BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus22_contig00004346
         (1019 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|GAU46467.1| hypothetical protein TSUD_402340 [Trifolium subt...   209   6e-62
gb|PNX66369.1| ribonuclease H, partial [Trifolium pratense]           205   4e-61
gb|PNY06182.1| ribonuclease H [Trifolium pratense]                    214   3e-60
gb|PNX79929.1| ribonuclease H, partial [Trifolium pratense]           212   3e-59
gb|PNX81608.1| ribonuclease H [Trifolium pratense]                    206   1e-57
gb|PNX94788.1| ribonuclease H [Trifolium pratense]                    201   1e-56
dbj|GAU43502.1| hypothetical protein TSUD_398950 [Trifolium subt...   206   7e-56
gb|PNX97917.1| ribonuclease H [Trifolium pratense]                    201   3e-55
dbj|GAU19541.1| hypothetical protein TSUD_303540 [Trifolium subt...   198   1e-54
dbj|GAU13938.1| hypothetical protein TSUD_262650 [Trifolium subt...   199   8e-54
gb|PNY17666.1| ribonuclease H [Trifolium pratense]                    198   1e-53
dbj|GAU31120.1| hypothetical protein TSUD_212270 [Trifolium subt...   188   2e-53
gb|PNY12420.1| ribonuclease H [Trifolium pratense]                    196   3e-52
gb|PNX81975.1| ribonuclease H, partial [Trifolium pratense]           182   3e-52
dbj|GAU38338.1| hypothetical protein TSUD_61990 [Trifolium subte...   194   5e-52
gb|PNY00696.1| ribonuclease H [Trifolium pratense]                    181   2e-51
dbj|BAE71259.1| hypothetical protein [Trifolium pratense]             188   2e-51
dbj|GAU31911.1| hypothetical protein TSUD_270960 [Trifolium subt...   191   8e-51
gb|PNY15602.1| ribonuclease H [Trifolium pratense]                    181   7e-50
dbj|GAU10071.1| hypothetical protein TSUD_422240 [Trifolium subt...   177   9e-50

>dbj|GAU46467.1| hypothetical protein TSUD_402340 [Trifolium subterraneum]
          Length = 299

 Score =  209 bits (531), Expect = 6e-62
 Identities = 111/291 (38%), Positives = 165/291 (56%), Gaps = 1/291 (0%)
 Frame = +3

Query: 129 TNIHLFLTCRQYWHAKQLYISLWNSFIPPEVRSDFYGVELLDWLNGNMLNSTKLEVVLQW 308
           T++H+   C     AK++    W   +P  VRS F+G +L  W + N+         + W
Sbjct: 17  TSLHVLRDCDV---AKEI----WMVVVPRSVRSAFFGGDLSHWFSINLDGELVGINDINW 69

Query: 309 CNVWATGCYYLWYWRNKYVHEEGYSPPNCPSRIITQNAMNYESSKHLSVVHERTNQVT-M 485
              WAT CY+LW WRN+  H+  ++ P  P ++I Q    Y+ +   S V     ++  M
Sbjct: 70  PEFWATVCYFLWNWRNREYHDNSFTRPVQPVQVIMQRCREYKLAARASRVVTSVPRINVM 129

Query: 486 VHWRPAATGWTVINTDGAFKSTSNVAGCGAVVRNSDGFWIGGIARRLFVDSAYLAELWGV 665
           + W P + GW  +NTDGA K+   VAGCG ++RN+ G WIGG A+ +   SA++AELWGV
Sbjct: 130 IGWEPPSQGWVKLNTDGARKN-ERVAGCGGIIRNNIGDWIGGFAKHVGSCSAFVAELWGV 188

Query: 666 IDGINLAASKGYTDIELQLDSSIVVNCLTGTNMGSIAGRQLVRRIRHLLACFSNVRILHI 845
           ++G+N A   G+  +EL++DS+IVV+ +      S  G  L+R IR ++A   NV++ H 
Sbjct: 189 LEGLNYAWKLGFKKVELEIDSAIVVDAVNSGETNSAMGIALIRSIRRIIALNWNVKVYHS 248

Query: 846 YREANKVADALANLGCTFLEGFSIIDTPPPSISLLVDADVVGVSTPRVIPV 998
           YRE+N  ADA ANLGC   E     DT    I  L+ AD+ G +T R+IP+
Sbjct: 249 YRESNLCADAFANLGCALDENIVFFDTCSSQIRNLLFADISGHTTLRLIPM 299


>gb|PNX66369.1| ribonuclease H, partial [Trifolium pratense]
          Length = 252

 Score =  205 bits (521), Expect = 4e-61
 Identities = 105/249 (42%), Positives = 148/249 (59%), Gaps = 1/249 (0%)
 Frame = +3

Query: 255 WLNGNMLNSTKLEVVLQWCNVWATGCYYLWYWRNKYVHEEGYSPPNCPSRIITQNAMNYE 434
           W++ N+L+S K    + W + WAT C+ LW WRNK V +E +  P      +T     Y 
Sbjct: 5   WIDFNLLSSRKWREEIAWKDFWATACHCLWPWRNKEVRDEQFQRPQHVVTAVTDWVKQYN 64

Query: 435 SSKHLS-VVHERTNQVTMVHWRPAATGWTVINTDGAFKSTSNVAGCGAVVRNSDGFWIGG 611
            +  L  V+H     V M++W+P + GW  +NTDGA+K  S VAGCG V+R+S+G W GG
Sbjct: 65  QAMGLQQVLHNVEKNVVMINWKPPSEGWVKLNTDGAYKEGS-VAGCGGVIRDSNGVWRGG 123

Query: 612 IARRLFVDSAYLAELWGVIDGINLAASKGYTDIELQLDSSIVVNCLTGTNMGSIAGRQLV 791
            A+ L + SAY+AELWGV++G+  A S G+  +EL +DSS+V++ L     G   G  LV
Sbjct: 124 FAKNLGICSAYVAELWGVLEGLRYANSLGFNRVELNVDSSVVIHVLRRPGYGRPLGGALV 183

