BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus22_contig00006147
         (1746 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX99741.1| retrotransposon-related protein, partial [Trifoli...   552   0.0  
dbj|GAU18876.1| hypothetical protein TSUD_228660 [Trifolium subt...   548   e-176
gb|PNX94328.1| Ty3/gypsy retrotransposon protein, partial [Trifo...   545   e-176
dbj|GAU35886.1| hypothetical protein TSUD_383780 [Trifolium subt...   534   e-172
dbj|GAU15122.1| hypothetical protein TSUD_08600 [Trifolium subte...   534   e-172
gb|PNY17392.1| Ty3/gypsy retrotransposon protein [Trifolium prat...   535   e-171
gb|PNX72195.1| retrotransposon-related protein, partial [Trifoli...   513   e-169
dbj|GAU31589.1| hypothetical protein TSUD_54120 [Trifolium subte...   483   e-154
dbj|GAU45976.1| hypothetical protein TSUD_401160 [Trifolium subt...   484   e-154
dbj|GAU30089.1| hypothetical protein TSUD_392450 [Trifolium subt...   494   e-154
dbj|GAU36702.1| hypothetical protein TSUD_16140 [Trifolium subte...   464   e-146
gb|PNX76318.1| retrotransposon-related protein, partial [Trifoli...   435   e-140
gb|KYP49547.1| Retrotransposable element Tf2 [Cajanus cajan]          433   e-137
dbj|GAU35511.1| hypothetical protein TSUD_155420 [Trifolium subt...   420   e-135
ref|XP_014491240.1| uncharacterized protein LOC106753853 [Vigna ...   406   e-131
ref|XP_014511566.1| uncharacterized protein LOC106770264 [Vigna ...   413   e-129
gb|KYP68937.1| Retrotransposon-derived protein PEG10 [Cajanus ca...   390   e-126
dbj|GAU49705.1| hypothetical protein TSUD_182030 [Trifolium subt...   413   e-126
gb|PNX92970.1| Ty3/gypsy retrotransposon protein, partial [Trifo...   412   e-125
gb|PNX92353.1| Ty3/gypsy retrotransposon protein [Trifolium prat...   410   e-124

>gb|PNX99741.1| retrotransposon-related protein, partial [Trifolium pratense]
          Length = 801

 Score =  552 bits (1422), Expect = 0.0
 Identities = 293/518 (56%), Positives = 353/518 (68%)
 Frame = -2

Query: 1556 LSTEMTQLRTRLPPPGFGPFSAEQRLTHPLSSTSIKLDIPRFNGTDALGWIFKINQFFDF 1377
            ++ E   LR+RLPPPGFGP       T P  +TSIKLDIPRF+GTD LGWIFKINQFFD+
Sbjct: 28   VADEFQGLRSRLPPPGFGP--PVTMTTAP--ATSIKLDIPRFDGTDPLGWIFKINQFFDY 83

Query: 1376 HLTPEDQRLRIASFYMEGEALGWFQWMHSNGQLLSWHQFIHALEVRFAPSQYEDPQGALF 1197
            HLTP++QRLRIASFYM+G+AL WFQWMHSNGQ+L+W  F+HALE RFAPSQYEDP+GALF
Sbjct: 84   HLTPDEQRLRIASFYMDGDALPWFQWMHSNGQILTWASFLHALETRFAPSQYEDPKGALF 143

Query: 1196 KLCQTTTVADYQASFEALANRIVGLQPQFYLSCFVSGLKPSIRREVLAFQPTTLTQAINL 1017
            KL QT +V +YQ  FE+LANR+ GL P FYLSCFVSGLKP+IRREV AFQP TLTQAINL
Sbjct: 144  KLNQTGSVKEYQGQFESLANRVTGLPPPFYLSCFVSGLKPAIRREVQAFQPLTLTQAINL 203

Query: 1016 AKLQEDKIRDRSSSFXXXXXXXXXXXXXXXXXXXXXXXXXXALXXXXXXXXXXXXXPKPV 837
            AKLQE+K+ DRSSS                           +              PKP 
Sbjct: 204  AKLQEEKLADRSSS----------NLSVTKPQPTTNTYPSSSSFRPTLSVSPFKNPPKP- 252

Query: 836  TPIKRLTPT*LQARRDKGLCYNCDELYYNGHRCRRQFHLLITEXXXXXXXXXXXXXIXXX 657
             PIKRLTP  LQARR+KGLCYNCDE Y  GHRC+R FHLLI E                 
Sbjct: 253  PPIKRLTPAELQARREKGLCYNCDEKYIQGHRCKRSFHLLIVEPEDVESDASTLQLQSES 312

Query: 656  XXXXXXXXXTNDSQPAQISLHALMGHAIPQTLRVLGYIGKQPVSILIDSGSTHNFIQDRI 477
                       D  PAQISLHALMGH+IPQTLRVLG I +  V ILIDSGSTHNF+QDR+
Sbjct: 313  NTQVEISDPEPD--PAQISLHALMGHSIPQTLRVLGQIHQNQVGILIDSGSTHNFLQDRV 370

Query: 476  IKQLNIQCKPTENFEVLVGNGEELHCSKMCHQLHLNIGSHDFSVDFYVLPISGAELVLGI 297
            +KQL +  +P  +F VLVGNGE L C+ MC ++ L +GSH+F VD +VLP+SGAELVLG+
Sbjct: 371  VKQLGLLTQPAHSFTVLVGNGEHLSCTTMCSKVPLMLGSHEFIVDLFVLPLSGAELVLGV 430

Query: 296  QWLRTLGPILTDYDNLTMEFTVNGQLVHLHGNTKPPPLEASLHQLQRMMHTHSVDTVIQF 117
            QWL+TLGPI+TDY+ LTM F  +G+ + L G  KP P E++L+QLQR++HT+++DT +  
Sbjct: 431  QWLKTLGPIVTDYEKLTMSFHKDGEQIQLAGIPKPSPQESNLNQLQRLIHTNAIDTFLHL 490

Query: 116  YLLDQQXXXXXXXXXXXXXXPEIANLLTKFTSIFEPLT 3
            +LL                 P+I  +L KF S+F+P T
Sbjct: 491  HLL----LPEKPNIEPDTTHPQIIPILDKFDSLFQPPT 524


>dbj|GAU18876.1| hypothetical protein TSUD_228660 [Trifolium subterraneum]
          Length = 1494

 Score =  548 bits (1412), Expect = e-176
 Identities = 284/517 (54%), Positives = 349/517 (67%), Gaps = 3/517 (0%)
 Frame = -2

Query: 1556 LSTEMTQLRTRLPPPGFGP-FSAEQRLTHPLSSTSIKLDIPRFNGTDALGWIFKINQFFD 1380
            L++E   +R+RLPPPGF P F++         +T++KLDIPRFNGTDA+GWIFKINQFFD
Sbjct: 35   LTSEFHDIRSRLPPPGFPPPFNSTGPDISQFPATTMKLDIPRFNGTDAMGWIFKINQFFD 94

Query: 1379 FHLTPEDQRLRIASFYMEGEALGWFQWMHSNGQLLSWHQFIHALEVRFAPSQYEDPQGAL 1200
            FH T +DQRLRIASFYMEGEAL WFQW+++NGQLL+W  F+ ALE RFAPS YEDP+GAL
Sbjct: 95   FHRTSDDQRLRIASFYMEGEALNWFQWLYANGQLLTWPIFLQALESRFAPSLYEDPKGAL 154

Query: 1199 FKLCQTTTVADYQASFEALANRIVGLQPQFYLSCFVSGLKPSIRREVLAFQPTTLTQAIN 1020
            FKLCQT +V +YQ+ FEALANRIVGL P FYLSCF+SGLKP+IRREV AFQP +LTQAI+
Sbjct: 155  FKLCQTASVREYQSQFEALANRIVGLPPPFYLSCFISGLKPAIRREVQAFQPLSLTQAIH 214

Query: 1019 LAKLQEDKIRDRSSSFXXXXXXXXXXXXXXXXXXXXXXXXXXALXXXXXXXXXXXXXPKP 840
            LA+LQE+K  DR+                                            PK 
Sbjct: 215  LARLQEEKFTDRAP----------------FPPKPFQPSSTAGSSTSSFKPTLSVAPPKS 258

Query: 839  VTPIKRLTPT*LQARRDKGLCYNCDELYYNGHRCRRQFHLLITEXXXXXXXXXXXXXIXX 660
              P+KRLTP  LQARRDKGLCYNCDE +  GHRC+RQFHLLI E                
Sbjct: 259  SPPVKRLTPDELQARRDKGLCYNCDERFQLGHRCKRQFHLLIVEPEESLEVGSTLQAFAG 318

Query: 659  XXXXXXXXXXT--NDSQPAQISLHALMGHAIPQTLRVLGYIGKQPVSILIDSGSTHNFIQ 486
                          D  PAQISLHALMGH IPQTLRV G+I + P++ILIDSGSTHNF+Q
Sbjct: 319  EESIIQDPPADPVQDPDPAQISLHALMGHTIPQTLRVTGHINQSPIAILIDSGSTHNFLQ 378

Query: 485  DRIIKQLNIQCKPTENFEVLVGNGEELHCSKMCHQLHLNIGSHDFSVDFYVLPISGAELV 306
            DR+ KQL +  +P  +F+VLVGNGE L C+  C Q+ L++G H F +D +VLP+SGAELV
Sbjct: 379  DRVAKQLGLPTEPAHSFKVLVGNGELLPCTSTCSQVTLSLGQHKFVLDLFVLPLSGAELV 438

Query: 305  LGIQWLRTLGPILTDYDNLTMEFTVNGQLVHLHGNTKPPPLEASLHQLQRMMHTHSVDTV 126
            LG+QWL+TLGPI+TDY+ LTM F+  G+ VHL G  KP P EA+LHQL R++ TH++DT 
Sbjct: 439  LGVQWLKTLGPIVTDYEKLTMSFSKEGETVHLAGVPKPGPEEANLHQLHRLVDTHAIDTC 498

