BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus22_contig00005615
         (1276 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KHN21230.1| Retrovirus-related Pol polyprotein from transposo...   542   e-177
gb|KYP62479.1| Retrovirus-related Pol polyprotein from transposo...   379   e-127
gb|PNX78102.1| retrovirus-related Pol polyprotein from transposo...   381   e-125
gb|PNX77046.1| retrovirus-related Pol polyprotein from transposo...   379   e-124
gb|PNY12955.1| retrovirus-related Pol polyprotein from transposo...   378   e-123
gb|PNX84939.1| retrovirus-related Pol polyprotein from transposo...   375   e-123
gb|KYP50410.1| Retrovirus-related Pol polyprotein from transposo...   373   e-121
gb|KYP70746.1| Retrovirus-related Pol polyprotein from transposo...   364   e-121
gb|KYP46114.1| Retrovirus-related Pol polyprotein from transposo...   368   e-119
gb|PNX93258.1| histone deacetylase, partial [Trifolium pratense]      387   e-119
gb|PNX76161.1| retrovirus-related Pol polyprotein from transposo...   363   e-119
gb|PNY02741.1| retrovirus-related Pol polyprotein from transposo...   379   e-118
gb|PNX99662.1| retrovirus-related Pol polyprotein from transposo...   377   e-117
dbj|GAU19342.1| hypothetical protein TSUD_336290 [Trifolium subt...   383   e-117
gb|PNX93473.1| retrovirus-related Pol polyprotein from transposo...   379   e-117
gb|PNX95703.1| retrovirus-related Pol polyprotein from transposo...   374   e-117
gb|PNX93512.1| histone deacetylase, partial [Trifolium pratense]      382   e-117
gb|KYP48058.1| Retrovirus-related Pol polyprotein from transposo...   361   e-117
gb|PNX92906.1| retrovirus-related Pol polyprotein from transposo...   378   e-117
gb|KYP47850.1| Retrovirus-related Pol polyprotein from transposo...   352   e-116

>gb|KHN21230.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1429

 Score =  542 bits (1397), Expect = e-177
 Identities = 278/429 (64%), Positives = 308/429 (71%), Gaps = 5/429 (1%)
 Frame = +3

Query: 3    KDVLFNEKHFPCQVPKPVPGPSTNTVPATIPLEVVXXXXXXXXXXXXXXXXXXXXXXXXX 182
            KDVLFNEKHFP Q+  P       TV +  PL VV                         
Sbjct: 784  KDVLFNEKHFPYQITPPTTCSPNQTVTSAAPLGVVNHIPQQTPHTPNNLTPNNQPTPHTP 843

Query: 183  XXXPTPPSN-----NLSPAPIEPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLTR 347
               P+  S+     + SP P  P+                                MLTR
Sbjct: 844  TTFPSHTSSPYISASASPTPTLPSTASSTIDPNSTPTSSPSPTTNTHH--------MLTR 895

Query: 348  SKTGHLKPPLYPSISFTTTEPTNVHQALSSPHWAEAMQHEFKALQTNNTWTLVTLPPNKR 527
            SKTGHLKPPL+P+I+ TTTEPT V QALSS HW EAMQ E++ALQ N TW+LV LPP+KR
Sbjct: 896  SKTGHLKPPLFPTINLTTTEPTTVQQALSSIHWTEAMQQEYQALQANKTWSLVPLPPHKR 955

Query: 528  AIGCKWIFRIKENPDGSINKYKARLVAKGFHQKYGQDYSDTFSPVVKPITIRIVLTLALT 707
            AIGCKWIFRIKENPDG+INKYKARLVAKGF+QKYGQDYSDT+SPVVKPIT+R VLT+ALT
Sbjct: 956  AIGCKWIFRIKENPDGTINKYKARLVAKGFNQKYGQDYSDTYSPVVKPITVRTVLTIALT 1015

Query: 708  SKWPIIQLDVNNAFLNGHLQEDVYMQQPQGFVQGDSSLVCKLNKAIYGLKQAPRAWYESL 887
            SKWP+IQLDVNNAFLNG L EDVYMQQPQGF+QG+S+LVCKL+KAIYGLKQAPRAWYESL
Sbjct: 1016 SKWPLIQLDVNNAFLNGQLHEDVYMQQPQGFIQGESTLVCKLHKAIYGLKQAPRAWYESL 1075

Query: 888  TKTLTSFGFQQSRCDPSLLTFNNRGCCXXXXXXXXXXXXTGSSNTAINLITTKLNSAFSL 1067
            T TL SFGFQQS+CDPSLL FN  GCC            TGSSNTAINLI  KLN+ FSL
Sbjct: 1076 TNTLISFGFQQSKCDPSLLIFNKHGCCLLILIYVDDIIITGSSNTAINLIVNKLNATFSL 1135

Query: 1068 KQLGTLDYFLGIECKHTATGALHLSQAKYIRDILHRAGMEDCKGITTPLPANLKLSKTGT 1247
            KQLGTL+YFLGIECK T +GALHLSQAKYIRDILHRAGMEDCKGI+TPLPANLKLSKTG 
Sbjct: 1136 KQLGTLEYFLGIECKLTPSGALHLSQAKYIRDILHRAGMEDCKGISTPLPANLKLSKTGA 1195

Query: 1248 DVFEDPTLY 1274
            D F++PTLY
Sbjct: 1196 DPFDNPTLY 1204


>gb|KYP62479.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 293

 Score =  379 bits (973), Expect = e-127
 Identities = 182/292 (62%), Positives = 221/292 (75%)
 Frame = +3

Query: 336  MLTRSKTGHLKPPLYPSISFTTTEPTNVHQALSSPHWAEAMQHEFKALQTNNTWTLVTLP 515
            M TRSK+G ++P L+P++  TTTEPT++ QALSSP W  AM  E+ AL  N TWTLV LP
Sbjct: 1    MQTRSKSGIVRPKLHPTLLLTTTEPTSLKQALSSPSWKTAMSLEYDALIKNQTWTLVPLP 60

Query: 516  PNKRAIGCKWIFRIKENPDGSINKYKARLVAKGFHQKYGQDYSDTFSPVVKPITIRIVLT 695
             N+  +GCKW++RIKEN DG+INKYKARLVAKGFHQK+G DYS+TFSPV+KPITIR++LT
Sbjct: 61   SNRTVVGCKWVYRIKENQDGTINKYKARLVAKGFHQKFGCDYSETFSPVIKPITIRVILT 120

Query: 696  LALTSKWPIIQLDVNNAFLNGHLQEDVYMQQPQGFVQGDSSLVCKLNKAIYGLKQAPRAW 875
            L +T  WPI Q+D+NNAFLNG L+EDVYM QP GF   D +LVCKLNKAIYGLKQAPRAW
Sbjct: 121  LDVTYHWPIKQVDINNAFLNGFLEEDVYMMQPPGFEVSDKTLVCKLNKAIYGLKQAPRAW 180

