Score = 56.2 bits (134), Expect(4) = 0.0
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +1
Query: 1 MPFGLTNAPATFQSLMNHIFQKELRKFVLVF 93
MPFGLTNAPATFQSLMN IFQ LRK+VLVF
Sbjct: 423 MPFGLTNAPATFQSLMNTIFQTVLRKYVLVF 453
>gb|PNX73110.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
Length = 937
Score = 567 bits (1460), Expect(4) = 0.0
Identities = 266/395 (67%), Positives = 328/395 (83%)
Frame = +3
Query: 894 ISGNSDLQKIIQGCAQNVDAEQHYSVKQNLLYWKDRLVIPEKNSLIQNILNEYHSSPIGG 1073
+ ++ + +I+ CA A Y++++ LLYWK RLVIP++N L+ +L E+H+SPIGG
Sbjct: 464 LQNDNQMMEIMLKCASG-KAPIQYTMREGLLYWKQRLVIPKQNELLHKVLYEFHTSPIGG 522
Query: 1074 HAGVARTIARITAQFYWPGLKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQVWED 1253
HAG+ RT+ARI +QFYWP +K D+ ++VQ CVVCQQAK+ NT+PAGLLQPLPIPSQVWED
Sbjct: 523 HAGITRTMARIKSQFYWPDMKKDILEYVQNCVVCQQAKTTNTSPAGLLQPLPIPSQVWED 582
Query: 1254 MAMDFITGLPNSFGSTVIMVVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGIPKS 1433
+AMDFITGLP S+G T IMVV+DRLTKYAHF+ MRTDY S+SVAEAFM NIVKLHG+PKS
Sbjct: 583 IAMDFITGLPLSYGYTTIMVVVDRLTKYAHFIPMRTDYTSRSVAEAFMHNIVKLHGMPKS 642
Query: 1434 IVSDRDKVFTSSFWQHLFKLQGTTLAMSTAYHPQSDGQSEALNKCLEMYLRCFTFDNPKG 1613
IVSDRDKVFTS+FWQ LFKLQGT+LAMS+AYHPQSDGQ+E LNK LE++LRCF+F NPK
Sbjct: 643 IVSDRDKVFTSAFWQQLFKLQGTSLAMSSAYHPQSDGQTEVLNKGLELFLRCFSFHNPKS 702
Query: 1614 WFKILAWAEYWYNSAYHNSLGMTPFQALYGREPPGLVRKVLTVAENTEVTAQLADREILL 1793
W+K+L+WAEYWYN+A+ S+GMTPF+ALYGR+PP L + V ++ + +L +R+ +L
Sbjct: 703 WYKVLSWAEYWYNTAFQTSIGMTPFKALYGRDPPYLTKYEAQVTDSPALQEELMERDKIL 762
Query: 1794 QQLKGNLNKAQQRMKTQADKHRIELQFKVGDSVLVKLQPYRQHSVALRKNNKLSMRYFGP 1973
QQLK NL +AQQ MK QADKHR E+ +VGD VLVKLQPYRQ SV+LRKN KL MRYFGP
Sbjct: 763 QQLKINLERAQQYMKKQADKHRSEVNLQVGDLVLVKLQPYRQQSVSLRKNQKLGMRYFGP 822
Query: 1974 FEILERIGSVAYKLKLPATAKIHPVFHISQLKLFK 2078
FEI+ R+G+VAYKLKLP AKIHPVFH+SQLK FK
Sbjct: 823 FEIIARVGNVAYKLKLPDNAKIHPVFHVSQLKPFK 857
Score = 284 bits (726), Expect(4) = 0.0
Identities = 136/202 (67%), Positives = 165/202 (81%)
Frame = +2
Query: 89 FFDDILVYSSSWKAHLIHLELVLQTLKRHQLYARLS*CSFGLLEVDYLGHTVSGKGVAMD 268
FFDDIL+YS +W+ HL HL+ VL+ L+ + L+ +LS CSFG+LE++YLGH V+G+GV+MD
Sbjct: 186 FFDDILIYSRTWQDHLKHLDAVLKILQENTLFVKLSKCSFGVLEIEYLGHMVTGQGVSMD 245
Query: 269 KEKVKAVQEWPKPVNVKQVRGFLGLTGYYRRFIKAYANIAAPLTDLLKKEGFKWTGEAEN 448
K+KV+AV WP P NVKQ+RGFLGLTGYYRRFIK+YA IA+PLTDLLKKE + W AE
Sbjct: 246 KDKVQAVLNWPTPKNVKQLRGFLGLTGYYRRFIKSYAKIASPLTDLLKKEAYAWNDLAEL 305
Query: 449 ALVKLKEAVTEVSVLGLPNFDQPFTLETDASGIGVDAVLSQNGHPIAYFSKKMVPRMQKQ 628
A +LK AVT VL LPNF QPF LETDASG+G+ AVL Q GHPIAYFSKK+VPR QK+
Sbjct: 306 AFQQLKSAVTTAPVLALPNFHQPFILETDASGVGIGAVLHQEGHPIAYFSKKLVPRNQKK 365
Query: 629 SAYTRKLFAITEAIAKFRHYLV 694
SAY R++ AI EAIAKFRHYL+
Sbjct: 366 SAYFREMLAIAEAIAKFRHYLL 387
Score = 85.9 bits (211), Expect(4) = 0.0
Identities = 39/66 (59%), Positives = 46/66 (69%)
Frame = +1
Query: 685 LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADELSRMF 864
LLGHKF+I+T TPEQQ WLHKF+GYDF IEYKP K+N+AAD LSR+
Sbjct: 386 LLGHKFIIRTDQKSLRSLMEQSLQTPEQQEWLHKFLGYDFTIEYKPGKENMAADALSRLM 445
Query: 865 FMAWSE 882
+AWSE
Sbjct: 446 TLAWSE 451
Score = 60.5 bits (145), Expect(4) = 0.0
Identities = 28/31 (90%), Positives = 29/31 (93%)
Frame = +1
Query: 1 MPFGLTNAPATFQSLMNHIFQKELRKFVLVF 93
MPFGLTNAPATFQSLMNHIFQ LRK+VLVF
Sbjct: 156 MPFGLTNAPATFQSLMNHIFQHALRKYVLVF 186
>gb|PNY17453.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
Length = 1535
Score = 563 bits (1451), Expect(4) = 0.0
Identities = 268/398 (67%), Positives = 326/398 (81%)
Frame = +3
Query: 885 RQQISGNSDLQKIIQGCAQNVDAEQHYSVKQNLLYWKDRLVIPEKNSLIQNILNEYHSSP 1064
R + ++ +++I+ C A YS++ LLYWK RLVIP+ N L+ +L E+H+SP
Sbjct: 1001 RVALQNDNQMREILMKCNAG-KAPVQYSMRDGLLYWKQRLVIPKDNDLLYKVLFEFHTSP 1059
Query: 1065 IGGHAGVARTIARITAQFYWPGLKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQV 1244
IGGHAG+ RT+ARI +QFYWP +K D+ D+VQKC+VCQQAK+ NT+PAGLLQPLPIPSQV
Sbjct: 1060 IGGHAGITRTMARIKSQFYWPDMKQDIIDYVQKCMVCQQAKTTNTSPAGLLQPLPIPSQV 1119
Query: 1245 WEDMAMDFITGLPNSFGSTVIMVVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGI 1424
WED+AMDFITGLP S G T IMVV+DRLTKYAHF+ M++DY SKSVAE+FM NIVKLHG+
Sbjct: 1120 WEDIAMDFITGLPLSSGYTTIMVVVDRLTKYAHFIPMKSDYTSKSVAESFMHNIVKLHGM 1179
Query: 1425 PKSIVSDRDKVFTSSFWQHLFKLQGTTLAMSTAYHPQSDGQSEALNKCLEMYLRCFTFDN 1604
PKSIVSDRDKVFTS+FWQ LFKLQGT+LAMS+AYHPQSDGQ+E LNK LE++LRCFTF N
Sbjct: 1180 PKSIVSDRDKVFTSAFWQQLFKLQGTSLAMSSAYHPQSDGQTEVLNKALELFLRCFTFHN 1239
Query: 1605 PKGWFKILAWAEYWYNSAYHNSLGMTPFQALYGREPPGLVRKVLTVAENTEVTAQLADRE 1784
PK W K+L+WAEYWYN+A+ S+GMTPF+ALYGR+PP L + V + + +L +R+
Sbjct: 1240 PKSWSKVLSWAEYWYNTAFQTSIGMTPFKALYGRDPPYLTKYEAQVTDPPALQEELMERD 1299
Query: 1785 ILLQQLKGNLNKAQQRMKTQADKHRIELQFKVGDSVLVKLQPYRQHSVALRKNNKLSMRY 1964
+LQQLK NL++AQQ MK QADKHR ++ F+VGD VLVKLQPYRQ SVALRKN KL MRY
Sbjct: 1300 KILQQLKSNLDRAQQYMKKQADKHRKDVTFQVGDLVLVKLQPYRQQSVALRKNQKLGMRY 1359
Query: 1965 FGPFEILERIGSVAYKLKLPATAKIHPVFHISQLKLFK 2078
FGPFEI+ IG+VAYKLKLP AKIHPVFH+SQLK FK
Sbjct: 1360 FGPFEIIACIGAVAYKLKLPDNAKIHPVFHVSQLKPFK 1397
Score = 288 bits (737), Expect(4) = 0.0
Identities = 134/202 (66%), Positives = 169/202 (83%)
Frame = +2
Query: 89 FFDDILVYSSSWKAHLIHLELVLQTLKRHQLYARLS*CSFGLLEVDYLGHTVSGKGVAMD 268
FFDDIL+YS++W+ HL HL++VL+ L+ + LY +LS C+FG+LE++YLGH V+G+GV+MD
Sbjct: 726 FFDDILIYSNTWQDHLQHLDVVLRVLQENILYVKLSKCNFGVLEIEYLGHVVTGQGVSMD 785
Query: 269 KEKVKAVQEWPKPVNVKQVRGFLGLTGYYRRFIKAYANIAAPLTDLLKKEGFKWTGEAEN 448
K+KV+AV WP P+NVKQ+RGFLGLTGYYRRFIK+YA IA+PLTDLLKKE ++W +AE
Sbjct: 786 KDKVQAVLNWPTPMNVKQLRGFLGLTGYYRRFIKSYAKIASPLTDLLKKEAYQWNAQAEE 845
Query: 449 ALVKLKEAVTEVSVLGLPNFDQPFTLETDASGIGVDAVLSQNGHPIAYFSKKMVPRMQKQ 628
A +LK A+T VL LPNF PF LETDASG+G+ AVL Q GHPIAYFSKK+VPR QK+
Sbjct: 846 AFKQLKNAITTAPVLALPNFKLPFILETDASGVGIGAVLHQQGHPIAYFSKKLVPRNQKK 905
Query: 629 SAYTRKLFAITEAIAKFRHYLV 694
