BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus22_contig00010936
         (1537 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|GAU49902.1| hypothetical protein TSUD_139580 [Trifolium subt...   171   1e-60
dbj|GAU39350.1| hypothetical protein TSUD_56760 [Trifolium subte...   142   2e-59
gb|PNX92808.1| ribonuclease H [Trifolium pratense]                    179   3e-55
dbj|GAU42618.1| hypothetical protein TSUD_238110 [Trifolium subt...   181   2e-51
gb|PNX71213.1| ribonuclease H [Trifolium pratense]                    171   3e-50
gb|PNX95563.1| ribonuclease H, partial [Trifolium pratense]           172   2e-48
gb|PNX96408.1| hypothetical protein L195_g019614 [Trifolium prat...   172   2e-48
dbj|GAU51479.1| hypothetical protein TSUD_413680 [Trifolium subt...   171   3e-48
gb|PNY07715.1| ribonuclease H [Trifolium pratense]                    171   9e-48
gb|PNY16580.1| ribonuclease H, partial [Trifolium pratense]           179   2e-47
dbj|GAU35043.1| hypothetical protein TSUD_30090 [Trifolium subte...   167   2e-47
ref|XP_021838584.1| uncharacterized protein LOC110778326 [Spinac...   138   3e-47
gb|PNY01158.1| ribonuclease H, partial [Trifolium pratense]           166   4e-47
gb|PNY03092.1| ribonuclease H [Trifolium pratense]                    164   4e-47
gb|PNX96384.1| ribonuclease H, partial [Trifolium pratense]           164   7e-47
ref|XP_015941761.1| uncharacterized protein LOC107467237 [Arachi...   147   2e-46
gb|ABN07997.1| contains similarity to reverse trancriptase, rela...   160   1e-45
gb|PNY02482.1| ribonuclease H, partial [Trifolium pratense]           154   1e-44
gb|PNX98065.1| ribonuclease H [Trifolium pratense]                    154   1e-44
gb|PNY02790.1| ribonuclease H, partial [Trifolium pratense]           154   1e-44

>dbj|GAU49902.1| hypothetical protein TSUD_139580 [Trifolium subterraneum]
          Length = 440

 Score =  171 bits (433), Expect(4) = 1e-60
 Identities = 91/216 (42%), Positives = 122/216 (56%), Gaps = 1/216 (0%)
 Frame = +1

Query: 196 IKGWKEKTSSTAGREILIKMVAQAIPTYFMGCTVCIL*GNG*QILVGK*EWGKKNTLG*L 375
           +KGWKEK  S AGR  LIK VAQAIPTY M  +  IL GNG                   
Sbjct: 145 LKGWKEKNLSFAGRSTLIKAVAQAIPTYLMS-SFLILKGNG------------------- 184

Query: 376 AKAVQIQI*GWNGL-FRSLSDFNESLLAKQGWRFLHNPTSLIAQCLKARYFPRTSFLEAK 552
                       G+ FR L  FNE+LLAKQGWR +  P+SL+AQ LKA+Y+P+  FLEAK
Sbjct: 185 ------------GMGFRDLRAFNEALLAKQGWRLITQPSSLVAQVLKAKYYPKDQFLEAK 232

Query: 553 IGYSPSFTWRSIQNASWIIKKGGLWRVGNGESIKIREDNWLPMQNRFKVWSPKPMGNDLT 732
                S++WRSI  ASW+IKKG  W +G+G++I    DNW+  +    +W+P+P+  +  
Sbjct: 233 SKNQMSYSWRSILQASWVIKKGSYWTIGSGDNINTWTDNWIHQRGNTTMWTPQPLNPNYV 292

Query: 733 HVNQLMKEDKQSWDNTIISASFLLFEAHQILESPLL 840
            V  LM      W+  +I+  F+  EA QIL+ P++
Sbjct: 293 KVKNLMTNSTNEWNTHLINQIFIAHEAQQILKIPII 328



 Score = 45.8 bits (107), Expect(4) = 1e-60
 Identities = 17/41 (41%), Positives = 27/41 (65%)
 Frame = +2

Query: 1007 PPKQAVLLWKILCKAVPVRAKLRNRGVACPLLCPRCHKHID 1129
            PPK + L+W+I+  A+PV+  +  +G+ C  LCPRC   I+
Sbjct: 386  PPKHSHLIWRIINNALPVKGNIFKKGIQCDPLCPRCSTTIE 426



 Score = 45.1 bits (105), Expect(4) = 1e-60
 Identities = 21/40 (52%), Positives = 31/40 (77%)
 Frame = +2

Query: 101 RLSKYLGLPTSVGRSKKQGFDFIKKRVWQKA*LKVGKKKH 220
           + SKYLG+PT +GRSK Q F+FI++++W K  LK  K+K+
Sbjct: 115 QFSKYLGMPTVMGRSKSQVFNFIQEKIWNK--LKGWKEKN 152



 Score = 43.5 bits (101), Expect(4) = 1e-60
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 828  VPLTDTNQPDCYM*GGEKDGMYTVRPGYIKLQEWKAQ-EGKEPESSKIDTGIWKHLWSLC 1004
            +P+ D  Q D     G  DG Y+V+ GY  + +W    +  +  SS      W  LW+L 
Sbjct: 325  IPIIDRTQEDTLTWDGTMDGNYSVKSGYKAIMDWGINTDANKANSSNNPKDFWPKLWNLN 384

Query: 1005 IPP 1013
            +PP
Sbjct: 385  VPP 387


>dbj|GAU39350.1| hypothetical protein TSUD_56760 [Trifolium subterraneum]
          Length = 913

 Score =  142 bits (358), Expect(3) = 2e-59
 Identities = 70/155 (45%), Positives = 89/155 (57%)
 Frame = +1

Query: 418 FRSLSDFNESLLAKQGWRFLHNPTSLIAQCLKARYFPRTSFLEAKIGYSPSFTWRSIQNA 597
           FR L  FNE+LLAKQGWR    P SL+AQ LK +YFP T F++AK G   S+ W+SIQ A
Sbjct: 400 FRDLHAFNEALLAKQGWRLTTEPQSLVAQVLKDKYFPNTQFMQAKQGKKASYAWQSIQKA 459

Query: 598 SWIIKKGGLWRVGNGESIKIREDNWLPMQNRFKVWSPKPMGNDLTHVNQLMKEDKQSWDN 777
           SWI+KK   W VGNG +I I  D W+        W+PKP   +L  V  L+    Q W  
Sbjct: 460 SWILKKACFWLVGNGHNINIWNDRWIHPHGGSHTWTPKPDNTNLNQVKDLIDPQTQCWKE 519

Query: 778 TIISASFLLFEAHQILESPLLIQINLIATCEEGKK 882
            +I+ +FL +EA+QI   PL         C +G K
Sbjct: 520 QLINKTFLPYEANQIRHIPLSPYSTEDTICWQGTK 554



 Score = 69.7 bits (169), Expect(3) = 2e-59
 Identities = 37/107 (34%), Positives = 54/107 (50%)
 Frame = +2

Query: 110 KYLGLPTSVGRSKKQGFDFIKKRVWQKA*LKVGKKKHHQQLEGRFLSKWLLKLFLHTSWG 289
           KYLG PT +GRSKKQ F++I+ RVW+K  LK  K+++                       
Sbjct: 329 KYLGQPTVIGRSKKQTFNYIQDRVWKK--LKGWKERN----------------------- 363

Query: 290 VLCAYFEAMVNRFWWGSKNGERKIHWVSWQKLCKSKYRGGMGFLEAY 430
                  +   R WWGS   ++KIHW+ W+ + K K  GG+GF + +
Sbjct: 364 ------LSFAGRVWWGSNVDQKKIHWLKWKNISKQKKVGGLGFRDLH 404



 Score = 69.3 bits (168), Expect(3) = 2e-59
 Identities = 48/148 (32%), Positives = 66/148 (44%), Gaps = 25/148 (16%)
 Frame = +2

Query: 989  FMELMHPPKQAVLLWKILCKAVPVRAKLRNRGVACPLLCPRCHKHIDPNLVRLKLGG*VS 1168
            F +L +PPKQ  L+W+ L  A+PV+A L  RG+ C  LCPRC++   P  V         
Sbjct: 593  FWKLQNPPKQLHLIWRTLHNALPVKANLITRGIICDSLCPRCNQ--SPETVDHVF----- 645

Query: 1169 T**NCILCSMA*TKSYSG-------------------------EKDTNEQIAAIIYSLWL 1273
                 + C  A    +S                          +KD  + I +IIYS+WL
Sbjct: 646  -----LNCEWAQKVWFSSPLTLKTNNNHTHNFNDWYNYFLNHTDKDYIQTINSIIYSIWL 700

Query: 1274 ARNAKCFENKDIPAIVSVRKAFSNLVEF 1357
            ARN K    KD P  ++V KA   L E+
Sbjct: 701  ARNNKIHNQKDTPVHMTVEKAIQILHEY 728


>gb|PNX92808.1| ribonuclease H [Trifolium pratense]
          Length = 930

 Score =  179 bits (453), Expect(2) = 3e-55
 Identities = 103/231 (44%), Positives = 135/231 (58%), Gaps = 16/231 (6%)
 Frame = +1

Query: 196 IKGWKEKTSSTAGREILIKMVAQAIPTYFMGC-----TVCIL*GNG*QILVGK*EWGKKN 360
           IKGWK +  S AGR  LIK VAQAIPTY M C      +C    +  + ++ K  WG  N
Sbjct: 336 IKGWKAQHLSFAGRSTLIKAVAQAIPTYVMSCFLLPKELC----SHIESMICKFWWGSNN 391

Query: 361 TLG*LAKAVQIQI*GWNGL----------FRSLSDFNESLLAKQGWRFLHNPTSLIAQCL 510
                    +I    W+ +          FR L  FNE+LLAKQGWR +  P S++AQ L
Sbjct: 392 DKR------KIHWIKWSTICKHKKKGGLSFRELRAFNEALLAKQGWRCITQPNSMVAQVL 445

Query: 511 KARYFPRTSFLEAKIGY-SPSFTWRSIQNASWIIKKGGLWRVGNGESIKIREDNWLPMQN 687
           KA+Y+P+T+ LEA IG  + S+TWRSI  ASWI+KKGGLW +GNG +  I  DNWLP Q 
Sbjct: 446 KAKYYPKTTLLEADIGSKNVSYTWRSISKASWILKKGGLWNIGNGATTNIWTDNWLPRQQ 505

Query: 688 RFKVWSPKPMGNDLTHVNQLMKEDKQSWDNTIISASFLLFEAHQILESPLL 840
             K+WSPK      T V  LM  + +SW+  +I  +F+ FEA QI + P++
Sbjct: 506 GHKIWSPKGEATQ-TWVKDLMIPEIRSWNRQLIFDTFMQFEAEQITQIPIV 555



 Score = 67.4 bits (163), Expect(2) = 3e-55
 Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 14/152 (9%)
 Frame = +3

Query: 828  VPLTDTNQPDCYM*GGEKDGMYTVRPGYIKLQEWKAQEGKEPESSK-IDTGIWKHLWSLC 1004
            +P+   ++PD +     KDG+YTV+ GY  +Q+WK    K   S K  +  +W+ LW L 
Sbjct: 552  IPIVHLSRPDEFSWPYTKDGIYTVKSGYQAIQDWKEDPNKPSTSYKPKNNSVWQKLWHLK 611

Query: 1005 IPPNRLCSCGKFCVKLYQLEQSSETEGW----LVPYCAQDAINT---------LTQIWFA 1145
            IPP       +       ++ +    G     L P C ++  +            Q+WFA
Sbjct: 612  IPPKYTHLIWRILQDALPVQSNLRKRGVNCYPLCPRCKENIEDLNHVFSGCWWAKQVWFA 671

Query: 1146 SNLGVRFQPNRIASFAQWLERNLTQGKRIQMN 1241
            S L ++F  N   SF  W+E N+ + +   MN
Sbjct: 672  SPLTLKFDQNEF-SFKNWIEDNIRKDQSQNMN 702



