BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus22_contig00004239
         (4257 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX92765.1| ribonuclease H [Trifolium pratense]                    615   0.0  
gb|PNX93586.1| ribonuclease H, partial [Trifolium pratense]           584   0.0  
gb|PNY15195.1| ribonuclease H, partial [Trifolium pratense]           570   0.0  
dbj|GAU51664.1| hypothetical protein TSUD_268670 [Trifolium subt...   543   0.0  
gb|PNX93226.1| ribonuclease H, partial [Trifolium pratense]           606   0.0  
gb|PNX92520.1| ribonuclease H, partial [Trifolium pratense]           611   0.0  
gb|KYP37151.1| Putative ribonuclease H protein At1g65750 family ...   476   0.0  
gb|PNX92714.1| ribonuclease H [Trifolium pratense]                    561   0.0  
gb|PNX92852.1| hypothetical protein L195_g015995, partial [Trifo...   470   0.0  
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas...   550   0.0  
gb|KYP75037.1| Transposon TX1 uncharacterized [Cajanus cajan] >g...   459   0.0  
gb|PNY14401.1| ribonuclease H [Trifolium pratense]                    554   0.0  
dbj|GAU35685.1| hypothetical protein TSUD_162570 [Trifolium subt...   520   0.0  
dbj|GAU50504.1| hypothetical protein TSUD_409790 [Trifolium subt...   507   0.0  
gb|KYP54501.1| Transposon TX1 uncharacterized [Cajanus cajan]         423   0.0  
gb|KYP46979.1| LINE-1 reverse transcriptase isogeny [Cajanus cajan]   459   0.0  
gb|PNY06442.1| ribonuclease H [Trifolium pratense]                    419   0.0  
ref|XP_020240638.1| uncharacterized protein LOC109819343 [Cajanu...   386   0.0  
dbj|GAU48983.1| hypothetical protein TSUD_245740 [Trifolium subt...   404   0.0  
dbj|GAU41508.1| hypothetical protein TSUD_302460 [Trifolium subt...   584   0.0  

>gb|PNX92765.1| ribonuclease H [Trifolium pratense]
          Length = 1310

 Score =  615 bits (1586), Expect(3) = 0.0
 Identities = 305/493 (61%), Positives = 372/493 (75%)
 Frame = -2

Query: 2933 KFFHAQTIIRRKRNKIHGLFLPDGNWCIDDNILQQEAQRYFKRLFWTDSLTDNTPQ*LIH 2754
            KFFHAQTIIRRKRNKIHGL LP G+WC +D+ILQ+EA ++FK LF   + + ++    + 
Sbjct: 314  KFFHAQTIIRRKRNKIHGLTLPCGSWCTEDSILQEEALKFFKNLFSPATGSSHSHSFDVK 373

Query: 2753 ITTPRLDDHAVLALTQPVTHEEVRKALNTMHAYKSHGPDGFQGIFFKQYWHLIGNDVCNL 2574
             T P+ D     ALTQ VT EEV +ALN MH  KS GPDGFQG+FF++YWH++G D+  +
Sbjct: 374  YT-PKFDSVQASALTQEVTKEEVYQALNQMHPLKSPGPDGFQGVFFRRYWHIMGEDIYTM 432

Query: 2573 VIKAFESGTFDPILAEIFLGFTQGIHRRPQXXXXXXXXXXXISKVDSPRTFKDFRPISLC 2394
            + +AF +G F+P LAE  +                      I KVD P  FK+FRPISLC
Sbjct: 433  INQAFSTGHFNPSLAETLI--------------------CLIPKVDCPNNFKEFRPISLC 472

Query: 2393 NTIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVLQEALHSMHXXXXXKGGV 2214
            NT+YKLITK+LVNR+RP+L+ IIGP+QS FLPGRGTCDNAI+LQE +HSM      KG V
Sbjct: 473  NTLYKLITKVLVNRLRPMLDSIIGPFQSSFLPGRGTCDNAIILQEIIHSMRKSKSKKGDV 532

Query: 2213 AYKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSSLSLIWNGKRLPSFSPNR 2034
            AYKIDLEKAYD+V+W +LRSCL +FGFP  TIKLIMHCVSSSSLSLIWNG RLP+FSP R
Sbjct: 533  AYKIDLEKAYDNVDWSYLRSCLRDFGFPPITIKLIMHCVSSSSLSLIWNGNRLPNFSPTR 592

Query: 2033 GLRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGPALSHLFFADDVLLFSKA 1854
            GLRQGDPLSPYLFVICMEKL+ AI++ V D  WKP+++SK GP  SHLFFADDVLLFSKA
Sbjct: 593  GLRQGDPLSPYLFVICMEKLSLAIVEAVQDNCWKPIRVSKNGPCFSHLFFADDVLLFSKA 652

Query: 1853 TRSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDSIVTITGIRSAVSFDKYL 1674
            T SQ  L+AN+F  F+ ASGL++N  KSRA FS   TR K + + +++ IRS  SF  YL
Sbjct: 653  TCSQGRLMANLFNNFSKASGLKINCTKSRAFFSAGVTRRKREKLTSLSSIRSTNSFGNYL 712

Query: 1673 GFPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAKSVLNSIPIYYMQVAWIP 1494
            GFPMI GR+ K DF F++DK+ SRLASWKNKLL + GR+TLAKSVLNSIP YYMQ++W+P
Sbjct: 713  GFPMISGRVRKEDFNFILDKLNSRLASWKNKLLNKPGRVTLAKSVLNSIPTYYMQISWLP 772

Query: 1493 QSICTRIDNLTRS 1455
             SIC +ID +TR+
Sbjct: 773  SSICYQIDQMTRN 785



 Score =  362 bits (928), Expect(3) = 0.0
 Identities = 163/312 (52%), Positives = 229/312 (73%)
 Frame = -1

Query: 3867 AFWTRAGYSSVAVVEPRGLSGGLWILRQNGSNVSISIFDVFADTITIKLKVGDDSWLFTG 3688
            +F+   GY  VA+VE +G SGG+WIL+Q+G+N+ +   D+  + IT  + +G + W  TG
Sbjct: 3    SFFEVHGYIKVAIVEAQGHSGGVWILKQDGNNLVVQWEDIHNNAITFSIALGVNKWYCTG 62

Query: 3687 VYASPVYTNRLQLWDHLISLHDHVTEPWLLMGDFNEILLPSEQRGGNIYQNRADDFLRVL 3508
            +YASP  T R   W +L +L + ++ PW L+GDFNEI+ PSEQRGG   Q+RAD  + V+
Sbjct: 63   LYASPTPTIRANFWHYLCNLKETISGPWFLIGDFNEIIAPSEQRGGIFTQSRADGLISVM 122

Query: 3507 DACSLTDMPSTGGNFTWNRPCRGQRRVSKKLDRAVASITWRHLFSEAFVEVLCRHHSDHN 3328
            D C L D+ S GG FTW+R CRG+R ++ KLDR + ++ WR +F EA++E LCR +SDHN
Sbjct: 123  DNCDLVDLNSVGGKFTWHRNCRGERSIANKLDRGMTNLQWRLIFPEAYLETLCRSNSDHN 182

Query: 3327 PILVRCGGLPQNRGVRPFRFEAAWITHPEYQDVVKRARSIENSDPVLALHRVKEESIIFN 3148
            PI++RCGGLP  RG RPFRFEAAW++H +Y++VV+ A + E   P+ ALH +KE+SIIFN
Sbjct: 183  PIILRCGGLPIARGTRPFRFEAAWMSHSDYENVVESAWTKERGCPISALHTIKEDSIIFN 242

Query: 3147 NEIFGSIWKRKNALERRLEGVQKALDRIDSARLVYLEHQLQKNYDTIPAQEELHWYQKSR 2968
             E+FG+I+K+K  LE RL+G+Q+ ++R+DS RL+ LE QLQ+  D +  QEE+ WYQKSR
Sbjct: 243  KEVFGNIFKKKRNLEDRLKGIQQTMERVDSVRLILLEQQLQQELDQVLYQEEMLWYQKSR 302

Query: 2967 EKWIQLGDRNTK 2932
            EKWI+ GD+NTK
Sbjct: 303  EKWIKFGDKNTK 314



 Score =  267 bits (682), Expect(3) = 0.0
 Identities = 129/313 (41%), Positives = 185/313 (59%), Gaps = 10/313 (3%)
 Frame = -3

Query: 1462 LDRDFIWKGSQDKGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKLW 1283
            + R+FIWKGS +KGI+LVGW SIT+TK  GGLGIR+ARE NTAMLGKLVWD+ + + K W
Sbjct: 782  MTRNFIWKGSSNKGIHLVGWSSITQTKSDGGLGIRLAREANTAMLGKLVWDIQQNSPKPW 841

Query: 1282 CHVLAEKYMGLSSILEVSKKNGSLTWNSIMKARGVLKDGYDFRLGNGESSFWYDNWTPYG 1103
              +L  KY+     +    + GS  WNSI KA+ +L DG+ +R+ +G S FWY  W  + 
Sbjct: 842  VLMLRSKYLQHQPFINAPTQPGSPIWNSISKAKMILADGFKYRVSDGSSLFWYSPWLSHK 901

Query: 1102 KLSALVPFVDIHDTQLSIKDIVHDDSWQLQRLYTNIPQYVSDYIQAIQPCLNPTIDDGYT 923
             L   V +V I D+Q+ IKDI  +DSW L  LYT +   + + I + +  LN    D + 
Sbjct: 902  LLGTEVDYVAIQDSQIRIKDIYFNDSWHLNLLYTPLSSEMKERITSTKFILNNGTIDCFI 961