SAY R++ AI EAIAKFRHYL+
Sbjct: 906 SAYFREMLAIAEAIAKFRHYLL 927
Score = 83.2 bits (204), Expect(4) = 0.0
Identities = 37/66 (56%), Positives = 46/66 (69%)
Frame = +1
Query: 685 LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADELSRMF 864
LLGHKF+I+T TP+QQ WLHKF+GYDF IEYKP K+N+AAD LSR+
Sbjct: 926 LLGHKFIIRTDQKSLRSLMEQSLQTPDQQEWLHKFLGYDFTIEYKPGKENMAADALSRIM 985
Query: 865 FMAWSE 882
++WSE
Sbjct: 986 TLSWSE 991
Score = 60.5 bits (145), Expect(4) = 0.0
Identities = 28/31 (90%), Positives = 29/31 (93%)
Frame = +1
Query: 1 MPFGLTNAPATFQSLMNHIFQKELRKFVLVF 93
MPFGLTNAPATFQSLMNHIFQ LRK+VLVF
Sbjct: 696 MPFGLTNAPATFQSLMNHIFQHALRKYVLVF 726
>dbj|GAU27453.1| hypothetical protein TSUD_161390 [Trifolium subterraneum]
Length = 1531
Score = 568 bits (1464), Expect(4) = 0.0
Identities = 264/398 (66%), Positives = 331/398 (83%)
Frame = +3
Query: 885 RQQISGNSDLQKIIQGCAQNVDAEQHYSVKQNLLYWKDRLVIPEKNSLIQNILNEYHSSP 1064
R + +S L +I++ CAQN D+ +Y++K +LL+WK R+VIP+ + L Q +L E H+SP
Sbjct: 1001 RVALKQDSTLLEIMEKCAQNSDSNSNYTIKDDLLFWKHRIVIPKHSELRQQVLYELHTSP 1060
Query: 1065 IGGHAGVARTIARITAQFYWPGLKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQV 1244
IGGHAG+ART+AR+ AQFYW +K D+ +VQ CV+CQ+AK+ NT PAGLLQPLPIPSQV
Sbjct: 1061 IGGHAGIARTLARVKAQFYWLDMKTDIAKYVQNCVICQKAKTTNTPPAGLLQPLPIPSQV 1120
Query: 1245 WEDMAMDFITGLPNSFGSTVIMVVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGI 1424
WED+AMDFITGLP+S G T I+VVIDRLTKYAHF+ ++TDY SK VAEAFM NIVKLHG+
Sbjct: 1121 WEDVAMDFITGLPSSHGYTTILVVIDRLTKYAHFIPLKTDYSSKIVAEAFMDNIVKLHGM 1180
Query: 1425 PKSIVSDRDKVFTSSFWQHLFKLQGTTLAMSTAYHPQSDGQSEALNKCLEMYLRCFTFDN 1604
PKSIVSDRDKVFTSSFWQ LFKLQGT+LAMS+AYHPQSDGQSE LNK LE++LRCFTF+N
Sbjct: 1181 PKSIVSDRDKVFTSSFWQQLFKLQGTSLAMSSAYHPQSDGQSEVLNKTLELFLRCFTFEN 1240
Query: 1605 PKGWFKILAWAEYWYNSAYHNSLGMTPFQALYGREPPGLVRKVLTVAENTEVTAQLADRE 1784
PK W K LAW+E+WYN+A+ S+GMTPF+ALYGR+PP ++R + +++ + +L +R+
Sbjct: 1241 PKSWCKALAWSEFWYNTAFQTSIGMTPFKALYGRDPPAIIRYEIQASDSPTLQEKLMERD 1300
Query: 1785 ILLQQLKGNLNKAQQRMKTQADKHRIELQFKVGDSVLVKLQPYRQHSVALRKNNKLSMRY 1964
++QQLK NL KAQQ MK QADKHR++++ +VGD VLVKLQPYRQ SVALRKN KL M+Y
Sbjct: 1301 RIIQQLKLNLEKAQQYMKKQADKHRVDVKLQVGDWVLVKLQPYRQQSVALRKNQKLGMKY 1360
Query: 1965 FGPFEILERIGSVAYKLKLPATAKIHPVFHISQLKLFK 2078
FGPFE++ ++G VAYKLKLP AKIHPVFH+SQLK FK
Sbjct: 1361 FGPFEVIAKVGEVAYKLKLPDHAKIHPVFHVSQLKPFK 1398
Score = 283 bits (724), Expect(4) = 0.0
Identities = 134/202 (66%), Positives = 162/202 (80%)
Frame = +2
Query: 89 FFDDILVYSSSWKAHLIHLELVLQTLKRHQLYARLS*CSFGLLEVDYLGHTVSGKGVAMD 268
FFDDILVYS +W HL HL VLQ LK ++LY +LS CSFG+LE++YLGH VSG+GV MD
Sbjct: 726 FFDDILVYSKTWHEHLKHLAAVLQVLKDNELYVKLSKCSFGVLEIEYLGHVVSGEGVYMD 785
Query: 269 KEKVKAVQEWPKPVNVKQVRGFLGLTGYYRRFIKAYANIAAPLTDLLKKEGFKWTGEAEN 448
K K++ V +WP P N+KQ+RGFLGLTGYYRRFI++YA IA+PLTDLLKK+ + W E E
Sbjct: 786 KSKIQVVVDWPSPKNIKQLRGFLGLTGYYRRFIQSYAKIASPLTDLLKKDAYTWNSEMEA 845
Query: 449 ALVKLKEAVTEVSVLGLPNFDQPFTLETDASGIGVDAVLSQNGHPIAYFSKKMVPRMQKQ 628
A KLK A+T VL LP+F +PF LETDASGIG+ AVL Q GHPIAYFSKK+VPR Q++
Sbjct: 846 AFQKLKHAITTAPVLALPDFTKPFILETDASGIGIGAVLHQEGHPIAYFSKKLVPRNQRK 905
Query: 629 SAYTRKLFAITEAIAKFRHYLV 694
SAY R++ AI EAIAKFRHYL+
Sbjct: 906 SAYFREMLAIAEAIAKFRHYLL 927
Score = 84.3 bits (207), Expect(4) = 0.0
Identities = 38/66 (57%), Positives = 46/66 (69%)
Frame = +1
Query: 685 LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADELSRMF 864
LLGHKF+I+T TP+QQ WLH+F+GYDF IEYKP K+NVAAD LSR+
Sbjct: 926 LLGHKFIIRTDQKSLRNLMEQALQTPDQQEWLHRFLGYDFTIEYKPGKENVAADALSRVM 985
Query: 865 FMAWSE 882
+AWSE
Sbjct: 986 TLAWSE 991
Score = 55.5 bits (132), Expect(4) = 0.0
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +1
Query: 1 MPFGLTNAPATFQSLMNHIFQKELRKFVLVF 93
MPFGLTNAPATFQSLMN IFQ LRK+VLVF
Sbjct: 696 MPFGLTNAPATFQSLMNTIFQIVLRKYVLVF 726
>dbj|GAU23504.1| hypothetical protein TSUD_39830 [Trifolium subterraneum]
Length = 1160
Score = 532 bits (1370), Expect(4) = 0.0
Identities = 256/375 (68%), Positives = 303/375 (80%)
Frame = +3
Query: 954 EQHYSVKQNLLYWKDRLVIPEKNSLIQNILNEYHSSPIGGHAGVARTIARITAQFYWPGL 1133
+ Y L+++ +R+++P L + IL E+HSSPIGGHAG+ RT+ARI+AQFYW +
Sbjct: 731 DPRYVHHDGLIFFNNRIMVPTHQELKEKILFEFHSSPIGGHAGITRTLARISAQFYWVNM 790
Query: 1134 KNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQVWEDMAMDFITGLPNSFGSTVIMV 1313
K D++ FVQ CV+CQQAK APAGLLQPLPIP QVWED+AMDFITGLP+S G TVIMV
Sbjct: 791 KQDIQQFVQNCVICQQAKHETRAPAGLLQPLPIPEQVWEDVAMDFITGLPSSHGYTVIMV 850
Query: 1314 VIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGIPKSIVSDRDKVFTSSFWQHLFKL 1493
VIDRLTKY+HF+ ++ DY SKSVAEAFM IVKLHG+PKSIVSDRDKVF S FW+ LFKL
Sbjct: 851 VIDRLTKYSHFIPLKMDYNSKSVAEAFMKYIVKLHGLPKSIVSDRDKVFVSQFWKDLFKL 910
Query: 1494 QGTTLAMSTAYHPQSDGQSEALNKCLEMYLRCFTFDNPKGWFKILAWAEYWYNSAYHNSL 1673
QGTTLAMS+AYHPQ+DGQSEALNKCLEMYLRC TF PK W K L WAEYWYN+A+H SL
Sbjct: 911 QGTTLAMSSAYHPQTDGQSEALNKCLEMYLRCLTFQQPKTWSKALDWAEYWYNTAHHTSL 970
Query: 1674 GMTPFQALYGREPPGLVRKVLTVAENTEVTAQLADREILLQQLKGNLNKAQQRMKTQADK 1853
GMTPF+ALYGR PP LVR + + V QL+DR+ LL Q+K NL +AQQ MK QADK
Sbjct: 971 GMTPFRALYGRHPPSLVRYHPSPHDAATVQQQLSDRDNLLAQIKVNLCRAQQVMKDQADK 1030
Query: 1854 HRIELQFKVGDSVLVKLQPYRQHSVALRKNNKLSMRYFGPFEILERIGSVAYKLKLPATA 2033
HR + F+VGD VLVKLQPYRQ+S+ALRK+ KL MR+FGPF I+E++G VAYKL+LP A
Sbjct: 1031 HRRHVVFEVGDKVLVKLQPYRQNSIALRKHQKLGMRFFGPFTIIEKVGMVAYKLQLPTEA 1090
Query: 2034 KIHPVFHISQLKLFK 2078
+IHPVFHISQLKLFK
Sbjct: 1091 RIHPVFHISQLKLFK 1105
Score = 306 bits (785), Expect(4) = 0.0
Identities = 151/202 (74%), Positives = 167/202 (82%)
Frame = +2
Query: 89 FFDDILVYSSSWKAHLIHLELVLQTLKRHQLYARLS*CSFGLLEVDYLGHTVSGKGVAMD 268
FFDDILVYS S+ HL HLE VLQ L+ H L+ +LS CSFG+ EVDYLGHTVSG GVAMD
Sbjct: 440 FFDDILVYSPSFSTHLQHLETVLQILQHHTLFVKLSKCSFGMKEVDYLGHTVSGSGVAMD 499
Query: 269 KEKVKAVQEWPKPVNVKQVRGFLGLTGYYRRFIKAYANIAAPLTDLLKKEGFKWTGEAEN 448