 Score =  106 bits (264), Expect = 2e-20
 Identities = 61/155 (39%), Positives = 83/155 (53%), Gaps = 9/155 (5%)
 Frame = +2

Query: 53  ETKHNFQGWMDMKEDPRLSKYLGLPTSVGRSKKQGFDFIKKRVWQKA*LKVGKKKHHQQL 232
           + K N    + MK     SKYLG+PT VGRSK+Q FD+I+  VW+K     G K  H   
Sbjct: 290 QIKENIGHILPMKRVNHFSKYLGMPTHVGRSKRQVFDYIQDCVWKKI---KGWKAQHLSF 346

Query: 233 EGRF---------LSKWLLKLFLHTSWGVLCAYFEAMVNRFWWGSKNGERKIHWVSWQKL 385
            GR          +  +++  FL      LC++ E+M+ +FWWGS N +RKIHW+ W  +
Sbjct: 347 AGRSTLIKAVAQAIPTYVMSCFLLPK--ELCSHIESMICKFWWGSNNDKRKIHWIKWSTI 404

Query: 386 CKSKYRGGMGFLEAYLTLMNPS*QNKVGDFFITQP 490
           CK K +GG+ F E  L   N +   K G   ITQP
Sbjct: 405 CKHKKKGGLSFRE--LRAFNEALLAKQGWRCITQP 437



 Score = 63.9 bits (154), Expect = 6e-07
 Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 17/155 (10%)
 Frame = +2

Query: 1007 PPKQAVLLWKILCKAVPVRAKLRNRGVACPLLCPRCHKHIDP-----------------N 1135
            PPK   L+W+IL  A+PV++ LR RGV C  LCPRC ++I+                  +
Sbjct: 613  PPKYTHLIWRILQDALPVQSNLRKRGVNCYPLCPRCKENIEDLNHVFSGCWWAKQVWFAS 672

Query: 1136 LVRLKLGG*VST**NCILCSMA*TKSYSGEKDTNEQIAAIIYSLWLARNAKCFENKDIPA 1315
             + LK      +  N I  ++        +      I AI Y +W ARN   F+NK++P 
Sbjct: 673  PLTLKFDQNEFSFKNWIEDNIR-----KDQSQNMNLIGAICYHIWRARNLLTFQNKNVPV 727

Query: 1316 IVSVRKAFSNLVEFQHAVES*GGSASKRTQKSVTN 1420
            +  + +A   L E+   V+      ++ T+    N
Sbjct: 728  LDVIHRAQECLFEYHRQVKPISEQVNRNTRARSNN 762


>dbj|GAU42618.1| hypothetical protein TSUD_238110 [Trifolium subterraneum]
          Length = 588

 Score =  181 bits (458), Expect(2) = 2e-51
 Identities = 102/231 (44%), Positives = 138/231 (59%), Gaps = 16/231 (6%)
 Frame = +1

Query: 196 IKGWKEKTSSTAGREILIKMVAQAIPTYFMGC-----TVCIL*GNG*QILVGK*EWGKKN 360
           IKGWK +  S AGR  LIK VAQAIPTY M C      +C    +  + ++GK  WG   
Sbjct: 61  IKGWKAQHLSFAGRSTLIKAVAQAIPTYVMSCFLLPKALC----SHIESMIGKFWWGSN- 115

Query: 361 TLG*LAKAVQIQI*GWNGL----------FRSLSDFNESLLAKQGWRFLHNPTSLIAQCL 510
                 +  +I    W+ +          FR L  FNE+LLAKQGWR +  P  +  Q L
Sbjct: 116 -----CEKRKIHWIRWSQICKHKKKGGLGFRELRAFNETLLAKQGWRCITQPNCMTTQIL 170

Query: 511 KARYFPRTSFLEAKIGY-SPSFTWRSIQNASWIIKKGGLWRVGNGESIKIREDNWLPMQN 687
           KA+Y+P+ SFLEA++G  + S+TWRSI  ASWI+KK GLW +GNGESIKI  DNWLP Q+
Sbjct: 171 KAKYYPKKSFLEAEVGNKNVSYTWRSISKASWILKKRGLWNIGNGESIKIWNDNWLPRQH 230

Query: 688 RFKVWSPKPMGNDLTHVNQLMKEDKQSWDNTIISASFLLFEAHQILESPLL 840
             K+W+PK   N +  V  LM  + + W+  +I  +F+ FEA QI++ P++
Sbjct: 231 GHKIWTPKGEANQV-WVKDLMIPELRYWNRQLIFDTFMHFEAEQIVQIPIV 280



 Score = 52.4 bits (124), Expect(2) = 2e-51
 Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 14/127 (11%)
 Frame = +3

Query: 828  VPLTDTNQPDCYM*GGEKDGMYTVRPGYIKLQEWKAQEGKEPESSKI-DTGIWKHLWSLC 1004
            +P+     PD +     KD +YTV+ GY  +QEWK    ++  S K  D  +W+ LW L 
Sbjct: 277  IPIVHLVSPDEFSWPCTKDVIYTVKSGYQAIQEWKENYNEQATSYKTNDNRVWQKLWQLK 336

Query: 1005 IPPNRLCSCGKFCVKLYQLEQSSETEG----WLVPYC---AQDAINTLT------QIWFA 1145
            IPP       +       ++++    G     L P C    +D  +  +      Q+WFA
Sbjct: 337  IPPKYTHLIWRILQDSLPVQKNLRKRGVNCYSLCPRCNDKIEDQNHVFSECWWAKQVWFA 396

Query: 1146 SNLGVRF 1166
            S L +RF
Sbjct: 397  SPLTLRF 403



 Score =  105 bits (261), Expect = 3e-20
 Identities = 59/154 (38%), Positives = 85/154 (55%), Gaps = 9/154 (5%)
 Frame = +2

Query: 56  TKHNFQGWMDMKEDPRLSKYLGLPTSVGRSKKQGFDFIKKRVWQKA*LKVGKKKHHQQLE 235
           TK +    + M +  + SKYLG+PT VGRSK+Q FD+++  VW+K     G K  H    
Sbjct: 16  TKLDISHILPMNKVDQFSKYLGMPTHVGRSKRQVFDYVQDCVWKKI---KGWKAQHLSFA 72

Query: 236 GR---------FLSKWLLKLFLHTSWGVLCAYFEAMVNRFWWGSKNGERKIHWVSWQKLC 388
           GR          +  +++  FL      LC++ E+M+ +FWWGS   +RKIHW+ W ++C
Sbjct: 73  GRSTLIKAVAQAIPTYVMSCFLLPK--ALCSHIESMIGKFWWGSNCEKRKIHWIRWSQIC 130

Query: 389 KSKYRGGMGFLEAYLTLMNPS*QNKVGDFFITQP 490
           K K +GG+GF E  L   N +   K G   ITQP
Sbjct: 131 KHKKKGGLGFRE--LRAFNETLLAKQGWRCITQP 162


>gb|PNX71213.1| ribonuclease H [Trifolium pratense]
          Length = 951

 Score =  171 bits (434), Expect(2) = 3e-50
 Identities = 100/222 (45%), Positives = 129/222 (58%), Gaps = 7/222 (3%)
 Frame = +1

Query: 196  IKGWKEKTSSTAGREILIKMVAQAIPTYFMGCTVCIL*GNG*QI--LVGK*EWGKKNTLG 369
            +KGWKEK  S AGR  L+K V QAIPTY M C + +  G   QI  +     WG      
Sbjct: 356  LKGWKEKNLSYAGRGTLLKAVIQAIPTYIMSCFL-LPKGLCKQIESMTSNFWWGSNTDKK 414

Query: 370  *L-----AKAVQIQI*GWNGLFRSLSDFNESLLAKQGWRFLHNPTSLIAQCLKARYFPRT 534
             L      K  + +  G  G FR+   FNE+LLAKQGWR    P SL+A+  KA+YFP+ 
Sbjct: 415  KLHWINWKKMCKNKTQGGYG-FRNTCMFNEALLAKQGWRIATQPDSLVAKVYKAKYFPKC 473

Query: 535  SFLEAKIGYSPSFTWRSIQNASWIIKKGGLWRVGNGESIKIREDNWLPMQNRFKVWSPKP 714
             F+EAK G   S+TWRSI +A WI++KG  W +GNGES+ I +D+WLP QN FKVWS + 
Sbjct: 474  QFMEAKNGNMLSYTWRSILHARWILQKGCFWTIGNGESVNIWKDSWLPKQNGFKVWSTQQ 533

Query: 715  MGNDLTHVNQLMKEDKQSWDNTIISASFLLFEAHQILESPLL 840
                   V  L+      W+  +I   FL FEA+QIL+ PL+
Sbjct: 534  GYTRYNLVKDLINPATNQWNQNLIHQIFLPFEANQILQLPLV 575



 Score = 57.8 bits (138), Expect(2) = 3e-50
 Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 15/144 (10%)
 Frame = +3

Query: 828  VPLTDTNQPDCYM*GGEKDGMYTVRPGYIKLQEWKAQEGKEPESSKIDTGI-WKHLWSLC 1004
            +PL + N  D  +  G KDG+YTV+ GY    EW      +  S+ I T + W++LW L 
Sbjct: 572  LPLVEPNSKDELVWSGTKDGLYTVKSGYHAAMEWNHLRHNQVSSNAIATDLTWQNLWKLK 631

Query: 1005 IPPNRLCSCGKFCVKLYQLEQSSETEG-WLVPYC--AQDAINTLTQ----------IWFA 1145
            IPP       +       +  S  ++G    P C     ++ T+            +WF 
Sbjct: 632  IPPKHATLIWRILNHSLPVRSSLSSKGIQCNPTCPRCNTSLETIDHVFMQCEWAKVVWFG 691

Query: 1146 SNLGVRFQ-PNRIASFAQWLERNL 1214
            S + + F   +R  SF++WL   L
Sbjct: 692  SPMTIHFNTTDRHQSFSEWLSTML 715



 Score = 98.2 bits (243), Expect = 9e-18
 Identities = 57/159 (35%), Positives = 85/159 (53%), Gaps = 9/159 (5%)
 Frame = +2

Query: 41  LITMETKHNFQGWMDMKEDPRLSKYLGLPTSVGRSKKQGFDFIKKRVWQKA*LKVGKKKH 220
           ++  E K      + M      SKYLG+PT +GRSK+Q F++IK RVW+K  LK G K+ 
Sbjct: 306 MVPNEVKVEVNHILPMTRVDHFSKYLGMPTDIGRSKQQIFNYIKDRVWKK--LK-GWKEK 362

Query: 221 HQQLEGR---------FLSKWLLKLFLHTSWGVLCAYFEAMVNRFWWGSKNGERKIHWVS 373
           +    GR          +  +++  FL      LC   E+M + FWWGS   ++K+HW++
Sbjct: 363 NLSYAGRGTLLKAVIQAIPTYIMSCFLLPKG--LCKQIESMTSNFWWGSNTDKKKLHWIN 420

Query: 374 WQKLCKSKYRGGMGFLEAYLTLMNPS*QNKVGDFFITQP 490
           W+K+CK+K +GG GF      + N +   K G    TQP
Sbjct: 421 WKKMCKNKTQGGYGFRNT--CMFNEALLAKQGWRIATQP 457



 Score = 68.9 bits (167), Expect = 2e-08
 Identities = 48/167 (28%), Positives = 85/167 (50%), Gaps = 17/167 (10%)
 Frame = +2

Query: 983  ETFMELMHPPKQAVLLWKILCKAVPVRAKLRNRGVACPLLCPRCH---KHIDPNLVRLK- 1150
            +   +L  PPK A L+W+IL  ++PVR+ L ++G+ C   CPRC+   + ID   ++ + 
Sbjct: 625  QNLWKLKIPPKHATLIWRILNHSLPVRSSLSSKGIQCNPTCPRCNTSLETIDHVFMQCEW 684