Query: 125  IQFYLLDQQXXXXXXXXXXXXXXPEIANLLTKFTSIF 15
            ++ +L   +              P +ANLLT+FTS+F
Sbjct: 499  VRLHLFSTE-----PNPSTTTSDPRVANLLTQFTSLF 530


>gb|PNX94328.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
          Length = 1474

 Score =  545 bits (1405), Expect = e-176
 Identities = 286/521 (54%), Positives = 350/521 (67%), Gaps = 2/521 (0%)
 Frame = -2

Query: 1559 ALSTEMTQLRTRLPPPGFGPFSAEQRLTHPLSSTSIKLDIPRFNGTDALGWIFKINQFFD 1380
            +++ ++  LR+RL PPGF P     R  +P  +TSIKLDIPRF+G+D LGWIFKINQFFD
Sbjct: 27   SVAADIHDLRSRLGPPGFTP---HHRDLNPFPTTSIKLDIPRFDGSDPLGWIFKINQFFD 83

Query: 1379 FHLTPEDQRLRIASFYMEGEALGWFQWMHSNGQLLSWHQFIHALEVRFAPSQYEDPQGAL 1200
            +H TPE+QRLRIASFYM+GEAL WFQWMH NGQ+L+W  F+HALE RFAPSQYEDP+GAL
Sbjct: 84   YHTTPEEQRLRIASFYMDGEALTWFQWMHQNGQILTWATFLHALETRFAPSQYEDPRGAL 143

Query: 1199 FKLCQTTTVADYQASFEALANRIVGLQPQFYLSCFVSGLKPSIRREVLAFQPTTLTQAIN 1020
            FKL QT+TV +YQ  FEALANRI GL P  YLSCF+SGLKP+IRREVLAFQP TL QAI+
Sbjct: 144  FKLSQTSTVKEYQNQFEALANRITGLPPSCYLSCFISGLKPAIRREVLAFQPVTLIQAIS 203

Query: 1019 LAKLQEDKIRDRSSSFXXXXXXXXXXXXXXXXXXXXXXXXXXALXXXXXXXXXXXXXPKP 840
            LAKLQEDK  DRS                                            PK 
Sbjct: 204  LAKLQEDKFSDRS---------------FHPNRTNTATSSQSPNTNSSFKPTMSVVAPKT 248

Query: 839  VTPIKRLTPT*LQARRDKGLCYNCDELYYNGHRCRRQFHLLITEXXXXXXXXXXXXXIXX 660
             T +KRL+P  LQARR+KGLCYNCDE Y  GHRC+R FHLLI E                
Sbjct: 249  QTAVKRLSPEELQARREKGLCYNCDERYQRGHRCKRLFHLLIVEPEDSTEDATSFHLESS 308

Query: 659  XXXXXXXXXXTNDSQ--PAQISLHALMGHAIPQTLRVLGYIGKQPVSILIDSGSTHNFIQ 486
                      T++S+  PAQISLHALMGH IPQTLRV+G I  +PV+ILIDSGSTHNF+Q
Sbjct: 309  DPDPIVVESKTSESEPDPAQISLHALMGHTIPQTLRVMGQIHNKPVAILIDSGSTHNFLQ 368

Query: 485  DRIIKQLNIQCKPTENFEVLVGNGEELHCSKMCHQLHLNIGSHDFSVDFYVLPISGAELV 306
            DR+ +QL +  +   +F+VLVGNGE L+C+ MC Q  L +GSH+FSVD ++LP+SGAELV
Sbjct: 369  DRVARQLGLSTEEAHSFKVLVGNGEVLNCTSMCPQTTLLLGSHEFSVDLFILPLSGAELV 428

Query: 305  LGIQWLRTLGPILTDYDNLTMEFTVNGQLVHLHGNTKPPPLEASLHQLQRMMHTHSVDTV 126
            LG+QWL+TLGPI+TDYD LTM F   GQ +HL G  K  P EA++HQLQR++ T+++DT+
Sbjct: 429  LGVQWLKTLGPIVTDYDKLTMSFFSEGQQIHLKGVPKANPEEANIHQLQRLVSTNAIDTL 488

Query: 125  IQFYLLDQQXXXXXXXXXXXXXXPEIANLLTKFTSIFEPLT 3
            +   L+  +                I  LLTKF++IF+  T
Sbjct: 489  LNLQLIQPE----EPSNSNPHPDERINKLLTKFSTIFKTPT 525


>dbj|GAU35886.1| hypothetical protein TSUD_383780 [Trifolium subterraneum]
          Length = 1396

 Score =  534 bits (1375), Expect = e-172
 Identities = 281/520 (54%), Positives = 345/520 (66%), Gaps = 2/520 (0%)
 Frame = -2

Query: 1556 LSTEMTQLRTRLPPPGFGPFSAEQRLTHPLSSTSIKLDIPRFNGTDALGWIFKINQFFDF 1377
            ++ E+ QLR RLPPPGF PF  +         T+IKL+IP+F+G++ALGWIFKI QFFDF
Sbjct: 26   VTQELNQLRARLPPPGF-PFPHDPGPPPQPHHTTIKLEIPKFDGSNALGWIFKITQFFDF 84

Query: 1376 HLTPEDQRLRIASFYMEGEALGWFQWMHSNGQLLSWHQFIHALEVRFAPSQYEDPQGALF 1197
            H TPEDQR+R+ASFYMEGEAL W+QW+H+NGQL +W  F+ +LE+RFAPSQYEDP+GALF
Sbjct: 85   HRTPEDQRIRMASFYMEGEALTWYQWLHNNGQLQTWPMFVQSLELRFAPSQYEDPKGALF 144

Query: 1196 KLCQTTTVADYQASFEALANRIVGLQPQFYLSCFVSGLKPSIRREVLAFQPTTLTQAINL 1017
            KLCQT ++ DYQ  FE+LANRIVGL   FYLSCFVSGLKP IRREV AFQP +LTQAI+L
Sbjct: 145  KLCQTGSIKDYQGEFESLANRIVGLPTPFYLSCFVSGLKPEIRREVQAFQPFSLTQAISL 204

Query: 1016 AKLQEDKIRDRSSSFXXXXXXXXXXXXXXXXXXXXXXXXXXALXXXXXXXXXXXXXPKPV 837
            AKLQEDK+ DR++S                                          PK  
Sbjct: 205  AKLQEDKVNDRNNS-----SQTRKPSGSAPTAPSSSTLTQPPFKPFQNSPPQPNTPPKTS 259

Query: 836  TPIKRLTPT*LQARRDKGLCYNCDELYYNGHRCRRQFHLLIT--EXXXXXXXXXXXXXIX 663
            TPIKRL+P  LQ RR+KGLCYNCD+ +  GHRC+R FH+LI   E             + 
Sbjct: 260  TPIKRLSPQELQTRREKGLCYNCDDKFAPGHRCKRSFHILIAEPETDPFTTEQLTLALLD 319

Query: 662  XXXXXXXXXXXTNDSQPAQISLHALMGHAIPQTLRVLGYIGKQPVSILIDSGSTHNFIQD 483
                        ND   AQISLHALMGH IPQTL+V G I K PV +LIDSGSTHNFIQD
Sbjct: 320  SATPKPTLPEPQNDPNQAQISLHALMGHTIPQTLKVKGQIHKSPVVLLIDSGSTHNFIQD 379

Query: 482  RIIKQLNIQCKPTENFEVLVGNGEELHCSKMCHQLHLNIGSHDFSVDFYVLPISGAELVL 303
            RI+KQL +  +P ++F+VLVGNGEEL C+ MC Q  L +G H FSVD +VLP+SGA +VL
Sbjct: 380  RIVKQLGLPLQPAQSFQVLVGNGEELQCNFMCQQTDLMVGPHHFSVDLFVLPLSGANIVL 439

Query: 302  GIQWLRTLGPILTDYDNLTMEFTVNGQLVHLHGNTKPPPLEASLHQLQRMMHTHSVDTVI 123
            G+QWL+TLGP+LTDY++LTM+F  +G LV L G  K  PLE+SLHQL+R++ T+S+D   
Sbjct: 440  GVQWLKTLGPVLTDYEHLTMQFMKDGSLVQLIGEPKSSPLESSLHQLKRLVTTNSLDLSY 499

Query: 122  QFYLLDQQXXXXXXXXXXXXXXPEIANLLTKFTSIFEPLT 3
               LL                 P I +LL K+  +FEP T
Sbjct: 500  HIQLLS----LTNDTTQNPIHHPAIPHLLEKYHHLFEPPT 535


>dbj|GAU15122.1| hypothetical protein TSUD_08600 [Trifolium subterraneum]
          Length = 1422

 Score =  534 bits (1375), Expect = e-172
 Identities = 280/518 (54%), Positives = 345/518 (66%)
 Frame = -2

Query: 1556 LSTEMTQLRTRLPPPGFGPFSAEQRLTHPLSSTSIKLDIPRFNGTDALGWIFKINQFFDF 1377
            ++ E   LR+RLPPPGF P      L   + +TSIKLDIPRF+GTD +GWIFKINQFF +
Sbjct: 28   IADEFHGLRSRLPPPGFAP------LPSAVPATSIKLDIPRFDGTDPMGWIFKINQFFYY 81

Query: 1376 HLTPEDQRLRIASFYMEGEALGWFQWMHSNGQLLSWHQFIHALEVRFAPSQYEDPQGALF 1197
            HLTP++QRLRIASFYM+GEAL WFQWMHSNGQ+L+W  F+HALE RFAPSQYEDP+GALF
Sbjct: 82   HLTPDEQRLRIASFYMDGEALPWFQWMHSNGQILTWTSFLHALETRFAPSQYEDPKGALF 141

Query: 1196 KLCQTTTVADYQASFEALANRIVGLQPQFYLSCFVSGLKPSIRREVLAFQPTTLTQAINL 1017
            K  QT +V DYQ  FE LANRI GL P FYLSCFVSGLKP+IRREV AFQP TL QAINL
Sbjct: 142  KHTQTGSVKDYQGQFEMLANRITGLSPPFYLSCFVSGLKPAIRREVQAFQPLTLNQAINL 201