K KV+ V +WPKP NVKQ+RGFLGLTGYYRRFIK+YA IA PLT+LLKKE F+W AE
Sbjct: 500 KLKVQTVLDWPKPTNVKQLRGFLGLTGYYRRFIKSYATIATPLTNLLKKEAFEWNSNAEQ 559
Query: 449 ALVKLKEAVTEVSVLGLPNFDQPFTLETDASGIGVDAVLSQNGHPIAYFSKKMVPRMQKQ 628
A LK A+T VL LP F+QPFTLETDASG GV AVLSQ GHPIA+FSKKMVPRMQKQ
Sbjct: 560 AFSHLKSAITSAPVLALPQFNQPFTLETDASGTGVGAVLSQGGHPIAFFSKKMVPRMQKQ 619
Query: 629 SAYTRKLFAITEAIAKFRHYLV 694
SAYTR+LFAITEAIAKFRHYL+
Sbjct: 620 SAYTRELFAITEAIAKFRHYLL 641
Score = 89.0 bits (219), Expect(4) = 0.0
Identities = 42/66 (63%), Positives = 46/66 (69%)
Frame = +1
Query: 685 LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADELSRMF 864
LLGHKF IKT TPEQQAWLHKF+GYDF IEYKP K+NVAAD LSR+
Sbjct: 640 LLGHKFTIKTDQKSLRSLMDQSLQTPEQQAWLHKFIGYDFNIEYKPGKENVAADALSRVL 699
Query: 865 FMAWSE 882
+AWSE
Sbjct: 700 LVAWSE 705
Score = 53.1 bits (126), Expect(4) = 0.0
Identities = 25/31 (80%), Positives = 27/31 (87%)
Frame = +1
Query: 1 MPFGLTNAPATFQSLMNHIFQKELRKFVLVF 93
MPFGLTNAPA+FQ LMN IFQ LRK+VLVF
Sbjct: 410 MPFGLTNAPASFQCLMNQIFQPLLRKYVLVF 440
>gb|PNY16560.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
Length = 1525
Score = 548 bits (1413), Expect(4) = 0.0
Identities = 264/398 (66%), Positives = 317/398 (79%)
Frame = +3
Query: 885 RQQISGNSDLQKIIQGCAQNVDAEQHYSVKQNLLYWKDRLVIPEKNSLIQNILNEYHSSP 1064
+Q + ++Q+I +N H ++K +L++WK RL++P+ + + IL E+H+S
Sbjct: 1001 KQACNQEEEIQQIKLKWNENRGYNPHVTIKDDLVFWKGRLMVPQVSHIRDQILQEFHNSA 1060
Query: 1065 IGGHAGVARTIARITAQFYWPGLKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQV 1244
IGGHAG+ART+ARITAQFYW +KND+ FVQ+CVVCQQAK PAGLLQPLPIP QV
Sbjct: 1061 IGGHAGIARTMARITAQFYWKNMKNDITHFVQQCVVCQQAKHETRNPAGLLQPLPIPDQV 1120
Query: 1245 WEDMAMDFITGLPNSFGSTVIMVVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGI 1424
WED+AMDFITGLPNS+G TVIMVVIDRL+KY+HF ++TDY SK VAE FM NIVKLHG+
Sbjct: 1121 WEDVAMDFITGLPNSYGFTVIMVVIDRLSKYSHFSPLKTDYSSKIVAEVFMRNIVKLHGV 1180
Query: 1425 PKSIVSDRDKVFTSSFWQHLFKLQGTTLAMSTAYHPQSDGQSEALNKCLEMYLRCFTFDN 1604
PKSIVSDRDKVF S FW+ LF+LQGTTLAM++AYHPQSDGQSEALNKCLEMYLRC TF N
Sbjct: 1181 PKSIVSDRDKVFMSKFWKELFQLQGTTLAMTSAYHPQSDGQSEALNKCLEMYLRCLTFQN 1240
Query: 1605 PKGWFKILAWAEYWYNSAYHNSLGMTPFQALYGREPPGLVRKVLTVAENTEVTAQLADRE 1784
PK WFK L AE WYN+A+H SLGMTPF+ LYGR+PP ++R+ + + T QL DR+
Sbjct: 1241 PKSWFKALDLAELWYNTAFHTSLGMTPFKLLYGRDPPTIIRQESSTSGATMAQQQLQDRD 1300
Query: 1785 ILLQQLKGNLNKAQQRMKTQADKHRIELQFKVGDSVLVKLQPYRQHSVALRKNNKLSMRY 1964
+L Q K NL +AQQ MKTQADK R ELQ +VGD+VLVKLQPYRQ SVALRKN KL MRY
Sbjct: 1301 AILTQAKLNLERAQQYMKTQADKRRHELQLEVGDNVLVKLQPYRQQSVALRKNQKLGMRY 1360
Query: 1965 FGPFEILERIGSVAYKLKLPATAKIHPVFHISQLKLFK 2078
FGPF ++ +IG+VAYKL+LP AKIHPVFHISQLKLFK
Sbjct: 1361 FGPFTVMAKIGTVAYKLQLPPEAKIHPVFHISQLKLFK 1398
Score = 289 bits (739), Expect(4) = 0.0
Identities = 139/202 (68%), Positives = 165/202 (81%)
Frame = +2
Query: 89 FFDDILVYSSSWKAHLIHLELVLQTLKRHQLYARLS*CSFGLLEVDYLGHTVSGKGVAMD 268
FFDDILVYS S+ AHL HLE+VLQ L+ H L+ +LS C+FG+ +VDYLGHTV G GVAMD
Sbjct: 726 FFDDILVYSPSFAAHLKHLEIVLQILQDHTLFVKLSKCAFGIQQVDYLGHTVLGSGVAMD 785
Query: 269 KEKVKAVQEWPKPVNVKQVRGFLGLTGYYRRFIKAYANIAAPLTDLLKKEGFKWTGEAEN 448
+ K++ V +WP P N+KQ+RGFLGLTGYYR+FIK+YA IA PLT+LLKK+ FKW AE
Sbjct: 786 RSKIQTVLDWPTPENIKQLRGFLGLTGYYRKFIKSYAQIATPLTELLKKDAFKWNHAAEM 845
Query: 449 ALVKLKEAVTEVSVLGLPNFDQPFTLETDASGIGVDAVLSQNGHPIAYFSKKMVPRMQKQ 628
A LK+A+T VL LP F PFTLETDASG G+ AVLSQNGHPIA+FS+K+ PRMQKQ
Sbjct: 846 AFSTLKKAITSAPVLALPQFTIPFTLETDASGSGIGAVLSQNGHPIAFFSRKLGPRMQKQ 905
Query: 629 SAYTRKLFAITEAIAKFRHYLV 694
SAYTR+ FAITEAIAKFRHYL+
Sbjct: 906 SAYTREFFAITEAIAKFRHYLL 927
Score = 87.8 bits (216), Expect(4) = 0.0
Identities = 39/66 (59%), Positives = 47/66 (71%)
Frame = +1
Query: 685 LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADELSRMF 864
LLGHKF+IKT TPEQQAWLHKF+GYDF +EYKP K+N+AAD LSR+
Sbjct: 926 LLGHKFIIKTDQKSLKSLMDQSLQTPEQQAWLHKFLGYDFTVEYKPGKENLAADALSRVM 985
Query: 865 FMAWSE 882
+AWS+
Sbjct: 986 LLAWSQ 991
Score = 54.3 bits (129), Expect(4) = 0.0
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +1
Query: 1 MPFGLTNAPATFQSLMNHIFQKELRKFVLVF 93
MPFGLTNAPA+FQ LMN IFQ LRKFVLVF
Sbjct: 696 MPFGLTNAPASFQCLMNQIFQPFLRKFVLVF 726
>dbj|GAU25204.1| hypothetical protein TSUD_151040 [Trifolium subterraneum]
Length = 1512
Score = 556 bits (1433), Expect(4) = 0.0
Identities = 263/389 (67%), Positives = 318/389 (81%)
Frame = +3
Query: 912 LQKIIQGCAQNVDAEQHYSVKQNLLYWKDRLVIPEKNSLIQNILNEYHSSPIGGHAGVAR 1091
L KI CAQ+ HY++K +LL+WK R+VIP +LIQ +L E H+SP+GGHAG+ R
Sbjct: 1009 LVKIRMECAQHSQPGSHYTIKDDLLFWKQRIVIPHDGALIQQVLYELHTSPLGGHAGITR 1068
Query: 1092 TIARITAQFYWPGLKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQVWEDMAMDFI 1271
T+AR+ AQFYW +K D+ ++VQ C +CQ+AK+ NT PAGLLQPLPIPSQVWED+AMDFI
Sbjct: 1069 TVARVKAQFYWSDMKKDIVEYVQNCEICQKAKTANTLPAGLLQPLPIPSQVWEDVAMDFI 1128
Query: 1272 TGLPNSFGSTVIMVVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGIPKSIVSDRD 1451
TGLP S G TVI+VVIDRLTKYAHF+ ++TDY SK VAEAFM +IVKLHG+PKSIVSDRD
Sbjct: 1129 TGLPLSHGYTVILVVIDRLTKYAHFIPLKTDYTSKIVAEAFMHHIVKLHGMPKSIVSDRD 1188
Query: 1452 KVFTSSFWQHLFKLQGTTLAMSTAYHPQSDGQSEALNKCLEMYLRCFTFDNPKGWFKILA 1631
KVFTS+FWQ LFKLQGT+LAMS+AYHPQSDGQSE LN+ LE++LRCFTF+NPK W+K L+
Sbjct: 1189 KVFTSNFWQQLFKLQGTSLAMSSAYHPQSDGQSEVLNRTLELFLRCFTFNNPKAWYKALS 1248
Query: 1632 WAEYWYNSAYHNSLGMTPFQALYGREPPGLVRKVLTVAENTEVTAQLADREILLQQLKGN 1811
W+E+WYN+A+ S+GMTPF+ALYGR+PP LVR + + +L R+ LLQQLK N
Sbjct: 1249 WSEFWYNTAFQTSIGMTPFKALYGRDPPTLVRYEAQAGDPPALQEELMGRDKLLQQLKSN 1308
Query: 1812 LNKAQQRMKTQADKHRIELQFKVGDSVLVKLQPYRQHSVALRKNNKLSMRYFGPFEILER 1991
L +AQQ MK QADKHR +++ +VGD VLVKLQPYRQ S+ALRKN KL MRYFGPFEIL +
Sbjct: 1309 LERAQQYMKRQADKHRRDIKLQVGDLVLVKLQPYRQQSLALRKNQKLGMRYFGPFEILAK 1368
Query: 1992 IGSVAYKLKLPATAKIHPVFHISQLKLFK 2078
+G VAYKLKLP AKIHPVFHISQLK FK