Query: 876  YESLTKTLTSFGFQQSRCDPSLLTFNNRGCCXXXXXXXXXXXXTGSSNTAINLITTKLNS 1055
            Y+ LTKTL  FGF QSRCDPSLL +     C            TG+S++ +    +KLN 
Sbjct: 181  YDRLTKTLLGFGFVQSRCDPSLLIYKQSQVCIYMLIYVDDIIVTGNSHSLVQSFISKLNG 240

Query: 1056 AFSLKQLGTLDYFLGIECKHTATGALHLSQAKYIRDILHRAGMEDCKGITTP 1211
             F+LKQLG LDYFLGIE K T +G++ L+QAKYIRD+L R  M + KGI+TP
Sbjct: 241  VFALKQLGDLDYFLGIEVKRTNSGSVILNQAKYIRDLLQRTDMYNAKGISTP 292


>gb|PNX78102.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 535

 Score =  381 bits (979), Expect = e-125
 Identities = 183/313 (58%), Positives = 234/313 (74%)
 Frame = +3

Query: 336  MLTRSKTGHLKPPLYPSISFTTTEPTNVHQALSSPHWAEAMQHEFKALQTNNTWTLVTLP 515
            M+TR+KTG+LKP  + +    +  PTNV  AL+ PHW +AMQ E+KAL  N TW+LV LP
Sbjct: 1    MITRTKTGNLKPKTFTA----SIAPTNVKSALAEPHWLQAMQAEYKALMDNKTWSLVPLP 56

Query: 516  PNKRAIGCKWIFRIKENPDGSINKYKARLVAKGFHQKYGQDYSDTFSPVVKPITIRIVLT 695
            P+++AIGCKWIFR+KENPDGSINKYKARLVAKGF Q  G D+++TFSPV+KP+TIRI+LT
Sbjct: 57   PHRKAIGCKWIFRVKENPDGSINKYKARLVAKGFLQTPGFDFTETFSPVIKPVTIRIILT 116

Query: 696  LALTSKWPIIQLDVNNAFLNGHLQEDVYMQQPQGFVQGDSSLVCKLNKAIYGLKQAPRAW 875
            LA+T KW + Q+D+NNAFLNG LQE+VYM QP GF   D +LVCKL+KA+YGLKQAPRAW
Sbjct: 117  LAVTYKWSVQQIDINNAFLNGILQEEVYMTQPPGFESSDKNLVCKLHKALYGLKQAPRAW 176

Query: 876  YESLTKTLTSFGFQQSRCDPSLLTFNNRGCCXXXXXXXXXXXXTGSSNTAINLITTKLNS 1055
            Y+ LT+TL   GF +SRCDPSLL  +  G C            TGS+   I  +  KLN 
Sbjct: 177  YDRLTQTLLQMGFTKSRCDPSLLVHHQNGACTYVLVYVDDILITGSAPHLIKDLIHKLNI 236

Query: 1056 AFSLKQLGTLDYFLGIECKHTATGALHLSQAKYIRDILHRAGMEDCKGITTPLPANLKLS 1235
             F+LKQLG +DYFLG+E  H+ +G++ L Q+KYI+D+L +  ME+CK I +P+ ++ KLS
Sbjct: 237  KFALKQLGEVDYFLGLEVHHSTSGSILLHQSKYIKDLLCKTKMENCKPIGSPMVSSCKLS 296

Query: 1236 KTGTDVFEDPTLY 1274
            K GTD  EDP+LY
Sbjct: 297  KFGTDTMEDPSLY 309


>gb|PNX77046.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 515

 Score =  379 bits (974), Expect = e-124
 Identities = 185/313 (59%), Positives = 231/313 (73%)
 Frame = +3

Query: 336  MLTRSKTGHLKPPLYPSISFTTTEPTNVHQALSSPHWAEAMQHEFKALQTNNTWTLVTLP 515
            M+TR+KTGHLKP  + +I     EPT V  AL+ P W +AMQ EFKAL  NNTW+LV LP
Sbjct: 74   MITRAKTGHLKPKAFTTIF----EPTTVKSALADPQWLQAMQTEFKALTDNNTWSLVPLP 129

Query: 516  PNKRAIGCKWIFRIKENPDGSINKYKARLVAKGFHQKYGQDYSDTFSPVVKPITIRIVLT 695
            P+K+AIGCKWIFRIKENPDG+INKYKARLVAKGF Q  G D+++TFSPV+KP+TIRI+LT
Sbjct: 130  PHKKAIGCKWIFRIKENPDGTINKYKARLVAKGFLQTPGFDFTETFSPVIKPVTIRIILT 189

Query: 696  LALTSKWPIIQLDVNNAFLNGHLQEDVYMQQPQGFVQGDSSLVCKLNKAIYGLKQAPRAW 875
            LA+T KWP+ Q+D+NNAFLNG L E+VYM QP GF   D SLVCKL+K++YGLKQAPRAW
Sbjct: 190  LAVTYKWPVQQIDINNAFLNGILHEEVYMTQPTGFESSDKSLVCKLHKSLYGLKQAPRAW 249

Query: 876  YESLTKTLTSFGFQQSRCDPSLLTFNNRGCCXXXXXXXXXXXXTGSSNTAINLITTKLNS 1055
            YE LT+TL   GF  S+CDPSL+  + +G C            TGS+   I  +  KLN 
Sbjct: 250  YERLTQTLLQMGFIASKCDPSLMVLHQQGACTYVLIYVDDILITGSAPHLIQDVIQKLNF 309

Query: 1056 AFSLKQLGTLDYFLGIECKHTATGALHLSQAKYIRDILHRAGMEDCKGITTPLPANLKLS 1235
              +LKQLG +DYFLGIE   TA+G L L+Q+KYIRD+L +  M++CK I +P+  + +LS
Sbjct: 310  KLALKQLGEVDYFLGIEVHKTASGGLILNQSKYIRDLLCKTTMDNCKPIGSPMVNSCRLS 369

Query: 1236 KTGTDVFEDPTLY 1274
            + GTD   DP+LY
Sbjct: 370  RFGTDAMSDPSLY 382


>gb|PNY12955.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 535

 Score =  378 bits (970), Expect = e-123
 Identities = 183/313 (58%), Positives = 231/313 (73%)
 Frame = +3

Query: 336  MLTRSKTGHLKPPLYPSISFTTTEPTNVHQALSSPHWAEAMQHEFKALQTNNTWTLVTLP 515
            M+TR KTG+LKP ++      + EPT +  AL+ P W  AMQ+E+KAL  NNTW+LV LP
Sbjct: 1    MVTRGKTGNLKPKVFT----VSLEPTTIKAALTDPKWLHAMQNEYKALMDNNTWSLVPLP 56

Query: 516  PNKRAIGCKWIFRIKENPDGSINKYKARLVAKGFHQKYGQDYSDTFSPVVKPITIRIVLT 695
            P+K+AIGCKWIFR+KEN DG++NK+KARLVAKGF Q  G D+++TFSPV+KPITIR++LT
Sbjct: 57   PHKKAIGCKWIFRVKENSDGTVNKFKARLVAKGFLQTPGFDFTETFSPVIKPITIRVILT 116