Query: 1016 AKLQEDKIRDRSSSFXXXXXXXXXXXXXXXXXXXXXXXXXXALXXXXXXXXXXXXXPKPV 837
            AKLQE+K+ D SS                                           PKP 
Sbjct: 202  AKLQEEKLSDHSS---------------HASIPKSQPTVTPTASSSHFRPTMTVHPPKPQ 246

Query: 836  TPIKRLTPT*LQARRDKGLCYNCDELYYNGHRCRRQFHLLITEXXXXXXXXXXXXXIXXX 657
              IKRL+P  LQ RR+KGLCYNCDE Y  GHRC+R FHLLI E                 
Sbjct: 247  PTIKRLSPAELQVRREKGLCYNCDEKYAQGHRCKRIFHLLIVE-----PEDDVTDASTFQ 301

Query: 656  XXXXXXXXXTNDSQPAQISLHALMGHAIPQTLRVLGYIGKQPVSILIDSGSTHNFIQDRI 477
                      + + PAQISLHALMGH+IPQTLRV+G I    V +LIDSGSTHNF+Q R+
Sbjct: 302  MEVPNSETQVDCTDPAQISLHALMGHSIPQTLRVVGQIHNHSVGVLIDSGSTHNFVQARV 361

Query: 476  IKQLNIQCKPTENFEVLVGNGEELHCSKMCHQLHLNIGSHDFSVDFYVLPISGAELVLGI 297
            +KQL +  +PT++F+VLV NGE+L+ S +C Q+ L +G H+F VD +VLP+SGAELVLG+
Sbjct: 362  VKQLGLVTQPTQSFKVLVENGEQLNYSTICSQVSLFLGPHEFVVDLFVLPLSGAELVLGV 421

Query: 296  QWLRTLGPILTDYDNLTMEFTVNGQLVHLHGNTKPPPLEASLHQLQRMMHTHSVDTVIQF 117
            QWL+TLGPI+TDY++LTM FT NG  +HL G  KP P E+++HQL R++ T+++DT++  
Sbjct: 422  QWLKTLGPIITDYEHLTMSFTKNGHPIHLSGVPKPSPQESNIHQLHRLVETNAIDTLLHL 481

Query: 116  YLLDQQXXXXXXXXXXXXXXPEIANLLTKFTSIFEPLT 3
             L+  +              P+I ++LTKF S+F   T
Sbjct: 482  QLIVPE-----NPKQEKPQIPQIESILTKFESLFNTPT 514


>gb|PNY17392.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 1510

 Score =  535 bits (1378), Expect = e-171
 Identities = 283/524 (54%), Positives = 339/524 (64%), Gaps = 5/524 (0%)
 Frame = -2

Query: 1559 ALSTEMTQLRTRLPPPGFGPFSAEQRLTHPLSSTSIKLDIPRFNGTDALGWIFKINQFFD 1380
            AL+T++  LR R+ PPGF P   +     P+ +TSIKLDIPRF+GTD LGWIFKI QFFD
Sbjct: 34   ALATDVNNLRARMGPPGFPPPHPDPP---PIHTTSIKLDIPRFDGTDPLGWIFKITQFFD 90

Query: 1379 FHLTPEDQRLRIASFYMEGEALGWFQWMHSNGQLLSWHQFIHALEVRFAPSQYEDPQGAL 1200
            +HLTPE+QRLRIASFYMEG AL WFQWMH NGQLL+W  F+HALE+RFAPSQYEDP+G L
Sbjct: 91   YHLTPEEQRLRIASFYMEGAALTWFQWMHQNGQLLTWANFLHALEIRFAPSQYEDPKGTL 150

Query: 1199 FKLCQTTTVADYQASFEALANRIVGLQPQFYLSCFVSGLKPSIRREVLAFQPTTLTQAIN 1020
            FKL QTTTV +YQA FE+LANRI GL P  YLSCF+SGLKP+IRREVLAFQP TL QAI+
Sbjct: 151  FKLTQTTTVKEYQAQFESLANRITGLPPACYLSCFISGLKPAIRREVLAFQPVTLIQAIS 210

Query: 1019 LAKLQEDKIRDRSSSFXXXXXXXXXXXXXXXXXXXXXXXXXXALXXXXXXXXXXXXXPKP 840
            LAKLQE+K  DR  S                                          PKP
Sbjct: 211  LAKLQEEKHLDRIPSLSRPSPSATG-------------------SSSSFKPTMTIIPPKP 251

Query: 839  VTPIKRLTPT*LQARRDKGLCYNCDELYYNGHRCRRQFHLLITE-----XXXXXXXXXXX 675
               +KRL+P  LQARR+KGLCYNCDE Y  GHRC+R FH+LI E                
Sbjct: 252  QPVVKRLSPDELQARREKGLCYNCDETYQRGHRCKRSFHILIVEPDDVVEDASSFQLDGT 311

Query: 674  XXIXXXXXXXXXXXXTNDSQPAQISLHALMGHAIPQTLRVLGYIGKQPVSILIDSGSTHN 495
                             D  PAQISLHALMGH IPQTLRV+G I   PV+ILIDSGSTHN
Sbjct: 312  QVELEPVVDPTVQTTDPDPDPAQISLHALMGHTIPQTLRVMGQIHNSPVAILIDSGSTHN 371

Query: 494  FIQDRIIKQLNIQCKPTENFEVLVGNGEELHCSKMCHQLHLNIGSHDFSVDFYVLPISGA 315
            F+QDR+ +QL ++ +   +F VLVGNGEEL C+ MC Q  L +GSH F+VD +VLPISGA
Sbjct: 372  FLQDRVARQLGLKTEQAHSFRVLVGNGEELQCTAMCPQTKLLLGSHLFTVDLFVLPISGA 431

Query: 314  ELVLGIQWLRTLGPILTDYDNLTMEFTVNGQLVHLHGNTKPPPLEASLHQLQRMMHTHSV 135
            ELVLG+QWL+TLGP++TDY+ LTM F   GQ + L G  K  P EA++HQLQR++ T ++
Sbjct: 432  ELVLGVQWLKTLGPVITDYEKLTMSFYKEGQQIQLTGVPKASPAEANIHQLQRLLATDAI 491

Query: 134  DTVIQFYLLDQQXXXXXXXXXXXXXXPEIANLLTKFTSIFEPLT 3
            DT +   L+  +              P +  LL +F S+F   T
Sbjct: 492  DTFLHLQLIQPE----PPHNPPSHSDPRVEQLLQQFASLFNSPT 531


>gb|PNX72195.1| retrotransposon-related protein, partial [Trifolium pratense]
          Length = 938

 Score =  513 bits (1321), Expect = e-169
 Identities = 274/524 (52%), Positives = 340/524 (64%), Gaps = 6/524 (1%)
 Frame = -2

Query: 1556 LSTEMTQLRTRLPPPGFGPFSAEQRLTHPLSSTSIKLDIPRFNGTDALGWIFKINQFFDF 1377
            ++ E   LR RLPPPGFGP       T P  +TSIKLDIPRF+GTD +GWIFKINQFFD+
Sbjct: 28   VTDEFHGLRARLPPPGFGP--PPTMTTVP--ATSIKLDIPRFDGTDPMGWIFKINQFFDY 83

Query: 1376 HLTPEDQRLRIASFYMEGEALGWFQWMHSNGQLLSWHQFI-----HALEVR-FAPSQYED 1215
            HLTP++QRLRIASFYM+G+AL WFQWMHSNGQ+L+W  F+     +A  +  +    Y D
Sbjct: 84   HLTPDEQRLRIASFYMDGDALPWFQWMHSNGQILTWTAFLXMNNGYASRLSTWTAKPYHD 143

Query: 1214 PQGALFKLCQTTTVADYQASFEALANRIVGLQPQFYLSCFVSGLKPSIRREVLAFQPTTL 1035
            P+GALFKL QT +V +YQ  FE LANRI GL P FYLSCFVSGLKP+IRREV+AFQP TL
Sbjct: 144  PKGALFKLTQTGSVKEYQGQFELLANRISGLPPPFYLSCFVSGLKPAIRREVMAFQPGTL 203

Query: 1034 TQAINLAKLQEDKIRDRSSSFXXXXXXXXXXXXXXXXXXXXXXXXXXALXXXXXXXXXXX 855
             QAINLAKLQE+K+   +  F                                       
Sbjct: 204  NQAINLAKLQEEKLSAYTPPFTKPASHTAAASSSFRPTMTVHPP---------------- 247

Query: 854  XXPKPVTPIKRLTPT*LQARRDKGLCYNCDELYYNGHRCRRQFHLLITEXXXXXXXXXXX 675
               KP   IKRL+P  LQARR+KGLCYNCD+ Y  GHRC+R FHLLI E           
Sbjct: 248  ---KPQATIKRLSPAELQARREKGLCYNCDDKYVQGHRCKRTFHLLIVEPDEEVNDASTL 304

Query: 674  XXIXXXXXXXXXXXXTNDSQPAQISLHALMGHAIPQTLRVLGYIGKQPVSILIDSGSTHN 495
                             +  PAQISLHALMGH+IPQTLRVLG I   PV +LIDSGSTHN
Sbjct: 305  QMHVPDPVIQVDIEVP-EPDPAQISLHALMGHSIPQTLRVLGQICNNPVGVLIDSGSTHN 363

Query: 494  FIQDRIIKQLNIQCKPTENFEVLVGNGEELHCSKMCHQLHLNIGSHDFSVDFYVLPISGA 315
            F+QDR++KQL +  +P  +F+VLVGNGE+L+C+ +C Q+ L +G H+F+VD +VLP+SGA
Sbjct: 364  FVQDRVVKQLGLIPQPAHSFKVLVGNGEQLNCATLCSQVPLFLGPHEFTVDLFVLPLSGA 423