Query: 922  WKGSLDGVYTTKSGFKWIVDKRQQVTDVRTILSWLWIWRLPVSEKIRFFFWTACHNTLP- 746
            W+G++DG+Y   SG+KW++   QQ  +V +I SW WIW+L   EKI+F  W ACH+++P 
Sbjct: 962  WQGNIDGIYNASSGYKWLL---QQKYNVPSIQSWNWIWKLQAPEKIKFLIWCACHHSIPT 1018

Query: 745  ---------FTVPNCQRCGCAIEDFLHCIRDCPVPRQIWFILGFCDPAFYQVTNSIDWLL 593
                      +   C RC    E  +HC+RDC   ++IW  LG+ + +F+   N   WL 
Sbjct: 1019 MYMLHHRNMTSSSICTRCSNNEETVIHCLRDCTTAKRIWEALGYSNISFFSSNNLESWLK 1078

Query: 592  AGAKSTVPQIFFS 554
              +      +F +
Sbjct: 1079 IHSYGPAANLFLA 1091



 Score =  111 bits (277), Expect = 1e-20
 Identities = 52/122 (42%), Positives = 80/122 (65%)
 Frame = -1

Query: 372  GQAGFGGILRTNEGKWIRGFSDNIGFSNSLHAKLLGLYRGLSFTWDQGYCLVKCYSDSAL 193
            G+AGFGG++R  +G WI GFS  +G SN+  A+L+ ++ GL    ++GY  + CYSDS  
Sbjct: 1166 GRAGFGGLIREGDGSWIIGFSGFLGISNNTFAELMAVFHGLKIARERGYRRIHCYSDSQT 1225

Query: 192  SIHLVT*PLNKWHFYAAIIKNVSELLSRN*NVVLVHTLREGNACADYLAKLGASGTSGWN 13
             +  ++  LN +H YAA+I ++ +LL  +  V L H+LREGNA AD+LAK+G++      
Sbjct: 1226 VVDAISKDLNSFHRYAAVIASIKDLLQLDWEVRLSHSLREGNAGADFLAKIGSANDDKLT 1285

Query: 12   FY 7
            F+
Sbjct: 1286 FW 1287


>gb|PNX93586.1| ribonuclease H, partial [Trifolium pratense]
          Length = 953

 Score =  584 bits (1505), Expect(3) = 0.0
 Identities = 295/492 (59%), Positives = 355/492 (72%)
 Frame = -2

Query: 2933 KFFHAQTIIRRKRNKIHGLFLPDGNWCIDDNILQQEAQRYFKRLFWTDSLTDNTPQ*LIH 2754
            KFFHA T+IRRKRNKIHGL LP G WC DDNIL+ EAQ++FK LF  D L+ N+     +
Sbjct: 409  KFFHATTVIRRKRNKIHGLHLPCGMWCTDDNILKDEAQKFFKNLFGADPLSRNSNPTNEN 468

Query: 2753 ITTPRLDDHAVLALTQPVTHEEVRKALNTMHAYKSHGPDGFQGIFFKQYWHLIGNDVCNL 2574
            +T+P+L + AV  L++ VT EE                          YWH++G DV NL
Sbjct: 469  VTSPKLSEEAVECLSKTVTREE--------------------------YWHIVGEDVYNL 502

Query: 2573 VIKAFESGTFDPILAEIFLGFTQGIHRRPQXXXXXXXXXXXISKVDSPRTFKDFRPISLC 2394
            V +AF SGTF+  + E  +                        KVD P+ FK+FRPISLC
Sbjct: 503  VCQAFASGTFNSCIGETLIALIP--------------------KVDYPQNFKEFRPISLC 542

Query: 2393 NTIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVLQEALHSMHXXXXXKGGV 2214
            NTIYKLITK+LVNR+RP L+QIIGPYQS FLPGRGTCDNAIVLQE +HSM      KG V
Sbjct: 543  NTIYKLITKVLVNRLRPYLDQIIGPYQSSFLPGRGTCDNAIVLQEVIHSMKKSKKKKGDV 602

Query: 2213 AYKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSSLSLIWNGKRLPSFSPNR 2034
             YKIDLEKAYDHVNW+FLRSCL++FGFP  TI LIMHCVS+SSLSLIWNG+RLPSFSP R
Sbjct: 603  VYKIDLEKAYDHVNWEFLRSCLIQFGFPPITITLIMHCVSASSLSLIWNGQRLPSFSPTR 662

Query: 2033 GLRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGPALSHLFFADDVLLFSKA 1854
            GLRQGDPLSPYLFVICME L++AIL  V +  WKPV +S+ GP LSHLFFADDVLLFSKA
Sbjct: 663  GLRQGDPLSPYLFVICMESLSHAILQAVDNNAWKPVSISRNGPGLSHLFFADDVLLFSKA 722

Query: 1853 TRSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDSIVTITGIRSAVSFDKYL 1674
            T SQA+++  I  +FA  SGL+VN+ KSRA FS +T + K+DSIV+ITGI++  S +KYL
Sbjct: 723  TVSQATVIEGILTKFANLSGLRVNIQKSRAFFSATTRQNKIDSIVSITGIQNTNSLEKYL 782

Query: 1673 GFPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAKSVLNSIPIYYMQVAWIP 1494
            GFP+I GR+ K D++F +DKIQ RLASWKNKLL +AGRL L +SVL SIP YYMQ+ W+P
Sbjct: 783  GFPIIHGRLCKRDYDFFIDKIQHRLASWKNKLLNKAGRLALVQSVLTSIPTYYMQLNWLP 842

Query: 1493 QSICTRIDNLTR 1458
             SIC  +D ++R
Sbjct: 843  SSICDYMDRISR 854



 Score =  501 bits (1291), Expect(3) = 0.0
 Identities = 227/369 (61%), Positives = 296/369 (80%)
 Frame = -1

Query: 4038 FFSIFLMIGFQDVSLLSWNIWGAHNSKAKRHLMDLIRKFKPTILIIMETHIAFARTVAFW 3859
            + ++FLM+GF+DVS+LSWNIWGA N  A+RHLMDLIR+  PT LIIMETH AF +T++FW
Sbjct: 41   YLNLFLMLGFKDVSMLSWNIWGALNKTAQRHLMDLIRRHSPTFLIIMETHGAFEKTISFW 100

Query: 3858 TRAGYSSVAVVEPRGLSGGLWILRQNGSNVSISIFDVFADTITIKLKVGDDSWLFTGVYA 3679
             +AGY+ VA+V+ RG SGGLWIL+ N S +  S+ D+F DT+T+K+ VG+DSWL TG+YA
Sbjct: 101  NKAGYNKVAIVDARGQSGGLWILKHNSSTIITSVEDIFHDTVTLKVSVGNDSWLLTGMYA 160

Query: 3678 SPVYTNRLQLWDHLISLHDHVTEPWLLMGDFNEILLPSEQRGGNIYQNRADDFLRVLDAC 3499
            SP+YT RL+LW HLISL+ +   PW+++GDFNEI+LP+EQ+GGN  QNRAD  LRV++ C
Sbjct: 161  SPIYTKRLELWQHLISLNANFVGPWMVIGDFNEIILPNEQKGGNFSQNRADALLRVVEEC 220

Query: 3498 SLTDMPSTGGNFTWNRPCRGQRRVSKKLDRAVASITWRHLFSEAFVEVLCRHHSDHNPIL 3319
               D+ +TG  +TW R C GQRR+ KKLDR +A++ W+  F EA+VEVLCR HSDH+P+L
Sbjct: 221  QFVDIATTGNKYTWARNCMGQRRIFKKLDRGIANLPWQLAFPEAYVEVLCRLHSDHHPLL 280

Query: 3318 VRCGGLPQNRGVRPFRFEAAWITHPEYQDVVKRARSIENSDPVLALHRVKEESIIFNNEI 3139
            +RCG LPQ RG RPFRFEAAWITHPEYQ+VV+ A S     P+  L++VK +S+IFN+ +
Sbjct: 281  LRCGQLPQRRGPRPFRFEAAWITHPEYQNVVQTAWSQTTPCPIAGLNQVKTDSLIFNSNV 340

Query: 3138 FGSIWKRKNALERRLEGVQKALDRIDSARLVYLEHQLQKNYDTIPAQEELHWYQKSREKW 2959
            FG+I  +K+ LE+R++G+Q +L+R+DSARLVYLEH LQ  YD I AQEEL WYQKSR+KW
Sbjct: 341  FGNIRHQKHILEKRIKGIQLSLERVDSARLVYLEHDLQLQYDRILAQEELLWYQKSRDKW 400

Query: 2958 IQLGDRNTK 2932
            I+LGDRNTK
Sbjct: 401  IKLGDRNTK 409



 Score = 85.5 bits (210), Expect(3) = 0.0
 Identities = 36/59 (61%), Positives = 48/59 (81%)
 Frame = -3

Query: 1462 LDRDFIWKGSQDKGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKL 1286
            + R F+W+G+ D+GI+LVGW+ I + K +GGLGIR ARE+NTAMLGKLVWD+H   +KL
Sbjct: 852  ISRKFLWRGTNDRGIHLVGWEKIAQPKKNGGLGIRSARESNTAMLGKLVWDIHSKKDKL 910


>gb|PNY15195.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1142

 Score =  570 bits (1469), Expect(3) = 0.0
 Identities = 284/493 (57%), Positives = 356/493 (72%)
 Frame = -2