Query: 1151 -----LGG*VST**NCILCSMA*TKSYSGEKDTNEQ-----IAAIIYSLWLARNAKCFEN 1300
                  G  ++   N      + ++  S    T  Q     IAA+ Y +W ARN   F++
Sbjct: 685  AKVVWFGSPMTIHFNTTDRHQSFSEWLSTMLKTKNQECMAPIAALTYHIWRARNLLVFQD 744

Query: 1301 KDIPAIVSVRKAFSNLVEFQ---HAVES*GGSASKRTQKSVTNWKTP 1432
            K++P +  V++A S+ +E+Q   H       +A+ + + + TNW  P
Sbjct: 745  KNVPVMCVVQQAISSSIEYQTLGHPHRLPMCAAATQPRGNNTNWTPP 791


>gb|PNX95563.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1188

 Score =  172 bits (436), Expect(2) = 2e-48
 Identities = 101/222 (45%), Positives = 129/222 (58%), Gaps = 7/222 (3%)
 Frame = +1

Query: 196  IKGWKEKTSSTAGREILIKMVAQAIPTYFMGCTVCIL*GNG*QI--LVGK*EWGKKNTLG 369
            +KGWKEK  S AGR  LIK VAQAIPTY M C + I  G   Q+  ++    WG      
Sbjct: 598  LKGWKEKNLSFAGRGTLIKAVAQAIPTYLMSCFL-IPKGVCEQLEKMICNFWWGSTTDQR 656

Query: 370  *L-----AKAVQIQI*GWNGLFRSLSDFNESLLAKQGWRFLHNPTSLIAQCLKARYFPRT 534
             +     +K    +  G  G FR L  FNE+LLAKQGWR +  PTSL+AQ LKA+YFP  
Sbjct: 657  KMHWLKWSKVCNQKRNGGLG-FRDLRAFNEALLAKQGWRLITKPTSLVAQVLKAKYFPNE 715

Query: 535  SFLEAKIGYSPSFTWRSIQNASWIIKKGGLWRVGNGESIKIREDNWLPMQNRFKVWSPKP 714
            SFL AK     S+TWRSI  ASW+IK+G  W +G+GE I I EDNW+  ++      PKP
Sbjct: 716  SFLNAKHKQVMSYTWRSIMQASWVIKRGSYWSIGDGEDINIWEDNWMQQKSATYKGRPKP 775

Query: 715  MGNDLTHVNQLMKEDKQSWDNTIISASFLLFEAHQILESPLL 840
               +L  V +LM  +   W+  II+  FL +EA  IL  P++
Sbjct: 776  NNLNLIKVKELMDSNYNEWNTDIINQVFLPYEAQMILNIPII 817



 Score = 51.2 bits (121), Expect(2) = 2e-48
 Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 14/139 (10%)
 Frame = +3

Query: 828  VPLTDTNQPDCYM*GGEKDGMYTVRPGYIKLQEWKAQEGKEPESSKIDTGIWKHLWSLCI 1007
            +P+ D  QPD       +DG Y+V+ GY  + EW       P ++     IW  LW L +
Sbjct: 814  IPIIDKTQPDMLTWDCTQDGQYSVKSGYHAIMEWGNLPNASPSNN--SQHIWNVLWKLKV 871

Query: 1008 PPNRLCSCGKFCVKLYQLEQSSETEGW----LVPYCAQDAINTL----------TQIWFA 1145
            PP       +       ++ +    G     L P C+ +++ T+           Q WFA
Sbjct: 872  PPKHSHLLWRVLHNALPVKNNLFKRGVRCDPLCPRCS-NSMETIHHVFLDCEWAKQTWFA 930

Query: 1146 SNLGVRFQPNRIASFAQWL 1202
            S L +    N++  F  W+
Sbjct: 931  SALTLNLGQNQLTDFYDWI 949



 Score = 88.6 bits (218), Expect = 1e-14
 Identities = 54/158 (34%), Positives = 81/158 (51%), Gaps = 9/158 (5%)
 Frame = +2

Query: 44   ITMETKHNFQGWMDMKEDPRLSKYLGLPTSVGRSKKQGFDFIKKRVWQKA*LKVGKKKHH 223
            +T   K      + M+     SKYLG+P   GRSK+Q F++I++++W+K  LK G K+ +
Sbjct: 549  VTNGIKEEISRILPMQISEYFSKYLGMPIVHGRSKQQIFNYIREKIWKK--LK-GWKEKN 605

Query: 224  QQLEGR---------FLSKWLLKLFLHTSWGVLCAYFEAMVNRFWWGSKNGERKIHWVSW 376
                GR          +  +L+  FL      +C   E M+  FWWGS   +RK+HW+ W
Sbjct: 606  LSFAGRGTLIKAVAQAIPTYLMSCFLIPKG--VCEQLEKMICNFWWGSTTDQRKMHWLKW 663

Query: 377  QKLCKSKYRGGMGFLEAYLTLMNPS*QNKVGDFFITQP 490
             K+C  K  GG+GF +  L   N +   K G   IT+P
Sbjct: 664  SKVCNQKRNGGLGFRD--LRAFNEALLAKQGWRLITKP 699



 Score = 62.4 bits (150), Expect = 2e-06
 Identities = 55/183 (30%), Positives = 79/183 (43%), Gaps = 20/183 (10%)
 Frame = +2

Query: 995  ELMHPPKQAVLLWKILCKAVPVRAKLRNRGVACPLLCPRC--------HKHID------- 1129
            +L  PPK + LLW++L  A+PV+  L  RGV C  LCPRC        H  +D       
Sbjct: 868  KLKVPPKHSHLLWRVLHNALPVKNNLFKRGVRCDPLCPRCSNSMETIHHVFLDCEWAKQT 927

Query: 1130 --PNLVRLKLGG*VST**NCILCSMA*TKSYSGEKDTNEQIAAIIYSLWLARNAKCFENK 1303
               + + L LG    T     +  M      +  K+  E+I AI+Y +W ARN   F+ K
Sbjct: 928  WFASALTLNLGQNQLTDFYDWINYMI----NNTNKECIEKITAIMYGIWYARNVLVFQGK 983

Query: 1304 DIPAIVSVRKAFSNLVEFQ-HAVES*GGSASKRTQ--KSVTNWKTPNSGKVVAAAAATWS 1474
            ++P       A + L E+Q H +E        R     +  +W  P  G +     A  S
Sbjct: 984  NLPPQEISSTALNQLQEYQTHGLEQHIQDPQVRRNGCSNDISWSPPPRGTLKINVDAHLS 1043

Query: 1475 SPG 1483
            S G
Sbjct: 1044 SDG 1046


>gb|PNX96408.1| hypothetical protein L195_g019614 [Trifolium pratense]
          Length = 548

 Score =  172 bits (436), Expect(2) = 2e-48
 Identities = 101/222 (45%), Positives = 129/222 (58%), Gaps = 7/222 (3%)
 Frame = +1

Query: 196 IKGWKEKTSSTAGREILIKMVAQAIPTYFMGCTVCIL*GNG*QI--LVGK*EWGKKNTLG 369
           +KGWKEK  S AGR  LIK VAQAIPTY M C + I  G   Q+  ++    WG      
Sbjct: 56  LKGWKEKNLSFAGRGTLIKAVAQAIPTYLMSCFL-IPKGVCEQLEKMICNFWWGSTTDQR 114

Query: 370 *L-----AKAVQIQI*GWNGLFRSLSDFNESLLAKQGWRFLHNPTSLIAQCLKARYFPRT 534
            +     +K    +  G  G FR L  FNE+LLAKQGWR +  PTSL+AQ LKA+YFP  
Sbjct: 115 KMHWLKWSKVCNQKRNGGLG-FRDLRAFNEALLAKQGWRLITKPTSLVAQVLKAKYFPNE 173

Query: 535 SFLEAKIGYSPSFTWRSIQNASWIIKKGGLWRVGNGESIKIREDNWLPMQNRFKVWSPKP 714
           SFL AK     S+TWRSI  ASW+IK+G  W +G+GE I I EDNW+  ++      PKP
Sbjct: 174 SFLNAKHKQVMSYTWRSIMQASWVIKRGSYWSIGDGEDINIWEDNWMQQKSATYKGRPKP 233

Query: 715 MGNDLTHVNQLMKEDKQSWDNTIISASFLLFEAHQILESPLL 840
              +L  V +LM  +   W+  II+  FL +EA  IL  P++
Sbjct: 234 NNLNLIKVKELMDSNYNEWNTDIINQVFLPYEAQMILNIPII 275



 Score = 51.2 bits (121), Expect(2) = 2e-48
 Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 14/139 (10%)
 Frame = +3

Query: 828  VPLTDTNQPDCYM*GGEKDGMYTVRPGYIKLQEWKAQEGKEPESSKIDTGIWKHLWSLCI 1007
            +P+ D  QPD       +DG Y+V+ GY  + EW       P ++     IW  LW L +
Sbjct: 272  IPIIDKTQPDMLTWDCTQDGQYSVKSGYHAIMEWGNLPNASPSNN--SQHIWNVLWKLKV 329

Query: 1008 PPNRLCSCGKFCVKLYQLEQSSETEGW----LVPYCAQDAINTL----------TQIWFA 1145
            PP       +       ++ +    G     L P C+ +++ T+           Q WFA
Sbjct: 330  PPKHSHLLWRVLHNALPVKNNLFKRGVRCDPLCPRCS-NSMETIHHVFLDCEWAKQTWFA 388

Query: 1146 SNLGVRFQPNRIASFAQWL 1202
            S L +    N++  F  W+
Sbjct: 389  SALTLNLGQNQLTDFYDWI 407



 Score = 88.6 bits (218), Expect = 7e-15
 Identities = 54/158 (34%), Positives = 81/158 (51%), Gaps = 9/158 (5%)
 Frame = +2

Query: 44  ITMETKHNFQGWMDMKEDPRLSKYLGLPTSVGRSKKQGFDFIKKRVWQKA*LKVGKKKHH 223
           +T   K      + M+     SKYLG+P   GRSK+Q F++I++++W+K  LK G K+ +
Sbjct: 7   VTNGIKEEISRILPMQISEYFSKYLGMPIVHGRSKQQIFNYIREKIWKK--LK-GWKEKN 63

Query: 224 QQLEGR---------FLSKWLLKLFLHTSWGVLCAYFEAMVNRFWWGSKNGERKIHWVSW 376
               GR          +  +L+  FL      +C   E M+  FWWGS   +RK+HW+ W
Sbjct: 64  LSFAGRGTLIKAVAQAIPTYLMSCFLIPKG--VCEQLEKMICNFWWGSTTDQRKMHWLKW 121

Query: 377 QKLCKSKYRGGMGFLEAYLTLMNPS*QNKVGDFFITQP 490
            K+C  K  GG+GF +  L   N +   K G   IT+P
Sbjct: 122 SKVCNQKRNGGLGFRD--LRAFNEALLAKQGWRLITKP 157



 Score = 62.4 bits (150), Expect = 1e-06
 Identities = 55/183 (30%), Positives = 79/183 (43%), Gaps = 20/183 (10%)
 Frame = +2

Query: 995  ELMHPPKQAVLLWKILCKAVPVRAKLRNRGVACPLLCPRC--------HKHID------- 1129
            +L  PPK + LLW++L  A+PV+  L  RGV C  LCPRC        H  +D       
Sbjct: 326  KLKVPPKHSHLLWRVLHNALPVKNNLFKRGVRCDPLCPRCSNSMETIHHVFLDCEWAKQT 385

Query: 1130 --PNLVRLKLGG*VST**NCILCSMA*TKSYSGEKDTNEQIAAIIYSLWLARNAKCFENK 1303
               + + L LG    T     +  M      +  K+  E+I AI+Y +W ARN   F+ K
Sbjct: 386  WFASALTLNLGQNQLTDFYDWINYMI----NNTNKECIEKITAIMYGIWYARNVLVFQGK 441

Query: 1304 DIPAIVSVRKAFSNLVEFQ-HAVES*GGSASKRTQ--KSVTNWKTPNSGKVVAAAAATWS 1474
            ++P       A + L E+Q H +E        R     +  +W  P  G +     A  S
Sbjct: 442  NLPPQEISSTALNQLQEYQTHGLEQHIQDPQVRRNGCSNDISWSPPPRGTLKINVDAHLS 501