Query: 792 RRIRHLLACFSNVRILHIYREANKVADALANLGCTFLEGFSIIDTPPPSISLLVDADVVG 971
            RI+ +L     V I H YREANK AD LAN+GC         +T P     ++ ADV+G
Sbjct: 184 MRIQRMLDLDWEVVINHSYREANKCADVLANIGCAIDTHMVYYETCPTECRNVMLADVMG 243

Query: 972 VSTPRVIPV 998
           ++TPR+I V
Sbjct: 244 IATPRIISV 252


>gb|PNY06182.1| ribonuclease H [Trifolium pratense]
          Length = 686

 Score =  214 bits (545), Expect = 3e-60
 Identities = 115/268 (42%), Positives = 160/268 (59%), Gaps = 1/268 (0%)
 Frame = +3

Query: 192  LWNSFIPPEVRSDFYGVELLDWLNGNMLNSTKLEVVLQWCNVWATGCYYLWYWRNKYVHE 371
            +WN+ +P + R  F+     +W+  NM  + K    ++W  VWAT CYY+W WRNK+  +
Sbjct: 420  IWNNLVPLQGRLAFFTCNYQNWVVINMEVTVKTIEGVEWRVVWATACYYIWRWRNKFKFD 479

Query: 372  EGYSPPNCPSRIITQNAMNYESSKHL-SVVHERTNQVTMVHWRPAATGWTVINTDGAFKS 548
              +  P  P + I      Y  +K +  VV   + +   + WR        +NTDGA   
Sbjct: 480  SNFVRPLHPHKEIMNYVDCYNKAKPVVDVVSASSRRRIDIRWRAPQRDCICLNTDGAL-- 537

Query: 549  TSNVAGCGAVVRNSDGFWIGGIARRLFVDSAYLAELWGVIDGINLAASKGYTDIELQLDS 728
               VAGCG   R+S+G W GG A+ +   SAY+AELWGV +G+ LA  K + +IELQ+DS
Sbjct: 538  LGGVAGCGGAFRDSNGAWKGGFAKNIGSASAYVAELWGVYEGLCLARRKSFNNIELQVDS 597

Query: 729  SIVVNCLTGTNMGSIAGRQLVRRIRHLLACFSNVRILHIYREANKVADALANLGCTFLEG 908
             +VV  + G  +GS +GR L+ RIR L+    NVRI H+YREANKVADA+A LGCT  +G
Sbjct: 598  LVVVRGIKGEEVGSASGRILLNRIRQLMNMDWNVRISHVYREANKVADAIAALGCT-TQG 656

Query: 909  FSIIDTPPPSISLLVDADVVGVSTPRVI 992
            FS  +TPP ++  L   DV+GVSTPR+I
Sbjct: 657  FSYFNTPPANLERLCLDDVMGVSTPRII 684


>gb|PNX79929.1| ribonuclease H, partial [Trifolium pratense]
          Length = 709

 Score =  212 bits (539), Expect = 3e-59
 Identities = 110/267 (41%), Positives = 156/267 (58%), Gaps = 1/267 (0%)
 Frame = +3

Query: 195  WNSFIPPEVRSDFYGVELLDWLNGNMLNSTKLEVVLQWCNVWATGCYYLWYWRNKYVHEE 374
            W   +P + R DF+      W   NM + T LE  ++W  +WA+ C++LW WRNK   + 
Sbjct: 444  WQHLVPIQNRLDFFTCNYHVWFQRNMESVTSLEGGIEWRVIWASTCFHLWLWRNKEKFDT 503

Query: 375  GYSPPNCPSRIITQNAMNY-ESSKHLSVVHERTNQVTMVHWRPAATGWTVINTDGAFKST 551
             Y  P   SR I     NY ++ + ++++ E    V  V W      W  INTDGA +  
Sbjct: 504  EYVRPCLSSRYIHNYVENYYKAHRSIALIMEHPRVVINVRWEAPLVSWNSINTDGAVQH- 562

Query: 552  SNVAGCGAVVRNSDGFWIGGIARRLFVDSAYLAELWGVIDGINLAASKGYTDIELQLDSS 731
              +AGCG V+R+  G WIGG A+ +   +A++AELWG  +G+ LA  +G  ++ELQ+DS 
Sbjct: 563  -GIAGCGGVLRDHRGAWIGGFAKNIGTTNAFIAELWGAYEGLCLARRRGLINVELQIDSL 621

Query: 732  IVVNCLTGTNMGSIAGRQLVRRIRHLLACFSNVRILHIYREANKVADALANLGCTFLEGF 911
             VV  + G ++GS  GR L RRIR L+    NVRI H+YREANKVADALA++GC  + G 
Sbjct: 622  AVVKTIGGESIGSNGGRSLTRRIRRLIQEEWNVRIRHVYREANKVADALASIGCQSV-GC 680

Query: 912  SIIDTPPPSISLLVDADVVGVSTPRVI 992
             + D PP  +  L  AD +GV+TPR +
Sbjct: 681  ILFDDPPAGVDQLCFADRLGVTTPRSV 707


>gb|PNX81608.1| ribonuclease H [Trifolium pratense]
          Length = 630

 Score =  206 bits (524), Expect = 1e-57
 Identities = 108/271 (39%), Positives = 161/271 (59%), Gaps = 1/271 (0%)
 Frame = +3

Query: 189  SLWNSFIPPEVRSDFYGVELLDWLNGNMLNSTKLEVVLQWCNVWATGCYYLWYWRNKYVH 368
            S+W + +  + +  F+   L +W+  NM      +  L W +VWAT C++LW WRN+  H
Sbjct: 361  SVWCNLLNGKDKDWFFTAALDEWIILNMKKQLGRDNNLSWASVWATSCHFLWLWRNRETH 420