Query: 314  ELVLGIQWLRTLGPILTDYDNLTMEFTVNGQLVHLHGNTKPPPLEASLHQLQRMMHTHSV 135
            ELVLG+QWL+TLGPILTDY+ LTM FT +G  +HL G  +P P E+++HQLQR++ T+++
Sbjct: 424  ELVLGVQWLKTLGPILTDYEKLTMSFTKDGCPIHLSGAPRPSPQESNIHQLQRLVQTNAL 483

Query: 134  DTVIQFYLLDQQXXXXXXXXXXXXXXPEIANLLTKFTSIFEPLT 3
            DT +   LL                 P+I  LLTKF  +F+P T
Sbjct: 484  DTFLHLQLLQPD-----PIETPNTSIPQIDQLLTKFNLLFQPPT 522


>dbj|GAU31589.1| hypothetical protein TSUD_54120 [Trifolium subterraneum]
          Length = 1184

 Score =  483 bits (1243), Expect = e-154
 Identities = 261/524 (49%), Positives = 324/524 (61%), Gaps = 5/524 (0%)
 Frame = -2

Query: 1559 ALSTEMTQLRTRLPPPGFG-PFSAEQRLTHPLSSTSIKLDIPRFNGTDALGWIFKINQFF 1383
            AL+ ++  LRTR+ PPGF  P +A+     P  +TSIKLDIPRF+G+D LGWIFKI QFF
Sbjct: 35   ALAADVNTLRTRMGPPGFTFPHNADPP---PFPTTSIKLDIPRFDGSDPLGWIFKITQFF 91

Query: 1382 DFHLTPEDQRLRIASFYMEGEALGWFQWMHSNGQLLSWHQFIHALEVRFAPSQYEDPQGA 1203
            D+H TP++QRLR+ASFYMEGEAL WF+WMH N QLL+W  F+HALE+RFAPSQYED +GA
Sbjct: 92   DYHRTPDEQRLRVASFYMEGEALTWFRWMHQNDQLLTWTTFLHALEIRFAPSQYEDLKGA 151

Query: 1202 LFKLCQTTTVADYQASFEALANRIVGLQPQFYLSCFVSGLKPSIRREVLAFQPTTLTQAI 1023
            LFKL QT++V +YQ  FE+LANRIVGL P  YLSCFVSGLKP IR EVL FQP TLTQAI
Sbjct: 152  LFKLSQTSSVKEYQTQFESLANRIVGLSPSCYLSCFVSGLKPEIRHEVLGFQPVTLTQAI 211

Query: 1022 NLAKLQEDKIRDRSSSFXXXXXXXXXXXXXXXXXXXXXXXXXXALXXXXXXXXXXXXXPK 843
            +LAKLQE+K+ DR  S                                            
Sbjct: 212  SLAKLQEEKLADRPLS-------------------------------------------- 227

Query: 842  PVTPIKRLTPT*LQARRDKGLCYNCDELYYNGHRCRRQFHLLITE----XXXXXXXXXXX 675
              TP  + + +    +R+KGLCYNCDE +  GHRC+R FHL I E               
Sbjct: 228  --TPKPQASISASSTQREKGLCYNCDEKFQRGHRCKRLFHLRIVEPDDSPEEASSFQLEG 285

Query: 674  XXIXXXXXXXXXXXXTNDSQPAQISLHALMGHAIPQTLRVLGYIGKQPVSILIDSGSTHN 495
                             D  P QISLHALMG  IPQTLRV+G I   PV++L DSG    
Sbjct: 286  NQPEPTMVEETSLDLGVDVDPTQISLHALMGQLIPQTLRVMGQIHHTPVAVLKDSGRPIM 345

Query: 494  FIQDRIIKQLNIQCKPTENFEVLVGNGEELHCSKMCHQLHLNIGSHDFSVDFYVLPISGA 315
            F+QDR+ +QL ++ +P  +F VLVGN EEL C+ +C Q+ L +GSH F+VD +VLPISGA
Sbjct: 346  FLQDRVARQLGLRTEPAHSFRVLVGNAEELQCTTLCPQIPLLLGSHQFTVDLFVLPISGA 405

Query: 314  ELVLGIQWLRTLGPILTDYDNLTMEFTVNGQLVHLHGNTKPPPLEASLHQLQRMMHTHSV 135
            ELVLG+QWL+TLGPI+TDYD LTM F   GQ V L G  K  P EA++HQLQR++ T+++
Sbjct: 406  ELVLGVQWLKTLGPIITDYDKLTMSFCKEGQQVLLTGVPKASPEEANIHQLQRLLSTNAI 465

Query: 134  DTVIQFYLLDQQXXXXXXXXXXXXXXPEIANLLTKFTSIFEPLT 3
            DT     LL  +                +  LL KF ++F+  T
Sbjct: 466  DTFFHLQLLHPE----STTPSLNHQDSRVTELLHKFQTLFQTPT 505


>dbj|GAU45976.1| hypothetical protein TSUD_401160 [Trifolium subterraneum]
          Length = 1273

 Score =  484 bits (1247), Expect = e-154
 Identities = 245/456 (53%), Positives = 305/456 (66%), Gaps = 1/456 (0%)
 Frame = -2

Query: 1556 LSTEMTQLRTRLPPPGFGPFSA-EQRLTHPLSSTSIKLDIPRFNGTDALGWIFKINQFFD 1380
            L+ EMTQ+RTRLPPPGF   +  E +   P + +SIKL+IP+F+GTD L WIFKI+QFFD
Sbjct: 32   LAAEMTQMRTRLPPPGFQSSTQNELQPQQPYTPSSIKLEIPKFDGTDPLNWIFKISQFFD 91

Query: 1379 FHLTPEDQRLRIASFYMEGEALGWFQWMHSNGQLLSWHQFIHALEVRFAPSQYEDPQGAL 1200
            FH TP+ QRLR+ASFYMEGEAL WFQW+HSNG+L+SW   +HALE+RFAPSQYEDP+G+L
Sbjct: 92   FHQTPDAQRLRLASFYMEGEALTWFQWLHSNGKLVSWPMLLHALELRFAPSQYEDPKGSL 151

Query: 1199 FKLCQTTTVADYQASFEALANRIVGLQPQFYLSCFVSGLKPSIRREVLAFQPTTLTQAIN 1020
            FKLCQT++V +YQA FEALANRI+GL   FYLSCF+SGLKP IRREV AFQP +L+ AI+
Sbjct: 152  FKLCQTSSVKEYQAEFEALANRIIGLPAPFYLSCFISGLKPEIRREVQAFQPISLSHAIS 211

Query: 1019 LAKLQEDKIRDRSSSFXXXXXXXXXXXXXXXXXXXXXXXXXXALXXXXXXXXXXXXXPKP 840
            LA  ++ ++                                                PK 
Sbjct: 212  LANYKKTRL---------MIEPIAVPQTLSLDLIHLSSLAQFFAHPHPPLLPQLPPPPKT 262

Query: 839  VTPIKRLTPT*LQARRDKGLCYNCDELYYNGHRCRRQFHLLITEXXXXXXXXXXXXXIXX 660
             TPIKRL+P  LQARR+KGLCYNCDE Y  GHRC+R FH+LI E             +  
Sbjct: 263  PTPIKRLSPQELQARREKGLCYNCDEKYAPGHRCKRTFHILIAEPDIPSTSLDLSTQLLL 322

Query: 659  XXXXXXXXXXTNDSQPAQISLHALMGHAIPQTLRVLGYIGKQPVSILIDSGSTHNFIQDR 480
                        +  P QISLHAL+GH+ PQTLR LG+I K PV +L+DSGSTHNFIQDR
Sbjct: 323  EPKTQPPADPLPEPDPTQISLHALLGHSKPQTLRFLGHINKSPVVVLVDSGSTHNFIQDR 382

Query: 479  IIKQLNIQCKPTENFEVLVGNGEELHCSKMCHQLHLNIGSHDFSVDFYVLPISGAELVLG 300
            I+KQL +    +  F+VLVGNGEEL C  MC Q+ L I SH   +D +VLP+SGA +VLG
Sbjct: 383  IVKQLGLPQTLSHTFQVLVGNGEELKCDTMCQQVDLTIDSHHVLMDLFVLPLSGANIVLG 442

Query: 299  IQWLRTLGPILTDYDNLTMEFTVNGQLVHLHGNTKP 192
            +QWL+TLGP+LTDY+ LT++F  NGQ+  + G  +P
Sbjct: 443  VQWLKTLGPVLTDYNQLTLKFLKNGQIAQIQGIIRP 478


>dbj|GAU30089.1| hypothetical protein TSUD_392450 [Trifolium subterraneum]
          Length = 1853

 Score =  494 bits (1273), Expect = e-154
 Identities = 272/540 (50%), Positives = 345/540 (63%), Gaps = 22/540 (4%)
 Frame = -2

Query: 1556 LSTEMTQLRTRLPPPGF--GPFSAEQRLTH-PLSSTSIKLDIPRFNGTDALGWIFKINQF 1386
            L+TE+ QLR R+ PPGF  GP    + L H P +++SIKL+IP F+G+D L WIFKINQF
Sbjct: 36   LTTEVAQLRHRVGPPGFTQGP----EHLHHKPFTTSSIKLEIPGFDGSDPLPWIFKINQF 91

Query: 1385 FDFHLTPEDQRLRIASFYMEGEALGWFQWMHSNGQLLSWHQFIHALEVRFAPSQYEDPQG 1206
            F+FH TPE+QRLR+ASFYM+GEAL W+QW+HSNGQLLSW QF+HALE+RFAPS Y+DP+G
Sbjct: 92   FEFHNTPEEQRLRLASFYMQGEALTWYQWLHSNGQLLSWQQFLHALELRFAPSHYDDPKG 151

Query: 1205 ALFKLCQTTTVADYQASFEALANRIVGLQPQFYLSCFVSGLKPSIRREVLAFQPTTLTQA 1026
            ALFKLCQT++V DYQ +FE+LANRI GL  QF+LSCF+SGLKP IRREV AFQP +L+ A
Sbjct: 152  ALFKLCQTSSVKDYQTTFESLANRINGLPSQFFLSCFISGLKPDIRREVQAFQPISLSHA 211