Sbjct: 1369 VGEVAYKLKLPDHAKIHPVFHISQLKPFK 1397
Score = 278 bits (710), Expect(4) = 0.0
Identities = 131/202 (64%), Positives = 165/202 (81%)
Frame = +2
Query: 89 FFDDILVYSSSWKAHLIHLELVLQTLKRHQLYARLS*CSFGLLEVDYLGHTVSGKGVAMD 268
FFDDILVYS +W+ HL HL VLQ L+ ++L+ +LS CSFG+ E++YLGH V+G+GV+MD
Sbjct: 725 FFDDILVYSKTWQEHLKHLAAVLQVLQDNELFVKLSKCSFGVSEIEYLGHVVNGQGVSMD 784
Query: 269 KEKVKAVQEWPKPVNVKQVRGFLGLTGYYRRFIKAYANIAAPLTDLLKKEGFKWTGEAEN 448
KEK++AV +WP P N+KQ+RGFL LTGYYRRFI++YA IA+PLTDLLKKE + WT +A+
Sbjct: 785 KEKIQAVLDWPPPKNIKQLRGFLCLTGYYRRFIQSYAKIASPLTDLLKKEAYVWTTQAKA 844
Query: 449 ALVKLKEAVTEVSVLGLPNFDQPFTLETDASGIGVDAVLSQNGHPIAYFSKKMVPRMQKQ 628
A +LK A+T VL LPNF + F LETDASG+G+ AVL Q GHPIAYFSKK+VPR QK+
Sbjct: 845 AFQQLKNAITSAPVLALPNFTKTFILETDASGVGIGAVLHQEGHPIAYFSKKLVPRNQKK 904
Query: 629 SAYTRKLFAITEAIAKFRHYLV 694
SAY R++ AI EAIAKFRHYL+
Sbjct: 905 SAYFREMLAIAEAIAKFRHYLL 926
Score = 85.5 bits (210), Expect(4) = 0.0
Identities = 40/71 (56%), Positives = 47/71 (66%)
Frame = +1
Query: 685 LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADELSRMF 864
LLGHKF+I+T TP+QQ WLH+F+GYDF IEYKP KDNV AD LSR+
Sbjct: 925 LLGHKFIIRTDQKSLRNLMEQTLQTPDQQEWLHRFLGYDFSIEYKPGKDNVVADALSRVM 984
Query: 865 FMAWSERGNRL 897
+AWSE RL
Sbjct: 985 TLAWSEPQFRL 995
Score = 56.6 bits (135), Expect(4) = 0.0
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +1
Query: 1 MPFGLTNAPATFQSLMNHIFQKELRKFVLVF 93
MPFGLTNAPATFQSLMN IFQ LRK+VLVF
Sbjct: 695 MPFGLTNAPATFQSLMNTIFQNVLRKYVLVF 725
>dbj|GAU29525.1| hypothetical protein TSUD_115470 [Trifolium subterraneum]
Length = 1556
Score = 540 bits (1392), Expect(4) = 0.0
Identities = 258/397 (64%), Positives = 317/397 (79%)
Frame = +3
Query: 885 RQQISGNSDLQKIIQGCAQNVDAEQHYSVKQNLLYWKDRLVIPEKNSLIQNILNEYHSSP 1064
R +I ++ L++IIQ C N A+ +Y+VK NLL+W+ RLVIPE ++LIQ IL E+HSSP
Sbjct: 1017 RLEIQQDTHLKEIIQQCLNNSCADANYTVKDNLLFWQQRLVIPENSTLIQKILLEFHSSP 1076
Query: 1065 IGGHAGVARTIARITAQFYWPGLKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQV 1244
IGGH+G+ RT+ARI +QFYW ++ + F++ CV+CQQAK+ T PAGLL PLPIP+ V
Sbjct: 1077 IGGHSGITRTMARIASQFYWTHMRQHIVAFIKHCVICQQAKTTTTTPAGLLAPLPIPTLV 1136
Query: 1245 WEDMAMDFITGLPNSFGSTVIMVVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGI 1424
W D+AMDFITGLP S G TVI+VVIDRLTKYAHF +++D+ SK VAE FM NIVKLHG+
Sbjct: 1137 WADIAMDFITGLPPSNGFTVILVVIDRLTKYAHFFPLKSDFDSKKVAEIFMQNIVKLHGM 1196
Query: 1425 PKSIVSDRDKVFTSSFWQHLFKLQGTTLAMSTAYHPQSDGQSEALNKCLEMYLRCFTFDN 1604
P SIVSDRDKVFTS+FW+HLFKL GTTLAM++AYHPQSDGQSE LNKC+EMYLRC TFDN
Sbjct: 1197 PSSIVSDRDKVFTSAFWRHLFKLHGTTLAMTSAYHPQSDGQSEVLNKCVEMYLRCMTFDN 1256
Query: 1605 PKGWFKILAWAEYWYNSAYHNSLGMTPFQALYGREPPGLVRKVLTVAENTEVTAQLADRE 1784
P W K L W E+WYN++YH S MTPF+ALYG +PP LVR T ++ ++ QLA+RE
Sbjct: 1257 PTKWSKALPWTEFWYNTSYHTSAAMTPFKALYGSDPPQLVRTKGTTDDHPDLQTQLAERE 1316
Query: 1785 ILLQQLKGNLNKAQQRMKTQADKHRIELQFKVGDSVLVKLQPYRQHSVALRKNNKLSMRY 1964
LL QL+ NL+KAQQ MK QADK R ++FKV D VLVKLQPYRQ SVALRK+ KL +RY
Sbjct: 1317 DLLSQLQVNLHKAQQAMKFQADKKRHHVEFKVDDQVLVKLQPYRQSSVALRKHQKLGLRY 1376
Query: 1965 FGPFEILERIGSVAYKLKLPATAKIHPVFHISQLKLF 2075
FGPF I+ ++G VAY+L LP+T KIHPVFH+SQLKLF
Sbjct: 1377 FGPFPIVAKVGVVAYRLGLPSTTKIHPVFHVSQLKLF 1413
Score = 285 bits (729), Expect(4) = 0.0
Identities = 138/202 (68%), Positives = 160/202 (79%)
Frame = +2
Query: 89 FFDDILVYSSSWKAHLIHLELVLQTLKRHQLYARLS*CSFGLLEVDYLGHTVSGKGVAMD 268
FFDDILVYS W AHL HLE VL TLK+ LY +LS CSFG+L+VDYLGHTVSG GVAMD
Sbjct: 742 FFDDILVYSPDWSAHLDHLERVLLTLKQQVLYVKLSKCSFGMLQVDYLGHTVSGMGVAMD 801
Query: 269 KEKVKAVQEWPKPVNVKQVRGFLGLTGYYRRFIKAYANIAAPLTDLLKKEGFKWTGEAEN 448
KEKV+ + +WP P+NVKQ+RGFLGLTGYYRRFIKAY+ IAAPLT+LLKKEGF W A
Sbjct: 802 KEKVRVIADWPLPINVKQLRGFLGLTGYYRRFIKAYSQIAAPLTNLLKKEGFHWDDTATT 861
Query: 449 ALVKLKEAVTEVSVLGLPNFDQPFTLETDASGIGVDAVLSQNGHPIAYFSKKMVPRMQKQ 628
A LK ++ VL LP+F +PF LETDAS G+ A+LSQ GHPIA+FSKK+ P QKQ
Sbjct: 862 AFYNLKLVISTAPVLALPDFSKPFILETDASNTGIGAILSQEGHPIAFFSKKLGPTAQKQ 921
Query: 629 SAYTRKLFAITEAIAKFRHYLV 694
SAY R+ AITEA+AKFRHYL+
Sbjct: 922 SAYVREFRAITEALAKFRHYLL 943
Score = 83.6 bits (205), Expect(4) = 0.0
Identities = 38/66 (57%), Positives = 46/66 (69%)
Frame = +1
Query: 685 LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADELSRMF 864
LLGHKF+I+T TPEQQAWLHKF+G+DF IEYKP K+N+A D LSR+
Sbjct: 942 LLGHKFIIRTDQKSLKALLEQTLQTPEQQAWLHKFIGFDFTIEYKPGKENLAVDALSRIN 1001
Query: 865 FMAWSE 882
+AWSE
Sbjct: 1002 LLAWSE 1007
Score = 52.4 bits (124), Expect(4) = 0.0
Identities = 24/31 (77%), Positives = 27/31 (87%)
Frame = +1
Query: 1 MPFGLTNAPATFQSLMNHIFQKELRKFVLVF 93
MPFGL+NAPA+FQ LMN +FQ LRKFVLVF
Sbjct: 712 MPFGLSNAPASFQCLMNEVFQFALRKFVLVF 742
>gb|PNX92398.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
Length = 1571
Score = 515 bits (1326), Expect(4) = 0.0
Identities = 238/395 (60%), Positives = 304/395 (76%)
Frame = +3
Query: 894 ISGNSDLQKIIQGCAQNVDAEQHYSVKQNLLYWKDRLVIPEKNSLIQNILNEYHSSPIGG 1073
++ + L +I C + HY VK ++L+WK+RLVIP+K LIQ +L E+HSS +GG
Sbjct: 1040 VNDDPALAEIRNQCLLGTNTAPHYQVKHDMLFWKNRLVIPQKPELIQLLLTEFHSSALGG 1099
Query: 1074 HAGVARTIARITAQFYWPGLKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQVWED 1253
HAG+ RT AR+ +QF+WP + D+++FV KC++CQQAK PAGLL PLPIP Q+WED
Sbjct: 1100 HAGITRTKARVASQFFWPTMAKDIKEFVSKCLICQQAKHSTAVPAGLLHPLPIPQQIWED 1159
Query: 1254 MAMDFITGLPNSFGSTVIMVVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGIPKS 1433
++MDFI GLP S TVI+VV+DRL+KY+HF+ ++ DY S VAEAF+ IVKLHG PK+
Sbjct: 1160 LSMDFIIGLPPSHTYTVILVVVDRLSKYSHFIPLKGDYTSSKVAEAFVNTIVKLHGFPKT 1219
Query: 1434 IVSDRDKVFTSSFWQHLFKLQGTTLAMSTAYHPQSDGQSEALNKCLEMYLRCFTFDNPKG 1613
IVSDRD+VFTS FWQHLFK+ GTTLAMSTAYHPQ+DGQSEA+NKCLE+YLRCFT D+PK
Sbjct: 1220 IVSDRDRVFTSQFWQHLFKISGTTLAMSTAYHPQTDGQSEAVNKCLELYLRCFTSDSPKQ 1279
Query: 1614 WFKILAWAEYWYNSAYHNSLGMTPFQALYGREPPGLVRKVLTVAENTEVTAQLADREILL 1793