Query: 2933 KFFHAQTIIRRKRNKIHGLFLPDGNWCIDDNILQQEAQRYFKRLFWTDSLTDNTPQ*LIH 2754
            KFFH +TIIRRKRNKIHGL LP+G WC DD IL+QEAQ YFK  F + +   +     + 
Sbjct: 304  KFFHTKTIIRRKRNKIHGLHLPNGIWCNDDTILRQEAQTYFKNFFCSQTPLASGELNGLP 363

Query: 2753 ITTPRLDDHAVLALTQPVTHEEVRKALNTMHAYKSHGPDGFQGIFFKQYWHLIGNDVCNL 2574
            +  P L++ A  +L+  VT +EV +ALN MH +K+ GPDGFQGIFFKQYWH++G+DV  +
Sbjct: 364  LA-PILNEEAYQSLSSQVTRDEVTQALNQMHPFKAPGPDGFQGIFFKQYWHIVGDDVVRI 422

Query: 2573 VIKAFESGTFDPILAEIFLGFTQGIHRRPQXXXXXXXXXXXISKVDSPRTFKDFRPISLC 2394
            +  AF++G+F P ++E  +                        KVD P  FK+ RPISLC
Sbjct: 423  ISTAFDTGSFHPSISETLIALIP--------------------KVDCPNNFKELRPISLC 462

Query: 2393 NTIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVLQEALHSMHXXXXXKGGV 2214
            NT+YKLITKI+VNR+RP L QI+GP+QS FLPG+GT DNAI+LQEA+HSM      KG +
Sbjct: 463  NTVYKLITKIMVNRLRPHLNQIVGPFQSSFLPGKGTTDNAIILQEAIHSMRKSKRKKGDM 522

Query: 2213 AYKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSSLSLIWNGKRLPSFSPNR 2034
             +KIDLEKAYD+VNW+FL  CL   GFP   IKLIM CVSSSS+S++WNG+RLP+F+P +
Sbjct: 523  VFKIDLEKAYDNVNWEFLEFCLQRNGFPPTIIKLIMFCVSSSSMSIMWNGRRLPNFTPTK 582

Query: 2033 GLRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGPALSHLFFADDVLLFSKA 1854
            GLRQGDPLSPYLFV+CME L+  I+  V D  WKPV+LS+ GP LSHLFFADDVLLF+KA
Sbjct: 583  GLRQGDPLSPYLFVLCMECLSQVIIKAVNDGLWKPVRLSRNGPPLSHLFFADDVLLFAKA 642

Query: 1853 TRSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDSIVTITGIRSAVSFDKYL 1674
            T+SQA  VA     FA+ SGL+VN  KS+  FS ST R K+ SIVT TGI    S +KYL
Sbjct: 643  TKSQALNVATTLTHFASFSGLKVNATKSKVFFSSSTKRGKMTSIVTSTGISRTHSLEKYL 702

Query: 1673 GFPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAKSVLNSIPIYYMQVAWIP 1494
            GFPM+ GR+ + D+EF+ +KI  RLASW++ LL +AGR+TL KSVLNSIP YYMQVAW+P
Sbjct: 703  GFPMMHGRLQRKDYEFLEEKISHRLASWQHNLLNKAGRMTLVKSVLNSIPNYYMQVAWLP 762

Query: 1493 QSICTRIDNLTRS 1455
            QS C  ID + R+
Sbjct: 763  QSTCETIDRMARN 775



 Score =  391 bits (1004), Expect(3) = 0.0
 Identities = 176/299 (58%), Positives = 232/299 (77%)
 Frame = -1

Query: 3828 VEPRGLSGGLWILRQNGSNVSISIFDVFADTITIKLKVGDDSWLFTGVYASPVYTNRLQL 3649
            V+ RG SGG+WIL+Q GSN+   + +VF DTITIKL +G+  W  TG+YASP YT+RL+L
Sbjct: 6    VDARGHSGGIWILKQIGSNIVSVVHEVFMDTITIKLSLGNSYWFLTGIYASPTYTSRLEL 65

Query: 3648 WDHLISLHDHVTEPWLLMGDFNEILLPSEQRGGNIYQNRADDFLRVLDACSLTDMPSTGG 3469
            W+HLI L  ++ +PWLLMGDFNEI+ PSEQ+GGN   +RA   L V+D C+L D+  TGG
Sbjct: 66   WNHLIDLKKNINKPWLLMGDFNEIVHPSEQKGGNFSHSRAATLLNVMDKCNLVDIGMTGG 125

Query: 3468 NFTWNRPCRGQRRVSKKLDRAVASITWRHLFSEAFVEVLCRHHSDHNPILVRCGGLPQNR 3289
            +FTWNRPC G R V ++LDRA+A ++WR  FS+A+VEVLC+ HSDHNP+++RCG    N 
Sbjct: 126  SFTWNRPCTGNRMVYRRLDRALADVSWRMAFSDAYVEVLCKFHSDHNPLILRCGIPLHND 185

Query: 3288 GVRPFRFEAAWITHPEYQDVVKRARSIENSDPVLALHRVKEESIIFNNEIFGSIWKRKNA 3109
            G RPFRFEAAWITHP Y D+V+ A      + +  LH V+++S+ FN EIFG+I KRKN 
Sbjct: 186  GPRPFRFEAAWITHPNYSDIVQTAWGKSPDNFISCLHNVQQDSLRFNTEIFGNIRKRKNQ 245

Query: 3108 LERRLEGVQKALDRIDSARLVYLEHQLQKNYDTIPAQEELHWYQKSREKWIQLGDRNTK 2932
            +ERRL+G+Q+ L+RIDSARL+Y++ +LQ+ YDTI  QEE+HWYQK+R+ WI+LGDRNTK
Sbjct: 246  IERRLKGIQQTLERIDSARLIYIQRELQQEYDTILGQEEIHWYQKARDDWIKLGDRNTK 304



 Score =  310 bits (795), Expect(3) = 0.0
 Identities = 152/381 (39%), Positives = 220/381 (57%), Gaps = 12/381 (3%)
 Frame = -3

Query: 1456 RDFIWKGSQDKGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKLWCH 1277
            R+F+WKG+   G++LV WD IT+ K  GGLGIR +RE NTA+LGKLVW +H+  + LW  
Sbjct: 774  RNFLWKGNSSTGVHLVSWDKITRPKKLGGLGIRKSREANTALLGKLVWSIHQNCDSLWVQ 833

Query: 1276 VLAEKYMGLSSILEVSKKNGSLTWNSIMKARGVLKDGYDFRLGNGESSFWYDNWTPYGKL 1097
            VL  KY+   S + ++KK GS+TWN+IMKA   L+DG++FRLGNG SSFW+ NW+  GKL
Sbjct: 834  VLKHKYINNGSFITMTKKPGSVTWNAIMKALLALRDGFEFRLGNGNSSFWFSNWSGTGKL 893

Query: 1096 SALVPFVDIHDTQLSIKDIVHDDSWQLQRLYTNIPQYVSDYIQAIQPCLNPTIDDGYTWK 917
            +  V +VDIHD ++S+KD+  D +W    LYTNIP  V+D+++ I  CLN  + D YTWK
Sbjct: 894  ADKVLYVDIHDLEMSVKDVYTDGNWNFNMLYTNIPTAVTDHLKMIPVCLNSQVADCYTWK 953

Query: 916  GSLDGVYTTKSGFKWIVDKRQQVTDVRTILSWLWIWRLPVSEKIRFFFWTACHNTLP--- 746
            G+L+G+Y+ + G+ W+        D  +I SW W+W +   EK++FF WTA HN+LP   
Sbjct: 954  GNLNGIYSARDGYFWLNRNEFAGNDTDSI-SWTWLWNISAPEKLKFFLWTALHNSLPTRE 1012

Query: 745  -------FTVPNCQRCGCAIEDFLHCIRDCPVPRQIWFILGFCDPAFYQVTNSIDWLLAG 587
                       +C RC   IE  LHC+RDC    ++W  +GF D +FY+  +  +WL  G
Sbjct: 1013 MLCHRNMLQANHCPRCNQEIETTLHCLRDCDFAIRLWHSIGFTDQSFYRENDLYNWLRIG 1072

Query: 586  AKSTVPQIFFSLLRYXXXXXXXXXXXIAYPS**SHRTRILLLHDRVR--GLSLGTQRKTV 413
             +     +F + + +                    R  + L ++ V    L + T+    
Sbjct: 1073 IQGKSVFMFLAAVWWLWRA----------------RNLLCLANELVSLITLRMWTENYAH 1116

Query: 412  MLF*MLMVAA*QPGSSWVWWN 350
            +LF      A  P + WV WN
Sbjct: 1117 LLFRCFFKQATVPDTKWVRWN 1137


>dbj|GAU51664.1| hypothetical protein TSUD_268670 [Trifolium subterraneum]
          Length = 1231

 Score =  543 bits (1399), Expect(3) = 0.0
 Identities = 270/477 (56%), Positives = 346/477 (72%), Gaps = 3/477 (0%)
 Frame = -2

Query: 2930 FFHAQTIIRRKRNKIHGLFLPDGNWCIDDNILQQEAQRYFKRLFWTDSLTDNTPQ*LIHI 2751
            FFHAQTIIRRKRN+IH L LP+G W  D +ILQQEAQ Y+K +F+++   ++TP      
Sbjct: 391  FFHAQTIIRRKRNRIHRLQLPNGIWTSDSSILQQEAQHYYKNVFYSNQ-HNHTPS----F 445