Query: 696  LALTSKWPIIQLDVNNAFLNGHLQEDVYMQQPQGFVQGDSSLVCKLNKAIYGLKQAPRAW 875
            LA+T KWP+ Q+DVNNAFLNG LQE+VYM+QP GF   D SLVCKL+K++YGLKQAPRAW
Sbjct: 117  LAVTYKWPVQQIDVNNAFLNGWLQEEVYMKQPAGFESSDKSLVCKLHKSLYGLKQAPRAW 176

Query: 876  YESLTKTLTSFGFQQSRCDPSLLTFNNRGCCXXXXXXXXXXXXTGSSNTAINLITTKLNS 1055
            YE LT+ L   GF  S+CDPSLL    +G C            TGS+   I  +  KLNS
Sbjct: 177  YERLTQALLQMGFVTSKCDPSLLIHYQQGACTYVLIYVDDILITGSAPHLIKDLIHKLNS 236

Query: 1056 AFSLKQLGTLDYFLGIECKHTATGALHLSQAKYIRDILHRAGMEDCKGITTPLPANLKLS 1235
             F+LKQLG +DYFLGIE  H  +G L L+Q+KYIRD+L R  ME+CK I +P+ ++ +LS
Sbjct: 237  QFALKQLGEVDYFLGIEVHHMPSGGLLLNQSKYIRDLLCRTNMENCKPIGSPMVSSCRLS 296

Query: 1236 KTGTDVFEDPTLY 1274
            K GTD   DP+LY
Sbjct: 297  KFGTDAMSDPSLY 309


>gb|PNX84939.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 499

 Score =  375 bits (964), Expect = e-123
 Identities = 184/313 (58%), Positives = 230/313 (73%)
 Frame = +3

Query: 336  MLTRSKTGHLKPPLYPSISFTTTEPTNVHQALSSPHWAEAMQHEFKALQTNNTWTLVTLP 515
            M+TR+KTGHLK   + +I     EPT V  AL+ P W +AMQ EFKAL  NNTW+LV LP
Sbjct: 58   MITRAKTGHLKLKAFTTIF----EPTTVKSALADPQWLQAMQTEFKALTDNNTWSLVPLP 113

Query: 516  PNKRAIGCKWIFRIKENPDGSINKYKARLVAKGFHQKYGQDYSDTFSPVVKPITIRIVLT 695
            P+K+AIGCKWIFRIKENPDG+INKYKARLVAKGF Q  G D+++TFSPV+KP+TIRI+LT
Sbjct: 114  PHKKAIGCKWIFRIKENPDGTINKYKARLVAKGFLQTPGFDFTETFSPVIKPVTIRIILT 173

Query: 696  LALTSKWPIIQLDVNNAFLNGHLQEDVYMQQPQGFVQGDSSLVCKLNKAIYGLKQAPRAW 875
            LA+T KWP+ Q+D+NNAFLNG L E+VYM QP GF   D SLVCKL+K++YGLKQAPRAW
Sbjct: 174  LAVTYKWPVQQIDINNAFLNGILHEEVYMTQPTGFESSDKSLVCKLHKSLYGLKQAPRAW 233

Query: 876  YESLTKTLTSFGFQQSRCDPSLLTFNNRGCCXXXXXXXXXXXXTGSSNTAINLITTKLNS 1055
            YE LT+TL   GF  S+CDPSL+  + +G C            TGS+   I  +  KLN 
Sbjct: 234  YERLTQTLLQMGFIASKCDPSLMVLHQQGACTYVLIYVDDILITGSAPHLIQDVIQKLNF 293

Query: 1056 AFSLKQLGTLDYFLGIECKHTATGALHLSQAKYIRDILHRAGMEDCKGITTPLPANLKLS 1235
              +LKQLG +DYFLGIE   TA+G L L+Q+KYIRD+L +  M++CK I +P+  + +LS
Sbjct: 294  KLALKQLGEVDYFLGIEVHKTASGGLILNQSKYIRDLLCKTTMDNCKPIGSPMVNSCRLS 353

Query: 1236 KTGTDVFEDPTLY 1274
            + GTD   DP+LY
Sbjct: 354  RFGTDAMSDPSLY 366


>gb|KYP50410.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 538

 Score =  373 bits (957), Expect = e-121
 Identities = 181/313 (57%), Positives = 229/313 (73%)
 Frame = +3

Query: 336  MLTRSKTGHLKPPLYPSISFTTTEPTNVHQALSSPHWAEAMQHEFKALQTNNTWTLVTLP 515
            M TR+K G +KP L P++  T  EP N  QAL+S  W  AM+ E+ AL  N TWTLV+LP
Sbjct: 1    MTTRAKAGIVKPRLQPTLLLTHIEPKNTKQALASDTWLAAMKQEYNALLNNGTWTLVSLP 60

Query: 516  PNKRAIGCKWIFRIKENPDGSINKYKARLVAKGFHQKYGQDYSDTFSPVVKPITIRIVLT 695
            PNK AIGCKW+FRIKEN DG++NKYKARLVAKGFHQ++G DY++TFSPVVKP+TIR++LT
Sbjct: 61   PNKTAIGCKWVFRIKENSDGTVNKYKARLVAKGFHQQFGSDYNETFSPVVKPVTIRLILT 120

Query: 696  LALTSKWPIIQLDVNNAFLNGHLQEDVYMQQPQGFVQGDSSLVCKLNKAIYGLKQAPRAW 875
            LALT  W I QLDVNNAFLNG+LQE+VYM QP GF   D +LVCKL+KAIYGLKQAPRAW
Sbjct: 121  LALTHHWSIQQLDVNNAFLNGNLQEEVYMSQPPGFESSDKTLVCKLHKAIYGLKQAPRAW 180

Query: 876  YESLTKTLTSFGFQQSRCDPSLLTFNNRGCCXXXXXXXXXXXXTGSSNTAINLITTKLNS 1055
            ++ L  TL    FQ S+CDPSL  +++                TG++++ +  I  +LNS
Sbjct: 181  FDKLKTTLFQLNFQISKCDPSLFVYSHDNNVIYILVYVDDIIITGNNSSTLQNIIAQLNS 240

Query: 1056 AFSLKQLGTLDYFLGIECKHTATGALHLSQAKYIRDILHRAGMEDCKGITTPLPANLKLS 1235
            AFSLK LG LD+FLGIE K    G+L L+Q+KYIRD+L+R  ME+   I++P+ +  KLS
Sbjct: 241  AFSLKDLGRLDFFLGIEVKSNTDGSLTLTQSKYIRDLLNRTNMENSNPISSPMVSGCKLS 300

Query: 1236 KTGTDVFEDPTLY 1274
            +TG++ F D TLY
Sbjct: 301  RTGSEKFLDVTLY 313


>gb|KYP70746.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 324

 Score =  364 bits (935), Expect = e-121
 Identities = 178/315 (56%), Positives = 227/315 (72%), Gaps = 2/315 (0%)
 Frame = +3