Query: 369  EEGYSPPNCPSRIITQNAMNY-ESSKHLSVVHERTNQVTMVHWRPAATGWTVINTDGAFK 545
             +    P  P ++I +  M Y E+     V+  R      V W+    GW  +NTDGA +
Sbjct: 421  GDSRLRPLQPWKLILKWVMQYFEADVSGIVIANRQKVEITVTWQCPEDGWLSLNTDGASR 480

Query: 546  STSNVAGCGAVVRNSDGFWIGGIARRLFVDSAYLAELWGVIDGINLAASKGYTDIELQLD 725
              ++ AGCG ++RNS+G W+GG +R L   +AY+AELWGV DG+ LA  KG   +++ +D
Sbjct: 481  GHTS-AGCGGLLRNSEGQWLGGFSRNLGRCNAYIAELWGVHDGLCLARDKGAKKLKVYVD 539

Query: 726  SSIVVNCLTGTNMGSIAGRQLVRRIRHLLACFSNVRILHIYREANKVADALANLGCTFLE 905
            SS+VV+ L  T  GS+ G +L++ IR LLA    +++ H YREAN  ADALAN+GC    
Sbjct: 540  SSVVVHTLNSTTGGSVVGWRLIQEIRRLLALDWEIKVCHSYREANACADALANMGCDHGP 599

Query: 906  GFSIIDTPPPSISLLVDADVVGVSTPRVIPV 998
            G  + +  P  +SLL+ AD +G++TPRVI V
Sbjct: 600  GIRVYEQCPSRLSLLLLADTMGITTPRVIVV 630


>gb|PNX94788.1| ribonuclease H [Trifolium pratense]
          Length = 509

 Score =  201 bits (511), Expect = 1e-56
 Identities = 106/297 (35%), Positives = 157/297 (52%), Gaps = 2/297 (0%)
 Frame = +3

Query: 114  TRLLSTNIHLFLTCRQYWHAKQLYISLWNSFIPPEVRSDFYGVELLDWLNGNMLNSTKLE 293
            T+   + IH+   C +  H       LW   I  + R  F+ +E  +W++ N+ N     
Sbjct: 220  TQFEESTIHVVRDCPRAVH-------LWRHLISNQERGYFFVIEFDEWIHLNLNNKFGQN 272

Query: 294  VVLQWCNVWATGCYYLWYWRNKYVHEEGYSPPNCPSRIITQNAMNYESSK--HLSVVHER 467
                W  +WAT CY LW WRNK +H++ +  P  P +++      Y+ S      V H R
Sbjct: 273  YGNDWKAIWATTCYLLWLWRNKSIHDDEFVIPERPWQVVMDYVAAYKHSMLTEEQVGHGR 332

Query: 468  TNQVTMVHWRPAATGWTVINTDGAFKSTSNVAGCGAVVRNSDGFWIGGIARRLFVDSAYL 647
              Q   + W     GW  +N+DGA K + + AGCG V+RN +G WI G  + L   +AY+
Sbjct: 333  VQQQVDITWLAPPPGWFALNSDGAAKLSESKAGCGGVLRNENGNWIEGFTKALGDTTAYM 392

Query: 648  AELWGVIDGINLAASKGYTDIELQLDSSIVVNCLTGTNMGSIAGRQLVRRIRHLLACFSN 827
            AELWG+ +G+ LA  +    +EL+ DS ++   L     GS  G  L+++IR LL     
Sbjct: 393  AELWGIYEGLRLAQRRDVMKLELRTDSQVIAQSLQDRKRGSNMGCALLKKIRSLLDGPWE 452

Query: 828  VRILHIYREANKVADALANLGCTFLEGFSIIDTPPPSISLLVDADVVGVSTPRVIPV 998
            V+I+H++REAN+ AD LAN+G     GF     PPP +  +VD D+ GVS PR+I V
Sbjct: 453  VKIIHVFREANRCADMLANMGSEGPIGFEFFANPPPRVMQIVDDDIRGVSFPRLISV 509


>dbj|GAU43502.1| hypothetical protein TSUD_398950 [Trifolium subterraneum]
          Length = 1962

 Score =  206 bits (525), Expect = 7e-56
 Identities = 105/267 (39%), Positives = 158/267 (59%), Gaps = 1/267 (0%)
 Frame = +3

Query: 195  WNSFIPPEVRSDFYGVELLDWLNGNMLNSTKLEVVLQWCNVWATGCYYLWYWRNKYVHEE 374
            W   +P EVR  F+   L +WL+ N+  + K+ +  +WC+ WA  C   W WRNK +HE+
Sbjct: 1695 WQQIVPFEVRGAFFMSNLQNWLHINVNYAGKVAIGQRWCDFWALACSCFWTWRNKELHED 1754

Query: 375  GYSPPNCPSRIITQNAMNYESS-KHLSVVHERTNQVTMVHWRPAATGWTVINTDGAFKST 551
             +  P+     I +   NY+++ + + V+ ++   +  + W+P    W  +NTDGA K  
Sbjct: 1755 NFMRPSNIILHIRKLGENYKNATRAMEVMGQKEKIIAHIRWKPPEGVWVKLNTDGACKE- 1813

Query: 552  SNVAGCGAVVRNSDGFWIGGIARRLFVDSAYLAELWGVIDGINLAASKGYTDIELQLDSS 731
             N AGCG VVR + G W+GG A+ +   SA++AELWGV++G+ L    G+ ++EL +DS 
Sbjct: 1814 DNRAGCGGVVRGNQGEWLGGFAKGVGKCSAFVAELWGVLEGLLLVQRMGFANVELSIDSK 1873

Query: 732  IVVNCLTGTNMGSIAGRQLVRRIRHLLACFSNVRILHIYREANKVADALANLGCTFLEGF 911
            IVV+ LT     S+ G  +VR++R LL    NVR+ H YREANK ADALAN+GCT     
Sbjct: 1874 IVVHALTSGTATSVDGYAIVRKVRRLLLLDWNVRVTHEYREANKCADALANIGCTLDMEC 1933