Query: 1475 SPG 1483
            S G
Sbjct: 502  SDG 504


>dbj|GAU51479.1| hypothetical protein TSUD_413680 [Trifolium subterraneum]
          Length = 2402

 Score =  171 bits (432), Expect(2) = 3e-48
 Identities = 98/225 (43%), Positives = 131/225 (58%), Gaps = 11/225 (4%)
 Frame = +1

Query: 196  IKGWKEKTSSTAGREILIKMVAQAIPTYFMGCT-----VCIL*GNG*QILVGK*EWG--- 351
            +KGWKEK  S AGR  LIK VAQAIPTY M        VC    +  + ++ K  W    
Sbjct: 1898 LKGWKEKNLSFAGRGTLIKAVAQAIPTYLMSNFLIPKGVC----HQMESMISKLWWASNV 1953

Query: 352  ---KKNTLG*LAKAVQIQI*GWNGLFRSLSDFNESLLAKQGWRFLHNPTSLIAQCLKARY 522
               K + +       Q ++ G    FR L  FNE+LLAKQGW+ L    SL+A+ +KA+Y
Sbjct: 1954 DKRKIHWVNWKTICKQKKLGGMG--FRDLRAFNEALLAKQGWKILTEQNSLMAKTMKAKY 2011

Query: 523  FPRTSFLEAKIGYSPSFTWRSIQNASWIIKKGGLWRVGNGESIKIREDNWLPMQNRFKVW 702
            FP+T FL+AK G   S+ W+ IQ ASWI+KKG  W VGNG++I I  D W+  Q+    W
Sbjct: 2012 FPQTQFLQAKKGARSSYIWQDIQQASWILKKGCCWLVGNGQNINIWNDRWINTQDSNTTW 2071

Query: 703  SPKPMGNDLTHVNQLMKEDKQSWDNTIISASFLLFEAHQILESPL 837
            SPKP+   L  V+ L+ +    W+  II+ +FL  EA+QIL+ PL
Sbjct: 2072 SPKPLNTTLEQVSDLIDQTSHQWNAQIITQNFLPIEANQILQIPL 2116



 Score = 52.0 bits (123), Expect(2) = 3e-48
 Identities = 39/152 (25%), Positives = 57/152 (37%), Gaps = 15/152 (9%)
 Frame = +3

Query: 828  VPLTDTNQPDCYM*GGEKDGMYTVRPGYIKLQEW--KAQEGKEPESSKIDTGIWKHLWSL 1001
            +PL +TN+ D     G  DG YTV  GY     W     E  +P ++     IW  LW +
Sbjct: 2114 IPLANTNEEDIVCWQGTNDGNYTVGSGYNAQMTWDTTGSEQAQPSNTLEGEQIWNKLWQI 2173

Query: 1002 CIPPNRLCSCGKFCVKLYQLEQSSETEGWL----VPYCAQDAINT---------LTQIWF 1142
              PP +L    +       ++ +   +G L     P C Q    T            +WF
Sbjct: 2174 KAPPKQLHLLWRILNNAIPVKTNLIAKGILCDSICPTCNQSLETTDHTFLQCEWARLVWF 2233

Query: 1143 ASNLGVRFQPNRIASFAQWLERNLTQGKRIQM 1238
             S L +     +  +F+ WL   LT      M
Sbjct: 2234 GSPLTITTTNAKNQNFSDWLRYMLTNSSSTSM 2265



 Score = 91.3 bits (225), Expect = 2e-15
 Identities = 53/130 (40%), Positives = 73/130 (56%), Gaps = 9/130 (6%)
 Frame = +2

Query: 56   TKHNFQGWMDMKEDPRLSKYLGLPTSVGRSKKQGFDFIKKRVWQKA*LKVGKKKHHQQLE 235
            TK   Q  + MK     SKYLG PT VGRSKKQ F+ I+ ++W+K  LK G K+ +    
Sbjct: 1853 TKSAIQQILPMKIVDHYSKYLGQPTHVGRSKKQIFNLIQDKIWKK--LK-GWKEKNLSFA 1909

Query: 236  GR---------FLSKWLLKLFLHTSWGVLCAYFEAMVNRFWWGSKNGERKIHWVSWQKLC 388
            GR          +  +L+  FL      +C   E+M+++ WW S   +RKIHWV+W+ +C
Sbjct: 1910 GRGTLIKAVAQAIPTYLMSNFLIPKG--VCHQMESMISKLWWASNVDKRKIHWVNWKTIC 1967

Query: 389  KSKYRGGMGF 418
            K K  GGMGF
Sbjct: 1968 KQKKLGGMGF 1977



 Score = 70.5 bits (171), Expect = 7e-09
 Identities = 48/144 (33%), Positives = 71/144 (49%), Gaps = 18/144 (12%)
 Frame = +2

Query: 995  ELMHPPKQAVLLWKILCKAVPVRAKLRNRGVACPLLCPRC--------HKHIDPNLVRLK 1150
            ++  PPKQ  LLW+IL  A+PV+  L  +G+ C  +CP C        H  +     RL 
Sbjct: 2172 QIKAPPKQLHLLWRILNNAIPVKTNLIAKGILCDSICPTCNQSLETTDHTFLQCEWARLV 2231

Query: 1151 LGG*VST**NCILCSMA*TKSYS---------GEKDTNEQIAAIIYSLWLARNAKCFENK 1303
              G   T    I  + A  +++S             + + I+ I YS+WLARN K F+N+
Sbjct: 2232 WFGSPLT----ITTTNAKNQNFSDWLRYMLTNSSSTSMQLISTITYSIWLARNKKVFQNQ 2287

Query: 1304 DIPAIVSVRKAFSNLVEFQ-HAVE 1372
              PA   V +A ++L E+Q H VE
Sbjct: 2288 YTPADEVVARALNSLTEYQKHLVE 2311


>gb|PNY07715.1| ribonuclease H [Trifolium pratense]
          Length = 1567

 Score =  171 bits (432), Expect(2) = 9e-48
 Identities = 99/224 (44%), Positives = 130/224 (58%), Gaps = 10/224 (4%)
 Frame = +1

Query: 196  IKGWKEKTSSTAGREILIKMVAQAIPTYFMGCTV-----CIL*GNG*QILVGK*EWG--- 351
            +KGWKEK  S AGR  LIK VAQAIPTY M   +     C    N  + +  K  WG   
Sbjct: 957  LKGWKEKNLSFAGRGTLIKAVAQAIPTYLMSSFLLPKGLC----NLLEQMSSKFWWGSNV 1012

Query: 352  --KKNTLG*LAKAVQIQI*GWNGLFRSLSDFNESLLAKQGWRFLHNPTSLIAQCLKARYF 525
              +K       K  + +  G  G FR +  FNE+LLAKQGWR L  P SL+A+ LKA+YF
Sbjct: 1013 DQRKIHWVNWRKTCKQKNQGGMG-FRDIRAFNEALLAKQGWRILTEPNSLVAKILKAKYF 1071

Query: 526  PRTSFLEAKIGYSPSFTWRSIQNASWIIKKGGLWRVGNGESIKIREDNWLPMQNRFKVWS 705
            P  +FL+A  G   S++W+SIQ ASWI+KKG  W V NG++I I ED W+  Q     W+
Sbjct: 1072 PHGNFLQATQGKKSSYSWQSIQKASWILKKGCFWLVENGQNINIWEDRWINPQGNSTTWT 1131

Query: 706  PKPMGNDLTHVNQLMKEDKQSWDNTIISASFLLFEAHQILESPL 837
            PKP+  +L  V  L+     +W+  +IS +F   EA+QIL+ PL
Sbjct: 1132 PKPINTNLEKVKDLINPTTHTWNEPVISKTFFPIEANQILQIPL 1175



 Score = 50.4 bits (119), Expect(2) = 9e-48
 Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 15/141 (10%)
 Frame = +3

Query: 828  VPLTDTNQPDCYM*GGEKDGMYTVRPGYIKLQEWKAQEGKEPESSK--IDTGIWKHLWSL 1001
            +PL++T   D     G KDG YTV+ GY    EW   E  + ++S    D   W  +W++
Sbjct: 1173 IPLSNTMTEDIISWQGTKDGNYTVKSGYNAQMEWANVESSQAQTSNNHKDEPFWNKIWNI 1232

Query: 1002 CIPPNRLCSCGKFCVKLYQLEQSSETEGWLV----PYC--AQDAINTL-------TQIWF 1142
             +PP ++    +       ++ +   +G L+    P C    + I+ L         +WF
Sbjct: 1233 KVPPKQIHLLWRIMHNAIPVKTNLIKKGILIDSLCPRCNKGPETIDHLFLHCEWAHLVWF 1292

Query: 1143 ASNLGVRFQPNRIASFAQWLE 1205
             S L ++    ++ +F +W++
Sbjct: 1293 YSPLTIKTTNIQLHTFHEWIK 1313



 Score = 97.8 bits (242), Expect = 2e-17
 Identities = 58/137 (42%), Positives = 78/137 (56%), Gaps = 9/137 (6%)
 Frame = +2

Query: 107  SKYLGLPTSVGRSKKQGFDFIKKRVWQKA*LKVGKKKHHQQLEGR---------FLSKWL 259
            SKYLG PT +GRSKKQ F FI+ +VW+K  LK G K+ +    GR          +  +L
Sbjct: 929  SKYLGQPTVIGRSKKQAFSFIQDKVWKK--LK-GWKEKNLSFAGRGTLIKAVAQAIPTYL 985

Query: 260  LKLFLHTSWGVLCAYFEAMVNRFWWGSKNGERKIHWVSWQKLCKSKYRGGMGFLEAYLTL 439
            +  FL      LC   E M ++FWWGS   +RKIHWV+W+K CK K +GGMGF +  +  
Sbjct: 986  MSSFLLPKG--LCNLLEQMSSKFWWGSNVDQRKIHWVNWRKTCKQKNQGGMGFRD--IRA 1041

Query: 440  MNPS*QNKVGDFFITQP 490
             N +   K G   +T+P
Sbjct: 1042 FNEALLAKQGWRILTEP 1058



 Score = 72.4 bits (176), Expect = 2e-09
 Identities = 53/161 (32%), Positives = 76/161 (47%), Gaps = 19/161 (11%)
 Frame = +2

Query: 1007 PPKQAVLLWKILCKAVPVRAKLRNRGVACPLLCPRCHKH---IDPNLVRLKLGG*V---- 1165
            PPKQ  LLW+I+  A+PV+  L  +G+    LCPRC+K    ID   +  +    V    
Sbjct: 1235 PPKQIHLLWRIMHNAIPVKTNLIKKGILIDSLCPRCNKGPETIDHLFLHCEWAHLVWFYS 1294

Query: 1166 -----ST**NCILCSMA*TKSYSGEKDTNEQ---IAAIIYSLWLARNAKCFENKDIPAIV 1321
                 +T  N  L +      Y     T E    +++I YS+W ARN K F+NKDIP   
Sbjct: 1295 PLTIKTT--NIQLHTFHEWIKYMLHNTTKESMQILSSITYSIWFARNKKVFQNKDIPVNE 1352

Query: 1322 SVRKAFSNLVEFQH----AVES*GGSASKRTQKSVTNWKTP 1432
            +V +A  N+ +FQH    A  +   S      +  T+W  P
Sbjct: 1353 TVDRALKNIHDFQHHLTEACFAPTNSKPPSVNRHNTSWNPP 1393


>gb|PNY16580.1| ribonuclease H, partial [Trifolium pratense]
          Length = 894

 Score =  179 bits (454), Expect(2) = 2e-47
 Identities = 98/228 (42%), Positives = 128/228 (56%), Gaps = 14/228 (6%)
 Frame = +1

Query: 196  IKGWKEKTSSTAGREILIKMVAQAIPTYFMGC----TVCIL*GNG*QILVGK*EWGKKNT 363
            IKGWKEK  S AG+E LIK VAQAIP Y M C    T C    +  + ++ K  WG    
Sbjct: 372  IKGWKEKCLSRAGKETLIKSVAQAIPNYIMSCYKLPTGCC---DNIEAMLAKFWWGTTE- 427