W K+L WAE+WYN+++H S+GMTPF+ +YGR+PP L+R + + + L +R+ +
Sbjct: 1280 WVKLLPWAEFWYNTSFHTSIGMTPFKVVYGRDPPSLIRYEVNNDDPPLLQQLLTERDDTI 1339
Query: 1794 QQLKGNLNKAQQRMKTQADKHRIELQFKVGDSVLVKLQPYRQHSVALRKNNKLSMRYFGP 1973
LK NL +AQQ MK AD R ++F+VGD VLVKLQPYRQHSV LR+N KLSMRYFGP
Sbjct: 1340 ITLKANLARAQQIMKKFADNKRRFVEFQVGDMVLVKLQPYRQHSVVLRRNQKLSMRYFGP 1399
Query: 1974 FEILERIGSVAYKLKLPATAKIHPVFHISQLKLFK 2078
F ++ERIG VAYKL LP +AKIHPVFH+S LKL K
Sbjct: 1400 FPVIERIGQVAYKLMLPPSAKIHPVFHVSALKLCK 1434
Score = 282 bits (722), Expect(4) = 0.0
Identities = 136/202 (67%), Positives = 164/202 (81%)
Frame = +2
Query: 89 FFDDILVYSSSWKAHLIHLELVLQTLKRHQLYARLS*CSFGLLEVDYLGHTVSGKGVAMD 268
FFDDILVYS SW HL HLE+VL+ L+ +QL+A+ S C FGL VDYLGHT+S +GV MD
Sbjct: 762 FFDDILVYSPSWSTHLEHLEVVLRVLQENQLFAKFSKCCFGLTSVDYLGHTISNQGVEMD 821
Query: 269 KEKVKAVQEWPKPVNVKQVRGFLGLTGYYRRFIKAYANIAAPLTDLLKKEGFKWTGEAEN 448
K K++AV EW P ++KQ+RGFLGL+GYYRRFI+ YA IA+PLT+LLKK+ F+WT A
Sbjct: 822 KSKIQAVMEWKIPSSLKQLRGFLGLSGYYRRFIRNYAAIASPLTELLKKDAFQWTSTATE 881
Query: 449 ALVKLKEAVTEVSVLGLPNFDQPFTLETDASGIGVDAVLSQNGHPIAYFSKKMVPRMQKQ 628
A KLK+A+T+ VL LP+F PFTLETDASG GV AVLSQ HPIAYFSKK+ PRMQKQ
Sbjct: 882 AFNKLKQAITQAPVLSLPDFRLPFTLETDASGSGVGAVLSQARHPIAYFSKKLCPRMQKQ 941
Query: 629 SAYTRKLFAITEAIAKFRHYLV 694
SAY R+L+AITEA+AKFRHYL+
Sbjct: 942 SAYVRELYAITEALAKFRHYLI 963
Score = 82.4 bits (202), Expect(4) = 0.0
Identities = 40/75 (53%), Positives = 48/75 (64%)
Frame = +1
Query: 685 LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADELSRMF 864
L+GHKFVIKT TPEQQ WLHKF+GYDF IEYKP DN+AAD LSR F
Sbjct: 962 LIGHKFVIKTDQRSLKSLTDQSIQTPEQQHWLHKFLGYDFTIEYKPGVDNIAADSLSRSF 1021
Query: 865 FMAWSERGNRLAVIV 909
A S + ++L ++
Sbjct: 1022 CFALSVQTSQLVAMI 1036
Score = 54.3 bits (129), Expect(4) = 0.0
Identities = 24/31 (77%), Positives = 29/31 (93%)
Frame = +1
Query: 1 MPFGLTNAPATFQSLMNHIFQKELRKFVLVF 93
MPFGL+NAPA+FQSLMN +F+ +LRKFVLVF
Sbjct: 732 MPFGLSNAPASFQSLMNSVFRDQLRKFVLVF 762
>gb|PNX98300.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
Length = 1139
Score = 508 bits (1308), Expect(4) = 0.0
Identities = 242/395 (61%), Positives = 299/395 (75%)
Frame = +3
Query: 885 RQQISGNSDLQKIIQGCAQNVDAEQHYSVKQNLLYWKDRLVIPEKNSLIQNILNEYHSSP 1064
R I + +L I C + + Y+V+ ++L+WK+RLV+P+ ++ IL EYH+SP
Sbjct: 561 RLAIQQDHELAAIKALCIEGKAPDPFYTVQHDMLFWKNRLVVPKSPHIVNQILLEYHASP 620
Query: 1065 IGGHAGVARTIARITAQFYWPGLKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQV 1244
+GGH+GV RT ARI QF+WP + D+ FV +C+ CQQAKS PAGLLQPLPIP Q+
Sbjct: 621 VGGHSGVQRTKARICQQFFWPHMSKDITKFVTECLTCQQAKSSTALPAGLLQPLPIPLQI 680
Query: 1245 WEDMAMDFITGLPNSFGSTVIMVVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGI 1424
WED+AMDFITGLP S G TVI VV+DRL+KY HF +++D+ + VA AF NIVKLHGI
Sbjct: 681 WEDIAMDFITGLPPSNGFTVIFVVVDRLSKYGHFTPLKSDFDAPKVAAAFFNNIVKLHGI 740
Query: 1425 PKSIVSDRDKVFTSSFWQHLFKLQGTTLAMSTAYHPQSDGQSEALNKCLEMYLRCFTFDN 1604
PKSIVSDRDKVFTS FWQ LF+L GTTLAMSTAYHPQ+DGQSEALNKCLEMYLRCFT N
Sbjct: 741 PKSIVSDRDKVFTSQFWQQLFRLSGTTLAMSTAYHPQTDGQSEALNKCLEMYLRCFTGTN 800
Query: 1605 PKGWFKILAWAEYWYNSAYHNSLGMTPFQALYGREPPGLVRKVLTVAENTEVTAQLADRE 1784
PK W ++L WAEYWYN+A+ NS+ MTPF+A+YGR+PP L+R V + + L +R+
Sbjct: 801 PKSWARLLPWAEYWYNTAFQNSIAMTPFKAVYGRDPPSLIRYVPQSNDPPNLQELLIERD 860
Query: 1785 ILLQQLKGNLNKAQQRMKTQADKHRIELQFKVGDSVLVKLQPYRQHSVALRKNNKLSMRY 1964
++LQQLK NL AQ MK ADK R L+F+VGDSVLVKLQPYRQHSV LRKN KL +RY
Sbjct: 861 VVLQQLKSNLLTAQGFMKKFADKKRRILEFQVGDSVLVKLQPYRQHSVVLRKNQKLGLRY 920
Query: 1965 FGPFEILERIGSVAYKLKLPATAKIHPVFHISQLK 2069
FGPF +L ++G VAY+L+LP KIHPVFH+S LK
Sbjct: 921 FGPFTVLAKVGPVAYRLQLPPGTKIHPVFHVSLLK 955
Score = 286 bits (731), Expect(4) = 0.0
Identities = 139/202 (68%), Positives = 164/202 (81%)
Frame = +2
Query: 89 FFDDILVYSSSWKAHLIHLELVLQTLKRHQLYARLS*CSFGLLEVDYLGHTVSGKGVAMD 268
FFDDILVYS SW HL+HL VLQ L+ H LYA++S CSFG+ ++DYLGH VSG GV MD
Sbjct: 286 FFDDILVYSPSWNEHLLHLHEVLQLLRDHCLYAKVSKCSFGVTKIDYLGHIVSGNGVEMD 345
Query: 269 KEKVKAVQEWPKPVNVKQVRGFLGLTGYYRRFIKAYANIAAPLTDLLKKEGFKWTGEAEN 448
KVKAV EWP P N+KQ+RGFLGLTGYYRRFIK YA IA PLT LLKK+ F+W+ EA +
Sbjct: 346 DSKVKAVMEWPLPCNIKQLRGFLGLTGYYRRFIKNYALIALPLTALLKKDQFQWSSEATD 405
Query: 449 ALVKLKEAVTEVSVLGLPNFDQPFTLETDASGIGVDAVLSQNGHPIAYFSKKMVPRMQKQ 628
A KL++A+T+ VL LPNF + F LETDASG GV AVLSQN HPIA+FSKK+ PRMQ+Q
Sbjct: 406 AFHKLQQAITQAPVLALPNFKEDFVLETDASGSGVGAVLSQNHHPIAFFSKKLNPRMQRQ 465
Query: 629 SAYTRKLFAITEAIAKFRHYLV 694
SAY R+L+AITEA+AKFRHYL+
Sbjct: 466 SAYVRELYAITEAMAKFRHYLL 487
Score = 82.0 bits (201), Expect(4) = 0.0
Identities = 38/71 (53%), Positives = 48/71 (67%)
Frame = +1
Query: 685 LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADELSRMF 864
LLGH+F+I+T TPEQQ WLHKF+G+DF IEYKP +DN+AAD LSR F
Sbjct: 486 LLGHRFIIRTDQKSLKSLMDQTIQTPEQQNWLHKFLGFDFTIEYKPGRDNIAADALSRSF 545
Query: 865 FMAWSERGNRL 897
MA+S + + L
Sbjct: 546 MMAFSSQQSLL 556
Score = 54.3 bits (129), Expect(4) = 0.0
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +1
Query: 1 MPFGLTNAPATFQSLMNHIFQKELRKFVLVF 93
MPFGLTNAPATFQSLMN +FQ LRK VLVF
Sbjct: 256 MPFGLTNAPATFQSLMNQVFQHLLRKCVLVF 286
>dbj|GAU12540.1| hypothetical protein TSUD_182540 [Trifolium subterraneum]
Length = 1451
Score = 561 bits (1446), Expect(4) = 0.0
Identities = 265/398 (66%), Positives = 324/398 (81%)
Frame = +3
Query: 885 RQQISGNSDLQKIIQGCAQNVDAEQHYSVKQNLLYWKDRLVIPEKNSLIQNILNEYHSSP 1064
+ +I ++ I+ C ++ Y++++ +LYWK+R+VIP+K++LIQ +L+E+HSSP
Sbjct: 945 KDEIKADTYWSDIMDKCKSQGNSYLQYTLREGVLYWKNRVVIPKKSALIQQVLHEFHSSP 1004
Query: 1065 IGGHAGVARTIARITAQFYWPGLKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQV 1244
IGGHAG RT+ARI +QFYW +K DV +++Q C +CQQAK NT PAGLLQPLPIPSQV
Sbjct: 1005 IGGHAGFTRTLARIKSQFYWIAMKKDVLEYIQNCAICQQAKHTNTLPAGLLQPLPIPSQV 1064
Query: 1245 WEDMAMDFITGLPNSFGSTVIMVVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGI 1424