Query: 912  SIIDTPPPSISLLVDADVVGVSTPRVI 992
            +     P  I  ++ AD +G S+PR+I
Sbjct: 1934 TYFQECPAEIRHILLADELGTSSPRLI 1960


>gb|PNX97917.1| ribonuclease H [Trifolium pratense]
          Length = 712

 Score =  201 bits (511), Expect = 3e-55
 Identities = 106/267 (39%), Positives = 154/267 (57%), Gaps = 1/267 (0%)
 Frame = +3

Query: 195  WNSFIPPEVRSDFYGVELLDWLNGNMLNSTKLEVVLQWCNVWATGCYYLWYWRNKYVHEE 374
            W   +P EVR  F+   L +WL+ N+  + KL +  +WC+ WA  C   W WRNK +H E
Sbjct: 445  WQQIVPQEVRGAFFMSSLQNWLHINVNYAGKLAIGGRWCDFWALACSCFWTWRNKELHGE 504

Query: 375  GYSPPNCPSRIITQNAMNYESSKH-LSVVHERTNQVTMVHWRPAATGWTVINTDGAFKST 551
                P+   + + +   NY  + H + VV +  + V  +HW+P    +  +NTDGA K+ 
Sbjct: 505  KIVWPSNIIQHVRKLGENYRKALHTMEVVEQHESIVAHIHWKPPEGVFVKLNTDGASKA- 563

Query: 552  SNVAGCGAVVRNSDGFWIGGIARRLFVDSAYLAELWGVIDGINLAASKGYTDIELQLDSS 731
             N AGCG V+R + G W+GG A+ +   SA++AELWGV++G+ L    G+ ++EL +DS 
Sbjct: 564  GNRAGCGGVIRGNQGEWLGGFAKGVGNCSAFVAELWGVLEGLLLVQRMGFENVELSIDSK 623

Query: 732  IVVNCLTGTNMGSIAGRQLVRRIRHLLACFSNVRILHIYREANKVADALANLGCTFLEGF 911
             VV+ +T     S  G  +VR+IR LL    NV++LH YREANK ADALAN GC      
Sbjct: 624  AVVHVITAGKATSADGYAIVRKIRRLLLMDWNVKVLHEYREANKCADALANTGCILDLEL 683

Query: 912  SIIDTPPPSISLLVDADVVGVSTPRVI 992
                  P  I  ++ AD +G+STPR+I
Sbjct: 684  IFYQECPMEIRNILLADELGISTPRII 710


>dbj|GAU19541.1| hypothetical protein TSUD_303540 [Trifolium subterraneum]
          Length = 642

 Score =  198 bits (504), Expect = 1e-54
 Identities = 103/270 (38%), Positives = 151/270 (55%), Gaps = 3/270 (1%)
 Frame = +3

Query: 192  LWNSFIPPEVRSDFYGVELLDWLNGNMLNSTKLEVVLQWCNVWATGCYYLWYWRNKYVHE 371
            +W++ +    R  FY   L DW+  N+      E  ++W  VWA GC+ LW WRN+  H 
Sbjct: 378  VWSNLLNDTARYSFYHTNLEDWICMNLHKELGKETNVRWSCVWAVGCHVLWLWRNRECHG 437

Query: 372  EGYSPPNCPSRIITQNAMNYESSKHLSV---VHERTNQVTMVHWRPAATGWTVINTDGAF 542
            +    P    + I      Y+ +   S+   VH++      + W   A  W  +NTDGA 
Sbjct: 438  DMRVRPTQLWQTILYMVQQYKQADIKSIALPVHQKVE--VPIGWNKPAGDWIKLNTDGAS 495

Query: 543  KSTSNVAGCGAVVRNSDGFWIGGIARRLFVDSAYLAELWGVIDGINLAASKGYTDIELQL 722
            +       CG ++RNS+G W+GG +R L   +AYLAELWGV+DG+N    +G+  IEL +
Sbjct: 496  RPR-----CGGLLRNSNGQWLGGFSRHLGRCNAYLAELWGVLDGLNFTYERGHKKIELHI 550

Query: 723  DSSIVVNCLTGTNMGSIAGRQLVRRIRHLLACFSNVRILHIYREANKVADALANLGCTFL 902
            DS++VV  L     G + G ++++ IR LLA   +V+I H YREAN  ADALANLGC   
Sbjct: 551  DSNVVVQTLHSARDGGVVGWRIIQEIRRLLALDWDVKICHSYREANACADALANLGCDHG 610

Query: 903  EGFSIIDTPPPSISLLVDADVVGVSTPRVI 992
             G  + +  PP +S L+ AD +G++TPRV+
Sbjct: 611  PGLRVYEQCPPKVSSLLLADAMGITTPRVV 640


>dbj|GAU13938.1| hypothetical protein TSUD_262650 [Trifolium subterraneum]
          Length = 875

 Score =  199 bits (506), Expect = 8e-54
 Identities = 108/294 (36%), Positives = 157/294 (53%), Gaps = 1/294 (0%)
 Frame = +3

Query: 120  LLSTNIHLFLTCRQYWHAKQLYISLWNSFIPPEVRSDFYGVELLDWLNGNMLNSTKLEVV 299
            L  T +H    C        L I  W   +P E RS F+  +  DW++ N++        
Sbjct: 590  LEETTLHAIRDCA-------LIIPFWLQVVPMEDRSSFFMEDTQDWISRNLMKGRTRRRG 642

Query: 300  LQWCNVWATGCYYLWYWRNKYVHEEGYSPPNCPSRIITQNAMNYESSKHLS-VVHERTNQ 476
              WC+ WAT C+ LW WRNK  H+E +  P  P   + +    Y+ +K  S ++  R   
Sbjct: 643  SDWCDFWATTCHSLWMWRNKEAHDEEFVRPMQPVNYVQKRVEEYQHAKQASDLLDGREYT 702