Query: 364  LG*LAKAVQIQI*GWNGL----------FRSLSDFNESLLAKQGWRFLHNPTSLIAQCLK 513
                 K  +I    WN L          FRS  DFN++LL KQ WR L NP SL+A+  K
Sbjct: 428  -----KQRKIHWVSWNKLGKAKSKGGLGFRSFEDFNKALLGKQCWRLLQNPDSLLAKVFK 482

Query: 514  ARYFPRTSFLEAKIGYSPSFTWRSIQNASWIIKKGGLWRVGNGESIKIREDNWLPMQNRF 693
            +RYFPR+ F++A +GY PS+ WRS+ N+  +I  G  W +GNG+ + I  D WLP Q++F
Sbjct: 483  SRYFPRSKFMDANVGYQPSYAWRSLCNSREVIDVGARWLIGNGKDVHIWNDKWLPAQDKF 542

Query: 694  KVWSPKPMGNDLTHVNQLMKEDKQSWDNTIISASFLLFEAHQILESPL 837
            KVWSP         V+ L+  + + WD  ++   F  FEA QIL  PL
Sbjct: 543  KVWSPVSNLAPNAMVSDLINLETKMWDKNLVQNCFNSFEAEQILNIPL 590



 Score = 40.8 bits (94), Expect(2) = 2e-47
 Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 13/123 (10%)
 Frame = +3

Query: 876  EKDGMYTVRPGYIKLQEWKAQEGKEPESSKIDTGIWKHLWSLCIP---PNRLCSCGKFCV 1046
            EK+G ++VR  Y  L E + Q   E  SS+ D  +WK +W + +P    N L    K  +
Sbjct: 604  EKNGEFSVRSAYHMLSEIRNQNSPEASSSR-DHLLWKAIWKVKVPNCIKNFLWRLAKAIL 662

Query: 1047 KL-YQLEQSSETEGWLVPYCAQDA---------INTLTQIWFASNLGVRFQPNRIASFAQ 1196
                +LE+   T     P C  D               Q+WF+S LG+   PN +     
Sbjct: 663  PTRSRLEKKGITLDTTCPLCFNDIECNEHLFMHCPLSKQVWFSSPLGLH-APNNV-GLIS 720

Query: 1197 WLE 1205
            W++
Sbjct: 721  WMQ 723



 Score = 85.5 bits (210), Expect = 1e-13
 Identities = 47/119 (39%), Positives = 72/119 (60%), Gaps = 6/119 (5%)
 Frame = +2

Query: 80  MDMKEDPRLSKYLGLPTSVGRSKKQGFDFIKKRVWQKA*LKVGKKKHHQQLEGRFLSKWL 259
           +D+K     SKYLGLP   GRSKK+ F  +++R+W+K  +K  K+K   +     L K +
Sbjct: 335 IDVKAVTNHSKYLGLPVIFGRSKKEIFASVQERIWKK--IKGWKEKCLSRAGKETLIKSV 392

Query: 260 LKL---FLHTSWGV---LCAYFEAMVNRFWWGSKNGERKIHWVSWQKLCKSKYRGGMGF 418
            +    ++ + + +    C   EAM+ +FWWG+   +RKIHWVSW KL K+K +GG+GF
Sbjct: 393 AQAIPNYIMSCYKLPTGCCDNIEAMLAKFWWGTTEKQRKIHWVSWNKLGKAKSKGGLGF 451


>dbj|GAU35043.1| hypothetical protein TSUD_30090 [Trifolium subterraneum]
          Length = 1599

 Score =  167 bits (422), Expect(2) = 2e-47
 Identities = 97/221 (43%), Positives = 132/221 (59%), Gaps = 7/221 (3%)
 Frame = +1

Query: 196  IKGWKEKTSSTAGREILIKMVAQAIPTYFMGCTVCIL*GNG*QI--LVGK*EWGK---KN 360
            +KGWKE   S AGR  LIK VAQAIPTY M  T  I  G   Q+  ++ +  WG    K 
Sbjct: 1026 LKGWKENYLSFAGRGTLIKAVAQAIPTYLMS-TFIIPKGLCDQMESMMSRFWWGSNVDKR 1084

Query: 361  TLG*LA--KAVQIQI*GWNGLFRSLSDFNESLLAKQGWRFLHNPTSLIAQCLKARYFPRT 534
             +  ++  K  + +  G  G FR L  FNE+LLAKQGWR +  P SL+A+ LKA+YFP+ 
Sbjct: 1085 KIHWVSWKKTCKQKKTGGMG-FRDLRAFNEALLAKQGWRIISEPNSLMARTLKAKYFPQQ 1143

Query: 535  SFLEAKIGYSPSFTWRSIQNASWIIKKGGLWRVGNGESIKIREDNWLPMQNRFKVWSPKP 714
             F +AK G  PS++W+SIQ ASWI+KKG  W +GNGE+I I ED W+  Q    +W+ KP
Sbjct: 1144 GFFQAKQGNRPSYSWQSIQKASWILKKGCFWLIGNGENINIWEDRWINPQEGNTIWTTKP 1203

Query: 715  MGNDLTHVNQLMKEDKQSWDNTIISASFLLFEAHQILESPL 837
               +L  V  L+      W+  ++  +F+  EA+QI + PL
Sbjct: 1204 DNTNLKLVRDLIDSTNHQWNAQLLDQTFIPIEANQIKQIPL 1244



 Score = 52.8 bits (125), Expect(2) = 2e-47
 Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 2/127 (1%)
 Frame = +3

Query: 828  VPLTDTNQPDCYM*GGEKDGMYTVRPGYIKLQEWKAQEGKEPESSKIDTG--IWKHLWSL 1001
            +PL+ + + D     G K+G+YTVR GY    EW+A+   +P+ S    G   W  LW +
Sbjct: 1242 IPLSSSMEEDIVGWQGTKNGIYTVRSGYNAQMEWEAKHSSQPQPSNYLEGASTWDKLWKI 1301

Query: 1002 CIPPNRLCSCGKFCVKLYQLEQSSETEGWLVPYCAQDAINTLTQIWFASNLGVRFQPNRI 1181
              PP +L    +       ++ +  T+G                +WF + + ++    + 
Sbjct: 1302 KAPPKQLHLLWRILHNAIPVKSNLLTKG------------NFMLVWFGAPITIQTTNIQS 1349

Query: 1182 ASFAQWL 1202
              F +WL
Sbjct: 1350 QKFTEWL 1356



 Score = 98.2 bits (243), Expect = 1e-17
 Identities = 58/137 (42%), Positives = 80/137 (58%), Gaps = 9/137 (6%)
 Frame = +2

Query: 107  SKYLGLPTSVGRSKKQGFDFIKKRVWQKA*LKVGKKKHHQQLEGR---------FLSKWL 259
            SKYLG PT +GRSK Q F+FI+ ++W+K  LK G K+++    GR          +  +L
Sbjct: 998  SKYLGRPTYIGRSKTQVFNFIQDKIWKK--LK-GWKENYLSFAGRGTLIKAVAQAIPTYL 1054

Query: 260  LKLFLHTSWGVLCAYFEAMVNRFWWGSKNGERKIHWVSWQKLCKSKYRGGMGFLEAYLTL 439
            +  F+      LC   E+M++RFWWGS   +RKIHWVSW+K CK K  GGMGF +  L  
Sbjct: 1055 MSTFIIPKG--LCDQMESMMSRFWWGSNVDKRKIHWVSWKKTCKQKKTGGMGFRD--LRA 1110

Query: 440  MNPS*QNKVGDFFITQP 490
             N +   K G   I++P
Sbjct: 1111 FNEALLAKQGWRIISEP 1127


>ref|XP_021838584.1| uncharacterized protein LOC110778326 [Spinacia oleracea]
          Length = 1082

 Score =  138 bits (348), Expect(3) = 3e-47
 Identities = 61/140 (43%), Positives = 91/140 (65%)
 Frame = +1

Query: 418 FRSLSDFNESLLAKQGWRFLHNPTSLIAQCLKARYFPRTSFLEAKIGYSPSFTWRSIQNA 597
           FR + DFNE++LAKQGWR + NP  L  +  KARYFP   F+ A+IG  PS+ WRSI  +
Sbjct: 571 FRRIVDFNEAMLAKQGWRIMQNPNLLETRVFKARYFPNVDFMNARIGSRPSYIWRSIWGS 630

Query: 598 SWIIKKGGLWRVGNGESIKIREDNWLPMQNRFKVWSPKPMGNDLTHVNQLMKEDKQSWDN 777
            W+I+KG  W +G+G+S+KI ED WL     F+V S  P   ++ +V+ L++++  +W  
Sbjct: 631 KWVIEKGCRWVIGDGKSVKIWEDQWLDRPPSFRVISTPPTQCNVVYVSDLIQQETNTWKE 690

Query: 778 TIISASFLLFEAHQILESPL 837
            ++  +FL FEA ++L  PL
Sbjct: 691 EVVRQNFLPFEAEEVLAIPL 710



 Score = 52.0 bits (123), Expect(3) = 3e-47
 Identities = 32/103 (31%), Positives = 38/103 (36%)
 Frame = +2

Query: 110 KYLGLPTSVGRSKKQGFDFIKKRVWQKA*LKVGKKKHHQQLEGRFLSKWLLKLFLHTSWG 289
           KYLG+PT +GRSK Q F  +K+R                                     
Sbjct: 521 KYLGMPTWIGRSKSQAFSSLKER------------------------------------- 543

Query: 290 VLCAYFEAMVNRFWWGSKNGERKIHWVSWQKLCKSKYRGGMGF 418
                          G K  ERKIHWV+W KLC  K  GG+GF
Sbjct: 544 ---------------GCKEDERKIHWVAWDKLCNLKENGGLGF 571



 Score = 49.7 bits (117), Expect(3) = 3e-47
 Identities = 43/141 (30%), Positives = 58/141 (41%), Gaps = 16/141 (11%)
 Frame = +3

Query: 828  VPLTDTNQPDCYM*GGEKDGMYTVRPGYIKLQEWKAQEGKEPESSKIDTGIWKHLWSLCI 1007
            +PL  T   D Y     K+G+Y+V+ GY  +  +K     EP SS   T +WK LW L I
Sbjct: 708  IPLCSTPLDDIYAWYYSKNGIYSVKSGYHFISYYKRVLNGEP-SSSATTELWKKLWGLQI 766

Query: 1008 PPN------RLCSCG-KFCVKLYQLEQSSETEGWLVPYCAQDAINTL---------TQIW 1139
            PP       R CS     CV L +   S ET     P C  +  NT           ++W
Sbjct: 767  PPKVRSFLWRACSKALPTCVGLNRRVTSIET---TCPRCGDNEENTFHALVKCPTAMEVW 823

Query: 1140 FASNLGVRFQPNRIASFAQWL 1202
              + L    +      F+ WL
Sbjct: 824  EEAGLEGVVEGPTCLDFSVWL 844


>gb|PNY01158.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1068

 Score =  166 bits (420), Expect(3) = 4e-47
 Identities = 96/220 (43%), Positives = 134/220 (60%), Gaps = 6/220 (2%)
 Frame = +1

Query: 196  IKGWKEKTSSTAGREILIKMVAQAIPTYFMGCTVCIL*GNG*QI--LVGK*EWG---KKN 360
            +KGWKEK  S AG+E LIK VAQAIP+Y M C   I  G+   I  ++ K  WG   +KN
Sbjct: 743  VKGWKEKCLSKAGKETLIKAVAQAIPSYIMSCYK-IPEGSCANIESMLSKFWWGSSDQKN 801

Query: 361  TLG*LAKAVQIQI*GWNGL-FRSLSDFNESLLAKQGWRFLHNPTSLIAQCLKARYFPRTS 537
             +  ++     +     GL FR  SDFN++LL KQ WR + N  SL+++  K++YFPR+ 
Sbjct: 802  KIHWMSWDRLGRAKNKGGLGFRGFSDFNKALLGKQCWRLMSNEDSLLSRVFKSKYFPRSC 861