WED+AMDFITGLP S+G T I+VVIDRLTKYAHF+ M+TDY SKSVAE FM NIVKLHG+
Sbjct: 1065 WEDIAMDFITGLPLSYGYTTILVVIDRLTKYAHFLPMKTDYSSKSVAEVFMNNIVKLHGM 1124
Query: 1425 PKSIVSDRDKVFTSSFWQHLFKLQGTTLAMSTAYHPQSDGQSEALNKCLEMYLRCFTFDN 1604
PKSIVSDRDKVFTSSFWQHLFKLQGT+LAMS+AYHPQSDGQ+E LNK LE++LRCFTF+N
Sbjct: 1125 PKSIVSDRDKVFTSSFWQHLFKLQGTSLAMSSAYHPQSDGQTEVLNKGLELFLRCFTFNN 1184
Query: 1605 PKGWFKILAWAEYWYNSAYHNSLGMTPFQALYGREPPGLVRKVLTVAENTEVTAQLADRE 1784
PK W+K LAW+E+WYN+A H S+GMTPF+ALYGREPP L R + + + +L +R+
Sbjct: 1185 PKSWYKALAWSEFWYNTALHTSIGMTPFKALYGREPPTLTRYEVQDNDPPALQEELMERD 1244
Query: 1785 ILLQQLKGNLNKAQQRMKTQADKHRIELQFKVGDSVLVKLQPYRQHSVALRKNNKLSMRY 1964
+LQQLK NL +AQQ MK QADKHR+E +F +GD VLVKLQPYRQ SVALRKN KL MRY
Sbjct: 1245 RILQQLKSNLERAQQYMKKQADKHRVEFKFHLGDMVLVKLQPYRQQSVALRKNQKLGMRY 1304
Query: 1965 FGPFEILERIGSVAYKLKLPATAKIHPVFHISQLKLFK 2078
FGPFEI+ +G VAYKLKLP AKIH VFH+SQLK FK
Sbjct: 1305 FGPFEIIACVGKVAYKLKLPDHAKIHLVFHVSQLKPFK 1342
Score = 226 bits (576), Expect(4) = 0.0
Identities = 112/202 (55%), Positives = 144/202 (71%)
Frame = +2
Query: 89 FFDDILVYSSSWKAHLIHLELVLQTLKRHQLYARLS*CSFGLLEVDYLGHTVSGKGVAMD 268
FFDDILVYSS+W+ HL HL+ VL+TL+ + L+ +LS CSFG++E++YLGH V+G+GV+MD
Sbjct: 691 FFDDILVYSSTWQDHLNHLDTVLKTLQDNDLFVKLSKCSFGVVEIEYLGHLVTGQGVSMD 750
Query: 269 KEKVKAVQEWPKPVNVKQVRGFLGLTGYYRRFIKAYANIAAPLTDLLKKEGFKWTGEAEN 448
K+KV+A+ EWP P N+KQ+RGFLGLTGYYRRFIK YA +AAPLTDLLKKE + W + E
Sbjct: 751 KDKVRAILEWPTPNNIKQLRGFLGLTGYYRRFIKHYARLAAPLTDLLKKENYYWNAQTEM 810
Query: 449 ALVKLKEAVTEVSVLGLPNFDQPFTLETDASGIGVDAVLSQNGHPIAYFSKKMVPRMQKQ 628
+LK A+T VL LPNF +PF ETDASG +K+
Sbjct: 811 GFQELKVAMTSAPVLALPNFQKPFIPETDASG---------------------YQGTRKK 849
Query: 629 SAYTRKLFAITEAIAKFRHYLV 694
SAY R++ AI+EAIAKFRHY +
Sbjct: 850 SAYFREMLAISEAIAKFRHYFL 871
Score = 81.3 bits (199), Expect(4) = 0.0
Identities = 36/65 (55%), Positives = 45/65 (69%)
Frame = +1
Query: 688 LGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADELSRMFF 867
LGH+F+I+T TP+QQ WLHKF+GYDF IEYKP K+N+AAD LSR+
Sbjct: 871 LGHRFIIRTDQKSLRSLMDQSLQTPDQQQWLHKFLGYDFVIEYKPGKENLAADALSRVMT 930
Query: 868 MAWSE 882
+AWSE
Sbjct: 931 LAWSE 935
Score = 60.5 bits (145), Expect(4) = 0.0
Identities = 28/31 (90%), Positives = 29/31 (93%)
Frame = +1
Query: 1 MPFGLTNAPATFQSLMNHIFQKELRKFVLVF 93
MPFGLTNAPATFQSLMNHIFQ LRK+VLVF
Sbjct: 661 MPFGLTNAPATFQSLMNHIFQHALRKYVLVF 691
>gb|KYP39589.1| Transposon Ty3-G Gag-Pol polyprotein [Cajanus cajan]
Length = 1510
Score = 504 bits (1297), Expect(4) = 0.0
Identities = 235/395 (59%), Positives = 299/395 (75%)
Frame = +3
Query: 894 ISGNSDLQKIIQGCAQNVDAEQHYSVKQNLLYWKDRLVIPEKNSLIQNILNEYHSSPIGG 1073
+ ++ LQ I+ +Q YS LL+WK R+V+P ++ IL E+HSSP+GG
Sbjct: 977 LGSDTALQPILTAHSQGKALSAPYSFLDGLLFWKGRIVVPNVPAIQNQILQEFHSSPLGG 1036
Query: 1074 HAGVARTIARITAQFYWPGLKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQVWED 1253
H+G+ART AR+ AQF+WPG+ D+++FVQ+C VCQQAK+ PAGLLQPLPIP+Q+WED
Sbjct: 1037 HSGIARTFARVAAQFFWPGMNKDIKNFVQQCCVCQQAKTATVLPAGLLQPLPIPTQIWED 1096
Query: 1254 MAMDFITGLPNSFGSTVIMVVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGIPKS 1433
++MDFI GLP + G TVI V++DRL+KYAHF +++D+ SK VA+ F+ +VKLHG P S
Sbjct: 1097 ISMDFIVGLPPAEGYTVIFVIVDRLSKYAHFAPLKSDFNSKRVADVFLHTVVKLHGFPNS 1156
Query: 1434 IVSDRDKVFTSSFWQHLFKLQGTTLAMSTAYHPQSDGQSEALNKCLEMYLRCFTFDNPKG 1613
IVSDRDKVFTS+FWQHL KL GTTL +STAYHPQSDGQ+EALNKCLEMYLRCFT + PK
Sbjct: 1157 IVSDRDKVFTSTFWQHLLKLSGTTLKLSTAYHPQSDGQTEALNKCLEMYLRCFTHEKPKD 1216
Query: 1614 WFKILAWAEYWYNSAYHNSLGMTPFQALYGREPPGLVRKVLTVAENTEVTAQLADREILL 1793
W K L WAE+WYN+++H+S M+PF+ +YGR+PP LV+ + + + L R+ +L
Sbjct: 1217 WIKFLPWAEFWYNTSFHHSAQMSPFKVVYGRDPPTLVKYSHSATDPPSIQEMLLQRDRVL 1276
Query: 1794 QQLKGNLNKAQQRMKTQADKHRIELQFKVGDSVLVKLQPYRQHSVALRKNNKLSMRYFGP 1973
QLK NL AQQRMK AD+ R+ +F G+ VLVKLQPYRQHS+ALRKN KL +RYFGP
Sbjct: 1277 AQLKVNLMLAQQRMKKYADQKRLHKEFVEGEMVLVKLQPYRQHSLALRKNQKLGLRYFGP 1336
Query: 1974 FEILERIGSVAYKLKLPATAKIHPVFHISQLKLFK 2078
F I +RIGSVAYKL LP AKIHPVFHISQLK F+
Sbjct: 1337 FPIQKRIGSVAYKLLLPDYAKIHPVFHISQLKQFR 1371
Score = 285 bits (728), Expect(4) = 0.0
Identities = 137/202 (67%), Positives = 165/202 (81%)
Frame = +2
Query: 89 FFDDILVYSSSWKAHLIHLELVLQTLKRHQLYARLS*CSFGLLEVDYLGHTVSGKGVAMD 268
FFDDILVYSSSW HL HL+ VL L +H+LYA++S CSFGL +V+YLGH VSG GV+M+
Sbjct: 699 FFDDILVYSSSWFLHLQHLQQVLDILAKHELYAKMSKCSFGLEQVEYLGHVVSGDGVSME 758
Query: 269 KEKVKAVQEWPKPVNVKQVRGFLGLTGYYRRFIKAYANIAAPLTDLLKKEGFKWTGEAEN 448
KV+AV +WP P +KQ+RGFLGLTGYYRRFI+ YA+IA PLTDLLKK+ FKW+ EA+
Sbjct: 759 TSKVQAVIDWPVPKTIKQLRGFLGLTGYYRRFIQGYASIANPLTDLLKKDNFKWSNEADA 818
Query: 449 ALVKLKEAVTEVSVLGLPNFDQPFTLETDASGIGVDAVLSQNGHPIAYFSKKMVPRMQKQ 628
A + LK+A+T VL LP+F QPF LETDASG G+ AVLSQN HPIA+FSKK+ RM KQ
Sbjct: 819 AFIALKQAITTAPVLSLPDFSQPFVLETDASGSGIGAVLSQNKHPIAFFSKKLSNRMTKQ 878
Query: 629 SAYTRKLFAITEAIAKFRHYLV 694
SAYTR+ +AITEAIAKFRHYL+
Sbjct: 879 SAYTREFYAITEAIAKFRHYLL 900
Score = 82.4 bits (202), Expect(4) = 0.0
Identities = 38/63 (60%), Positives = 44/63 (69%)
Frame = +1
Query: 685 LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADELSRMF 864
LLGH+F+I+T TPEQQAWLHKF+GYDF IEYKP +N+AAD LSR F
Sbjct: 899 LLGHRFIIRTDQKSLKSLLDQTLQTPEQQAWLHKFLGYDFSIEYKPGTENLAADALSRSF 958
Query: 865 FMA 873
FMA
Sbjct: 959 FMA 961
Score = 52.8 bits (125), Expect(4) = 0.0
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +1
Query: 1 MPFGLTNAPATFQSLMNHIFQKELRKFVLVF 93
MPFGLTNAPATFQ+LMN IFQ LRK VLVF
Sbjct: 669 MPFGLTNAPATFQNLMNDIFQGLLRKSVLVF 699
>dbj|GAU44596.1| hypothetical protein TSUD_187860 [Trifolium subterraneum]
Length = 1267
Score = 499 bits (1285), Expect(4) = 0.0
Identities = 243/395 (61%), Positives = 298/395 (75%)
Frame = +3
Query: 894 ISGNSDLQKIIQGCAQNVDAEQHYSVKQNLLYWKDRLVIPEKNSLIQNILNEYHSSPIGG 1073
+ +S ++ I+Q A A Q YS+K+ LLYWK RLV+P N L+ +L E+H+SPIGG