Query: 477  VTMVHWRPAATGWTVINTDGAFKSTSNVAGCGAVVRNSDGFWIGGIARRLFVDSAYLAEL 656
            +  + W+P +  +  +NTDGA K  +N AGCG ++R + G W+GG A+ +   SA++AEL
Sbjct: 703  LVDIGWKPPSGSFVKLNTDGARKD-NNKAGCGGIIRGNHGEWLGGFAKGVGECSAFIAEL 761

Query: 657  WGVIDGINLAASKGYTDIELQLDSSIVVNCLTGTNMGSIAGRQLVRRIRHLLACFSNVRI 836
            WGV +G++LA    +  +EL +DS  VV  ++   + S  G  LV  IR LL     V I
Sbjct: 762  WGVFEGLSLAKRMCFRKVELHIDSVAVVQVISTGKLKSKLGWSLVLNIRKLLDLDWEVTI 821

Query: 837  LHIYREANKVADALANLGCTFLEGFSIIDTPPPSISLLVDADVVGVSTPRVIPV 998
             H YRE NK ADALAN+GC         +  PP +  LV ADV+G++TPR+I V
Sbjct: 822  THAYRETNKCADALANIGCQLGREIIFFEDCPPHMKDLVLADVMGITTPRMISV 875


>gb|PNY17666.1| ribonuclease H [Trifolium pratense]
          Length = 856

 Score =  198 bits (504), Expect = 1e-53
 Identities = 109/289 (37%), Positives = 160/289 (55%), Gaps = 1/289 (0%)
 Frame = +3

Query: 129  TNIHLFLTCRQYWHAKQLYISLWNSFIPPEVRSDFYGVELLDWLNGNMLNSTKLEVVLQW 308
            T +H+   CR       +   +W   IP  + S F+G ++  W+  NM+ + + +    W
Sbjct: 575  TVLHVLRDCR-------VASFVWRYLIPATLWSVFFGGDMAQWVQFNMVQA-RHDGRKSW 626

Query: 309  CNVWATGCYYLWYWRNKYVHEEGYSPPNCPSRIITQNAMNYESS-KHLSVVHERTNQVTM 485
               WAT CY LW WRN+ VH+  YS P     II +   +Y+   +  +  H R  Q  M
Sbjct: 627  PKTWATACYMLWRWRNREVHDAEYSRPTNTPVIIRRAVADYDMGLRSQNPEHYREMQRRM 686

Query: 486  VHWRPAATGWTVINTDGAFKSTSNVAGCGAVVRNSDGFWIGGIARRLFVDSAYLAELWGV 665
            V W+  A GW  INTDGA K    +AG G V+R+ +G W+   +R +   +A+ AELWG+
Sbjct: 687  VQWQRPAEGWICINTDGAAKERGKIAGSGRVMRDHNGIWLCSFSRFIGEATAFDAELWGI 746

Query: 666  IDGINLAASKGYTDIELQLDSSIVVNCLTGTNMGSIAGRQLVRRIRHLLACFSNVRILHI 845
             DG+ +A  +GY  +ELQ+ S  VV+CLT  NM       LVRRIR ++     V I H+
Sbjct: 747  FDGLTIARRQGYQHVELQIHSHNVVSCLT-NNMERNGLCILVRRIRSIMQENWRVVIKHV 805

Query: 846  YREANKVADALANLGCTFLEGFSIIDTPPPSISLLVDADVVGVSTPRVI 992
            YREANK+AD LA+L C      S+ + PP  ++ +   D++GVSTPR++
Sbjct: 806  YREANKIADGLASLACVTKVSLSLYEQPPTEVAQVYHDDLIGVSTPRLV 854


>dbj|GAU31120.1| hypothetical protein TSUD_212270 [Trifolium subterraneum]
          Length = 347

 Score =  188 bits (478), Expect = 2e-53
 Identities = 100/235 (42%), Positives = 135/235 (57%), Gaps = 1/235 (0%)
 Frame = +3

Query: 192 LWNSFIPPEVRSDFYGVELLDWLNGNMLNSTKLEVVLQWCNVWATGCYYLWYWRNKYVHE 371
           +WN  +P + R  F+      W   NMLN  KLE   +W  VWA  CY+LW WRNK   +
Sbjct: 114 VWNHLLPMQTRLGFFTCHYHSWFQHNMLNYEKLEGGNEWRVVWAVTCYHLWLWRNKETFD 173

Query: 372 EGYSPPNCPSRIITQNAMNYESSKHLS-VVHERTNQVTMVHWRPAATGWTVINTDGAFKS 548
             +  P   S++I     NY S+K  S  + ++      V W     GW  +NTDGA + 
Sbjct: 174 YEFVRPRYASQVIHHYVENYISAKSSSSFIMDKARININVRWEAPRNGWISLNTDGAVQH 233

Query: 549 TSNVAGCGAVVRNSDGFWIGGIARRLFVDSAYLAELWGVIDGINLAASKGYTDIELQLDS 728
              VAGCG V+R+  G WI G ++ +   S + AELWGV  G+ LA  +G  +IELQ+DS
Sbjct: 234 --GVAGCGGVLRDYQGNWITGFSKFIGTASVFNAELWGVYAGLCLARQRGINNIELQIDS 291

Query: 729 SIVVNCLTGTNMGSIAGRQLVRRIRHLLACFSNVRILHIYREANKVADALANLGC 893
             VV  L   ++GS  G+ LVRR+R+L     NVRI H+YREAN+VADALA++GC
Sbjct: 292 LAVVRNLGDDSLGSSEGKSLVRRVRNLFQEGLNVRIQHVYREANRVADALASMGC 346


>gb|PNY12420.1| ribonuclease H [Trifolium pratense]
          Length = 1341

 Score =  196 bits (498), Expect = 3e-52
 Identities = 105/294 (35%), Positives = 162/294 (55%), Gaps = 1/294 (0%)
 Frame = +3