Query: 2750 TT---PRLDDHAVLALTQPVTHEEVRKALNTMHAYKSHGPDGFQGIFFKQYWHLIGNDVC 2580
            TT   P +DD    +LT+PVT EEV  ALN+M  YK+ GPDGFQ IFFKQYWH++G+D+ 
Sbjct: 446  TTGSHPIIDDLGKTSLTRPVTKEEVTIALNSMKPYKAPGPDGFQCIFFKQYWHIVGDDIF 505

Query: 2579 NLVIKAFESGTFDPILAEIFLGFTQGIHRRPQXXXXXXXXXXXISKVDSPRTFKDFRPIS 2400
            NLV  AF SG FDP ++E  +                        K+D P TFKDFRPIS
Sbjct: 506  NLVKSAFHSGYFDPTISETLIALIP--------------------KIDPPSTFKDFRPIS 545

Query: 2399 LCNTIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVLQEALHSMHXXXXXKG 2220
            LCN +YK+ITK+LV+R+RP+L+ IIGPYQS FL GRGT +NAIVLQE +H M      KG
Sbjct: 546  LCNIVYKIITKVLVHRLRPLLDSIIGPYQSSFLLGRGTSNNAIVLQEIIHFMRRSKKKKG 605

Query: 2219 GVAYKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSSLSLIWNGKRLPSFSP 2040
             VA+K+DLEKA+D+VNW FL+SCL +FGFP+ T +LIMHCV+SS+ S++WNG ++P F P
Sbjct: 606  YVAFKLDLEKAFDNVNWSFLQSCLQDFGFPDITTQLIMHCVTSSTYSILWNGNKMPPFKP 665

Query: 2039 NRGLRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGPALSHLFFADDVLLFS 1860
              GLRQGDPLSPYLF++CMEKL+ AI D V  R W PV +S  GP LSHL FADDVLLF+
Sbjct: 666  THGLRQGDPLSPYLFILCMEKLSVAINDAVQQRHWDPVHISDNGPHLSHLLFADDVLLFT 725

Query: 1859 KATRSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDSIVTITGIRSAVSFDK 1680
            KA  S    + N+F+ F+ ASGL++N++KSRA +S  T   K+  + +I+GIRS  S DK
Sbjct: 726  KAKNSHIRFITNLFERFSNASGLKINLSKSRAFYSIGTPSTKITKLTSISGIRSTTSLDK 785

Query: 1679 YLGFPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAKSVLNSIPIYYMQ 1509
            YLGFP+++GR  ++DF F+++K+QSRLASWKN+LL + GRL LA SVL+SIP YYMQ
Sbjct: 786  YLGFPILKGRAKRSDFHFIINKMQSRLASWKNRLLNKPGRLALASSVLSSIPNYYMQ 842



 Score =  375 bits (962), Expect(3) = 0.0
 Identities = 185/383 (48%), Positives = 259/383 (67%), Gaps = 1/383 (0%)
 Frame = -1

Query: 4080 IRTLWYNSVSTL-GPFFSIFLMIGFQDVSLLSWNIWGAHNSKAKRHLMDLIRKFKPTILI 3904
            +R +W  S+  L  PF   F+M    D S+LSWNI GA N+ A+RH+ ++IRK+ PT L+
Sbjct: 7    MRRIWSLSLFYLFRPFSFRFVMEALFDTSILSWNIRGAQNNNARRHMKEVIRKYHPTFLV 66

Query: 3903 IMETHIAFARTVAFWTRAGYSSVAVVEPRGLSGGLWILRQNGSNVSISIFDVFADTITIK 3724
            I+ETH+ +AR   FW   GY+   ++E  G SGG+W+L+   +N++++I D    +IT  
Sbjct: 67   ILETHVPYARLSTFWMNNGYTPAHIIEANGHSGGIWLLQHFAANITLTITDSNQYSITFT 126

Query: 3723 LKVGDDSWLFTGVYASPVYTNRLQLWDHLISLHDHVTEPWLLMGDFNEILLPSEQRGGNI 3544
            +  GD S   T VYASP  + R   W++LI LH  +  PW+L+GDFNE L PS+QRGG  
Sbjct: 127  VNRGDASTTCTCVYASPNPSLRTNFWNYLIHLHHSIVGPWMLIGDFNETLSPSDQRGGVF 186

Query: 3543 YQNRADDFLRVLDACSLTDMPSTGGNFTWNRPCRGQRRVSKKLDRAVASITWRHLFSEAF 3364
              +RA  F   +D+C+L D+ +TG NFTW+R   G R +SKKLDR +A++ WR  F EAF
Sbjct: 187  QHSRAVVFANFMDSCNLFDLTTTGSNFTWHRNHNGFRILSKKLDRGLANVEWRLAFPEAF 246

Query: 3363 VEVLCRHHSDHNPILVRCGGLPQNRGVRPFRFEAAWITHPEYQDVVKRARSIENSDPVLA 3184
            VE+LCR HSDHNP+L+R GGLP   G RPFRFEAAWI H +Y  +V +A    N + V+A
Sbjct: 247  VEILCRFHSDHNPLLLRFGGLPLASGPRPFRFEAAWIDHKDYSALVDQAWKSSNHNIVIA 306

Query: 3183 LHRVKEESIIFNNEIFGSIWKRKNALERRLEGVQKALDRIDSARLVYLEHQLQKNYDTIP 3004
            L+ V+ +SI FN+E+FG+I+KRK  +E RL+G+Q  L+R+DS   V LE +LQ+ Y+ I 
Sbjct: 307  LNNVRLDSISFNHEVFGNIFKRKRHIESRLKGIQIYLERVDSLHHVLLEKELQREYNHIL 366

Query: 3003 AQEELHWYQKSREKWIQLGDRNT 2935
             QEE+  YQKSRE+W + GD+N+
Sbjct: 367  FQEEMLSYQKSREQWAKFGDKNS 389



 Score =  213 bits (541), Expect(3) = 0.0
 Identities = 98/209 (46%), Positives = 139/209 (66%), Gaps = 1/209 (0%)
 Frame = -3

Query: 1426 KGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKLWCHVLAEKYMGLS 1247
            +GI+LVGWD I + K+ GGLGIR ARE N  +LGKLVWD+ + +NKLW ++L++KY   S
Sbjct: 842  QGIHLVGWDKIARPKIQGGLGIRPAREANICLLGKLVWDMVQSSNKLWVNLLSKKYTTGS 901

Query: 1246 SILEVSK-KNGSLTWNSIMKARGVLKDGYDFRLGNGESSFWYDNWTPYGKLSALVPFVDI 1070
            +IL+ S   N S  W+SI++A+ +LKDG+ +R G+G SSFW+  W+  G L  LVP+VDI
Sbjct: 902  TILQASSLSNASPIWSSIIRAKNILKDGFTWRAGSGSSSFWFSPWSSLGYLGTLVPYVDI 961

Query: 1069 HDTQLSIKDIVHDDSWQLQRLYTNIPQYVSDYIQAIQPCLNPTIDDGYTWKGSLDGVYTT 890
            HD  L++KD++  +S   Q LYT +P   SD I  +    N +IDD + W  + +G YTT
Sbjct: 962  HDLHLTVKDVLASNSPHSQILYTQLPPSASDLINNLNIRFNDSIDDVFIWSNNKNGSYTT 1021

Query: 889  KSGFKWIVDKRQQVTDVRTILSWLWIWRL 803
            KSG+ W++ +    T     LSW WIW+L
Sbjct: 1022 KSGYSWLLSQNGSATTPSLPLSWTWIWKL 1050



 Score = 99.8 bits (247), Expect(2) = 3e-20
 Identities = 54/124 (43%), Positives = 81/124 (65%), Gaps = 1/124 (0%)
 Frame = -1

Query: 369  QAGFGGILRTNEGKWIRGFSDNI-GFSNSLHAKLLGLYRGLSFTWDQGYCLVKCYSDSAL 193
            +AGFGG++R   G ++ GFS  I G S+ L A+L  +Y+GL+   +     + CYSD   
Sbjct: 1088 RAGFGGVIRNESGFYLSGFSGFIQGSSDILLAELFAIYKGLTLAKNMAIDELVCYSDYLH 1147

Query: 192  SIHLVT*PLNKWHFYAAIIKNVSELLSRN*NVVLVHTLREGNACADYLAKLGASGTSGWN 13
             I+L+  P  K+H YA +I+++ EL+S++ N+ L HTLREGN CA++LAKLGAS  S   
Sbjct: 1148 CINLIKGPSIKYHVYAVLIQDIKELMSQS-NITLCHTLREGNNCANFLAKLGASLDSDLT 1206

Query: 12   FYAT 1
             +A+
Sbjct: 1207 IHAS 1210



 Score = 31.2 bits (69), Expect(2) = 3e-20
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -2

Query: 449  ERSVTWHPEKDCDVILNVDGSCLATWVKLG 360
            E  V W+      VILNVDGSCL + V+ G
Sbjct: 1061 EIHVKWNNNNFSGVILNVDGSCLGSSVRAG 1090


>gb|PNX93226.1| ribonuclease H, partial [Trifolium pratense]
          Length = 851

 Score =  606 bits (1562), Expect(3) = 0.0
 Identities = 300/492 (60%), Positives = 365/492 (74%)
 Frame = -2