Sbjct: 773 LQNDSHMKDIMQKSALGKAAIQ-YSIKEGLLYWKQRLVVPRDNDLLHKLLFEFHTSPIGG 831
Query: 1074 HAGVARTIARITAQFYWPGLKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQVWED 1253
H+G+ RTIARI +QFYWP +KND+ ++VQKCVVCQQAK+ NT+PAGLLQPLPIPSQVWED
Sbjct: 832 HSGITRTIARIKSQFYWPDMKNDIVEYVQKCVVCQQAKTTNTSPAGLLQPLPIPSQVWED 891
Query: 1254 MAMDFITGLPNSFGSTVIMVVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGIPKS 1433
+AMDFITGLP+S+G T IMVV+DRLT+YAHF+AM++DY SK+VAEAFM NIVKLHG+PKS
Sbjct: 892 IAMDFITGLPSSYGYTTIMVVVDRLTQYAHFIAMKSDYTSKTVAEAFMHNIVKLHGMPKS 951
Query: 1434 IVSDRDKVFTSSFWQHLFKLQGTTLAMSTAYHPQSDGQSEALNKCLEMYLRCFTFDNPKG 1613
IVSDRDKVFTS+FWQHLFKLQGT+LAMS+AYHPQSDGQ+E LNK LE++LRCFTF NPK
Sbjct: 952 IVSDRDKVFTSTFWQHLFKLQGTSLAMSSAYHPQSDGQTEVLNKALELFLRCFTFHNPKS 1011
Query: 1614 WFKILAWAEYWYNSAYHNSLGMTPFQALYGREPPGLVRKVLTVAENTEVTAQLADREILL 1793
WFK+L+W+EYWYN+++ S+GMTPFQALYGR PP L + + + +L +R+ +L
Sbjct: 1012 WFKVLSWSEYWYNTSFQTSIGMTPFQALYGRVPPYLTKYEPQSNDPPALQEELIERDRIL 1071
Query: 1794 QQLKGNLNKAQQRMKTQADKHRIELQFKVGDSVLVKLQPYRQHSVALRKNNKLSMRYFGP 1973
QQLK Q SVALRKN KL MRYFGP
Sbjct: 1072 QQLK-------------------------------------QQSVALRKNQKLGMRYFGP 1094
Query: 1974 FEILERIGSVAYKLKLPATAKIHPVFHISQLKLFK 2078
FEI+ +G+VAYKL LP AKIHPVFH+SQLK FK
Sbjct: 1095 FEIISCVGNVAYKLNLPDNAKIHPVFHVSQLKPFK 1129
Score = 280 bits (715), Expect(4) = 0.0
Identities = 133/202 (65%), Positives = 163/202 (80%)
Frame = +2
Query: 89 FFDDILVYSSSWKAHLIHLELVLQTLKRHQLYARLS*CSFGLLEVDYLGHTVSGKGVAMD 268
FFDDIL+YSS+W+ HL HL+ +L L+ + LY +LS CSFG+LE++YLGH V+G+GV+MD
Sbjct: 495 FFDDILIYSSTWQDHLKHLDALLTILQDNTLYVKLSKCSFGVLEIEYLGHIVTGQGVSMD 554
Query: 269 KEKVKAVQEWPKPVNVKQVRGFLGLTGYYRRFIKAYANIAAPLTDLLKKEGFKWTGEAEN 448
K+K+ V WP P NVKQ+RGFLGLTGYYRRFIK+YA IA+PLTDLLKKE ++W +A
Sbjct: 555 KDKINNVINWPVPTNVKQLRGFLGLTGYYRRFIKSYAKIASPLTDLLKKEAYQWNDQAAL 614
Query: 449 ALVKLKEAVTEVSVLGLPNFDQPFTLETDASGIGVDAVLSQNGHPIAYFSKKMVPRMQKQ 628
A +LK AVT VL LPNF PF LETDASG+G+ AVL Q GHPIAYFSKK+VPR QK+
Sbjct: 615 AFQQLKTAVTTAPVLALPNFKMPFILETDASGVGIGAVLHQQGHPIAYFSKKLVPRNQKK 674
Query: 629 SAYTRKLFAITEAIAKFRHYLV 694
SAY R++ AI EAIAKFRHYL+
Sbjct: 675 SAYFREMLAIAEAIAKFRHYLL 696
Score = 85.1 bits (209), Expect(4) = 0.0
Identities = 38/66 (57%), Positives = 46/66 (69%)
Frame = +1
Query: 685 LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADELSRMF 864
LLGHKF+I+T TPEQQ WLHKF+GYDF IEYKP K+N+AAD LSR+
Sbjct: 695 LLGHKFIIRTDQKSLRSLMEQSLQTPEQQEWLHKFLGYDFTIEYKPGKENIAADALSRVM 754
Query: 865 FMAWSE 882
++WSE
Sbjct: 755 TLSWSE 760
Score = 58.9 bits (141), Expect(4) = 0.0
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = +1
Query: 1 MPFGLTNAPATFQSLMNHIFQKELRKFVLVF 93
MPFGLTNAPATFQSLMNHIFQ LR++VLVF
Sbjct: 465 MPFGLTNAPATFQSLMNHIFQHVLRRYVLVF 495
>gb|PNX93203.1| hypothetical protein L195_g016354 [Trifolium pratense]
Length = 869
Score = 542 bits (1397), Expect(3) = 0.0
Identities = 261/387 (67%), Positives = 310/387 (80%), Gaps = 2/387 (0%)
Frame = +3
Query: 924 IQGCAQNVD-AEQHYSVKQN-LLYWKDRLVIPEKNSLIQNILNEYHSSPIGGHAGVARTI 1097
+QG D H V++N L+YW +++V+P+ +L +L E+HSSP+GGHAG+ARTI
Sbjct: 350 LQGLINTSDPVHGHQFVRKNGLVYWNNKIVLPDDKNLKTKLLLEFHSSPVGGHAGIARTI 409
Query: 1098 ARITAQFYWPGLKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQVWEDMAMDFITG 1277
ARI AQF+W +K D++ FVQ C++CQQAK APAGLLQPLPIP QVWED+AMDFITG
Sbjct: 410 ARIAAQFFWKNMKQDIKLFVQNCLICQQAKHDTRAPAGLLQPLPIPEQVWEDIAMDFITG 469
Query: 1278 LPNSFGSTVIMVVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGIPKSIVSDRDKV 1457
LP S G TVIMVVIDRLTKY+HF ++ DY SK+VAE FM +VKLHG+PKSIVSDRDKV
Sbjct: 470 LPPSNGYTVIMVVIDRLTKYSHFSPLKIDYNSKTVAEVFMKTVVKLHGLPKSIVSDRDKV 529
Query: 1458 FTSSFWQHLFKLQGTTLAMSTAYHPQSDGQSEALNKCLEMYLRCFTFDNPKGWFKILAWA 1637
F S FW+ LF+LQGTTL+MS+AYHPQ+DGQSEALNKCLEMYLRC TF NPK WFK L WA
Sbjct: 530 FISKFWKELFQLQGTTLSMSSAYHPQTDGQSEALNKCLEMYLRCLTFQNPKSWFKALDWA 589
Query: 1638 EYWYNSAYHNSLGMTPFQALYGREPPGLVRKVLTVAENTEVTAQLADREILLQQLKGNLN 1817
EYWYN+AYHNSLGMTPFQALYGR PP LVR + + +V QL +R+ L+ LK NL
Sbjct: 590 EYWYNTAYHNSLGMTPFQALYGRTPPTLVRYTHSPTDTLDVQQQLMERDRLIATLKDNLK 649
Query: 1818 KAQQRMKTQADKHRIELQFKVGDSVLVKLQPYRQHSVALRKNNKLSMRYFGPFEILERIG 1997
+AQQ MK QADKHR + QF+VG+ VLVKLQPYRQ+SVALRKN KL MRYFGPF I+E++G
Sbjct: 650 RAQQIMKNQADKHRRDAQFEVGEQVLVKLQPYRQNSVALRKNQKLGMRYFGPFTIIEKVG 709
Query: 1998 SVAYKLKLPATAKIHPVFHISQLKLFK 2078
VAYK++LP AKIHPVFHISQLK FK
Sbjct: 710 KVAYKVQLPVEAKIHPVFHISQLKQFK 736
Score = 263 bits (671), Expect(3) = 0.0
Identities = 129/165 (78%), Positives = 142/165 (86%)
Frame = +2
Query: 200 CSFGLLEVDYLGHTVSGKGVAMDKEKVKAVQEWPKPVNVKQVRGFLGLTGYYRRFIKAYA 379
CSFG+ EVDYLGHTVSG GVAMDK+KV+ V WP+P N+KQ+RGFLGLTGYYRRFIK YA
Sbjct: 103 CSFGMEEVDYLGHTVSGTGVAMDKDKVQTVLAWPQPTNIKQLRGFLGLTGYYRRFIKGYA 162
Query: 380 NIAAPLTDLLKKEGFKWTGEAENALVKLKEAVTEVSVLGLPNFDQPFTLETDASGIGVDA 559
+IA+PLTDLLKKEGFKWT EA A KLK A+T VL LP F PFT+ETDASG GV A
Sbjct: 163 SIASPLTDLLKKEGFKWTAEATMAFDKLKVAITTAPVLALPQFFLPFTIETDASGTGVGA 222
Query: 560 VLSQNGHPIAYFSKKMVPRMQKQSAYTRKLFAITEAIAKFRHYLV 694
VLSQ GHPIA+FSKKMVPRMQKQSAYTR+LFAITEAIAKFRHYL+
Sbjct: 223 VLSQLGHPIAFFSKKMVPRMQKQSAYTRELFAITEAIAKFRHYLL 267
Score = 90.5 bits (223), Expect(3) = 0.0
Identities = 43/66 (65%), Positives = 47/66 (71%)
Frame = +1
Query: 685 LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADELSRMF 864
LLGHKFVI+T TPEQQAW+HKF+GYDF IEYKP KDNVAAD LSR+
Sbjct: 266 LLGHKFVIRTDQKSLRSLMDQSLQTPEQQAWIHKFIGYDFTIEYKPGKDNVAADALSRVC 325
Query: 865 FMAWSE 882
MAWSE
Sbjct: 326 LMAWSE 331
>dbj|GAU19157.1| hypothetical protein TSUD_79800 [Trifolium subterraneum]
Length = 1500
Score = 558 bits (1439), Expect(4) = 0.0
Identities = 259/376 (68%), Positives = 316/376 (84%)
Frame = +3
Query: 951 AEQHYSVKQNLLYWKDRLVIPEKNSLIQNILNEYHSSPIGGHAGVARTIARITAQFYWPG 1130
A YS K+ LLYWK RLVIP ++L+ +L E+H+SPIGGH+ + RT+ARI +QFYWP