Query: 336  MLTRSKTGHLKPPLYPSISFTTTEPTNVHQALSSPHWAEAMQHEFKALQTNNTWTLVTLP 515
            M TRSK+G   P ++PS+    +EP  V QAL+ P+W  AMQ E+ AL  N+TW LV+LP
Sbjct: 1    MQTRSKSGFHNPRIHPSLFLAHSEPKTVKQALADPNWFSAMQQEYNALMLNHTWDLVSLP 60

Query: 516  PNKRAIGCKWIFRIKENPDGSINKYKARLVAKGFHQKYGQDYSDTFSPVVKPITIRIVLT 695
             +++A+GCKW+FR+KEN DGSI+K KARLVAKGFHQ +G D+ +TFSPV+KPITIRI+LT
Sbjct: 61   SDRKAVGCKWVFRVKENADGSIDKLKARLVAKGFHQVHGFDFHETFSPVIKPITIRIILT 120

Query: 696  LALTSKWPIIQLDVNNAFLNGHLQEDVYMQQPQGFVQGDSSLVCKLNKAIYGLKQA--PR 869
            LALT+ W + QLDVNNAFLNG L+E +YM QP GF  GD SLVCKLNKA+YGLKQA  PR
Sbjct: 121  LALTNNWNLFQLDVNNAFLNGTLEETIYMVQPPGFEAGDKSLVCKLNKALYGLKQAPPPR 180

Query: 870  AWYESLTKTLTSFGFQQSRCDPSLLTFNNRGCCXXXXXXXXXXXXTGSSNTAINLITTKL 1049
             W+  L  TLT FGFQ S+CDPSL  + ++               TGSS+  I  IT +L
Sbjct: 181  QWFNKLKLTLTRFGFQASKCDPSLFQYQHQTHTIFILVYVDDIIITGSSSLLIQQITNQL 240

Query: 1050 NSAFSLKQLGTLDYFLGIECKHTATGALHLSQAKYIRDILHRAGMEDCKGITTPLPANLK 1229
            +S FSLKQLG+LDYFLGIE KH    +L L+Q+KYIRD+L +  + +  G  +P+ +N K
Sbjct: 241  DSIFSLKQLGSLDYFLGIEVKHLPDKSLVLTQSKYIRDLLFKTNLAEAHGAPSPMFSNCK 300

Query: 1230 LSKTGTDVFEDPTLY 1274
            LS++G D F DPTL+
Sbjct: 301  LSRSGNDFFHDPTLF 315


>gb|KYP46114.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 539

 Score =  368 bits (944), Expect = e-119
 Identities = 177/313 (56%), Positives = 226/313 (72%)
 Frame = +3

Query: 336  MLTRSKTGHLKPPLYPSISFTTTEPTNVHQALSSPHWAEAMQHEFKALQTNNTWTLVTLP 515
            M TRSK+G   P ++PS+    +EP  V QAL+ P+W  AMQ E+ AL  N+TW LV+LP
Sbjct: 1    MQTRSKSGFHNPRIHPSLFLAHSEPKTVKQALADPNWFSAMQQEYNALMLNHTWDLVSLP 60

Query: 516  PNKRAIGCKWIFRIKENPDGSINKYKARLVAKGFHQKYGQDYSDTFSPVVKPITIRIVLT 695
             +++A+GCKW+FR+KEN DGSI+K KARLVAKGFHQ +G D+ +TFSPV+KPITIRI+LT
Sbjct: 61   SDRKAVGCKWVFRVKENADGSIDKLKARLVAKGFHQVHGFDFHETFSPVIKPITIRIILT 120

Query: 696  LALTSKWPIIQLDVNNAFLNGHLQEDVYMQQPQGFVQGDSSLVCKLNKAIYGLKQAPRAW 875
            LALT+ W + QLDVNNAFLNG L+E +YM QP GF  GD SLVCKLNKA+YGLKQAPR W
Sbjct: 121  LALTNNWNLFQLDVNNAFLNGTLEETIYMVQPPGFEAGDKSLVCKLNKALYGLKQAPRQW 180

Query: 876  YESLTKTLTSFGFQQSRCDPSLLTFNNRGCCXXXXXXXXXXXXTGSSNTAINLITTKLNS 1055
            +  L  TLT FGFQ S+CDPSL  + ++               TGSS+  I  IT +L+S
Sbjct: 181  FNKLKLTLTRFGFQASKCDPSLFQYQHQTHTIFILVYVDDIIITGSSSLLIQQITNQLDS 240

Query: 1056 AFSLKQLGTLDYFLGIECKHTATGALHLSQAKYIRDILHRAGMEDCKGITTPLPANLKLS 1235
             FSLKQLG+LDYFLGIE KH    +L L+Q+KYIRD+L +  + +  G  +P+ +N KLS
Sbjct: 241  IFSLKQLGSLDYFLGIEVKHLPDKSLVLTQSKYIRDLLFKTNLAEAHGAPSPMFSNCKLS 300

Query: 1236 KTGTDVFEDPTLY 1274
            ++G D F DPT +
Sbjct: 301  RSGNDFFHDPTFF 313


>gb|PNX93258.1| histone deacetylase, partial [Trifolium pratense]
          Length = 1438

 Score =  387 bits (994), Expect = e-119
 Identities = 187/313 (59%), Positives = 233/313 (74%)
 Frame = +3

Query: 336  MLTRSKTGHLKPPLYPSISFTTTEPTNVHQALSSPHWAEAMQHEFKALQTNNTWTLVTLP 515
            M+TR KTG+LKP  +     TT EPT V  ALS+P W +AMQ E KAL  NNTW+LV LP
Sbjct: 914  MVTRGKTGNLKPKTF----ITTLEPTTVKSALSNPRWLQAMQSELKALTDNNTWSLVPLP 969

Query: 516  PNKRAIGCKWIFRIKENPDGSINKYKARLVAKGFHQKYGQDYSDTFSPVVKPITIRIVLT 695
            P+KRAIGCKW+FR+KENPDG+INKYKARLVAKGF Q  G D+++TFSPVVKP+T+RI+LT
Sbjct: 970  PHKRAIGCKWVFRVKENPDGTINKYKARLVAKGFLQTPGFDFTETFSPVVKPVTVRIILT 1029

Query: 696  LALTSKWPIIQLDVNNAFLNGHLQEDVYMQQPQGFVQGDSSLVCKLNKAIYGLKQAPRAW 875
            LA+T KW + Q+D+NNAFLNG LQE+VYM QP GF   D SLVCKL+K++YGLKQAPRAW
Sbjct: 1030 LAVTYKWSVKQIDINNAFLNGLLQEEVYMTQPTGFESSDKSLVCKLHKSLYGLKQAPRAW 1089