Query: 120  LLSTNIHLFLTCRQYWHAKQLYISLWNSFIPPEVRSDFYGVELLDWLNGNMLNSTKLEVV 299
            ++ T IH+   C +        + +W + +P   R  F    + +W+  N+ NS   +  
Sbjct: 1056 VVETAIHVMRDCPKA-------MQIWVTVVPANDRGSFLMGNVKNWVCFNLQNSVTWDRR 1108

Query: 300  LQWCNVWATGCYYLWYWRNKYVHEEGYSPPNCPSRIITQNAMNY-ESSKHLSVVHERTNQ 476
             QW   WA  C+ LW+WRNK +H+E +  P  P + + +   +Y  +  + +VV ERT  
Sbjct: 1109 GQWREYWAQACHCLWFWRNKDIHDEDFVRPTRPVQQVMKLLGDYMHAFNNNNVVLERTRS 1168

Query: 477  VTMVHWRPAATGWTVINTDGAFKSTSNVAGCGAVVRNSDGFWIGGIARRLFVDSAYLAEL 656
            +  + W P    +  +NTDGA+K  +  AGCG V+R  +G W+GG A+ + + SA++AEL
Sbjct: 1169 IRWIGWSPPKMNFVKLNTDGAYKE-NRAAGCGGVIRGCEGEWLGGYAKGVGLCSAFVAEL 1227

Query: 657  WGVIDGINLAASKGYTDIELQLDSSIVVNCLTGTNMGSIAGRQLVRRIRHLLACFSNVRI 836
            WGV++G+      G+T +EL +DS  VV  +    +GS +G  LV++I  +L     V I
Sbjct: 1228 WGVLEGLRYVHHIGFTMVELNIDSEAVVKVVKARQLGSSSGAALVKQIWRMLDMNWKVEI 1287

Query: 837  LHIYREANKVADALANLGCTFLEGFSIIDTPPPSISLLVDADVVGVSTPRVIPV 998
             H YREANK ADALANLG T  +     D  P  I  +  AD +G++ PR+IPV
Sbjct: 1288 SHTYREANKCADALANLGSTLDKELIFFDDCPSHIREICTADRLGITNPRLIPV 1341


>gb|PNX81975.1| ribonuclease H, partial [Trifolium pratense]
          Length = 240

 Score =  182 bits (461), Expect = 3e-52
 Identities = 89/231 (38%), Positives = 139/231 (60%), Gaps = 2/231 (0%)
 Frame = +3

Query: 306 WCNVWATGCYYLWYWRNKYVHEEGYSPPNCPSRIITQNAMNYESSKHLSVVHERTNQ--V 479
           W N WA  C+Y+W WRNK  + + YS P   + ++ ++  NY  + + +   +   +  V
Sbjct: 9   WGNYWAYACHYIWSWRNKEKYNDNYSRPYNQAGVVLRSLKNYTMAMNATTTTQNVYRPCV 68

Query: 480 TMVHWRPAATGWTVINTDGAFKSTSNVAGCGAVVRNSDGFWIGGIARRLFVDSAYLAELW 659
            +V W+P   GW +++ D + +   ++ G G ++R SDG W+GG ++ + ++SAY+AELW
Sbjct: 69  VLVRWKPPLVGWVLLDADESCREDGHI-GFGGIIRGSDGEWLGGSSKYIGIESAYVAELW 127

Query: 660 GVIDGINLAASKGYTDIELQLDSSIVVNCLTGTNMGSIAGRQLVRRIRHLLACFSNVRIL 839
           G+++G+  A S  +  IE+ +DS  V+  ++    GS  GR LV +IR LLA    V + 
Sbjct: 128 GLLEGLMYARSLQFKFIEVHVDSLAVMQVVSSHENGSWKGRTLVEKIRRLLALDWEVVVH 187

Query: 840 HIYREANKVADALANLGCTFLEGFSIIDTPPPSISLLVDADVVGVSTPRVI 992
           H YREAN  ADALAN GC+   GFS  D  P SI+ L+  D++G +TPRVI
Sbjct: 188 HSYREANCCADALANYGCSLTSGFSFFDVCPSSINNLLFFDLLGYTTPRVI 238


>dbj|GAU38338.1| hypothetical protein TSUD_61990 [Trifolium subterraneum]
          Length = 813

 Score =  194 bits (492), Expect = 5e-52
 Identities = 97/268 (36%), Positives = 155/268 (57%), Gaps = 1/268 (0%)
 Frame = +3

Query: 192  LWNSFIPPEVRSDFYGVELLDWLNGNMLNSTKLEVVLQWCNVWATGCYYLWYWRNKYVHE 371
            +WN  IP + ++ FY  +L  W++ N+ N  +     +WC+ WA  CY LW WRNK +HE
Sbjct: 545  IWNYVIPSKDKAIFYMGDLKQWISFNINNYMRWMSSGKWCDFWAYCCYCLWQWRNKEIHE 604

Query: 372  EGYSPPNCPSRIITQNAMNYE-SSKHLSVVHERTNQVTMVHWRPAATGWTVINTDGAFKS 548
            E +  P  P + I Q   +Y  ++ ++++V  +   ++M+ W P +  +  +NTDGA+K 
Sbjct: 605  EQFVRPIRPVQYIMQLLSDYVCAASNINIVSGKNQVISMIRWNPPSDLFVKLNTDGAYKE 664

Query: 549  TSNVAGCGAVVRNSDGFWIGGIARRLFVDSAYLAELWGVIDGINLAASKGYTDIELQLDS 728
             + + GCG V R + G W+GG A+ + + S ++AE WGV +G++     G+  + L +DS
Sbjct: 665  NA-IVGCGGVTRGNHGEWLGGFAKCVGICSVFVAESWGVFEGLSYVHRLGFRKVVLHIDS 723