Query: 2933 KFFHAQTIIRRKRNKIHGLFLPDGNWCIDDNILQQEAQRYFKRLFWTDSLTDNTPQ*LIH 2754
            KFFHAQTIIRRKRNKIHGL LP G WC DD ILQ+EA  +FK LF   S        + H
Sbjct: 314  KFFHAQTIIRRKRNKIHGLTLPCGAWCTDDIILQEEANNFFKNLFAPISNNQTIVFDIDH 373

Query: 2753 ITTPRLDDHAVLALTQPVTHEEVRKALNTMHAYKSHGPDGFQGIFFKQYWHLIGNDVCNL 2574
            +  P+L++     L Q ++ EEV  ALN MH  K+ GPDGFQG+FF++YWH+IG D+ NL
Sbjct: 374  V--PKLNEDQASTLLQQISKEEVLAALNQMHPLKAPGPDGFQGVFFRRYWHIIGEDIYNL 431

Query: 2573 VIKAFESGTFDPILAEIFLGFTQGIHRRPQXXXXXXXXXXXISKVDSPRTFKDFRPISLC 2394
            V +AF +G F+P LAE  +                      I K+D P+ FKDFRPISLC
Sbjct: 432  VSQAFNTGYFNPSLAETLI--------------------CLIPKIDCPKHFKDFRPISLC 471

Query: 2393 NTIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVLQEALHSMHXXXXXKGGV 2214
            NT+YKLITK+LVNR+RP+L+ IIGP+QS FLPGRGTCDNAI+LQE +H M+     KG V
Sbjct: 472  NTLYKLITKVLVNRLRPMLDSIIGPFQSSFLPGRGTCDNAIILQEIIHHMNKSKSKKGDV 531

Query: 2213 AYKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSSLSLIWNGKRLPSFSPNR 2034
            A+KIDLEKAYD+VNW++LRSCL++FGFP   IKLIMHCVSSSSLSLIWNGKRLP+F+P R
Sbjct: 532  AFKIDLEKAYDNVNWNYLRSCLLDFGFPPIIIKLIMHCVSSSSLSLIWNGKRLPNFTPTR 591

Query: 2033 GLRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGPALSHLFFADDVLLFSKA 1854
            GLRQGDPLSPYLFVICMEKL+ AI + V    W PV++SK GP  SHLFFADDVLLFSKA
Sbjct: 592  GLRQGDPLSPYLFVICMEKLSLAISEAVQKNSWSPVQISKNGPRFSHLFFADDVLLFSKA 651

Query: 1853 TRSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDSIVTITGIRSAVSFDKYL 1674
            T +Q   +AN+F  F+ ASGL++N  KSR LFSK   R+K D I  ++ IRS  S   YL
Sbjct: 652  TCAQGRTIANLFNSFSIASGLKINCVKSRVLFSKGVPRSKRDKITNLSSIRSTNSLGNYL 711

Query: 1673 GFPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAKSVLNSIPIYYMQVAWIP 1494
            GFPM+ GR+ K DF F++DK+ SRLASWKNKLL + GR+TLAKSV+NSIP YYMQ++W+P
Sbjct: 712  GFPMVTGRVKKADFAFIIDKLNSRLASWKNKLLSKPGRVTLAKSVMNSIPTYYMQISWLP 771

Query: 1493 QSICTRIDNLTR 1458
             SIC++ID +TR
Sbjct: 772  SSICSQIDMMTR 783



 Score =  391 bits (1004), Expect(3) = 0.0
 Identities = 174/311 (55%), Positives = 234/311 (75%)
 Frame = -1

Query: 3864 FWTRAGYSSVAVVEPRGLSGGLWILRQNGSNVSISIFDVFADTITIKLKVGDDSWLFTGV 3685
            FW R GYS VA+V+ +G SGG+WIL+Q+G+N  + + D+  + IT  + +G D W  TG+
Sbjct: 4    FWERQGYSEVAIVDAQGHSGGVWILKQDGNNFDVQVEDIHMNAITFSISLGTDKWYCTGL 63

Query: 3684 YASPVYTNRLQLWDHLISLHDHVTEPWLLMGDFNEILLPSEQRGGNIYQNRADDFLRVLD 3505
            YASP  + R+  W +L  L+  ++  WLLMGDFNEI+ P EQRGGN +QNRAD  + V+D
Sbjct: 64   YASPTPSTRVNFWHYLCHLNSTISGAWLLMGDFNEIIAPGEQRGGNFHQNRADGLISVMD 123

Query: 3504 ACSLTDMPSTGGNFTWNRPCRGQRRVSKKLDRAVASITWRHLFSEAFVEVLCRHHSDHNP 3325
             C+L D+   GG FTW+R CRGQR ++KKLDR +A+++WR  F EAF+E LCR +SDHNP
Sbjct: 124  NCNLIDLNCVGGKFTWHRNCRGQRSIAKKLDRGMANLSWRLSFPEAFLETLCRSNSDHNP 183

Query: 3324 ILVRCGGLPQNRGVRPFRFEAAWITHPEYQDVVKRARSIENSDPVLALHRVKEESIIFNN 3145
            IL+RCGGLP  RG +PFRFEAAW++H EY+ V+K A S E   PV AL+ +KE+SIIFN 
Sbjct: 184  ILLRCGGLPIARGAKPFRFEAAWMSHSEYEQVIKNAWSKERGAPVAALNAIKEDSIIFNK 243

Query: 3144 EIFGSIWKRKNALERRLEGVQKALDRIDSARLVYLEHQLQKNYDTIPAQEELHWYQKSRE 2965
            E+FG+I++RK  LE RL G+Q++++R+DSARL+ LEHQLQ+  D +  QEEL WYQKSRE
Sbjct: 244  EVFGNIFQRKRNLENRLRGIQRSMERVDSARLIMLEHQLQEELDKVLYQEELLWYQKSRE 303

Query: 2964 KWIQLGDRNTK 2932
            KW++ GD+NTK
Sbjct: 304  KWVKFGDKNTK 314



 Score = 95.9 bits (237), Expect(3) = 0.0
 Identities = 41/69 (59%), Positives = 56/69 (81%)
 Frame = -3

Query: 1462 LDRDFIWKGSQDKGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKLW 1283
            + R FIWKG+ +KGI+LVGW+ +TK+K  GGLG+R+ARE NTAMLGKLVW L + ++K W
Sbjct: 781  MTRKFIWKGNSNKGIHLVGWNVVTKSKEDGGLGVRLAREANTAMLGKLVWGLQQQSDKPW 840

Query: 1282 CHVLAEKYM 1256
             H+L +KY+
Sbjct: 841  VHMLQDKYL 849


>gb|PNX92520.1| ribonuclease H, partial [Trifolium pratense]
          Length = 865

 Score =  611 bits (1576), Expect(3) = 0.0
 Identities = 301/494 (60%), Positives = 376/494 (76%), Gaps = 1/494 (0%)
 Frame = -2

Query: 2933 KFFHAQTIIRRKRNKIHGLFLPDGNWCIDDNILQQEAQRYFKRLFWTDSLTDNTPQ*LIH 2754
            KFFHAQT+IRRKRNKIHG+ LP G WC DD ILQ+EA++ FK LF   +  +N+P     
Sbjct: 293  KFFHAQTVIRRKRNKIHGITLPCGAWCTDDTILQEEAKKIFKNLF---APPNNSPHCSFD 349

Query: 2753 ITT-PRLDDHAVLALTQPVTHEEVRKALNTMHAYKSHGPDGFQGIFFKQYWHLIGNDVCN 2577
            +   P+LD   V  L   V+ EEV  ALN MH  K+ GPDGFQG+FF+QYWH++GND+C+
Sbjct: 350  VAVVPKLDAEQVQTLLHHVSKEEVFIALNQMHPLKAPGPDGFQGVFFRQYWHILGNDICD 409

Query: 2576 LVIKAFESGTFDPILAEIFLGFTQGIHRRPQXXXXXXXXXXXISKVDSPRTFKDFRPISL 2397
            +V +AF +G F+P LAE  +                      I K D P+ FKDFRPISL
Sbjct: 410  MVSEAFATGQFNPSLAETLI--------------------CLIPKEDCPKHFKDFRPISL 449

Query: 2396 CNTIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVLQEALHSMHXXXXXKGG 2217
            CNT+YKLITKILVNR+RP+L+ I+GP+QS FLPGRGT DNAI+LQE +++M+     KG 
Sbjct: 450  CNTLYKLITKILVNRLRPMLDSIVGPFQSSFLPGRGTSDNAIILQEVIYNMNKSKAKKGD 509

Query: 2216 VAYKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSSLSLIWNGKRLPSFSPN 2037
            VAYKIDLEKAYD+V+W++LRSCL +FGFP  TIKLIMHCV SS+LSLIWNG+RLPSFSP 
Sbjct: 510  VAYKIDLEKAYDNVDWNYLRSCLHDFGFPPLTIKLIMHCVCSSTLSLIWNGQRLPSFSPT 569

Query: 2036 RGLRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGPALSHLFFADDVLLFSK 1857
            RGLRQGDPLSPYLFV+CMEKL+ AI + V +  WKP+++SK GP  SHLFFADDVLLFSK
Sbjct: 570  RGLRQGDPLSPYLFVLCMEKLSLAISEAVQNNSWKPIQISKNGPRFSHLFFADDVLLFSK 629

Query: 1856 ATRSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDSIVTITGIRSAVSFDKY 1677
            AT SQ  ++AN+F  F+ ASGL++N AKSRALFSK   R K+D + +++GIRS  +  KY
Sbjct: 630  ATCSQGRIMANLFNNFSKASGLKINCAKSRALFSKGVPRRKMDKLTSLSGIRSTNALGKY 689