Query: 876  YESLTKTLTSFGFQQSRCDPSLLTFNNRGCCXXXXXXXXXXXXTGSSNTAINLITTKLNS 1055
            YE LT+TL   GF  S+CDPSLL  + +G C            TGSS+  I  +  KLN 
Sbjct: 1090 YERLTQTLVQMGFSASKCDPSLLVHHQQGACTYVLIYVDDILITGSSSQLIEDLIHKLNI 1149

Query: 1056 AFSLKQLGTLDYFLGIECKHTATGALHLSQAKYIRDILHRAGMEDCKGITTPLPANLKLS 1235
             F+LKQLG +DYFLGIE  H ++GAL L+Q+KYI+D+L +  M++CK I +P+ +  +LS
Sbjct: 1150 QFALKQLGEIDYFLGIEVHHMSSGALLLNQSKYIKDLLVKTNMDNCKPIGSPMVSTCRLS 1209

Query: 1236 KTGTDVFEDPTLY 1274
            K GTD   DP+LY
Sbjct: 1210 KFGTDALSDPSLY 1222


>gb|PNX76161.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 459

 Score =  363 bits (932), Expect = e-119
 Identities = 177/296 (59%), Positives = 220/296 (74%), Gaps = 1/296 (0%)
 Frame = +3

Query: 390  SFTTT-EPTNVHQALSSPHWAEAMQHEFKALQTNNTWTLVTLPPNKRAIGCKWIFRIKEN 566
            +FTT  EPT V  AL+ P W +AMQ EFKAL  NNTW+LV LPP+K+AIGCKWIFRIKEN
Sbjct: 2    AFTTIFEPTTVKSALADPQWLQAMQTEFKALTDNNTWSLVPLPPHKKAIGCKWIFRIKEN 61

Query: 567  PDGSINKYKARLVAKGFHQKYGQDYSDTFSPVVKPITIRIVLTLALTSKWPIIQLDVNNA 746
            PDG+INKYKARLVAKGF Q  G D+++TFSPV+KP+TIRI+LTLA+T KWP+ Q+D+NNA
Sbjct: 62   PDGTINKYKARLVAKGFLQTPGFDFTETFSPVIKPVTIRIILTLAVTYKWPVQQIDINNA 121

Query: 747  FLNGHLQEDVYMQQPQGFVQGDSSLVCKLNKAIYGLKQAPRAWYESLTKTLTSFGFQQSR 926
            FLNG L E+VYM QP GF   D SLVCKL+K++YGLKQAPRAWYE LT+TL   GF  S+
Sbjct: 122  FLNGILHEEVYMTQPTGFESSDKSLVCKLHKSLYGLKQAPRAWYERLTQTLLQMGFIASK 181

Query: 927  CDPSLLTFNNRGCCXXXXXXXXXXXXTGSSNTAINLITTKLNSAFSLKQLGTLDYFLGIE 1106
            CDPSL+  + +G C            TGS+   I  +  KLN   +LKQLG +DYFLGIE
Sbjct: 182  CDPSLMVLHQQGACTYVLIYVDDILITGSAPHLIQDVIQKLNFKLALKQLGEVDYFLGIE 241

Query: 1107 CKHTATGALHLSQAKYIRDILHRAGMEDCKGITTPLPANLKLSKTGTDVFEDPTLY 1274
               TA+G L L+Q+KYIRD+L +  M++CK I +P+  + +LS+ GTD   DP+LY
Sbjct: 242  VHKTASGGLILNQSKYIRDLLCKTTMDNCKPIGSPMVNSCRLSRFGTDAMSDPSLY 297


>gb|PNY02741.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 1054

 Score =  379 bits (973), Expect = e-118
 Identities = 182/313 (58%), Positives = 234/313 (74%)
 Frame = +3

Query: 336  MLTRSKTGHLKPPLYPSISFTTTEPTNVHQALSSPHWAEAMQHEFKALQTNNTWTLVTLP 515
            M+TR KTG+LKP ++ + S    EP+NV QAL+ P W  AM+ E+ AL  N TW+LV LP
Sbjct: 630  MVTRGKTGNLKPKVFLAHS----EPSNVKQALADPQWLTAMKAEYSALMNNQTWSLVPLP 685

Query: 516  PNKRAIGCKWIFRIKENPDGSINKYKARLVAKGFHQKYGQDYSDTFSPVVKPITIRIVLT 695
             ++RAIGCKW+FRIKENPDGS+NKYKARLVAKG+ Q+ G DY++TFSPVVKP+TIRI+LT
Sbjct: 686  AHRRAIGCKWVFRIKENPDGSVNKYKARLVAKGYSQEQGFDYNETFSPVVKPVTIRIILT 745

Query: 696  LALTSKWPIIQLDVNNAFLNGHLQEDVYMQQPQGFVQGDSSLVCKLNKAIYGLKQAPRAW 875
            LA++ KW I Q+D+NNAFLNG LQE+VYM QP GF+  DSSLVC+L++A+YGLKQAPRAW
Sbjct: 746  LAISFKWDIQQIDINNAFLNGILQEEVYMTQPPGFISSDSSLVCRLHRALYGLKQAPRAW 805

Query: 876  YESLTKTLTSFGFQQSRCDPSLLTFNNRGCCXXXXXXXXXXXXTGSSNTAINLITTKLNS 1055
            YE LT+ L  FGFQ S+CDPSL  + ++G              TGSS++ +  + +KLNS
Sbjct: 806  YERLTQALVRFGFQPSKCDPSLFVYTHKGITLYVLVYVDDILLTGSSSSLLQDLISKLNS 865

Query: 1056 AFSLKQLGTLDYFLGIECKHTATGALHLSQAKYIRDILHRAGMEDCKGITTPLPANLKLS 1235
             F+LK +G  DYFLGIE  H   G + L+Q+KYIRD+LHRA M + KGI TP+ ++LKLS
Sbjct: 866  QFALKHMGRPDYFLGIEVHHLPNGNMLLTQSKYIRDLLHRANMAEAKGINTPMVSSLKLS 925

Query: 1236 KTGTDVFEDPTLY 1274
            + G+D   DP  Y
Sbjct: 926  RFGSDSLPDPHEY 938


>gb|PNX99662.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 1046

 Score =  377 bits (967), Expect = e-117
 Identities = 184/313 (58%), Positives = 232/313 (74%)
 Frame = +3

Query: 336  MLTRSKTGHLKPPLYPSISFTTTEPTNVHQALSSPHWAEAMQHEFKALQTNNTWTLVTLP 515
            M+TR KTG+LKP ++ + S    EP  V QAL+ P W  AM+ E+ AL  N TW+LV LP
Sbjct: 515  MVTRGKTGNLKPKVFLAHS----EPGTVKQALADPQWLAAMKCEYSALMKNETWSLVPLP 570

Query: 516  PNKRAIGCKWIFRIKENPDGSINKYKARLVAKGFHQKYGQDYSDTFSPVVKPITIRIVLT 695
             ++RAIGCKW+FRIKENPDGS+NKYKARLVAKGF Q++G DY++TFSPVVKP+TIRI+LT
Sbjct: 571  AHRRAIGCKWVFRIKENPDGSVNKYKARLVAKGFSQEHGFDYTETFSPVVKPVTIRIILT 630