Query: 538  FLEAKIGYSPSFTWRSIQNASWIIKKGGLWRVGNGESIKIREDNWLPMQNRFKVWSPKPM 717
            FL++K GY PS+ WRS+ NA  +I  G  W +GNG+ +KI +D WLP  + FKVWSP   
Sbjct: 862  FLKSKCGYQPSYAWRSLFNAKSVIDLGLRWTIGNGQQVKIWKDPWLPELSSFKVWSPVCN 921

Query: 718  GNDLTHVNQLMKEDKQSWDNTIISASFLLFEAHQILESPL 837
             ++   V +L+  D + W   ++  SF  FEA+QIL  PL
Sbjct: 922  LDEDAVVAELIDVDLKKWKRELVMNSFNEFEANQILNIPL 961



 Score = 37.4 bits (85), Expect(3) = 4e-47
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +2

Query: 983  ETFMELMHPPKQAVLLWKILCKAVPVRAKLRNRGVACPLLCPRCH 1117
            ++  ++  P +    LW+++ + +P R +L  +GVA   +CP CH
Sbjct: 1010 KSIWKVQAPQRVKNFLWRVVKRILPTRCRLEQKGVALDPICPLCH 1054



 Score = 36.2 bits (82), Expect(3) = 4e-47
 Identities = 21/61 (34%), Positives = 34/61 (55%)
 Frame = +3

Query: 828  VPLTDTNQPDCYM*GGEKDGMYTVRPGYIKLQEWKAQEGKEPESSKIDTGIWKHLWSLCI 1007
            +PL+     D  +   E++G Y+VR  Y  L+E   ++  EP S+  +TGIWK +W +  
Sbjct: 959  IPLSWRLPDDKKVWSWERNGNYSVRSAYHLLKEETLRDIPEP-STAGNTGIWKSIWKVQA 1017

Query: 1008 P 1010
            P
Sbjct: 1018 P 1018



 Score = 83.6 bits (205), Expect = 5e-13
 Identities = 42/110 (38%), Positives = 70/110 (63%), Gaps = 6/110 (5%)
 Frame = +2

Query: 107  SKYLGLPTSVGRSKKQGFDFIKKRVWQKA*LKVGKKKHHQQLEGRFLSKWL---LKLFLH 277
            S+YLGLP   GRSKK+ F F++ R+W+K  +K  K+K   +     L K +   +  ++ 
Sbjct: 715  SRYLGLPVIFGRSKKEVFAFVQDRIWKK--VKGWKEKCLSKAGKETLIKAVAQAIPSYIM 772

Query: 278  TSWGV---LCAYFEAMVNRFWWGSKNGERKIHWVSWQKLCKSKYRGGMGF 418
            + + +    CA  E+M+++FWWGS + + KIHW+SW +L ++K +GG+GF
Sbjct: 773  SCYKIPEGSCANIESMLSKFWWGSSDQKNKIHWMSWDRLGRAKNKGGLGF 822


>gb|PNY03092.1| ribonuclease H [Trifolium pratense]
          Length = 970

 Score =  164 bits (415), Expect(2) = 4e-47
 Identities = 100/237 (42%), Positives = 128/237 (54%), Gaps = 17/237 (7%)
 Frame = +1

Query: 178  GVAKSLIKGWKEKTSSTAGREILIKMVAQAIPTYFMGC-----TVCIL*GNG*QILVGK* 342
            G +K+ +KGWKE+  S AGR ILIK VAQAIP Y M        VC       + ++   
Sbjct: 374  GRSKNQLKGWKERNLSFAGRGILIKAVAQAIPNYIMSSFLIPKEVCAQM----EKMICNF 429

Query: 343  EWGKKNTLG*LAKAVQIQI*GWNGL----------FRSLSDFNESLLAKQGWRFLHNPTS 492
             WG          + +I    W  +          FR L  FNE+LLAKQGWR +  P+S
Sbjct: 430  WWGSTTD------SRKIHWINWQKICRQKKTGGLGFRELRAFNEALLAKQGWRIICQPSS 483

Query: 493  LIAQCLKARYFPRTSFLEAKIGYSPSFTWRSIQNASWIIKKGGLWRVGNGESIKIREDNW 672
            L+AQ LKA+YFP   FL+AK     S+TWRSI  A WIIKKG  W +G GE + I +DNW
Sbjct: 484  LMAQVLKAKYFPNDQFLQAKPKQHMSYTWRSILQARWIIKKGCYWNIGTGEEVDIWKDNW 543

Query: 673  LPMQNRFKVWSPKPMGNDLTH--VNQLMKEDKQSWDNTIISASFLLFEAHQILESPL 837
            +  +     WS KP  N  TH  V  +M     SW+ TII+  FL  EA +IL+ P+
Sbjct: 544  IHQKGNSSTWSSKP--NLTTHHKVKDIMNIHNNSWNETIINQLFLPIEAQKILQIPI 598



 Score = 54.7 bits (130), Expect(2) = 4e-47
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
 Frame = +3

Query: 828  VPLTDTNQPDCYM*GGEKDGMYTVRPGYIKLQEWKAQEGKEPESSKIDTGIWKHLWSLCI 1007
            +P+T T+QPD  +  G  DG YTV+ GY  + EW   E  +  +S  +  IW  LW L I
Sbjct: 596  IPITGTSQPDALIWAGTIDGHYTVKSGYQAITEW--SESTQASTSANNDDIWPMLWKLNI 653

Query: 1008 PPNRLCSCGKFCVKLYQLEQSSETEGW----LVPYCAQDAINTL----------TQIWFA 1145
            PP       +   +   ++ +   +G     L P C  + + T+           Q+WF+
Sbjct: 654  PPKHSHLLWRALNEAIPVKGNLFKKGVKCDPLCPRCF-NHVETIHHAFLDCVWAKQMWFS 712

Query: 1146 SNLGVRFQPNRIASFAQWL 1202
            SNL +     +  +   W+
Sbjct: 713  SNLTINLNHCQHTNLHDWV 731



 Score = 82.8 bits (203), Expect = 8e-13
 Identities = 47/128 (36%), Positives = 67/128 (52%)
 Frame = +2

Query: 107 SKYLGLPTSVGRSKKQGFDFIKKRVWQKA*LKVGKKKHHQQLEGRFLSKWLLKLFLHTSW 286
           SKYLG+PT +GRSK Q       + W++  L    +    +   + +  +++  FL    
Sbjct: 364 SKYLGMPTFIGRSKNQ------LKGWKERNLSFAGRGILIKAVAQAIPNYIMSSFLIPK- 416

Query: 287 GVLCAYFEAMVNRFWWGSKNGERKIHWVSWQKLCKSKYRGGMGFLEAYLTLMNPS*QNKV 466
             +CA  E M+  FWWGS    RKIHW++WQK+C+ K  GG+GF E  L   N +   K 
Sbjct: 417 -EVCAQMEKMICNFWWGSTTDSRKIHWINWQKICRQKKTGGLGFRE--LRAFNEALLAKQ 473

Query: 467 GDFFITQP 490
           G   I QP
Sbjct: 474 GWRIICQP 481


>gb|PNX96384.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1376

 Score =  164 bits (414), Expect(2) = 7e-47
 Identities = 96/221 (43%), Positives = 128/221 (57%), Gaps = 6/221 (2%)
 Frame = +1

Query: 196  IKGWKEKTSSTAGREILIKMVAQAIPTYFMGCTVCIL*GNG*QI--LVGK*EWGKKNTLG 369
            +KGWKEK  S AGR  LIK VAQAIPTY M C + I  G   Q+  ++    WG      
Sbjct: 783  LKGWKEKNLSFAGRSTLIKAVAQAIPTYLMSCFL-IPKGICDQLEKMICNFWWGSTTDHR 841

Query: 370  *L--AKAVQIQI*GWNGL--FRSLSDFNESLLAKQGWRFLHNPTSLIAQCLKARYFPRTS 537
             +   K   I     NG   FR L  FNE+LLAKQ WR + NPTSL+AQ LKA+Y+P+  
Sbjct: 842  KMHWVKWSNICTQKNNGGLGFRDLRAFNEALLAKQSWRLITNPTSLVAQVLKAKYYPKED 901

Query: 538  FLEAKIGYSPSFTWRSIQNASWIIKKGGLWRVGNGESIKIREDNWLPMQNRFKVWSPKPM 717
             L AK   + S+TWRSI   +WIIK+G  W +G+G++  I EDNW+   +     +PKP 
Sbjct: 902  LLHAKYSKNMSYTWRSIIQTNWIIKRGSYWTIGSGQNTNIWEDNWIQQASSTYKCNPKPN 961

Query: 718  GNDLTHVNQLMKEDKQSWDNTIISASFLLFEAHQILESPLL 840
              +LT V +LM  +  +W   II+  F  +EA  IL+ P++
Sbjct: 962  NLNLTKVQELMDTNNNAWKEDIINQIFQPYEAQMILKIPIM 1002



 Score = 54.3 bits (129), Expect(2) = 7e-47
 Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 13/138 (9%)
 Frame = +3

Query: 828  VPLTDTNQPDCYM*GGEKDGMYTVRPGYIKLQEWKAQEGKEPESSKIDTGIWKHLWSLCI 1007
            +P+ D  QPD       +DG+Y+V+ GY  + EW         ++  D  +WK +W L +
Sbjct: 999  IPIMDKAQPDTLTWDNTQDGIYSVKSGYHSIMEWSHTLNATTSNNSQD--LWKAIWKLNV 1056

Query: 1008 PPNRLCSCGKFCVKLYQLEQSSETEGW----LVPYCAQDAINT---------LTQIWFAS 1148
            PP       +       ++ +    G     L P C      T           Q+WFAS
Sbjct: 1057 PPKHTHLLWRVLKNALPVKNNLFKRGVRCDPLCPRCTNCLETTNHVFLDCEWTKQVWFAS 1116

Query: 1149 NLGVRFQPNRIASFAQWL 1202
            +L +    N+I     W+
Sbjct: 1117 SLNLNLGQNQITDVYDWI 1134



 Score = 95.5 bits (236), Expect = 8e-17
 Identities = 53/134 (39%), Positives = 71/134 (52%), Gaps = 9/134 (6%)
 Frame = +2

Query: 44   ITMETKHNFQGWMDMKEDPRLSKYLGLPTSVGRSKKQGFDFIKKRVWQKA*LKVGKKKHH 223
            +T ETK +    + MK     SKYLG+P   GRSKKQ F+ IK+++WQK  LK G K+ +
Sbjct: 734  VTTETKKDVTTILPMKTPEHFSKYLGMPIVYGRSKKQIFNHIKEKIWQK--LK-GWKEKN 790

Query: 224  QQLEGRF---------LSKWLLKLFLHTSWGVLCAYFEAMVNRFWWGSKNGERKIHWVSW 376
                GR          +  +L+  FL      +C   E M+  FWWGS    RK+HWV W
Sbjct: 791  LSFAGRSTLIKAVAQAIPTYLMSCFLIPKG--ICDQLEKMICNFWWGSTTDHRKMHWVKW 848

Query: 377  QKLCKSKYRGGMGF 418
              +C  K  GG+GF
Sbjct: 849  SNICTQKNNGGLGF 862



 Score = 62.8 bits (151), Expect = 2e-06
 Identities = 59/179 (32%), Positives = 75/179 (41%), Gaps = 20/179 (11%)
 Frame = +2

Query: 1007 PPKQAVLLWKILCKAVPVRAKLRNRGVACPLLCPRC--------HKHIDPNLVRLKLGG* 1162
            PPK   LLW++L  A+PV+  L  RGV C  LCPRC        H  +D    +      
Sbjct: 1057 PPKHTHLLWRVLKNALPVKNNLFKRGVRCDPLCPRCTNCLETTNHVFLDCEWTKQVW--- 1113