Query: 1676 LGFPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAKSVLNSIPIYYMQVAWI 1497
            LGFPMI GR+ K+D+ F++DK+ SRLASWKNK L + GR+TLAKSVLNSIP YYMQ++W+
Sbjct: 690  LGFPMITGRVRKDDYHFILDKLNSRLASWKNKFLNKPGRVTLAKSVLNSIPTYYMQISWL 749

Query: 1496 PQSICTRIDNLTRS 1455
            P SIC++ID LTR+
Sbjct: 750  PSSICSQIDQLTRN 763



 Score =  337 bits (864), Expect(3) = 0.0
 Identities = 171/363 (47%), Positives = 223/363 (61%)
 Frame = -1

Query: 4020 MIGFQDVSLLSWNIWGAHNSKAKRHLMDLIRKFKPTILIIMETHIAFARTVAFWTRAGYS 3841
            MI F+DVS+LSWN+ GA+N K K                                    S
Sbjct: 1    MIMFKDVSILSWNVRGANNPKTK------------------------------------S 24

Query: 3840 SVAVVEPRGLSGGLWILRQNGSNVSISIFDVFADTITIKLKVGDDSWLFTGVYASPVYTN 3661
             VAVV+ +G SGG+WIL+Q G N  + + DV+ +TITI +  G                 
Sbjct: 25   EVAVVDAQGQSGGVWILKQIGVNFDVHVVDVYLNTITISIATG----------------- 67

Query: 3660 RLQLWDHLISLHDHVTEPWLLMGDFNEILLPSEQRGGNIYQNRADDFLRVLDACSLTDMP 3481
                             PW +MGDFNEI+ P EQRGGN + NRA     V++ C+L D+ 
Sbjct: 68   -----------------PWCIMGDFNEIIAPGEQRGGNFHPNRAAGLSSVMNHCNLLDLN 110

Query: 3480 STGGNFTWNRPCRGQRRVSKKLDRAVASITWRHLFSEAFVEVLCRHHSDHNPILVRCGGL 3301
            S GG FTW+R CRGQR +SKKLDR +A++TWR  F EAF+E LCR +SDHNPIL+RCGGL
Sbjct: 111  SVGGKFTWHRNCRGQRSISKKLDRGMANVTWRLNFPEAFLETLCRVNSDHNPILLRCGGL 170

Query: 3300 PQNRGVRPFRFEAAWITHPEYQDVVKRARSIENSDPVLALHRVKEESIIFNNEIFGSIWK 3121
            P  RG RPFRFEAAWI+H +Y+ +VK A + E   P+  L+ ++E+SI+FN E+FG+I+K
Sbjct: 171  PIARGARPFRFEAAWISHSDYEQLVKNAWTRERGLPIAGLNTIREDSILFNKEVFGNIFK 230

Query: 3120 RKNALERRLEGVQKALDRIDSARLVYLEHQLQKNYDTIPAQEELHWYQKSREKWIQLGDR 2941
            +K  LE RL G+Q+ ++R+DS RL+ LE QLQK  D +  QEEL W+QKSREKWI+ GDR
Sbjct: 231  KKRKLENRLNGIQRVMERVDSTRLILLEQQLQKELDDVLYQEELLWFQKSREKWIKFGDR 290

Query: 2940 NTK 2932
            NTK
Sbjct: 291  NTK 293



 Score =  127 bits (319), Expect(3) = 0.0
 Identities = 57/106 (53%), Positives = 77/106 (72%)
 Frame = -3

Query: 1462 LDRDFIWKGSQDKGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKLW 1283
            L R+FIWKG+ + GI+LVGW SIT+TK  GGLG+R+ARETNTAMLGKLVWD+ + +NK W
Sbjct: 760  LTRNFIWKGNSNNGIHLVGWQSITQTKKDGGLGVRLARETNTAMLGKLVWDIQQNSNKPW 819

Query: 1282 CHVLAEKYMGLSSILEVSKKNGSLTWNSIMKARGVLKDGYDFRLGN 1145
              ++ +KY+         +  GS  WNSI KA+  L+DGY +R+G+
Sbjct: 820  VLMIQDKYLSNKIFFSTPRSYGSPIWNSISKAKLALQDGYQYRIGD 865


>gb|KYP37151.1| Putative ribonuclease H protein At1g65750 family [Cajanus cajan]
          Length = 1560

 Score =  476 bits (1226), Expect(3) = 0.0
 Identities = 249/491 (50%), Positives = 329/491 (67%)
 Frame = -2

Query: 2930 FFHAQTIIRRKRNKIHGLFLPDGNWCIDDNILQQEAQRYFKRLFWTDSLTDNTPQ*LIHI 2751
            FFHAQT+ RR+RNKI GL LPDG+W  D  +++ EA R+FK LF  ++   + P  +   
Sbjct: 600  FFHAQTLARRRRNKIQGLLLPDGSWHTDPVVMKMEAVRFFKELFSFNNA--HGPLDMHAG 657

Query: 2750 TTPRLDDHAVLALTQPVTHEEVRKALNTMHAYKSHGPDGFQGIFFKQYWHLIGNDVCNLV 2571
              P L   A  ALT PVT EEVR+A+ +M ++K+ GPDGFQ  FFKQYW ++G+++   V
Sbjct: 658  VPPGLGGEAQSALTAPVTREEVRRAVMSMKSFKAPGPDGFQPFFFKQYWPIVGDELWRTV 717

Query: 2570 IKAFESGTFDPILAEIFLGFTQGIHRRPQXXXXXXXXXXXISKVDSPRTFKDFRPISLCN 2391
              AF+ G  D  L E     TQ +                I KVD P + KDFRPISLCN
Sbjct: 718  KDAFQLGYSDISLLE-----TQMV---------------LIPKVDHPVSLKDFRPISLCN 757

Query: 2390 TIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVLQEALHSMHXXXXXKGGVA 2211
              +K+I+K+LV R+RP L+ +IGP+Q  F+PGRGT D++I+ QEA H +       G +A
Sbjct: 758  VAWKVISKVLVARLRPFLQDVIGPFQGSFIPGRGTRDHSIIAQEAFHFVRKEGSRVGSLA 817

Query: 2210 YKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSSLSLIWNGKRLPSFSPNRG 2031
             KIDLEKAYD V WDFL S LV+FGFP  T +LIM  + +SS+SL+WNG  LPSF P+RG
Sbjct: 818  LKIDLEKAYDRVRWDFLESTLVQFGFPRITTQLIMWGLKNSSISLLWNGSTLPSFVPSRG 877

Query: 2030 LRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGPALSHLFFADDVLLFSKAT 1851
            LRQGDPLSPYLFV CME+LA  I + + +  WKP+KLS  G +LSHLFFADD+LLF +A+
Sbjct: 878  LRQGDPLSPYLFVFCMERLALRISELLQEGLWKPIKLSHGGLSLSHLFFADDILLFCQAS 937

Query: 1850 RSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDSIVTITGIRSAVSFDKYLG 1671
              QA LVA+  +EF+ ASGL+VN+AKS+ + S+  +R ++D++    GI       KYLG
Sbjct: 938  DDQAQLVASTLEEFSRASGLRVNLAKSKFVSSRKVSRRRIDTLEGFLGIGHTAQIGKYLG 997

Query: 1670 FPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAKSVLNSIPIYYMQVAWIPQ 1491
             PM  G+    DF  V+DKIQSRL +WK+KLL +AG+L L KS ++SIP+Y MQ  W+PQ
Sbjct: 998  VPMTHGQPRCADFYDVLDKIQSRLEAWKSKLLNKAGKLCLVKSTISSIPVYSMQTMWLPQ 1057

Query: 1490 SICTRIDNLTR 1458
            ++C RID   R
Sbjct: 1058 AVCNRIDQACR 1068



 Score =  300 bits (767), Expect(3) = 0.0
 Identities = 160/357 (44%), Positives = 216/357 (60%), Gaps = 2/357 (0%)
 Frame = -1

Query: 3999 SLLSWNIWGAHNSKAKRHLMDLIRKFKPTILIIMETHIAFARTVAFWTRAGYSSVAVVEP 3820
            ++LSWNI GA N+K KR + +L+R   P+I I++ETH  F+   +FW +  Y     +E 
Sbjct: 245  NILSWNIRGAVNAKGKRRVAELVRLHHPSIFIVLETHCQFSSVESFWKKLDYKLYYSIEA 304

Query: 3819 RGLSGGLWILRQNGSNVSISIFDVFADTITIKLKVGDDSWLFTGVYASPVYTNRLQLWDH 3640
               SGG+W+L        +S FD  A  I+  +  G  +W+ T VYA+P    R ++W H
Sbjct: 305  TRYSGGIWVLMAMSCTAVLSEFDSHAQAISFTVAEGSKNWVCTAVYANPRVELRQRVWAH 364

Query: 3639 LISLHDHVTEPWLLMGDFNEILLPSEQRGGNIYQNRADDFLRVLDACSLTDMPSTGGNFT 3460
            L  L   +T PWL++GDFNEILL +E RGG     RA  FL VL+ C+L DM + G  FT
Sbjct: 365  LRELGRRITLPWLVLGDFNEILLSTECRGGRFSMTRASQFLEVLNECNLLDMGAKGLRFT 424

Query: 3459 WNRPCRGQRRVSKKLDRAVASITWRHLFSEAFVEVLCRHHSDHNPILVRCGGLPQNRGVR 3280
            W R  RG   ++K+LD  V ++ W+ LF EA+VE LCR +SDH P+L+R  G       R
Sbjct: 425  WYRNQRGV-VLAKRLDCVVCNVAWQALFPEAYVENLCRIYSDHCPLLLRREGSRDKSQHR 483