Query: 729  SIVVNCLTGTNMGSIAGRQLVRRIRHLLACFSNVRILHIYREANKVADALANLGCTFLEG 908
             +VV  +   +  S AG  L+ +I  LL     V + H YREAN  ADALANLGC+    
Sbjct: 724  EVVVRVIKNGSSDSSAGSSLLTQIWRLLEMDWIVEVSHTYREANNCADALANLGCSLDYD 783

Query: 909  FSIIDTPPPSISLLVDADVVGVSTPRVI 992
              I +  PP I  + D D++G+S+PR+I
Sbjct: 784  TVIFNDFPPQIRNIFDTDLMGISSPRLI 811


>gb|PNY00696.1| ribonuclease H [Trifolium pratense]
          Length = 276

 Score =  181 bits (459), Expect = 2e-51
 Identities = 93/232 (40%), Positives = 139/232 (59%), Gaps = 1/232 (0%)
 Frame = +3

Query: 306 WCNVWATGCYYLWYWRNKYVHEEGYSPPNCPSRIITQNAMNYESSKHLSVVHERTNQVTM 485
           WC+ WAT C+ LW WRNK +H++ +  P    + ++    +Y  +K  + V      V++
Sbjct: 46  WCDFWATACHNLWIWRNKELHDDDFVRPMYAVQYVSNKVEDYMQAKKATEVLRCREVVSI 105

Query: 486 -VHWRPAATGWTVINTDGAFKSTSNVAGCGAVVRNSDGFWIGGIARRLFVDSAYLAELWG 662
            + W P       +NTDGA K  +N+A CG ++R S G W+GG A+ +   SA++AELWG
Sbjct: 106 QIGWIPPTRDRVKLNTDGARKH-NNIAWCGGIIRGSQGEWLGGFAKGVGNCSAFVAELWG 164

Query: 663 VIDGINLAASKGYTDIELQLDSSIVVNCLTGTNMGSIAGRQLVRRIRHLLACFSNVRILH 842
           V +G++ A   G+  +EL +DS  VVN LT   + S+A   LVR IR L+A    V I+H
Sbjct: 165 VYEGLSYARRLGFMKVELNIDSVTVVNVLTKGTLQSLARAMLVRNIRSLIALDWEVSIVH 224

Query: 843 IYREANKVADALANLGCTFLEGFSIIDTPPPSISLLVDADVVGVSTPRVIPV 998
            YRE+N+ ADAL N+GCT  +   + D  P  I  L+ ADV+G++TPR++ V
Sbjct: 225 AYRESNQCADALVNIGCTLDKEIIVYDDCPSEIKDLLLADVLGITTPRLLHV 276


>dbj|BAE71259.1| hypothetical protein [Trifolium pratense]
          Length = 553

 Score =  188 bits (477), Expect = 2e-51
 Identities = 98/285 (34%), Positives = 156/285 (54%), Gaps = 5/285 (1%)
 Frame = +3

Query: 153  CRQYWHAKQLYI----SLWNSFIPPEVRSDFYGVELLDWLNGNMLNSTKLEVVLQWCNVW 320
            C++ W   +L+      + +S   P  R+ F+   L  W+  N+    K  +   WC+ W
Sbjct: 268  CKRMWQLFRLHSYVCQQIDDSCNVPLCRNTFFMENLQQWIYSNLSKGAKGRIDSAWCDYW 327

Query: 321  ATGCYYLWYWRNKYVHEEGYSPPNCPSRIITQNAMNY-ESSKHLSVVHERTNQVTMVHWR 497
            AT C+  W WRNK +H+  ++ P    + + +   +Y +++K   ++  + + +  + W+
Sbjct: 328  ATACHCFWTWRNKEIHDAEFTRPIYAMQHVYRRVNDYYQANKTNRLMRIKNDMLVYISWK 387

Query: 498  PAATGWTVINTDGAFKSTSNVAGCGAVVRNSDGFWIGGIARRLFVDSAYLAELWGVIDGI 677
            P    +  +NTDGA K   N  GCG ++R S G W+GG AR L   SA +AELWGV +G+
Sbjct: 388  PPCGSYVKLNTDGACKD-QNRGGCGGIIRGSQGEWLGGFARGLGNCSAIIAELWGVAEGL 446

Query: 678  NLAASKGYTDIELQLDSSIVVNCLTGTNMGSIAGRQLVRRIRHLLACFSNVRILHIYREA 857
            + A   G+T +EL +DS +VV  +      S  G  LV+ IR +L     ++I H YRE+
Sbjct: 447  SYARRLGFTAVELNVDSVVVVQAIKTGRFSSSVGLPLVKHIRRMLDLDWEIKIEHAYRES 506

Query: 858  NKVADALANLGCTFLEGFSIIDTPPPSISLLVDADVVGVSTPRVI 992
            NK ADA+AN+GC         D+ P SI  L+ AD +G++TPR+I
Sbjct: 507  NKCADAMANIGCHLDRETIFYDSCPISIKELLLADELGITTPRII 551


>dbj|GAU31911.1| hypothetical protein TSUD_270960 [Trifolium subterraneum]
          Length = 853

 Score =  191 bits (484), Expect = 8e-51
 Identities = 99/258 (38%), Positives = 145/258 (56%), Gaps = 1/258 (0%)
 Frame = +3

Query: 129  TNIHLFLTCRQYWHAKQLYISLWNSFIPPEVRSDFYGVELLDWLNGNMLNSTKLEVVLQW 308
            T IH+   C        + ++ WN  IP   R  FY  E+  W+N N+ NS K      W
Sbjct: 586  TIIHVMRDC-------PIAVNFWNQVIPVVDRGVFYMGEINQWMNFNLNNSIKWINNGNW 638