Query: 696  LALTSKWPIIQLDVNNAFLNGHLQEDVYMQQPQGFVQGDSSLVCKLNKAIYGLKQAPRAW 875
            LA++ KW I Q+DVNNAFLNG L E+VYM QP GFV  D +LVCKL+KA+YGLKQAPRAW
Sbjct: 631  LAISFKWDIQQIDVNNAFLNGILHEEVYMVQPPGFVSTDKTLVCKLHKALYGLKQAPRAW 690

Query: 876  YESLTKTLTSFGFQQSRCDPSLLTFNNRGCCXXXXXXXXXXXXTGSSNTAINLITTKLNS 1055
            YE LT+ L  FGF  S+CDPSL  +N++               TGSS+  ++ +  KLNS
Sbjct: 691  YERLTQALLHFGFHASKCDPSLFVYNHKDVTLYVLVYVDDILLTGSSSALLHDLILKLNS 750

Query: 1056 AFSLKQLGTLDYFLGIECKHTATGALHLSQAKYIRDILHRAGMEDCKGITTPLPANLKLS 1235
             F+LK +G  DYFLGIE KH   G++ L+Q+KYIRD+LHRA M + KGI+TP+ ++LKLS
Sbjct: 751  QFALKHMGKPDYFLGIEVKHLHNGSILLTQSKYIRDLLHRANMAEAKGISTPMVSSLKLS 810

Query: 1236 KTGTDVFEDPTLY 1274
            + GTD   DP  Y
Sbjct: 811  RFGTDTLPDPHEY 823


>dbj|GAU19342.1| hypothetical protein TSUD_336290 [Trifolium subterraneum]
          Length = 1442

 Score =  383 bits (984), Expect = e-117
 Identities = 191/313 (61%), Positives = 234/313 (74%)
 Frame = +3

Query: 336  MLTRSKTGHLKPPLYPSISFTTTEPTNVHQALSSPHWAEAMQHEFKALQTNNTWTLVTLP 515
            M+TR+KTG+LKP  Y S++    EP  V  ALS P W  AMQ E+KAL  NNTW+LV LP
Sbjct: 910  MITRAKTGNLKPKAYLSLA----EPKTVKSALSDPQWLAAMQLEYKALMDNNTWSLVPLP 965

Query: 516  PNKRAIGCKWIFRIKENPDGSINKYKARLVAKGFHQKYGQDYSDTFSPVVKPITIRIVLT 695
            P++RAIGCKW+FRIKENPDG++NKYKARLVAKGF Q  G D+++TFSPV+KPITIRI+LT
Sbjct: 966  PHRRAIGCKWVFRIKENPDGTVNKYKARLVAKGFAQTPGFDFTETFSPVIKPITIRIILT 1025

Query: 696  LALTSKWPIIQLDVNNAFLNGHLQEDVYMQQPQGFVQGDSSLVCKLNKAIYGLKQAPRAW 875
            LA+T+KWP+ Q+DVNNAFLNG LQE+VYM QP GF   D SLVCKL+K++YGLKQAPRAW
Sbjct: 1026 LAVTNKWPVQQIDVNNAFLNGVLQEEVYMHQPAGFENADRSLVCKLHKSLYGLKQAPRAW 1085

Query: 876  YESLTKTLTSFGFQQSRCDPSLLTFNNRGCCXXXXXXXXXXXXTGSSNTAINLITTKLNS 1055
            YE LT+TL +FGF +S+CDPSLL  ++ G              TGS+   I  +  KLN 
Sbjct: 1086 YEKLTQTLLTFGFVKSKCDPSLLVHSHNGAVTYVLIYVDDILITGSAPHVIQDLIHKLNV 1145

Query: 1056 AFSLKQLGTLDYFLGIECKHTATGALHLSQAKYIRDILHRAGMEDCKGITTPLPANLKLS 1235
             F+LKQLG LDYFLGIE    +TGAL L+Q KYIRD+L +A ME+   I +P+ +  +LS
Sbjct: 1146 HFALKQLGQLDYFLGIEVHSLSTGALLLTQTKYIRDLLCKAKMENSNPIGSPMVSTCRLS 1205

Query: 1236 KTGTDVFEDPTLY 1274
            K GTDVF D TLY
Sbjct: 1206 KIGTDVFSDATLY 1218


>gb|PNX93473.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1181

 Score =  379 bits (973), Expect = e-117
 Identities = 205/426 (48%), Positives = 255/426 (59%), Gaps = 2/426 (0%)
 Frame = +3

Query: 3    KDVLFNEKHFPCQVPKPVPGPSTNTVPATIPLEVVXXXXXXXXXXXXXXXXXXXXXXXXX 182
            KDVLFNE  FP  +  PV   S+  +P  IP ++                          
Sbjct: 537  KDVLFNETRFPYNLLFPVSATSS-LIPDPIP-DIPISKLPIDSHNQTILPTLTNHSHQSQ 594

Query: 183  XXXPTPPS--NNLSPAPIEPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLTRSKT 356
                T PS  + LS A   P                                 M TR+K+
Sbjct: 595  NDDTTHPSVSDALSSAQPSPTNNIVPPDITIHHLTEIPVNNSVSPTKLTNTHAMQTRAKS 654

Query: 357  GHLKPPLYPSISFTTTEPTNVHQALSSPHWAEAMQHEFKALQTNNTWTLVTLPPNKRAIG 536
            G ++P   P +  T++EP  V QAL  P W  AM+ EF ALQ N TWTLV LPPN++AIG
Sbjct: 655  GIVRPKQNPKLLLTSSEPKTVKQALKDPQWYTAMKEEFDALQRNQTWTLVKLPPNRKAIG 714

Query: 537  CKWIFRIKENPDGSINKYKARLVAKGFHQKYGQDYSDTFSPVVKPITIRIVLTLALTSKW 716
            CKW+FR KENPDGSINK KARLVAKGFHQ +G D+++TFSPV+KPITIR++L LA++ KW
Sbjct: 715  CKWVFRTKENPDGSINKLKARLVAKGFHQLHGFDFNETFSPVIKPITIRLILALAISYKW 774

Query: 717  PIIQLDVNNAFLNGHLQEDVYMQQPQGFVQGDSSLVCKLNKAIYGLKQAPRAWYESLTKT 896
            P+ QLD+NNAFLNG L E+VYM QPQGF   DSSLVCKL KA+YGLKQAPR W++ L  T
Sbjct: 775  PLKQLDINNAFLNGSLDEEVYMVQPQGFETTDSSLVCKLQKALYGLKQAPRQWFDKLATT 834

Query: 897  LTSFGFQQSRCDPSLLTFNNRGCCXXXXXXXXXXXXTGSSNTAINLITTKLNSAFSLKQL 1076
            L  FGF+ S+CDPSL  +++                TGSS T +  + TKL+S FSLKQL
Sbjct: 835  LIQFGFKASKCDPSLFIYSHNRQVVYLLVYVDDIIITGSSLTLVQHLVTKLDSVFSLKQL 894