Query: 1163 VST**NCILCSMA*TKSY--------SGEKDTNEQIAAIIYSLWLARNAKCFENKDIPAI 1318
             ++  N  L     T  Y        +  K+  EQI AIIY +W ARN   F+ K +P  
Sbjct: 1114 FASSLNLNLGQNQITDVYDWIRYMINNTNKECIEQITAIIYGIWYARNMLVFQEKLLPPQ 1173

Query: 1319 VSVRKAFSNLVEFQ-HAVES*GGSASKRTQKSVTN---WKTPNSGKVVAAAAATWSSPG 1483
                 A   L E+Q H  E        RT KS +N   W  P  G +     A  SS G
Sbjct: 1174 EISSIATKQLQEYQLHGFEQEIHEPQVRT-KSCSNDISWSPPLRGTLKINVDAHLSSDG 1231


>ref|XP_015941761.1| uncharacterized protein LOC107467237 [Arachis duranensis]
          Length = 238

 Score =  147 bits (372), Expect(2) = 2e-46
 Identities = 66/140 (47%), Positives = 97/140 (69%)
 Frame = +1

Query: 418 FRSLSDFNESLLAKQGWRFLHNPTSLIAQCLKARYFPRTSFLEAKIGYSPSFTWRSIQNA 597
           FRS   FN++LLAKQGWR + NP SL  + LKA+Y+ R  F ++  GY+PS+TWR+I   
Sbjct: 51  FRSFEAFNQALLAKQGWRLIKNPESLTTRMLKAKYYARKKFTDSDRGYNPSYTWRNIWET 110

Query: 598 SWIIKKGGLWRVGNGESIKIREDNWLPMQNRFKVWSPKPMGNDLTHVNQLMKEDKQSWDN 777
            W+++ GGLW++ +G++ KI  D WLP QN FK+WS +   +  T V+ L+ ++ ++W+ 
Sbjct: 111 KWVLELGGLWKISSGKNTKIWGDPWLPNQNGFKLWSTRTGFDKETTVDSLINQEDRTWNQ 170

Query: 778 TIISASFLLFEAHQILESPL 837
            II+ +FL FEA QILE PL
Sbjct: 171 EIINNTFLPFEAEQILELPL 190



 Score = 69.3 bits (168), Expect(2) = 2e-46
 Identities = 26/42 (61%), Positives = 34/42 (80%)
 Frame = +2

Query: 293 LCAYFEAMVNRFWWGSKNGERKIHWVSWQKLCKSKYRGGMGF 418
           LC   E +++ F+WGSK GERKIHWV+W+K+CKSK  GG+GF
Sbjct: 10  LCCRIERIISNFYWGSKEGERKIHWVAWEKMCKSKEDGGLGF 51


>gb|ABN07997.1| contains similarity to reverse trancriptase, related [Medicago
           truncatula]
          Length = 407

 Score =  160 bits (406), Expect(2) = 1e-45
 Identities = 93/229 (40%), Positives = 126/229 (55%), Gaps = 11/229 (4%)
 Frame = +1

Query: 199 KGWKEKTSSTAGREILIKMVAQAIPTYFMGCTVCIL*GNG*QILVGK*E-------WG-- 351
           KGWK+K  S  GR +LIK VAQAIPTY+M C +        + L  K E       WG  
Sbjct: 57  KGWKKKCLSFEGRGVLIKAVAQAIPTYYMSCFMLP------KGLCTKIEKAICSFWWGTT 110

Query: 352 -KKNTLG*LAKAVQIQI*GWNGL-FRSLSDFNESLLAKQGWRFLHNPTSLIAQCLKARYF 525
            K   +  ++K    +     GL F++L DFN ++LAK+  RF  NP SLIA+C KA Y+
Sbjct: 111 DKNKKMHWVSKKKLFRSKHSGGLGFKTLRDFNLAMLAKKVRRFYTNPNSLIAKCFKANYY 170

Query: 526 PRTSFLEAKIGYSPSFTWRSIQNASWIIKKGGLWRVGNGESIKIREDNWLPMQNRFKVWS 705
           P T  L+AK+G  PS+ W+SIQNA W+I KG  WR+G+G SI I EDNW+P     KV +
Sbjct: 171 PHTDILQAKVGNYPSYAWKSIQNAIWVISKGSCWRIGDGGSINIWEDNWVPTYKGLKVMT 230

Query: 706 PKPMGNDLTHVNQLMKEDKQSWDNTIISASFLLFEAHQILESPLLIQIN 852
            K   + +  V  L+   +  W+  I+   F+     QI   PL+   N
Sbjct: 231 TKGPNHFVNRVKDLINNQESLWNKVILEDQFISINIDQISHIPLVNTTN 279



 Score = 53.5 bits (127), Expect(2) = 1e-45
 Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 13/126 (10%)
 Frame = +3

Query: 828  VPLTDTNQPDCYM*GGEKDGMYTVRPGYIKLQEWKAQEGKEPESSKIDTGIWKHLWSLCI 1007
            +PL +T  PD  M      G+Y+V+ GY  L+ W+ Q+     +S  +T IWK +WSL  
Sbjct: 272  IPLVNTTNPDSLMWMHNPTGIYSVKSGYNTLRTWQTQQINNTSTSSDETLIWKKIWSLHT 331

Query: 1008 PPNRLCSCGKFCVKLYQLEQSSETEG-WLVPYCAQDAINTLT------------QIWFAS 1148
             P       +       +  S    G    P C +    T T            ++WF S
Sbjct: 332  IPRHKVLLWRILNDSLPVRSSLRKRGIQCYPLCPRCHSKTETITHLFMSCPLSKRVWFGS 391

Query: 1149 NLGVRF 1166
            NL + F
Sbjct: 392  NLCINF 397



 Score = 87.8 bits (216), Expect = 6e-15
 Identities = 49/134 (36%), Positives = 71/134 (52%), Gaps = 9/134 (6%)
 Frame = +2

Query: 44  ITMETKHNFQGWMDMKEDPRLSKYLGLPTSVGRSKKQGFDFIKKRVWQKA*LKVGKKKHH 223
           I+ E K   Q  + +K    + KYLG+PT  GRSK+Q F FI +R+W+K     G KK  
Sbjct: 7   ISQEFKEEIQKHLHVKISDGIQKYLGMPTQFGRSKEQDFHFIMERIWKK---HKGWKKKC 63

Query: 224 QQLEGR---------FLSKWLLKLFLHTSWGVLCAYFEAMVNRFWWGSKNGERKIHWVSW 376
              EGR          +  + +  F+      LC   E  +  FWWG+ +  +K+HWVS 
Sbjct: 64  LSFEGRGVLIKAVAQAIPTYYMSCFMLPKG--LCTKIEKAICSFWWGTTDKNKKMHWVSK 121

Query: 377 QKLCKSKYRGGMGF 418
           +KL +SK+ GG+GF
Sbjct: 122 KKLFRSKHSGGLGF 135


>gb|PNY02482.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1070

 Score =  154 bits (389), Expect(2) = 1e-44
 Identities = 91/225 (40%), Positives = 126/225 (56%), Gaps = 10/225 (4%)
 Frame = +1

Query: 196  IKGWKEKTSSTAGREILIKMVAQAIPTYFMGCT-----VCIL*GNG*QILVGK*EWGKKN 360
            +KGWKEK  S AGR  LIK VAQAIPTY M        VC    +  + ++    WG   
Sbjct: 573  LKGWKEKHLSFAGRGTLIKAVAQAIPTYLMSSFLLPKGVC----DQLEKMICNFWWGSST 628

Query: 361  TLG*L-----AKAVQIQI*GWNGLFRSLSDFNESLLAKQGWRFLHNPTSLIAQCLKARYF 525
                +     +   + ++ G  G FR L  FNE+LLAKQGWR +  P SL+A+ LKA+Y+
Sbjct: 629  DHRKIHWIKWSTVCKHKMEGGIG-FRDLRAFNEALLAKQGWRLITQPDSLVAKILKAKYY 687

Query: 526  PRTSFLEAKIGYSPSFTWRSIQNASWIIKKGGLWRVGNGESIKIREDNWLPMQNRFKVWS 705
            P+  FL+A      S+TW+SI  ASW+IK+G  W +G+G+ I I EDNW+  +       
Sbjct: 688  PKGEFLKASHKQQMSYTWKSILQASWVIKRGSYWTIGSGQGINIWEDNWIQQKGNPTSTI 747

Query: 706  PKPMGNDLTHVNQLMKEDKQSWDNTIISASFLLFEAHQILESPLL 840
             KP    L  V +LM ++   W+ TII+  F  +EAH I + P+L
Sbjct: 748  SKPNNCGLIKVKELMDDNYNDWNVTIINQIFNPYEAHMIQQIPIL 792



 Score = 56.6 bits (135), Expect(2) = 1e-44
 Identities = 38/139 (27%), Positives = 55/139 (39%), Gaps = 15/139 (10%)
 Frame = +3

Query: 828  VPLTDTNQPDCYM*GGEKDGMYTVRPGYIKLQEW-KAQEGKEPESSKIDTGIWKHLWSLC 1004
            +P+ D  Q D     G +DG Y+V+ GY  + EW K  +     SS     IWK LW L 
Sbjct: 789  IPILDKTQSDILTWDGTRDGHYSVKSGYQAIMEWAKNSDNNNATSSNSSMEIWKVLWKLN 848

Query: 1005 IPPNR-----LCSCGKFCVKLYQLEQSSETEGWLVPYCAQDA---------INTLTQIWF 1142
            +PP        C      VK    ++    +  L P C              +   ++WF
Sbjct: 849  VPPKHSHFIWRCLSNAIPVKGKLFKKGIRCDP-LCPRCLNHVETIQHVFLECDWAKKVWF 907

Query: 1143 ASNLGVRFQPNRIASFAQW 1199
            AS L +    N++  F  W
Sbjct: 908  ASPLTLNLNSNQLTEFYDW 926



 Score = 98.6 bits (244), Expect = 7e-18
 Identities = 58/158 (36%), Positives = 85/158 (53%), Gaps = 9/158 (5%)
 Frame = +2

Query: 44  ITMETKHNFQGWMDMKEDPRLSKYLGLPTSVGRSKKQGFDFIKKRVWQKA*LKVGKKKHH 223
           ++ + + +    + MK   + SKYLG+P ++GRSKKQ F+FI++++W+K  LK G K+ H
Sbjct: 524 VSNQIQRDISNILPMKILNQFSKYLGMPVALGRSKKQIFNFIQEKIWKK--LK-GWKEKH 580

Query: 224 QQLEGR---------FLSKWLLKLFLHTSWGVLCAYFEAMVNRFWWGSKNGERKIHWVSW 376
               GR          +  +L+  FL      +C   E M+  FWWGS    RKIHW+ W
Sbjct: 581 LSFAGRGTLIKAVAQAIPTYLMSSFLLPKG--VCDQLEKMICNFWWGSSTDHRKIHWIKW 638

Query: 377 QKLCKSKYRGGMGFLEAYLTLMNPS*QNKVGDFFITQP 490
             +CK K  GG+GF +  L   N +   K G   ITQP
Sbjct: 639 STVCKHKMEGGIGFRD--LRAFNEALLAKQGWRLITQP 674



 Score = 68.6 bits (166), Expect = 2e-08
 Identities = 53/174 (30%), Positives = 80/174 (45%), Gaps = 15/174 (8%)
 Frame = +2

Query: 1007 PPKQAVLLWKILCKAVPVRAKLRNRGVACPLLCPRCHKHIDP-NLVRLKLGG*----VST 1171
            PPK +  +W+ L  A+PV+ KL  +G+ C  LCPRC  H++    V L+         ++
Sbjct: 850  PPKHSHFIWRCLSNAIPVKGKLFKKGIRCDPLCPRCLNHVETIQHVFLECDWAKKVWFAS 909

Query: 1172 **NCILCSMA*TKSY--------SGEKDTNEQIAAIIYSLWLARNAKCFENKDIPAIVSV 1327
                 L S   T+ Y        + +K+  E+I AI Y +W  RN   F+NKD+P     
Sbjct: 910  PLTLNLNSNQLTEFYDWFNYMIINTDKECMEKIVAITYEIWNTRNLLVFQNKDLPPQEIS 969