Query: 3279 PFRFEAAWITHPEYQDVVKRARSIENSDPVLA--LHRVKEESIIFNNEIFGSIWKRKNAL 3106
            PFRF+AAW TH  ++ +VK A     S P LA  L  V+ ++I FN E+FG+I  RK  L
Sbjct: 484  PFRFQAAWATHKGFERIVKEA--WRRSTPTLANGLQAVRVDAIKFNQEVFGNIITRKRTL 541

Query: 3105 ERRLEGVQKALDRIDSARLVYLEHQLQKNYDTIPAQEELHWYQKSREKWIQLGDRNT 2935
            +RRLEGVQ  L+  +S RL  LE  +Q   D    QEE  W+QKSREKW++ GDRNT
Sbjct: 542  QRRLEGVQLQLEIGESERLSRLEKTIQAELDETCLQEEYLWFQKSREKWVRFGDRNT 598



 Score =  177 bits (448), Expect(3) = 0.0
 Identities = 97/299 (32%), Positives = 150/299 (50%), Gaps = 12/299 (4%)
 Frame = -3

Query: 1456 RDFIW-KGSQDKGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKLWC 1280
            R  +W K    +  +LV WD +T+ +  GGLG+R AR+ N ++LGKLVWD+     K W 
Sbjct: 1068 RRMLWAKSDNTRFWSLVRWDVVTQPQELGGLGVREARKVNVSLLGKLVWDMLTAPQKPWV 1127

Query: 1279 HVLAEKYMGLSSIL-EVSKKNGSLTWNSIMKARGVLKDGYDFRLGNGESSFWYDNWTPYG 1103
             +L++ Y+  +SIL   ++K  S TW+S++KA   L++G++  LG+G SS WY +W+  G
Sbjct: 1128 QLLSDCYLHGNSILCAPNRKGASPTWSSLIKALPYLREGFEPHLGSGASSLWYKDWSGTG 1187

Query: 1102 KLSALVPFVDIHDTQLSIKDIVHDDSWQLQRLYTNIPQYVSDYIQAIQPCLNPTIDDGYT 923
                 VPFV I DT  ++ D     +W    L+  +P  +   +Q +    +    D + 
Sbjct: 1188 LWCQKVPFVHIADTNKTVADCWVSGNWNFTALHIVLPAELLLLVQRLSVVNSSLGLDHFV 1247

Query: 922  WKGSLDGVYTTKSGFKWIVDKRQQVTDVRTILSWLWIWRLPVSEKIRFFFWTACHNTLPF 743
            W+G   G YT  SG++++      V        W   W+L + EK++FF W   H+ LP 
Sbjct: 1248 WRGDSSGCYTASSGYRFLT----TVLPTGGEDVWKKAWKLRIPEKVKFFLWQCLHSALPT 1303

Query: 742  TVPN----------CQRCGCAIEDFLHCIRDCPVPRQIWFILGFCDPAFYQVTNSIDWL 596
                          C RC C  E  LH +RDCP  R++    G     F+ V +   WL
Sbjct: 1304 NQVRADRRLAESGACSRCSCPHETILHALRDCPYSREVLLSGGISMGWFFSVMDCFQWL 1362


>gb|PNX92714.1| ribonuclease H [Trifolium pratense]
          Length = 1359

 Score =  561 bits (1446), Expect(3) = 0.0
 Identities = 281/507 (55%), Positives = 357/507 (70%), Gaps = 3/507 (0%)
 Frame = -2

Query: 2969 EKNGFNWVIATQK---FFHAQTIIRRKRNKIHGLFLPDGNWCIDDNILQQEAQRYFKRLF 2799
            +K+   WV    K   FFHAQTIIRRKRNKIH + LP G W  D +I+Q E Q++FK LF
Sbjct: 348  QKSREQWVKFGDKNSSFFHAQTIIRRKRNKIHNIQLPTGIWSSDSSIIQHETQKFFKDLF 407

Query: 2798 WTDSLTDNTPQ*LIHITTPRLDDHAVLALTQPVTHEEVRKALNTMHAYKSHGPDGFQGIF 2619
             +     N     +  T P +D      LT+ VT EEV  ALN+M  +K+ GPDGFQ IF
Sbjct: 408  CSPQSPHNHS--FVINTHPIIDADGCGNLTKDVTKEEVTLALNSMKPFKAPGPDGFQCIF 465

Query: 2618 FKQYWHLIGNDVCNLVIKAFESGTFDPILAEIFLGFTQGIHRRPQXXXXXXXXXXXISKV 2439
            FKQYWH++G+D+ NLV  AF +G FD  ++E  +                        KV
Sbjct: 466  FKQYWHIVGDDIYNLVKNAFATGHFDSKISETLIALIP--------------------KV 505

Query: 2438 DSPRTFKDFRPISLCNTIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVLQE 2259
            D P TFK+ RPISLCN +YK+ITK+LVNR+RP+L+ +IGP+QS FLPGRGT DNAIVLQE
Sbjct: 506  DPPTTFKELRPISLCNIVYKIITKVLVNRLRPMLDNLIGPFQSSFLPGRGTSDNAIVLQE 565

Query: 2258 ALHSMHXXXXXKGGVAYKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSSLS 2079
             +H M      KG VA+K+DLEKA+D+VNW FL++CL +FGFP  T  LIMHCV+SS+LS
Sbjct: 566  VVHYMRKSKKKKGDVAFKLDLEKAFDNVNWTFLKNCLNDFGFPTITTNLIMHCVTSSNLS 625

Query: 2078 LIWNGKRLPSFSPNRGLRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGPAL 1899
            ++WNG R+PSF P  GLRQGDPLSPYLF++CMEKL+ AI + V    WKP+ +S+ GP L
Sbjct: 626  ILWNGNRMPSFKPTHGLRQGDPLSPYLFILCMEKLSLAINEAVDIGSWKPICISRNGPRL 685

Query: 1898 SHLFFADDVLLFSKATRSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDSIV 1719
            SHL FADDVLLFSKA +SQ   + N+F  F+ ASGL++N++KSRALFS    RAK+  + 
Sbjct: 686  SHLLFADDVLLFSKAKKSQLRFITNLFDVFSRASGLKINISKSRALFSSGIPRAKIQQLT 745

Query: 1718 TITGIRSAVSFDKYLGFPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAKSV 1539
            +ITGIRS  S  KYLGFP++ GR  K+DF+F+++K+Q+RLASWK+KLL + GRL LA SV
Sbjct: 746  SITGIRSTPSLGKYLGFPILNGRAKKSDFDFIIEKMQTRLASWKSKLLNKPGRLALASSV 805

Query: 1538 LNSIPIYYMQVAWIPQSICTRIDNLTR 1458
            L SIP YYMQ+AW+PQSIC  ID+ TR
Sbjct: 806  LTSIPSYYMQIAWLPQSICNIIDHTTR 832



 Score =  298 bits (763), Expect(3) = 0.0
 Identities = 142/309 (45%), Positives = 193/309 (62%), Gaps = 10/309 (3%)
 Frame = -3

Query: 1456 RDFIWKGSQDKGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKLWCH 1277
            R FIWKGS + GINLVGW  I+  K  GGLGIR AR+ NT++LGKLVWDL + ++KLW  
Sbjct: 832  RHFIWKGSTNTGINLVGWQKISCPKRCGGLGIRAARDMNTSLLGKLVWDLLQDSDKLWVR 891

Query: 1276 VLAEKYMGLSSILEVSKKNGSLTWNSIMKARGVLKDGYDFRLGNGESSFWYDNWTPYGKL 1097
            VL++KY+  + IL     +GS TWNSIMKA+ VL+ G+ +R G+G SSFWY +W+ +G L
Sbjct: 892  VLSDKYISGTRILSSDTLSGSSTWNSIMKAKNVLRTGFVWRPGSGNSSFWYSHWSHFGPL 951

Query: 1096 SALVPFVDIHDTQLSIKDIVHDDSWQLQRLYTNIPQYVSDYIQAIQPCLNPTIDDGYTWK 917
             A+VP+V  HDT L +KD+    +  L  LYT +PQ V   + +++   N TI+D   W 
Sbjct: 952  GAIVPYVHYHDTALMVKDVFVSSTANLHLLYTQLPQEVVISLNSMKFSFNSTIEDTMIWS 1011

Query: 916  GSLDGVYTTKSGFKWIVDKRQQVTDVRTILSWLWIWRLPVSEKIRFFFWTACHNTLP--- 746
             +  G YTT SG+ WI+  R Q   +++  SW WIW L + EKI+F FW ACHN++P   
Sbjct: 1012 ANKHGTYTTSSGYLWILSLRSQ---LQSNQSWKWIWSLHLPEKIKFLFWLACHNSVPTLA 1068

Query: 745  -------FTVPNCQRCGCAIEDFLHCIRDCPVPRQIWFILGFCDPAFYQVTNSIDWLLAG 587
                    +   C RCG   E FLHC+RDCP  + +WF +GF  P FY  T++I W+  G
Sbjct: 1069 LLHHRNMSSSSACPRCGYFEESFLHCVRDCPTSKNLWFSIGFSAPQFYDTTDNISWIKEG 1128

Query: 586  AKSTVPQIF 560
               +   IF
Sbjct: 1129 TSGSSLNIF 1137



 Score = 37.4 bits (85), Expect(3) = 0.0
 Identities = 23/76 (30%), Positives = 32/76 (42%)
 Frame = -2