Query: 1077 GTLDYFLGIECKHTATGALHLSQAKYIRDILHRAGMEDCKGITTPLPANLKLSKTGTDVF 1256
            G LDYFLGIE KH   G+L L+Q+KYI+D+L +  M D   I TP+ ++ KLSK G+D  
Sbjct: 895  GNLDYFLGIEVKHLTDGSLLLTQSKYIKDLLVKTNMIDSNPIATPMMSSCKLSKVGSDNV 954

Query: 1257 EDPTLY 1274
             DPTLY
Sbjct: 955  ADPTLY 960


>gb|PNX95703.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 975

 Score =  374 bits (961), Expect = e-117
 Identities = 186/313 (59%), Positives = 226/313 (72%)
 Frame = +3

Query: 336  MLTRSKTGHLKPPLYPSISFTTTEPTNVHQALSSPHWAEAMQHEFKALQTNNTWTLVTLP 515
            M TRSK+G   P  +P++  T +EP +V QAL  P W  AMQ EF ALQ NNTW+LV LP
Sbjct: 441  MQTRSKSGIFLPK-HPTVLLTHSEPKSVKQALQDPKWLTAMQSEFDALQQNNTWSLVPLP 499

Query: 516  PNKRAIGCKWIFRIKENPDGSINKYKARLVAKGFHQKYGQDYSDTFSPVVKPITIRIVLT 695
             N++AIGCKWIFRIKENPDGSINKYKARLVAKGFHQ  G D+++TFS VVKP+TIR++LT
Sbjct: 500  ANRKAIGCKWIFRIKENPDGSINKYKARLVAKGFHQLQGFDFTETFSLVVKPLTIRLILT 559

Query: 696  LALTSKWPIIQLDVNNAFLNGHLQEDVYMQQPQGFVQGDSSLVCKLNKAIYGLKQAPRAW 875
            LA++ KW + QLDVNNAFLNG L+E+VYM+QPQGF   + S+VCKLNKA+YGLKQAPR W
Sbjct: 560  LAISYKWSLQQLDVNNAFLNGVLEEEVYMEQPQGFENSNPSMVCKLNKALYGLKQAPRQW 619

Query: 876  YESLTKTLTSFGFQQSRCDPSLLTFNNRGCCXXXXXXXXXXXXTGSSNTAINLITTKLNS 1055
            ++ LT TL  FGFQ S+CDPSL   N                 TGSS+  +  +  KLNS
Sbjct: 620  FDKLTTTLVRFGFQTSKCDPSLFILNKDNHIVYLLVYVDDIIITGSSSQLVTSLVHKLNS 679

Query: 1056 AFSLKQLGTLDYFLGIECKHTATGALHLSQAKYIRDILHRAGMEDCKGITTPLPANLKLS 1235
             FSLKQLG LDYFLGIE KH     L L+Q+KYIRD+L +  M +   I+TP+ +  KLS
Sbjct: 680  VFSLKQLGLLDYFLGIEVKHLPNSTLLLTQSKYIRDLLTKTNMLESNPISTPMMSTCKLS 739

Query: 1236 KTGTDVFEDPTLY 1274
            K G+D F DP+LY
Sbjct: 740  KVGSDKFHDPSLY 752


>gb|PNX93512.1| histone deacetylase, partial [Trifolium pratense]
          Length = 1418

 Score =  382 bits (982), Expect = e-117
 Identities = 181/313 (57%), Positives = 232/313 (74%)
 Frame = +3

Query: 336  MLTRSKTGHLKPPLYPSISFTTTEPTNVHQALSSPHWAEAMQHEFKALQTNNTWTLVTLP 515
            M+TR KTGHLKP  + +    + EPT +  AL+SP W +AM+ E+KAL  NNTW+LV LP
Sbjct: 899  MITRGKTGHLKPKTFTA----SIEPTTIKSALASPQWLQAMKSEYKALMDNNTWSLVPLP 954

Query: 516  PNKRAIGCKWIFRIKENPDGSINKYKARLVAKGFHQKYGQDYSDTFSPVVKPITIRIVLT 695
            P+K+AIGCKWIFR+KENPDGS+NKYKARLVAKGF Q  G D+++TFSPV+KP+T+RI+LT
Sbjct: 955  PHKKAIGCKWIFRVKENPDGSVNKYKARLVAKGFLQTPGFDFTETFSPVIKPVTVRIILT 1014

Query: 696  LALTSKWPIIQLDVNNAFLNGHLQEDVYMQQPQGFVQGDSSLVCKLNKAIYGLKQAPRAW 875
            LA+T +W + Q+D+NNAFLNG LQE+VYM QP GF   D +LVCKL+K++YGLKQAPRAW
Sbjct: 1015 LAVTYRWSVQQIDINNAFLNGLLQEEVYMSQPAGFEASDKTLVCKLHKSLYGLKQAPRAW 1074

Query: 876  YESLTKTLTSFGFQQSRCDPSLLTFNNRGCCXXXXXXXXXXXXTGSSNTAINLITTKLNS 1055
            YE LT+TL   GF +S+CDPSLL  +  G C            TGS +  +  +  KLN 
Sbjct: 1075 YERLTQTLLQMGFVKSKCDPSLLVHHQHGACTYVLVYVDDILITGSDSQLVKDLIHKLNI 1134

Query: 1056 AFSLKQLGTLDYFLGIECKHTATGALHLSQAKYIRDILHRAGMEDCKGITTPLPANLKLS 1235
             F+LKQLG +DYFLGIE  H  +G L L Q+KY++D+L +  ME+CK I +P+ ++ KLS
Sbjct: 1135 KFALKQLGEVDYFLGIEVHHKPSGGLLLHQSKYVKDLLVKTNMENCKPIGSPMVSSCKLS 1194

Query: 1236 KTGTDVFEDPTLY 1274
            K GTDV  DPTLY
Sbjct: 1195 KFGTDVMTDPTLY 1207


>gb|KYP48058.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 539

 Score =  361 bits (927), Expect = e-117
 Identities = 178/313 (56%), Positives = 224/313 (71%)
 Frame = +3

Query: 336  MLTRSKTGHLKPPLYPSISFTTTEPTNVHQALSSPHWAEAMQHEFKALQTNNTWTLVTLP 515
            M TRSK+G  KP  YPS+    +EP NV QAL  P W EAM+ E+ AL  NNTWTLV LP
Sbjct: 1    MQTRSKSGIHKPK-YPSVLLAQSEPKNVKQALKDPKWLEAMKQEYSALLKNNTWTLVQLP 59

Query: 516  PNKRAIGCKWIFRIKENPDGSINKYKARLVAKGFHQKYGQDYSDTFSPVVKPITIRIVLT 695
            P++ AIGCKW+FRIKEN DGS+N+YKARLVAKGF Q+ G D+++TFSP++KP+TIR++LT
Sbjct: 60   PDRNAIGCKWVFRIKENSDGSVNRYKARLVAKGFLQQPGFDFNETFSPIIKPVTIRLILT 119