Query: 1328 RKAFSNLVEFQHAVES*G--GSASKRTQKSVTNWKTPNSGKVVAAAAATWSSPG 1483
              A   L EF+   E        S ++ ++ T+W  P  G + A   A  SS G
Sbjct: 970  ANALKRLHEFKSFEEQRTPIQKPSHKSCRNNTSWSPPLRGCLKANVDAHLSSDG 1023


>gb|PNX98065.1| ribonuclease H [Trifolium pratense]
          Length = 1011

 Score =  154 bits (389), Expect(2) = 1e-44
 Identities = 91/225 (40%), Positives = 126/225 (56%), Gaps = 10/225 (4%)
 Frame = +1

Query: 196  IKGWKEKTSSTAGREILIKMVAQAIPTYFMGCT-----VCIL*GNG*QILVGK*EWGKKN 360
            +KGWKEK  S AGR  LIK VAQAIPTY M        VC    +  + ++    WG   
Sbjct: 419  LKGWKEKHLSFAGRGTLIKAVAQAIPTYLMSSFLLPKGVC----DQLEKMICNFWWGSST 474

Query: 361  TLG*L-----AKAVQIQI*GWNGLFRSLSDFNESLLAKQGWRFLHNPTSLIAQCLKARYF 525
                +     +   + ++ G  G FR L  FNE+LLAKQGWR +  P SL+A+ LKA+Y+
Sbjct: 475  DHRKIHWIKWSTVCKHKMEGGIG-FRDLRAFNEALLAKQGWRLITQPDSLVAKILKAKYY 533

Query: 526  PRTSFLEAKIGYSPSFTWRSIQNASWIIKKGGLWRVGNGESIKIREDNWLPMQNRFKVWS 705
            P+  FL+A      S+TW+SI  ASW+IK+G  W +G+G+ I I EDNW+  +       
Sbjct: 534  PKGEFLKASHKQQMSYTWKSILQASWVIKRGSYWTIGSGQGINIWEDNWIQQKGNPTSTI 593

Query: 706  PKPMGNDLTHVNQLMKEDKQSWDNTIISASFLLFEAHQILESPLL 840
             KP    L  V +LM ++   W+ TII+  F  +EAH I + P+L
Sbjct: 594  SKPNNCGLIKVKELMDDNYNDWNVTIINQIFNPYEAHMIQQIPIL 638



 Score = 56.6 bits (135), Expect(2) = 1e-44
 Identities = 38/139 (27%), Positives = 55/139 (39%), Gaps = 15/139 (10%)
 Frame = +3

Query: 828  VPLTDTNQPDCYM*GGEKDGMYTVRPGYIKLQEW-KAQEGKEPESSKIDTGIWKHLWSLC 1004
            +P+ D  Q D     G +DG Y+V+ GY  + EW K  +     SS     IWK LW L 
Sbjct: 635  IPILDKTQSDILTWDGTRDGHYSVKSGYQAIMEWAKNSDNNNATSSNSSMEIWKVLWKLN 694

Query: 1005 IPPNR-----LCSCGKFCVKLYQLEQSSETEGWLVPYCAQDA---------INTLTQIWF 1142
            +PP        C      VK    ++    +  L P C              +   ++WF
Sbjct: 695  VPPKHSHFIWRCLSNAIPVKGKLFKKGIRCDP-LCPRCLNHVETIQHVFLECDWAKKVWF 753

Query: 1143 ASNLGVRFQPNRIASFAQW 1199
            AS L +    N++  F  W
Sbjct: 754  ASPLTLNLNSNQLTEFYDW 772



 Score = 98.6 bits (244), Expect = 7e-18
 Identities = 58/158 (36%), Positives = 85/158 (53%), Gaps = 9/158 (5%)
 Frame = +2

Query: 44  ITMETKHNFQGWMDMKEDPRLSKYLGLPTSVGRSKKQGFDFIKKRVWQKA*LKVGKKKHH 223
           ++ + + +    + MK   + SKYLG+P ++GRSKKQ F+FI++++W+K  LK G K+ H
Sbjct: 370 VSNQIQRDISNILPMKILNQFSKYLGMPVALGRSKKQIFNFIQEKIWKK--LK-GWKEKH 426

Query: 224 QQLEGR---------FLSKWLLKLFLHTSWGVLCAYFEAMVNRFWWGSKNGERKIHWVSW 376
               GR          +  +L+  FL      +C   E M+  FWWGS    RKIHW+ W
Sbjct: 427 LSFAGRGTLIKAVAQAIPTYLMSSFLLPKG--VCDQLEKMICNFWWGSSTDHRKIHWIKW 484

Query: 377 QKLCKSKYRGGMGFLEAYLTLMNPS*QNKVGDFFITQP 490
             +CK K  GG+GF +  L   N +   K G   ITQP
Sbjct: 485 STVCKHKMEGGIGFRD--LRAFNEALLAKQGWRLITQP 520



 Score = 68.6 bits (166), Expect = 2e-08
 Identities = 53/174 (30%), Positives = 80/174 (45%), Gaps = 15/174 (8%)
 Frame = +2

Query: 1007 PPKQAVLLWKILCKAVPVRAKLRNRGVACPLLCPRCHKHIDP-NLVRLKLGG*----VST 1171
            PPK +  +W+ L  A+PV+ KL  +G+ C  LCPRC  H++    V L+         ++
Sbjct: 696  PPKHSHFIWRCLSNAIPVKGKLFKKGIRCDPLCPRCLNHVETIQHVFLECDWAKKVWFAS 755

Query: 1172 **NCILCSMA*TKSY--------SGEKDTNEQIAAIIYSLWLARNAKCFENKDIPAIVSV 1327
                 L S   T+ Y        + +K+  E+I AI Y +W  RN   F+NKD+P     
Sbjct: 756  PLTLNLNSNQLTEFYDWFNYMIINTDKECMEKIVAITYEIWNTRNLLVFQNKDLPPQEIS 815

Query: 1328 RKAFSNLVEFQHAVES*G--GSASKRTQKSVTNWKTPNSGKVVAAAAATWSSPG 1483
              A   L EF+   E        S ++ ++ T+W  P  G + A   A  SS G
Sbjct: 816  ANALKRLHEFKSFEEQRTPIQKPSHKSCRNNTSWSPPLRGCLKANVDAHLSSDG 869


>gb|PNY02790.1| ribonuclease H, partial [Trifolium pratense]
          Length = 916

 Score =  154 bits (389), Expect(2) = 1e-44
 Identities = 91/225 (40%), Positives = 126/225 (56%), Gaps = 10/225 (4%)
 Frame = +1

Query: 196  IKGWKEKTSSTAGREILIKMVAQAIPTYFMGCT-----VCIL*GNG*QILVGK*EWGKKN 360
            +KGWKEK  S AGR  LIK VAQAIPTY M        VC    +  + ++    WG   
Sbjct: 419  LKGWKEKHLSFAGRGTLIKAVAQAIPTYLMSSFLLPKGVC----DQLEKMICNFWWGSST 474

Query: 361  TLG*L-----AKAVQIQI*GWNGLFRSLSDFNESLLAKQGWRFLHNPTSLIAQCLKARYF 525
                +     +   + ++ G  G FR L  FNE+LLAKQGWR +  P SL+A+ LKA+Y+
Sbjct: 475  DHRKIHWIKWSTVCKHKMEGGIG-FRDLRAFNEALLAKQGWRLITQPDSLVAKILKAKYY 533

Query: 526  PRTSFLEAKIGYSPSFTWRSIQNASWIIKKGGLWRVGNGESIKIREDNWLPMQNRFKVWS 705
            P+  FL+A      S+TW+SI  ASW+IK+G  W +G+G+ I I EDNW+  +       
Sbjct: 534  PKGEFLKASHKQQMSYTWKSILQASWVIKRGSYWTIGSGQGINIWEDNWIQQKGNPTSTI 593

Query: 706  PKPMGNDLTHVNQLMKEDKQSWDNTIISASFLLFEAHQILESPLL 840
             KP    L  V +LM ++   W+ TII+  F  +EAH I + P+L
Sbjct: 594  SKPNNCGLIKVKELMDDNYNDWNVTIINQIFNPYEAHMIQQIPIL 638



 Score = 56.6 bits (135), Expect(2) = 1e-44
 Identities = 38/139 (27%), Positives = 55/139 (39%), Gaps = 15/139 (10%)
 Frame = +3

Query: 828  VPLTDTNQPDCYM*GGEKDGMYTVRPGYIKLQEW-KAQEGKEPESSKIDTGIWKHLWSLC 1004
            +P+ D  Q D     G +DG Y+V+ GY  + EW K  +     SS     IWK LW L 
Sbjct: 635  IPILDKTQSDILTWDGTRDGHYSVKSGYQAIMEWAKNSDNNNATSSNSSMEIWKVLWKLN 694

Query: 1005 IPPNR-----LCSCGKFCVKLYQLEQSSETEGWLVPYCAQDA---------INTLTQIWF 1142
            +PP        C      VK    ++    +  L P C              +   ++WF
Sbjct: 695  VPPKHSHFIWRCLSNAIPVKGKLFKKGIRCDP-LCPRCLNHVETIQHVFLECDWAKKVWF 753

Query: 1143 ASNLGVRFQPNRIASFAQW 1199
            AS L +    N++  F  W
Sbjct: 754  ASPLTLNLNSNQLTEFYDW 772



 Score = 98.6 bits (244), Expect = 7e-18
 Identities = 58/158 (36%), Positives = 85/158 (53%), Gaps = 9/158 (5%)
 Frame = +2

Query: 44  ITMETKHNFQGWMDMKEDPRLSKYLGLPTSVGRSKKQGFDFIKKRVWQKA*LKVGKKKHH 223
           ++ + + +    + MK   + SKYLG+P ++GRSKKQ F+FI++++W+K  LK G K+ H
Sbjct: 370 VSNQIQRDISNILPMKILNQFSKYLGMPVALGRSKKQIFNFIQEKIWKK--LK-GWKEKH 426

Query: 224 QQLEGR---------FLSKWLLKLFLHTSWGVLCAYFEAMVNRFWWGSKNGERKIHWVSW 376
               GR          +  +L+  FL      +C   E M+  FWWGS    RKIHW+ W
Sbjct: 427 LSFAGRGTLIKAVAQAIPTYLMSSFLLPKG--VCDQLEKMICNFWWGSSTDHRKIHWIKW 484

Query: 377 QKLCKSKYRGGMGFLEAYLTLMNPS*QNKVGDFFITQP 490
             +CK K  GG+GF +  L   N +   K G   ITQP
Sbjct: 485 STVCKHKMEGGIGFRD--LRAFNEALLAKQGWRLITQP 520



 Score = 68.6 bits (166), Expect = 2e-08
 Identities = 53/174 (30%), Positives = 80/174 (45%), Gaps = 15/174 (8%)
 Frame = +2

Query: 1007 PPKQAVLLWKILCKAVPVRAKLRNRGVACPLLCPRCHKHIDP-NLVRLKLGG*----VST 1171
            PPK +  +W+ L  A+PV+ KL  +G+ C  LCPRC  H++    V L+         ++
Sbjct: 696  PPKHSHFIWRCLSNAIPVKGKLFKKGIRCDPLCPRCLNHVETIQHVFLECDWAKKVWFAS 755

Query: 1172 **NCILCSMA*TKSY--------SGEKDTNEQIAAIIYSLWLARNAKCFENKDIPAIVSV 1327
                 L S   T+ Y        + +K+  E+I AI Y +W  RN   F+NKD+P     
Sbjct: 756  PLTLNLNSNQLTEFYDWFNYMIINTDKECMEKIVAITYEIWNTRNLLVFQNKDLPPQEIS 815

Query: 1328 RKAFSNLVEFQHAVES*G--GSASKRTQKSVTNWKTPNSGKVVAAAAATWSSPG 1483
              A   L EF+   E        S ++ ++ T+W  P  G + A   A  SS G
Sbjct: 816  ANALKRLHEFKSFEEQRTPIQKPSHKSCRNNTSWSPPLRGCLKANVDAHLSSDG 869