Query: 1025 INLAKLQEDKIRDRSSSFXXXXXXXXXXXXXXXXXXXXXXXXXXALXXXXXXXXXXXXXP 846
            I+LAKLQEDK+ DR  +                                          P
Sbjct: 212  ISLAKLQEDKLADRGYN---------------NSNTATSSKQPFRPPITTASTLKPQNAP 256

Query: 845  KPVTPIKRLTPT*LQARRDKGLCYNCDE------------LYYNGHRCRRQFHLLITEXX 702
            K   PIKRL+P  LQARR++GLCYNCDE            L+ + +  + +  L      
Sbjct: 257  KTPPPIKRLSPAELQARREQGLCYNCDEPNYFLLLTPPKTLHPHNNPPQTRPKLAFMPLW 316

Query: 701  XXXXXXXXXXXIXXXXXXXXXXXXTNDSQP-------AQISLHALMGHAIPQTLRVLGYI 543
                                     N + P       AQISLHALMGH IPQTLRV+G++
Sbjct: 317  ATLSPKPFKANTTLSQLLLTLDTTQNSAPPQQPISNQAQISLHALMGHPIPQTLRVVGHV 376

Query: 542  GKQPVSILIDSGSTHNFIQDRIIKQLNIQCKPTENFEVLVGNGEELHCSKMCHQLHLNIG 363
             K P+++LIDSGSTHNFIQDRI KQL ++ +P + F+VLVGNGEEL CS  C  L + +G
Sbjct: 377  AKSPITVLIDSGSTHNFIQDRIAKQLGLKLEPAQEFQVLVGNGEELQCSYFCPNLAITLG 436

Query: 362  SHDFSVDFYVLPISGAELVLGIQWLRTLGPILTDYDNLTMEFTVNGQLVHLHGNTKPPPL 183
            S+ F VD +VLP+SGAELVLG+QWL+TLGPILTD++ LTM+F  NG++V + G  KP P 
Sbjct: 437  SNKFLVDVFVLPLSGAELVLGVQWLQTLGPILTDFEKLTMKFFYNGEVVQIAGTPKPSPE 496

Query: 182  EASLHQLQRMMHTHSVDTVIQFYLLDQQXXXXXXXXXXXXXXPEIANLLTKFTSIFEPLT 3
            EASLHQL+R++ T+++DT         Q              PEI  LL +F+ +FE  T
Sbjct: 497  EASLHQLKRLVSTNALDTFFHI-----QASPSSPDNSPPPDDPEIQLLLQRFSKLFETPT 551


>dbj|GAU36702.1| hypothetical protein TSUD_16140 [Trifolium subterraneum]
          Length = 1358

 Score =  464 bits (1195), Expect = e-146
 Identities = 259/544 (47%), Positives = 320/544 (58%), Gaps = 2/544 (0%)
 Frame = -2

Query: 1634 SSTPDIAXXXXXXXXXXXXXXXXXTALSTEMTQLRTRLPPPGFGPFSAEQRLTHPLSSTS 1455
            S+TP +                   +++ ++  LR+RL PPGF P     R   P  ST+
Sbjct: 4    STTPSVEDLASAIHNLIQSQQSFQASVAHDIHDLRSRLGPPGFPP---PPRDVTPFPSTT 60

Query: 1454 IKLDIPRFNGTDALGWIFKINQFFDFHLTPEDQRLRIASFYMEGEALGWFQWMHSNGQLL 1275
            IKLDIPRF+GTD LGWIFKI QFFD+H TPE+QRLRIASFYM+GEAL WFQWMH NGQ+L
Sbjct: 61   IKLDIPRFDGTDPLGWIFKITQFFDYHATPEEQRLRIASFYMDGEALTWFQWMHQNGQIL 120

Query: 1274 SWHQFIHALEVRFAPSQYEDPQGALFKLCQTTTVADYQASFEALANRIVGLQPQFYLSCF 1095
            +W  F+HALE RFAPSQYEDP+GALFKL Q  +V  YQA FE LANRIV +         
Sbjct: 121  TWTTFLHALETRFAPSQYEDPKGALFKLSQIGSVKAYQAQFETLANRIVVI--------- 171

Query: 1094 VSGLKPSIRREVLAFQPTTLTQAINLAKLQEDKIRDRSSSFXXXXXXXXXXXXXXXXXXX 915
                               LTQAI+LAKLQE+K  DR                       
Sbjct: 172  -------------------LTQAISLAKLQEEKFADRG------------------FIPP 194

Query: 914  XXXXXXXALXXXXXXXXXXXXXPKPVTPIKRLTPT*LQARRDKGLCYNCDELYYNGHRCR 735
                   +              PKP T +KRL+P  LQARRD GLCYNCDE Y  GHRC+
Sbjct: 195  RSAAASTSNPNSSFKPTMSVTSPKPQTTVKRLSPDELQARRDAGLCYNCDEKYQRGHRCK 254

Query: 734  RQFHLLITEXXXXXXXXXXXXXIXXXXXXXXXXXXTND--SQPAQISLHALMGHAIPQTL 561
            R FHLLI E                           +D  S  AQISLHALMGH IPQTL
Sbjct: 255  RLFHLLIVEPDDTVEESSSFHLAAADSEPEPVVPSESDPASDTAQISLHALMGHTIPQTL 314

Query: 560  RVLGYIGKQPVSILIDSGSTHNFIQDRIIKQLNIQCKPTENFEVLVGNGEELHCSKMCHQ 381
            RV+G I   PV+ILIDSGSTHNF+QDR+  QL +  +P  +F+VLVGNGE L CS MC Q
Sbjct: 315  RVMGQIRNNPVAILIDSGSTHNFLQDRVAHQLGLSTEPAHSFKVLVGNGEVLTCSSMCPQ 374

Query: 380  LHLNIGSHDFSVDFYVLPISGAELVLGIQWLRTLGPILTDYDNLTMEFTVNGQLVHLHGN 201
              L +GSH+F VD ++LP+SGAELVLG+QWL+TLGPI+TDY+ LTM F  +GQ +HL G 
Sbjct: 375  TPLLLGSHEFLVDLFILPLSGAELVLGVQWLKTLGPIVTDYEKLTMSFCSDGQQIHLTGV 434

Query: 200  TKPPPLEASLHQLQRMMHTHSVDTVIQFYLLDQQXXXXXXXXXXXXXXPEIANLLTKFTS 21
             K    EA++HQL R++ T ++DT +  +L+  +              P + +LL+ F+S
Sbjct: 435  PKGNLEEANIHQLHRLLSTDAIDTFLHLHLISPE--STINPPTPSHPEPRVHDLLSNFSS 492

Query: 20   IFEP 9
            +F+P
Sbjct: 493  LFQP 496


>gb|PNX76318.1| retrotransposon-related protein, partial [Trifolium pratense]
          Length = 842

 Score =  435 bits (1119), Expect = e-140
 Identities = 225/414 (54%), Positives = 279/414 (67%), Gaps = 9/414 (2%)
 Frame = -2

Query: 1331 MEGEALGWFQWMHSNGQLLSWHQFIHALEVRFAPSQYEDPQGALFKLCQTTTVADYQASF 1152
            MEG+AL W+QWMHSNG L SW  F+HALE+RFAPSQ++DP+GALFKLCQTTTV+DYQ +F
Sbjct: 1    MEGDALTWYQWMHSNGSLHSWPAFLHALEIRFAPSQFDDPKGALFKLCQTTTVSDYQKAF 60

Query: 1151 EALANRIVGLQPQFYLSCFVSGLKPSIRREVLAFQPTTLTQAINLAKLQEDKIRDRS-SS 975
            EALANRI  L PQFYLSCF+SGLK  IRREV AFQP +LT AI+LAKLQE+KI DRS + 
Sbjct: 61   EALANRITDLPPQFYLSCFISGLKAEIRREVQAFQPVSLTHAISLAKLQEEKINDRSFNP 120

Query: 974  FXXXXXXXXXXXXXXXXXXXXXXXXXXALXXXXXXXXXXXXXPKPV--TPIKRLTPT*LQ 801
            +                          A                P   TPIKRLTP  LQ
Sbjct: 121  YRRTDTTTNNQRPPQRPFITTNQNTTAAPTSTITPSSSTTSNTNPPRQTPIKRLTPAELQ 180

Query: 800  ARRDKGLCYNCDELYYNGHRCRRQFHLLITEXXXXXXXXXXXXXIXXXXXXXXXXXXTND 621
            ARR++GLCYNCDE Y  GHRCRRQF +LI E                            D
Sbjct: 181  ARRERGLCYNCDERYQPGHRCRRQFFILIAEPETFDQQTDTLTNTLLQIETDPTPQPQPD 240

Query: 620  S-----QPA-QISLHALMGHAIPQTLRVLGYIGKQPVSILIDSGSTHNFIQDRIIKQLNI 459
                  +P+ QISLHAL+GH IPQTLR+LG I  QP+++L+DSGSTHNFIQDR+ K L +
Sbjct: 241  PTDPSPEPSPQISLHALLGHTIPQTLRLLGQIHNQPLNVLVDSGSTHNFIQDRVAKLLGL 300

Query: 458  QCKPTENFEVLVGNGEELHCSKMCHQLHLNIGSHDFSVDFYVLPISGAELVLGIQWLRTL 279
              KP +NF+VLVGNGEEL C+ +C+Q  L I S+ F VD +VLP+SGAE+VLG+QWL+TL
Sbjct: 301  PMKPIQNFQVLVGNGEELSCTHICYQTPLYIDSNLFLVDLFVLPLSGAEIVLGVQWLKTL 360

Query: 278  GPILTDYDNLTMEFTVNGQLVHLHGNTKPPPLEASLHQLQRMMHTHSVDTVIQF 117
            GP LTDYD+LT+ F+ +G ++ L G  + PP E+SLHQ +R++ TH++DT++QF
Sbjct: 361  GPSLTDYDHLTLSFSRDGHIIQLMGQHRTPPQESSLHQFKRLLSTHAIDTILQF 414


>gb|KYP49547.1| Retrotransposable element Tf2 [Cajanus cajan]
          Length = 998