Query: 696  LALTSKWPIIQLDVNNAFLNGHLQEDVYMQQPQGFVQGDSSLVCKLNKAIYGLKQAPRAW 875
            LA+++ W I QLDVNNAFLNG L E VYMQQP GF   DS+LVCKLNKA+YGLKQAPR W
Sbjct: 120  LAISNHWDIHQLDVNNAFLNGSLNETVYMQQPPGFEVPDSTLVCKLNKALYGLKQAPRQW 179

Query: 876  YESLTKTLTSFGFQQSRCDPSLLTFNNRGCCXXXXXXXXXXXXTGSSNTAINLITTKLNS 1055
            +E L  TL  FGF+ S+CDPSL T++ +               TG+S      +  +LNS
Sbjct: 180  FERLQYTLLQFGFKASKCDPSLFTYHMQSNIVYLLVYVDDIIITGNSFQFTQQLIDQLNS 239

Query: 1056 AFSLKQLGTLDYFLGIECKHTATGALHLSQAKYIRDILHRAGMEDCKGITTPLPANLKLS 1235
             FSLKQLG LDYFLGIE +H   G++ L+Q+KYIRD+L R  M +   I++P+ ++ KLS
Sbjct: 240  IFSLKQLGKLDYFLGIEVRHLQNGSVLLTQSKYIRDLLQRTNMLEANAISSPMVSSCKLS 299

Query: 1236 KTGTDVFEDPTLY 1274
            K G+D   D T Y
Sbjct: 300  KHGSDTLADSTFY 312


>gb|PNX92906.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1196

 Score =  378 bits (970), Expect = e-117
 Identities = 185/313 (59%), Positives = 231/313 (73%)
 Frame = +3

Query: 336  MLTRSKTGHLKPPLYPSISFTTTEPTNVHQALSSPHWAEAMQHEFKALQTNNTWTLVTLP 515
            M+TR KTG+LKP +  +    + EPT+V  AL+ P W +AMQ E+KAL  NNTW+LV+LP
Sbjct: 664  MVTRGKTGNLKPKVLTA----SIEPTSVRAALNDPQWLKAMQSEYKALMDNNTWSLVSLP 719

Query: 516  PNKRAIGCKWIFRIKENPDGSINKYKARLVAKGFHQKYGQDYSDTFSPVVKPITIRIVLT 695
            P+K+AIGCKWIFR+KENPDG++NKYKARLVAKGF Q  G D+ +TFSPV+KP TIRI+LT
Sbjct: 720  PHKKAIGCKWIFRVKENPDGTVNKYKARLVAKGFLQTPGFDFKETFSPVIKPTTIRIILT 779

Query: 696  LALTSKWPIIQLDVNNAFLNGHLQEDVYMQQPQGFVQGDSSLVCKLNKAIYGLKQAPRAW 875
            LA+T KW + Q+DVNNAFLNG LQE+VYM QP GF   D SLVCKL+K++YGLKQAPRAW
Sbjct: 780  LAVTYKWAVQQIDVNNAFLNGLLQEEVYMSQPSGFEVADKSLVCKLHKSLYGLKQAPRAW 839

Query: 876  YESLTKTLTSFGFQQSRCDPSLLTFNNRGCCXXXXXXXXXXXXTGSSNTAINLITTKLNS 1055
            YE LT+TL   GF  S+CDPSLL  + +G C            TGS+   I  +  KLN 
Sbjct: 840  YERLTQTLLQMGFVASKCDPSLLIHHQQGACTYVLIYVDDILITGSAPHLIQDLIHKLNI 899

Query: 1056 AFSLKQLGTLDYFLGIECKHTATGALHLSQAKYIRDILHRAGMEDCKGITTPLPANLKLS 1235
             FSLKQLG +DYFLGIE  H  +G L L+Q+KYI+D+L R  ME+CK I +P+ ++ +LS
Sbjct: 900  QFSLKQLGEVDYFLGIEVHHMPSGGLLLNQSKYIKDLLSRTKMENCKAIGSPMVSSCRLS 959

Query: 1236 KTGTDVFEDPTLY 1274
            K GTD   DP+LY
Sbjct: 960  KFGTDSMSDPSLY 972


>gb|KYP47850.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 343

 Score =  352 bits (903), Expect = e-116
 Identities = 171/313 (54%), Positives = 226/313 (72%)
 Frame = +3

Query: 336  MLTRSKTGHLKPPLYPSISFTTTEPTNVHQALSSPHWAEAMQHEFKALQTNNTWTLVTLP 515
            M TR+K G +KP L+P++  T TEP +  QAL++  W  AM+ E+ AL  N TWTLV+LP
Sbjct: 1    MTTRAKVGIVKPRLHPTLLLTHTEPKSTKQALANDTWLAAMKQEYNALLNNGTWTLVSLP 60

Query: 516  PNKRAIGCKWIFRIKENPDGSINKYKARLVAKGFHQKYGQDYSDTFSPVVKPITIRIVLT 695
            PN+  IGCKW+FR+KENPDG+++KYKARLVAKGFHQ++     +TFSPVVKP+TIR++LT
Sbjct: 61   PNRTTIGCKWVFRVKENPDGAVHKYKARLVAKGFHQQF-----ETFSPVVKPVTIRLILT 115

Query: 696  LALTSKWPIIQLDVNNAFLNGHLQEDVYMQQPQGFVQGDSSLVCKLNKAIYGLKQAPRAW 875
            LALT  W I QLDVNNAFLNG+L+E+VYM QP  F   D +LVCKL+KAIYGLKQAPRAW
Sbjct: 116  LALTHHWSIQQLDVNNAFLNGNLEEEVYMSQPPSFESSDKALVCKLHKAIYGLKQAPRAW 175

Query: 876  YESLTKTLTSFGFQQSRCDPSLLTFNNRGCCXXXXXXXXXXXXTGSSNTAINLITTKLNS 1055
            ++ L  TL    FQ S+CDPSL  ++                 TG++++ ++ I ++LNS
Sbjct: 176  FDKLKATLFQLSFQISKCDPSLFVYSLGNNVIYILVYVDDIIITGNNSSVLHSIISQLNS 235

Query: 1056 AFSLKQLGTLDYFLGIECKHTATGALHLSQAKYIRDILHRAGMEDCKGITTPLPANLKLS 1235
             FSLK LG LD+FLGIE K    G+L L+Q+KYIRD+L+R  ME+   I++P+ +  KLS
Sbjct: 236  TFSLKDLGRLDFFLGIEVKSNPDGSLTLTQSKYIRDLLNRTNMENSNSISSPMVSGCKLS 295

Query: 1236 KTGTDVFEDPTLY 1274
            KTG++ F D +LY
Sbjct: 296  KTGSEKFLDVSLY 308