Query: 309  CNVWATGCYYLWYWRNKYVHEEGYSPPNCPSRIITQNAMNYESSKHLS-VVHERTNQVTM 485
            C+ WA GC+ LW WRN+ +HE+ +  P+ P   + + AM Y  +   S +   RT  ++M
Sbjct: 639  CSFWALGCFCLWKWRNQELHEDSFVRPSMPVHHVGRMAMEYRKAMSNSELALGRTRAISM 698

Query: 486  VHWRPAATGWTVINTDGAFKSTSNVAGCGAVVRNSDGFWIGGIARRLFVDSAYLAELWGV 665
            + W P    +  +NTDGA K    +AGCG +VR S+G WIGG A+ + + +A++AE+WGV
Sbjct: 699  IRWSPPKANFVKLNTDGACKEHI-IAGCGGIVRGSEGEWIGGFAKCVGMCNAFIAEMWGV 757

Query: 666  IDGINLAASKGYTDIELQLDSSIVVNCLTGTNMGSIAGRQLVRRIRHLLACFSNVRILHI 845
            ++G+      G+  +EL +DS+ VV  +    + S  G  L R+I  L+A    V + HI
Sbjct: 758  LEGLRYVRRLGFRKVELNIDSAAVVQVIKTGRLQSSTGSALARQIWKLMAMDWEVEVNHI 817

Query: 846  YREANKVADALANLGCTF 899
            YREANK ADALAN+G  F
Sbjct: 818  YREANKCADALANMGSNF 835


>gb|PNY15602.1| ribonuclease H [Trifolium pratense]
          Length = 437

 Score =  181 bits (460), Expect = 7e-50
 Identities = 104/292 (35%), Positives = 154/292 (52%), Gaps = 4/292 (1%)
 Frame = +3

Query: 129 TNIHLFLTCRQYWHAKQLYISLWNSFIPPEVRSDFYGVELLDWLNGNMLNSTKLEVVLQW 308
           T+IH    C        +  ++W S +P + R  F+G  L  W+N N+ +       ++W
Sbjct: 155 TSIHALRDCT-------VVRNMWLSVVPCDSRGLFFGGGLESWINYNLSSDIDRINGIRW 207

Query: 309 CNVWATGCYYLWYWRNKYVHEEGYSPPNCPSRIITQNAMNYESS----KHLSVVHERTNQ 476
            + WAT C++LW WRNK  H E +S P      I Q   +Y ++    KH++ + +    
Sbjct: 208 EDFWATACHFLWSWRNKEQHVEEFSRPVQAIVHILQCCSHYYNACMELKHVNTIQKG--- 264

Query: 477 VTMVHWRPAATGWTVINTDGAFKSTSNVAGCGAVVRNSDGFWIGGIARRLFVDSAYLAEL 656
           V  + W+    GW  +NTDGA K    ++GCG ++R+  G W GG A+ +   S  +AEL
Sbjct: 265 VCWIGWKVPEEGWVKLNTDGASKG-EGLSGCGGIIRDHQGNWCGGFAKFVGTGSVLIAEL 323

Query: 657 WGVIDGINLAASKGYTDIELQLDSSIVVNCLTGTNMGSIAGRQLVRRIRHLLACFSNVRI 836
           WGV++G+ L   KGY  +E+ +DS  VV  +      S  G  LV+ I  LL     V+I
Sbjct: 324 WGVLEGLKLVWRKGYRKVEVNIDSISVVKMILNGMTSSALGFSLVKSIGRLLDEQWEVKI 383

Query: 837 LHIYREANKVADALANLGCTFLEGFSIIDTPPPSISLLVDADVVGVSTPRVI 992
            H YRE NK ADALA++GC         +T P SI  +  ADV+G +TPR+I
Sbjct: 384 SHSYRETNKCADALASMGCILDCNIVFFETCPSSIKNVFSADVMGRNTPRLI 435


>dbj|GAU10071.1| hypothetical protein TSUD_422240 [Trifolium subterraneum]
          Length = 306

 Score =  177 bits (450), Expect = 9e-50
 Identities = 89/260 (34%), Positives = 144/260 (55%), Gaps = 1/260 (0%)
 Frame = +3

Query: 120 LLSTNIHLFLTCRQYWHAKQLYISLWNSFIPPEVRSDFYGVELLDWLNGNMLNSTKLEVV 299
           ++ T++H+   C        L    W   +P   RS F+  +L  W+  N+    +    
Sbjct: 48  VVETSMHVMRDC-------SLVTPFWLQVVPMRERSTFFTEDLQQWIITNINTGRRGNNG 100

Query: 300 LQWCNVWATGCYYLWYWRNKYVHEEGYSPPNCPSRIITQNAMNYESSKHLSVVHERTNQV 479
             WC++WAT C+ LW WRNK +H+  Y  P+   + + +   +Y  ++ ++ +   + + 
Sbjct: 101 SAWCDIWATACHCLWTWRNKEMHDNNYVRPSHMVQHVYKIVEDYSQARRVNELMRNSERF 160

Query: 480 -TMVHWRPAATGWTVINTDGAFKSTSNVAGCGAVVRNSDGFWIGGIARRLFVDSAYLAEL 656
            T + W+P    +  +NTDGA K  +N+AGCG ++R + G W+GG A+ + V SA+ AEL
Sbjct: 161 FTQIGWQPPCGHFVKLNTDGACKD-NNIAGCGGIIRGAHGEWLGGFAKGVGVCSAFAAEL 219

Query: 657 WGVIDGINLAASKGYTDIELQLDSSIVVNCLTGTNMGSIAGRQLVRRIRHLLACFSNVRI 836
           WGV++G+  A   G+T +EL +DS  VV  +    + S  G  LV++IR  L     + I
Sbjct: 220 WGVLEGLQYARRLGFTAVELNIDSITVVQVIKTGRLSSPIGLPLVKQIRRYLELDWEIMI 279

Query: 837 LHIYREANKVADALANLGCT 896
            H YRE+NK ADALA++GCT
Sbjct: 280 AHAYRESNKCADALASIGCT 299