 Score =  433 bits (1113), Expect = e-137
 Identities = 237/494 (47%), Positives = 300/494 (60%), Gaps = 7/494 (1%)
 Frame = -2

Query: 1475 HPLSSTSIKLDIPRFNGTDALGWIFKINQFFDFHLTPEDQRLRIASFYMEGEALGWFQWM 1296
            +P + +++KLD+PRF+ T+ + WIFKI Q FD+H TPE+QRLR+ SF +EGEAL WFQW+
Sbjct: 140  YPFTRSTMKLDLPRFDRTEPVSWIFKIKQLFDYHQTPEEQRLRMVSFALEGEALTWFQWV 199

Query: 1295 HSNGQLLSWHQFIHALEVRFAPSQYEDPQGALFKLCQTTTVADYQASFEALANRIVGLQP 1116
            H+N  + +W  F+ ALEVRFA S YEDP+GALFKLCQT+TV +YQ  FE LANRIVGL P
Sbjct: 200  HANN-MTTWEAFLQALEVRFALSHYEDPKGALFKLCQTSTVREYQNQFETLANRIVGLPP 258

Query: 1115 QFYLSCFVSGLKPSIRREVLAFQPTTLTQAINLAKLQEDKIRDRSSSFXXXXXXXXXXXX 936
             F+LSCFVSGLKP IR+EV AFQP +L+QAI+LAKLQE+K  D S++             
Sbjct: 259  PFFLSCFVSGLKPKIRQEVQAFQPISLSQAISLAKLQEEKFADASTTI------------ 306

Query: 935  XXXXXXXXXXXXXXALXXXXXXXXXXXXXPKPVTP------IKRLTPT*LQARRDKGLCY 774
                           L               P  P      IKRLTP  LQ+ RDK LCY
Sbjct: 307  ---------RSNRSVLPTTKTTSFLNPYSSVPKNPNTNLPLIKRLTPAELQSCRDKNLCY 357

Query: 773  NCDELYYNGHRCRRQFHLLITE-XXXXXXXXXXXXXIXXXXXXXXXXXXTNDSQPAQISL 597
             CDE Y  GH+C+R+F LLI E              +              D+   QISL
Sbjct: 358  YCDERYRPGHKCKREFMLLIAEPDNSEQLAEDLTHCLQLDAPSQNDPPDPPDTHSTQISL 417

Query: 596  HALMGHAIPQTLRVLGYIGKQPVSILIDSGSTHNFIQDRIIKQLNIQCKPTENFEVLVGN 417
            HAL+GH+IPQ L+VLG+I       L+DSGSTHNFIQD I K L  Q      F VLVGN
Sbjct: 418  HALLGHSIPQALKVLGHI-----HFLVDSGSTHNFIQDCIAKHLGPQVDSARGFHVLVGN 472

Query: 416  GEELHCSKMCHQLHLNIGSHDFSVDFYVLPISGAELVLGIQWLRTLGPILTDYDNLTMEF 237
            GEEL CS +C Q+ L +GSH F VD +VLP+SG+ELVLG+QWL TLGP+LTDY+ LTM+F
Sbjct: 473  GEELLCSIVCKQVPLKLGSHTFLVDLFVLPLSGSELVLGVQWLTTLGPVLTDYEKLTMKF 532

Query: 236  TVNGQLVHLHGNTKPPPLEASLHQLQRMMHTHSVDTVIQFYLLDQQXXXXXXXXXXXXXX 57
               G++V L    +  P EA++HQL+RM+ T  +  + Q +L+                 
Sbjct: 533  IKEGKMVELKVEQRTAPQEATMHQLKRMISTDGIAKLFQLHLIS-----PTETPIRSQTV 587

Query: 56   PEIANLLTKFTSIF 15
             E+  LL K+  IF
Sbjct: 588  SEVEELLDKYPQIF 601


>dbj|GAU35511.1| hypothetical protein TSUD_155420 [Trifolium subterraneum]
          Length = 738

 Score =  420 bits (1079), Expect = e-135
 Identities = 235/515 (45%), Positives = 292/515 (56%), Gaps = 1/515 (0%)
 Frame = -2

Query: 1556 LSTEMTQLRTRLPPPGFGPFSAEQRLTHP-LSSTSIKLDIPRFNGTDALGWIFKINQFFD 1380
            L++E    R++ PPP F P         P +S+T++KLDIPRF G DA+GWIFKINQFFD
Sbjct: 146  LTSEFHDFRSQFPPPRFPPPIPTTGPDIPQISATTMKLDIPRFTGDDAMGWIFKINQFFD 205

Query: 1379 FHLTPEDQRLRIASFYMEGEALGWFQWMHSNGQLLSWHQFIHALEVRFAPSQYEDPQGAL 1200
                                                                Y  P+GAL
Sbjct: 206  ----------------------------------------------------YHHPKGAL 213

Query: 1199 FKLCQTTTVADYQASFEALANRIVGLQPQFYLSCFVSGLKPSIRREVLAFQPTTLTQAIN 1020
            FKLCQTT+V +YQ+ FE LANRIVGL P FYLSCF+SGLKP IRREV AFQP +LTQAI+
Sbjct: 214  FKLCQTTSVREYQSQFETLANRIVGLPPPFYLSCFISGLKPHIRREVQAFQPISLTQAIH 273

Query: 1019 LAKLQEDKIRDRSSSFXXXXXXXXXXXXXXXXXXXXXXXXXXALXXXXXXXXXXXXXPKP 840
            LA+LQE+K  DR                                              KP
Sbjct: 274  LARLQEEKFADRPP------------------VKSIHPSTTVGSSTTSSKPTMTVAPSKP 315

Query: 839  VTPIKRLTPT*LQARRDKGLCYNCDELYYNGHRCRRQFHLLITEXXXXXXXXXXXXXIXX 660
             TPIKRLTP  LQARRDKGLCYNCDE +   HRC+RQFHLLI E                
Sbjct: 316  HTPIKRLTPDELQARRDKGLCYNCDERFQPDHRCKRQFHLLIVEPENSVSSEVASTFQAL 375

Query: 659  XXXXXXXXXXTNDSQPAQISLHALMGHAIPQTLRVLGYIGKQPVSILIDSGSTHNFIQDR 480
                       N   PAQISLHALMGH IPQTLRV+G I + P++IL+DSGSTHN +QDR
Sbjct: 376  QGDDPIEHGLPNPD-PAQISLHALMGHTIPQTLRVMGQINQSPIAILVDSGSTHNILQDR 434

Query: 479  IIKQLNIQCKPTENFEVLVGNGEELHCSKMCHQLHLNIGSHDFSVDFYVLPISGAELVLG 300
            + KQL +   P  +F+VLVGNGE LHC+ MC Q+ L +G H+F +D +VLP+SGAELVLG
Sbjct: 435  VAKQLGLPTTPAHSFKVLVGNGELLHCTSMCSQVSLFLGQHEFILDLFVLPLSGAELVLG 494

Query: 299  IQWLRTLGPILTDYDNLTMEFTVNGQLVHLHGNTKPPPLEASLHQLQRMMHTHSVDTVIQ 120
            +QWL+T GP++ DY+ LTM F+ +G+ V L G  KP P EA+LHQLQR++ TH++DT ++
Sbjct: 495  VQWLKTSGPVIIDYEKLTMSFSKDGETVQLVGVPKPSPEEANLHQLQRLVDTHAIDTCVR 554

Query: 119  FYLLDQQXXXXXXXXXXXXXXPEIANLLTKFTSIF 15
             +L+                 P +  L+TKF S+F
Sbjct: 555  LHLIS---TIPPDNTPTPIADPRVTALVTKFASLF 586


>ref|XP_014491240.1| uncharacterized protein LOC106753853 [Vigna radiata var. radiata]
          Length = 608

 Score =  406 bits (1044), Expect = e-131
 Identities = 213/453 (47%), Positives = 271/453 (59%), Gaps = 3/453 (0%)
 Frame = -2

Query: 1487 QRLTHPLSST---SIKLDIPRFNGTDALGWIFKINQFFDFHLTPEDQRLRIASFYMEGEA 1317
            Q  + P S+T    +KL++PRF+G DA GWIFKI QFF++H TPE+ RL++ASFYM+G A
Sbjct: 54   QSPSSPSSTTFKPHMKLEVPRFDGHDATGWIFKITQFFEYHSTPEEDRLKVASFYMDGAA 113

Query: 1316 LGWFQWMHSNGQLLSWHQFIHALEVRFAPSQYEDPQGALFKLCQTTTVADYQASFEALAN 1137
            L WFQW+H NG + SWH F+ ALE RFAPS YEDP+G LFKL Q++TV DY   FE LA+
Sbjct: 114  LSWFQWVHKNGLIPSWHSFLQALETRFAPSYYEDPRGLLFKLTQSSTVNDYLTEFERLAS 173

Query: 1136 RIVGLQPQFYLSCFVSGLKPSIRREVLAFQPTTLTQAINLAKLQEDKIRDRSSSFXXXXX 957
            R+VGL P F LSCF+ GL P I+REVLA QP T TQA  LAKLQEDK  D          
Sbjct: 174  RVVGLPPSFLLSCFILGLSPEIKREVLALQPLTFTQAAALAKLQEDKFHDLRKG------ 227

Query: 956  XXXXXXXXXXXXXXXXXXXXXALXXXXXXXXXXXXXPKPVTPIKRLTPT*LQARRDKGLC 777
                                 +L                 T  K+L+   + ARR+KGLC
Sbjct: 228  -------PRNRFPFQPSPISTSLSPPQGRSSSPLLPTPSKTNYKKLSHEEMLARREKGLC 280

Query: 776  YNCDELYYNGHRCRRQFHLLITEXXXXXXXXXXXXXIXXXXXXXXXXXXTNDSQPAQISL 597
            YNCDE ++ GH+C+ +F LL+ E                           N+   AQIS 
Sbjct: 281  YNCDEKFHPGHKCKARFFLLVAEETEVNNTTPSDDLAAPEPDPLLAHDIQNELSSAQISF 340