Sbjct: 987 APVQYSTKEGLLYWKQRLVIPRDSNLLHKVLFEFHTSPIGGHSSITRTLARIKSQFYWPD 1046
Query: 1131 LKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQVWEDMAMDFITGLPNSFGSTVIM 1310
+K D+ ++VQKC+VCQQAK+ NT+PAGLLQPLPIPSQVWED+AMDFITGLP+SFG IM
Sbjct: 1047 MKKDIIEYVQKCIVCQQAKTTNTSPAGLLQPLPIPSQVWEDIAMDFITGLPSSFGYNTIM 1106
Query: 1311 VVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGIPKSIVSDRDKVFTSSFWQHLFK 1490
VV+DRLTKYA F+ M++DY SKSVAE FM NIVKLHG+PKSIVSDRD+VFTS+FWQHLFK
Sbjct: 1107 VVVDRLTKYADFIPMKSDYTSKSVAETFMHNIVKLHGMPKSIVSDRDRVFTSTFWQHLFK 1166
Query: 1491 LQGTTLAMSTAYHPQSDGQSEALNKCLEMYLRCFTFDNPKGWFKILAWAEYWYNSAYHNS 1670
LQGT+LAMS+AYHPQSDGQ+E LNK LE++LRCFTF+NPK WFK+L+W+EYWYN+++ S
Sbjct: 1167 LQGTSLAMSSAYHPQSDGQTEVLNKALELFLRCFTFNNPKSWFKVLSWSEYWYNTSFQTS 1226
Query: 1671 LGMTPFQALYGREPPGLVRKVLTVAENTEVTAQLADREILLQQLKGNLNKAQQRMKTQAD 1850
+GMTPFQALYGR PP L + V + + A+L +R+ LLQQLK NL +AQQ MK QAD
Sbjct: 1227 IGMTPFQALYGRLPPYLTKYVPQENDPPTLQAELIERDNLLQQLKTNLERAQQYMKKQAD 1286
Query: 1851 KHRIELQFKVGDSVLVKLQPYRQHSVALRKNNKLSMRYFGPFEILERIGSVAYKLKLPAT 2030
KHR ++ ++VGD VL+KLQPYRQHSVALRKN KL MRYFGPFEI+ +G++AYKL LP
Sbjct: 1287 KHRRDISYQVGDFVLIKLQPYRQHSVALRKNQKLGMRYFGPFEIIACVGTIAYKLNLPEN 1346
Query: 2031 AKIHPVFHISQLKLFK 2078
AKIHPVFH+SQLK FK
Sbjct: 1347 AKIHPVFHVSQLKPFK 1362
Score = 214 bits (544), Expect(4) = 0.0
Identities = 113/202 (55%), Positives = 134/202 (66%)
Frame = +2
Query: 89 FFDDILVYSSSWKAHLIHLELVLQTLKRHQLYARLS*CSFGLLEVDYLGHTVSGKGVAMD 268
FFDDIL+YSSSW HL HL++VL L+ + LY +LS CSFG+LE++YLGH V+G+GV+MD
Sbjct: 726 FFDDILIYSSSWYEHLKHLDVVLAILQDNTLYVKLSKCSFGVLEIEYLGHIVTGQGVSMD 785
Query: 269 KEKVKAVQEWPKPVNVKQVRGFLGLTGYYRRFIKAYANIAAPLTDLLKKEGFKWTGEAEN 448
K+KV AV WP P NVKQ+RGFL L
Sbjct: 786 KDKVTAVINWPVPTNVKQLRGFLDL----------------------------------- 810
Query: 449 ALVKLKEAVTEVSVLGLPNFDQPFTLETDASGIGVDAVLSQNGHPIAYFSKKMVPRMQKQ 628
A +LK AVT VL LPNF PF LETDASGIG+ AVL Q GHPIAYFSKK+VPR QK+
Sbjct: 811 AFQQLKSAVTTAPVLALPNFKMPFILETDASGIGIGAVLHQQGHPIAYFSKKLVPRNQKK 870
Query: 629 SAYTRKLFAITEAIAKFRHYLV 694
SAY R++ AI EAIAKFRHYL+
Sbjct: 871 SAYFREMLAIAEAIAKFRHYLL 892
Score = 85.9 bits (211), Expect(4) = 0.0
Identities = 39/66 (59%), Positives = 46/66 (69%)
Frame = +1
Query: 685 LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADELSRMF 864
LLGHKF+I+T TPEQQ WLHKF+GYDF IEYKP KDN+AAD LSR+
Sbjct: 891 LLGHKFIIRTDQKSLRSLMEQSLQTPEQQEWLHKFLGYDFTIEYKPGKDNMAADALSRIM 950
Query: 865 FMAWSE 882
++WSE
Sbjct: 951 TLSWSE 956
Score = 59.3 bits (142), Expect(4) = 0.0
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = +1
Query: 1 MPFGLTNAPATFQSLMNHIFQKELRKFVLVF 93
MPFGLTNAPATFQSLMNHIFQ LR++VLVF
Sbjct: 696 MPFGLTNAPATFQSLMNHIFQHALRRYVLVF 726
>dbj|GAU35592.1| hypothetical protein TSUD_295280 [Trifolium subterraneum]
Length = 1358
Score = 481 bits (1237), Expect(4) = 0.0
Identities = 231/396 (58%), Positives = 287/396 (72%)
Frame = +3
Query: 888 QQISGNSDLQKIIQGCAQNVDAEQHYSVKQNLLYWKDRLVIPEKNSLIQNILNEYHSSPI 1067
Q+I I C + + Y+V+ LLYW +RL IP K+++I IL E+H SPI
Sbjct: 851 QEIQRCDYFYPIFLQCVSDKPLDPAYAVRDGLLYWNNRLAIPPKSAMISKILTEFHDSPI 910
Query: 1068 GGHAGVARTIARITAQFYWPGLKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQVW 1247
GGHAG+ RT+ARI+AQF+WP ++ + +V++C +CQQAK + P GLL PLPIP VW
Sbjct: 911 GGHAGITRTLARISAQFFWPHMRQTISQYVKQCSICQQAKHTTSLPLGLLCPLPIPKHVW 970
Query: 1248 EDMAMDFITGLPNSFGSTVIMVVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGIP 1427
ED+AMDFITG PNS G TVI+VV+DR TK+ HF A++ D+ SK VAE M +IVKL+G+P
Sbjct: 971 EDIAMDFITGFPNSGGFTVILVVVDRFTKFGHFFALKKDFDSKKVAEIMMQHIVKLYGMP 1030
Query: 1428 KSIVSDRDKVFTSSFWQHLFKLQGTTLAMSTAYHPQSDGQSEALNKCLEMYLRCFTFDNP 1607
KSIVSDRDKVFTS FWQHLFKLQGTTLAMS+AYHPQSDGQ+EALNKCLEMYLRC TF NP
Sbjct: 1031 KSIVSDRDKVFTSKFWQHLFKLQGTTLAMSSAYHPQSDGQTEALNKCLEMYLRCLTFANP 1090
Query: 1608 KGWFKILAWAEYWYNSAYHNSLGMTPFQALYGREPPGLVRKVLTVAENTEVTAQLADREI 1787
W K+L A+YWYN+++H S MTPF+ALYG++PP L R
Sbjct: 1091 NIWSKMLHLAQYWYNTSFHTSAAMTPFKALYGKDPPTLTRS------------------- 1131
Query: 1788 LLQQLKGNLNKAQQRMKTQADKHRIELQFKVGDSVLVKLQPYRQHSVALRKNNKLSMRYF 1967
NL+KAQQ MK QADK R+ ++F +GD VLVKLQPYRQ VA R N+K S++YF
Sbjct: 1132 -----NQNLHKAQQAMKFQADKKRLPMEFTIGDMVLVKLQPYRQTVVATRANHKSSLKYF 1186
Query: 1968 GPFEILERIGSVAYKLKLPATAKIHPVFHISQLKLF 2075
GPF + +IGS+AYKL+LP+TA+IHPVFHISQLK F
Sbjct: 1187 GPFPVTAKIGSIAYKLQLPSTARIHPVFHISQLKKF 1222
Score = 288 bits (736), Expect(4) = 0.0
Identities = 137/202 (67%), Positives = 163/202 (80%)
Frame = +2
Query: 89 FFDDILVYSSSWKAHLIHLELVLQTLKRHQLYARLS*CSFGLLEVDYLGHTVSGKGVAMD 268
FFDDILVY+++W +HL+HLE+VLQ L H+L+ +LS CSFG+ EVDYLGHT+ G GV MD
Sbjct: 575 FFDDILVYNATWSSHLLHLEIVLQLLDHHKLFVKLSKCSFGMSEVDYLGHTIFGMGVIMD 634
Query: 269 KEKVKAVQEWPKPVNVKQVRGFLGLTGYYRRFIKAYANIAAPLTDLLKKEGFKWTGEAEN 448
K KV+AV +WP P N+KQ+RGFLGLTGYYRRFIK+YA IA+PLTDLLKK+ F W+ A
Sbjct: 635 KTKVQAVLQWPTPTNLKQLRGFLGLTGYYRRFIKSYATIASPLTDLLKKDSFNWSDNAMK 694
Query: 449 ALVKLKEAVTEVSVLGLPNFDQPFTLETDASGIGVDAVLSQNGHPIAYFSKKMVPRMQKQ 628
A LK+A+T VL LPNF QPF LETDASGIG+ AVLSQ GHPIAYFSKK+ P QKQ
Sbjct: 695 AFNTLKQAITSAPVLILPNFSQPFMLETDASGIGIGAVLSQQGHPIAYFSKKLGPTSQKQ 754
Query: 629 SAYTRKLFAITEAIAKFRHYLV 694
S Y R+ AITEA+AKFRHYL+
Sbjct: 755 SGYLREFRAITEALAKFRHYLL 776
Score = 88.6 bits (218), Expect(4) = 0.0
Identities = 41/66 (62%), Positives = 47/66 (71%)
Frame = +1
Query: 685 LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADELSRMF 864
LLGHKF+I+T TPEQQAWLHKF+G+DF IEYKP KDN AAD LSRMF
Sbjct: 775 LLGHKFIIRTDQQSLESLLDQTLQTPEQQAWLHKFIGFDFTIEYKPGKDNKAADALSRMF 834
Query: 865 FMAWSE 882
++WSE
Sbjct: 835 SLSWSE 840
Score = 57.0 bits (136), Expect(4) = 0.0
Identities = 26/31 (83%), Positives = 29/31 (93%)
Frame = +1
Query: 1 MPFGLTNAPATFQSLMNHIFQKELRKFVLVF 93
MPFGL+NAPA+FQSLMN +FQK LRKFVLVF
Sbjct: 545 MPFGLSNAPASFQSLMNQVFQKVLRKFVLVF 575