Query: 596  HALMGHAIPQTLRVLGYIGKQPVSILIDSGSTHNFIQDRIIKQLNIQCKPTENFEVLVGN 417
            +AL G   P+ LR LG I K+ V+IL+D GSTHNFIQDR+ K LN+  +PT   +V+VGN
Sbjct: 341  NALSGLTAPEALRFLGLISKKQVTILVDGGSTHNFIQDRVAKFLNLPLQPTPTLKVMVGN 400

Query: 416  GEELHCSKMCHQLHLNIGSHDFSVDFYVLPISGAELVLGIQWLRTLGPILTDYDNLTMEF 237
            G  + C + C  + L+I  H F+VDF+VLPISGA++VLGIQWL+TLGPI+TDY  LTM F
Sbjct: 401  GSVIECHQFCPAVLLSIQGHIFTVDFHVLPISGADVVLGIQWLKTLGPIVTDYSQLTMRF 460

Query: 236  TVNGQLVHLHGNTKPPPLEASLHQLQRMMHTHS 138
               G  V L   +   P   S  QL+R+  T+S
Sbjct: 461  DREGHTVELSATSPSGPQHISAPQLKRIFETNS 493


>ref|XP_014511566.1| uncharacterized protein LOC106770264 [Vigna radiata var. radiata]
          Length = 1093

 Score =  413 bits (1062), Expect = e-129
 Identities = 218/462 (47%), Positives = 273/462 (59%)
 Frame = -2

Query: 1523 LPPPGFGPFSAEQRLTHPLSSTSIKLDIPRFNGTDALGWIFKINQFFDFHLTPEDQRLRI 1344
            LPPP      +    T P     +KLD+PRF+G DA GWIFKINQFF++H TPE+ RL++
Sbjct: 52   LPPP------SPVNHTLPSFKPHMKLDVPRFDGCDATGWIFKINQFFEYHSTPEEDRLKV 105

Query: 1343 ASFYMEGEALGWFQWMHSNGQLLSWHQFIHALEVRFAPSQYEDPQGALFKLCQTTTVADY 1164
            ASFYMEG AL WFQWMH NG + SW  F+ ALE RFAPS YEDP+G LFKL Q  TV DY
Sbjct: 106  ASFYMEGTALSWFQWMHQNGLIQSWPAFLQALETRFAPSFYEDPRGLLFKLSQRGTVNDY 165

Query: 1163 QASFEALANRIVGLQPQFYLSCFVSGLKPSIRREVLAFQPTTLTQAINLAKLQEDKIRDR 984
               FE LA+R+VGL P F LSCF+SGL P I+REVLA QP T TQA  LAKLQEDK  D 
Sbjct: 166  LTEFERLASRVVGLPPSFLLSCFISGLSPEIKREVLALQPLTFTQAAALAKLQEDKFLDL 225

Query: 983  SSSFXXXXXXXXXXXXXXXXXXXXXXXXXXALXXXXXXXXXXXXXPKPVTPIKRLTPT*L 804
                                           L             P P T  K+LT   +
Sbjct: 226  RKGSRNRPFLSTPHLPGTSSTAPSSNQPLPPL-----------LTPPPKTNFKKLTHEEM 274

Query: 803  QARRDKGLCYNCDELYYNGHRCRRQFHLLITEXXXXXXXXXXXXXIXXXXXXXXXXXXTN 624
             +RR+KGLCYNCDE ++ GH+C+ +F LL+ E                            
Sbjct: 275  LSRREKGLCYNCDEKFHPGHKCKARFFLLVAETPDDDISSFSDPLSHTDLDSSQLESNCT 334

Query: 623  DSQPAQISLHALMGHAIPQTLRVLGYIGKQPVSILIDSGSTHNFIQDRIIKQLNIQCKPT 444
            +   AQIS +AL G   P+ LR++G I KQ V+IL+D GSTHNFIQDR+ K LN+  +PT
Sbjct: 335  ELSSAQISFNALSGLPAPEALRLMGLISKQQVTILVDGGSTHNFIQDRVAKFLNLPSQPT 394

Query: 443  ENFEVLVGNGEELHCSKMCHQLHLNIGSHDFSVDFYVLPISGAELVLGIQWLRTLGPILT 264
               +V+VGNG  L C  +C  + + I    F+VDF+VLPISGAE++LGIQWL+ LGPI+T
Sbjct: 395  PTLKVMVGNGSVLECHHVCPAILVTIQGQHFTVDFHVLPISGAEVILGIQWLKLLGPIIT 454

Query: 263  DYDNLTMEFTVNGQLVHLHGNTKPPPLEASLHQLQRMMHTHS 138
            DY  +T+ F   G+ V L  +    P + S HQL+R++ THS
Sbjct: 455  DYSKMTISFMQEGRRVELTADIPSGPQDISAHQLKRIVQTHS 496


>gb|KYP68937.1| Retrotransposon-derived protein PEG10 [Cajanus cajan]
          Length = 507

 Score =  390 bits (1001), Expect = e-126
 Identities = 206/474 (43%), Positives = 273/474 (57%), Gaps = 4/474 (0%)
 Frame = -2

Query: 1553 STEMTQLRTRLP----PPGFGPFSAEQRLTHPLSSTSIKLDIPRFNGTDALGWIFKINQF 1386
            S++MT ++ RL      P   P S       P     +KLD+PRF+G+D LGWIFKI QF
Sbjct: 25   SSQMTDMQHRLSNLESKPPSSPHSINAINNPPSPRHFLKLDVPRFDGSDPLGWIFKITQF 84

Query: 1385 FDFHLTPEDQRLRIASFYMEGEALGWFQWMHSNGQLLSWHQFIHALEVRFAPSQYEDPQG 1206
            FD+H TPE++R+ +ASFY++G AL WFQWM+ NGQ+ SW   + ALE RFAP+ ++DP+G
Sbjct: 85   FDYHNTPEEERITVASFYLDGAALAWFQWMYRNGQIHSWQHLLQALETRFAPTAFDDPRG 144

Query: 1205 ALFKLCQTTTVADYQASFEALANRIVGLQPQFYLSCFVSGLKPSIRREVLAFQPTTLTQA 1026
             LFKL QTTTV+ +   FEA+ANR+ GL PQF LSCF+ GLKP IRREV+A QP +LT A
Sbjct: 145  RLFKLTQTTTVSAFLTEFEAVANRVTGLSPQFLLSCFIFGLKPEIRREVIAQQPPSLTHA 204

Query: 1025 INLAKLQEDKIRDRSSSFXXXXXXXXXXXXXXXXXXXXXXXXXXALXXXXXXXXXXXXXP 846
            + LA+L E+K++D S                                            P
Sbjct: 205  VGLARLHEEKLQDLS----RIQRAKPGAPWSSPPFSRTFTPFAPPQTIAPKPLPPLLPSP 260

Query: 845  KPVTPIKRLTPT*LQARRDKGLCYNCDELYYNGHRCRRQFHLLITEXXXXXXXXXXXXXI 666
             P T  ++LT   +  RR+KGLC+NCD+ Y   HRC  +F LLI E              
Sbjct: 261  PPKTRFRQLTEAEMADRREKGLCFNCDQKYSRSHRCPARFLLLIAEDDDPPSAPDLDFPA 320

Query: 665  XXXXXXXXXXXXTNDSQPAQISLHALMGHAIPQTLRVLGYIGKQPVSILIDSGSTHNFIQ 486
                             PAQISLHAL G   P+TLR+ G I   P+ +L+D GSTHNFIQ
Sbjct: 321  ADPDPSLVDPSTVTSVHPAQISLHALSGTGAPKTLRLTGQIAHHPIRVLVDGGSTHNFIQ 380

Query: 485  DRIIKQLNIQCKPTENFEVLVGNGEELHCSKMCHQLHLNIGSHDFSVDFYVLPISGAELV 306
              +  QL +   PT   +VLVG+GEEL C  +C  + L+I  H F +D YVL + G+++V
Sbjct: 381  KNVALQLGLGQSPTSPLKVLVGSGEELACDTVCLAVALSIQGHSFQLDLYVLDMGGSDVV 440

Query: 305  LGIQWLRTLGPILTDYDNLTMEFTVNGQLVHLHGNTKPPPLEASLHQLQRMMHT 144
            LG QWL+ LGPIL DY  LTM+F  N  +V L G++       SLHQ +R+++T
Sbjct: 441  LGAQWLKQLGPILMDYQALTMKFVYNQVIVELKGDSGQSSSLLSLHQFKRVVNT 494


>dbj|GAU49705.1| hypothetical protein TSUD_182030 [Trifolium subterraneum]
          Length = 1414

 Score =  413 bits (1061), Expect = e-126
 Identities = 224/509 (44%), Positives = 295/509 (57%)
 Frame = -2

Query: 1529 TRLPPPGFGPFSAEQRLTHPLSSTSIKLDIPRFNGTDALGWIFKINQFFDFHLTPEDQRL 1350
            T  PPP   PF    R+         KLD+PRFNGTDALGWIFKINQFFD+H TPE +RL
Sbjct: 54   TSPPPPSPPPFPRPHRM---------KLDVPRFNGTDALGWIFKINQFFDYHDTPEAERL 104

Query: 1349 RIASFYMEGEALGWFQWMHSNGQLLSWHQFIHALEVRFAPSQYEDPQGALFKLCQTTTVA 1170
             +ASFYMEG ALGWFQWM +NGQL SW   ++ALE RFAPSQY DP+GALFKL Q +TV 
Sbjct: 105  TVASFYMEGPALGWFQWMSNNGQLTSWSALLYALEARFAPSQYNDPKGALFKLTQRSTVN 164

Query: 1169 DYQASFEALANRIVGLQPQFYLSCFVSGLKPSIRREVLAFQPTTLTQAINLAKLQEDKIR 990
            DY + FE LANRI GL P F LSCF+SGL   +RREV A QP TL QA  LA+LQE+K+ 
Sbjct: 165  DYLSEFETLANRITGLAPSFLLSCFISGLNSDVRREVQALQPLTLIQAAALARLQEEKLN 224

Query: 989  DRSSSFXXXXXXXXXXXXXXXXXXXXXXXXXXALXXXXXXXXXXXXXPKPVTPIKRLTPT 810
            D   +                                           KP+   KRL+PT
Sbjct: 225  DHRRAVRGKGILASTP------------------SPTKITPPLLQSSSKPI--FKRLSPT 264

Query: 809  *LQARRDKGLCYNCDELYYNGHRCRRQFHLLITEXXXXXXXXXXXXXIXXXXXXXXXXXX 630
             +  RR+KGLC+NCDE +  GH+C  +F ++I E             +            
Sbjct: 265  EMTLRREKGLCFNCDEKFSPGHKCASKFFIMIAEEDVASDESYGLEALLDPPQPDPEPDP 324

Query: 629  TNDSQPAQISLHALMGHAIPQTLRVLGYIGKQPVSILIDSGSTHNFIQDRIIKQLNIQCK 450
              D+  AQIS HAL GH  P+TLR++G I    + ILI+ GST NFIQ+R++K L +Q +
Sbjct: 325  --DTTQAQISFHALSGHLAPETLRLIGRIAAHNLVILINGGSTDNFIQERLVKSLGLQTQ 382

Query: 449  PTENFEVLVGNGEELHCSKMCHQLHLNIGSHDFSVDFYVLPISGAELVLGIQWLRTLGPI 270
            PT+   V+VGNG  + C ++C Q+ ++I +  F+VD +VLP+SGA++V G+QW+++LGPI
Sbjct: 383  PTQALRVMVGNGNIIECHQVCTQIPIHIQNQVFTVDLHVLPLSGADVVFGVQWMKSLGPI 442

Query: 269  LTDYDNLTMEFTVNGQLVHLHGNTKPPPLEASLHQLQRMMHTHSVDTVIQFYLLDQQXXX 90
            LTDY++LTM+F   G+++ L GN        S  Q++R+MHT          LL  +   
Sbjct: 443  LTDYNDLTMKFIQAGKIIELKGNYDSGLSLISAQQVKRLMHTDGASEFFHIQLLSPE--- 499

Query: 89   XXXXXXXXXXXPEIANLLTKFTSIFEPLT 3
                       P I  +L KF+ +F+  T
Sbjct: 500  ---FPSLQNPDPHIQPILQKFSKLFQKPT 525


>gb|PNX92970.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
          Length = 1483

 Score =  412 bits (1059), Expect = e-125
 Identities = 228/525 (43%), Positives = 298/525 (56%), Gaps = 6/525 (1%)
 Frame = -2

Query: 1559 ALSTEMTQLRTRLPPPGFG-----PFSAEQRLTHPLSSTSIKLDIPRFNGTDALGWIFKI 1395
            A+   +  L TR PPP        P    Q L H      +KLD+P+F+G+DA+GWIFKI
Sbjct: 18   AIIDTLATLTTRPPPPPTPTPTPTPTPPPQPLNHH-HLPRMKLDVPKFDGSDAMGWIFKI 76

Query: 1394 NQFFDFHLTPEDQRLRIASFYMEGEALGWFQWMHSNGQLLSWHQFIHALEVRFAPSQYED 1215
            +QFFD+H TPE++RL +ASFYMEG AL WFQWMH NGQ+ +W   + ALE RFAPS Y+D
Sbjct: 77   SQFFDYHQTPEEERLTVASFYMEGPALSWFQWMHRNGQITTWFGLLQALETRFAPSYYDD 136

Query: 1214 PQGALFKLCQTTTVADYQASFEALANRIVGLQPQFYLSCFVSGLKPSIRREVLAFQPTTL 1035
            P  +LFKL Q TTV +Y A FE LANRIVGLQP F LSCF+SGL P IRREV A +P +L
Sbjct: 137  PSSSLFKLTQRTTVNEYLAEFERLANRIVGLQPPFLLSCFISGLSPEIRREVQALRPMSL 196

Query: 1034 TQAINLAKLQEDKIRDRSSSFXXXXXXXXXXXXXXXXXXXXXXXXXXALXXXXXXXXXXX 855
            TQA  LAKLQEDKI DR   F                                       
Sbjct: 197  TQATALAKLQEDKIADRRRFFKNKPNSQQISSSSNPFGPPPSTP-----PLPTPNTLPLL 251

Query: 854  XXPKPVTP-IKRLTPT*LQARRDKGLCYNCDELYYNGHRCRRQFHLLITEXXXXXXXXXX 678
              PKP  P  ++L+P  + +RR+KGLCYNCDE +   H+CR +F LL+TE          
Sbjct: 252  PPPKPNRPNFRKLSPEEMASRREKGLCYNCDETFTPQHKCRGRFFLLVTEEPMESPPDLI 311

Query: 677  XXXIXXXXXXXXXXXXTNDSQPAQISLHALMGHAIPQTLRVLGYIGKQPVSILIDSGSTH 498
                              D   AQISLHAL G  +  T+R++G I   PV++LID GSTH
Sbjct: 312  DFTEPDPPNETTPTDAAID---AQISLHALSGCTVASTIRLMGCIANHPVTVLIDGGSTH 368

Query: 497  NFIQDRIIKQLNIQCKPTENFEVLVGNGEELHCSKMCHQLHLNIGSHDFSVDFYVLPISG 318
            NF+QDRI K L +   P  N +V+VGNG  L C++ C  + L + S  F VDFYVLP+ G
Sbjct: 369  NFVQDRIAKFLELPSIPISNLKVMVGNGNNLDCTRFCSDVPLMLQSKSFVVDFYVLPLCG 428

Query: 317  AELVLGIQWLRTLGPILTDYDNLTMEFTVNGQLVHLHGNTKPPPLEASLHQLQRMMHTHS 138
            A++VLG  WL+ +GP+L DY +L++ FT  GQ + L  + +  P   S  Q++R++ T+S
Sbjct: 429  ADIVLGAPWLKNIGPVLMDYSSLSLSFTHQGQPITLTADPQAQPKPVSAQQVKRLLQTNS 488

Query: 137  VDTVIQFYLLDQQXXXXXXXXXXXXXXPEIANLLTKFTSIFEPLT 3
               +    +L+                P I +LL +F++IF   T
Sbjct: 489  TAELFHIQILNPTPDPPTIEPPQPHPIPSIQSLLLRFSTIFNSPT 533


>gb|PNX92353.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 1502

 Score =  410 bits (1053), Expect = e-124
 Identities = 218/483 (45%), Positives = 289/483 (59%), Gaps = 1/483 (0%)
 Frame = -2

Query: 1454 IKLDIPRFNGTDALGWIFKINQFFDFHLTPEDQRLRIASFYMEGEALGWFQWMHSNGQLL 1275
            +KLD+PRF+G+DA+GWIFKI+QFF+FH TPE  RL IASFYMEG ALGW+QWM  NGQL 
Sbjct: 74   MKLDVPRFDGSDAMGWIFKISQFFEFHATPEADRLTIASFYMEGPALGWYQWMARNGQLT 133

Query: 1274 SWHQFIHALEVRFAPSQYEDPQGALFKLCQTTTVADYQASFEALANRIVGLQPQFYLSCF 1095
            SWH  ++A+E RFAPSQY+DP+G+LFKL Q  +V++Y ++FE LANRIVGLQP F LSCF
Sbjct: 134  SWHGLLNAIEARFAPSQYDDPKGSLFKLTQKGSVSEYLSAFETLANRIVGLQPPFLLSCF 193

Query: 1094 VSGLKPSIRREVLAFQPTTLTQAINLAKLQEDKIRDRSSSFXXXXXXXXXXXXXXXXXXX 915
            +SGL P IRREV+A QP  L QA +LA+LQE+K  D   +                    
Sbjct: 194  ISGLIPEIRREVMALQPLNLIQAASLARLQEEKFNDARRALRNRGILNPTPLQQIPPS-- 251

Query: 914  XXXXXXXALXXXXXXXXXXXXXPKPVTP-IKRLTPT*LQARRDKGLCYNCDELYYNGHRC 738
                                  PKP  P  KRL+PT +  RR+KGLC+NCDE +  GH+C
Sbjct: 252  ---------STSRTPLALLPPPPKPSPPTFKRLSPTEMAQRREKGLCFNCDEKFRPGHKC 302

Query: 737  RRQFHLLITEXXXXXXXXXXXXXIXXXXXXXXXXXXTNDSQPAQISLHALMGHAIPQTLR 558
              +F +LIT+                            +   AQIS HAL GH  P+TLR
Sbjct: 303  SSRFFILITDDDIDPDLTHIDPNSAAQPDPEPDL----EPSQAQISFHALSGHLAPETLR 358

Query: 557  VLGYIGKQPVSILIDSGSTHNFIQDRIIKQLNIQCKPTENFEVLVGNGEELHCSKMCHQL 378
            + G I  Q V IL+D GSTHNF+Q+R++K L ++ +PT    V+VGNG  L C+++C  +
Sbjct: 359  LAGRIAHQRVHILMDGGSTHNFLQERLVKSLGLKVQPTAGLRVMVGNGTLLDCNQICPGV 418

Query: 377  HLNIGSHDFSVDFYVLPISGAELVLGIQWLRTLGPILTDYDNLTMEFTVNGQLVHLHGNT 198
             L+I  H F VD ++LPISGA+LVLG+QW+++LGPIL DY+ LTM+F   G  + L G  
Sbjct: 419  TLHIQGHTFVVDLHILPISGADLVLGVQWMKSLGPILVDYNALTMQFKHAGATIRLQGER 478

Query: 197  KPPPLEASLHQLQRMMHTHSVDTVIQFYLLDQQXXXXXXXXXXXXXXPEIANLLTKFTSI 18
                   S HQ++R++HT S+ +     +L  +              P I  LL +F  +
Sbjct: 479  DGGLHMISAHQVERLIHTDSISSFFHVQMLPVE------LPSNQKEPPPITELLQQFNHL 532

Query: 17   FEP 9
            F P
Sbjct: 533  FTP 535