Query: 539  IPSYRL*LNINCLPKLMKPSNQNXXXXXXSERSVTWHPEKDCDVILNVDGSCLATWVKLG 360
            IP YRL +    + +L              +  V W+      +ILNVDGSCL T  + G
Sbjct: 1158 IPQYRLIMEAKLMSQLFSSCFSTNSSGTLVDHFVKWNASNMTCIILNVDGSCLGTPCRAG 1217

Query: 359  LVESCALMRENGSAVS 312
                  L   NG+ +S
Sbjct: 1218 F--GGVLRNSNGAWIS 1231



 Score =  400 bits (1028), Expect = e-113
 Identities = 189/362 (52%), Positives = 256/362 (70%)
 Frame = -1

Query: 4020 MIGFQDVSLLSWNIWGAHNSKAKRHLMDLIRKFKPTILIIMETHIAFARTVAFWTRAGYS 3841
            M   +D S+LSWN+ GA NS AKRHL ++ RKF PT L+IMETHI+F+R   FW+  GY 
Sbjct: 1    MEALKDTSILSWNVRGASNSVAKRHLKEVTRKFSPTFLVIMETHISFSRLNTFWSNLGYV 60

Query: 3840 SVAVVEPRGLSGGLWILRQNGSNVSISIFDVFADTITIKLKVGDDSWLFTGVYASPVYTN 3661
             V ++E +G SGGLW+++ + S V+ SI D  A +IT  L  G      T +YASP  T 
Sbjct: 61   PVHIIEAQGHSGGLWLMKNSSSQVNTSIIDYNAHSITFSLSRGHSQSTCTCLYASPNPTI 120

Query: 3660 RLQLWDHLISLHDHVTEPWLLMGDFNEILLPSEQRGGNIYQNRADDFLRVLDACSLTDMP 3481
            R  LW +L +L   +  PW+L+GDFNE LLP +QRGG    +RA  F + L+ C+L D+ 
Sbjct: 121  RTSLWSYLTTLSHGINGPWMLIGDFNETLLPGDQRGGTFSPSRAAIFSKFLENCNLLDLT 180

Query: 3480 STGGNFTWNRPCRGQRRVSKKLDRAVASITWRHLFSEAFVEVLCRHHSDHNPILVRCGGL 3301
            +TGG FTW+R  +G R +SKKLDR ++++ WR  F EAFV++LCR HSDHNPI +R GGL
Sbjct: 181  TTGGRFTWHRNTQGTRSLSKKLDRGISNVEWRLAFPEAFVDILCRFHSDHNPIFLRFGGL 240

Query: 3300 PQNRGVRPFRFEAAWITHPEYQDVVKRARSIENSDPVLALHRVKEESIIFNNEIFGSIWK 3121
            P  RG RPFRFEAAWI H +Y  VV+RA    N +PV AL  V++ SI FN+E+FG+I++
Sbjct: 241  PLARGPRPFRFEAAWIDHDDYSSVVERAWCYSNHNPVTALQLVRDNSIKFNHEVFGNIFQ 300

Query: 3120 RKNALERRLEGVQKALDRIDSARLVYLEHQLQKNYDTIPAQEELHWYQKSREKWIQLGDR 2941
            +K  +E RL+G+QK L+R+DSA  V+LE+QLQ+ Y+ I  QEE+HWYQKSRE+W++ GD+
Sbjct: 301  KKKHIEARLKGIQKYLERVDSAHHVHLEYQLQQEYNHILFQEEIHWYQKSREQWVKFGDK 360

Query: 2940 NT 2935
            N+
Sbjct: 361  NS 362



 Score =  112 bits (281), Expect = 4e-21
 Identities = 57/114 (50%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
 Frame = -1

Query: 369  QAGFGGILRTNEGKWIRGFSDNI-GFSNSLHAKLLGLYRGLSFTWDQGYCLVKCYSDSAL 193
            +AGFGG+LR + G WI GFS  I G ++ L+A+LL +Y GLS   D G+  V CYSDS  
Sbjct: 1215 RAGFGGVLRNSNGAWISGFSGFIAGSTDILYAELLAIYHGLSLAKDLGHDHVACYSDSLN 1274

Query: 192  SIHLVT*PLNKWHFYAAIIKNVSELLSRN*NVVLVHTLREGNACADYLAKLGAS 31
            S+ L+     ++H YA +I+N+ +LL     V L+H+LREGN+CAD++AKLGAS
Sbjct: 1275 SLSLIQNSTPRFHIYAVLIQNIKDLLLDLGTVTLIHSLREGNSCADFMAKLGAS 1328


>gb|PNX92852.1| hypothetical protein L195_g015995, partial [Trifolium pratense]
          Length = 664

 Score =  470 bits (1209), Expect(2) = 0.0
 Identities = 211/364 (57%), Positives = 278/364 (76%)
 Frame = -1

Query: 4023 LMIGFQDVSLLSWNIWGAHNSKAKRHLMDLIRKFKPTILIIMETHIAFARTVAFWTRAGY 3844
            +M+GF++V++LSWN+WGA N+KAKRHLMD+IRK  PT LIIMETH +F +T  FW R+GY
Sbjct: 1    MMLGFKEVTVLSWNVWGAANNKAKRHLMDVIRKHSPTFLIIMETHTSFQKTQQFWNRSGY 60

Query: 3843 SSVAVVEPRGLSGGLWILRQNGSNVSISIFDVFADTITIKLKVGDDSWLFTGVYASPVYT 3664
             SV  V+ RG +GG+W+L+QNGSN++ ++F+V+ DTITI+L +G + W  TG+YASP YT
Sbjct: 61   VSVQCVDARGQAGGIWLLKQNGSNITANVFEVYMDTITIRLSLGTEVWFLTGIYASPTYT 120

Query: 3663 NRLQLWDHLISLHDHVTEPWLLMGDFNEILLPSEQRGGNIYQNRADDFLRVLDACSLTDM 3484
            +R++LW+H+I L   + +PWLLMGDFN+I+LPSEQ+GG    +RA     V D C+L D+
Sbjct: 121  SRIELWNHIIELRRDINDPWLLMGDFNDIILPSEQKGGTFSHSRAGALQNVYDKCNLMDI 180

Query: 3483 PSTGGNFTWNRPCRGQRRVSKKLDRAVASITWRHLFSEAFVEVLCRHHSDHNPILVRCGG 3304
             +TGG FTWNR C G R V +KLDRA+A + W   F +A+VEVLC+ HSDHNP+L+RCG 
Sbjct: 181  KTTGGIFTWNRTCSGNRMVFRKLDRAIADVPWCMAFPDAYVEVLCKFHSDHNPLLLRCGR 240

Query: 3303 LPQNRGVRPFRFEAAWITHPEYQDVVKRARSIENSDPVLALHRVKEESIIFNNEIFGSIW 3124
               N G RPFRFEAAWITHP Y D+VK A      D V +L  V++ESI FN   FG+I 
Sbjct: 241  PLTNHGPRPFRFEAAWITHPNYHDIVKSAWGKNTGDIVNSLQEVQQESINFNKVSFGNIR 300

Query: 3123 KRKNALERRLEGVQKALDRIDSARLVYLEHQLQKNYDTIPAQEELHWYQKSREKWIQLGD 2944
            KRK  +ERRL+G+Q +L+R+DSARLVYL+  LQK YD I +QEE+HW+QK+R+ WI+LGD
Sbjct: 301  KRKERIERRLKGIQSSLERVDSARLVYLQRDLQKEYDIILSQEEIHWFQKARDDWIKLGD 360

Query: 2943 RNTK 2932
            RNTK
Sbjct: 361  RNTK 364



 Score =  376 bits (965), Expect(2) = 0.0
 Identities = 191/321 (59%), Positives = 232/321 (72%)
 Frame = -2

Query: 2933 KFFHAQTIIRRKRNKIHGLFLPDGNWCIDDNILQQEAQRYFKRLFWTDSLTDNTPQ*LIH 2754
            KFFH +TIIRRKRNKIHGL LP+G WC DD+ L+ EAQ YFK LF + +L+ N       
Sbjct: 364  KFFHTKTIIRRKRNKIHGLHLPNGIWCTDDSTLKDEAQYYFKNLFCSPNLS-NINDIDDR 422

Query: 2753 ITTPRLDDHAVLALTQPVTHEEVRKALNTMHAYKSHGPDGFQGIFFKQYWHLIGNDVCNL 2574
               P L+D A   L++ VT +EV +ALN MH +K+ GPDGFQGIFFKQYWH++G+DV +L
Sbjct: 423  QLAPTLNDEACHFLSKQVTKDEVTQALNQMHPFKAPGPDGFQGIFFKQYWHIVGDDVTHL 482

Query: 2573 VIKAFESGTFDPILAEIFLGFTQGIHRRPQXXXXXXXXXXXISKVDSPRTFKDFRPISLC 2394
            V  AFE+G F   L+E  +                        KVD P+ FK+FRPISLC
Sbjct: 483  VSVAFETGEFPQSLSETLIALIP--------------------KVDCPKNFKEFRPISLC 522

Query: 2393 NTIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVLQEALHSMHXXXXXKGGV 2214
            NTIYKLITKILVNR+RP L QI+GP+QS FLPG+GT DNAI+LQE +HSM      KG +
Sbjct: 523  NTIYKLITKILVNRLRPFLNQIVGPFQSSFLPGKGTTDNAIILQEVIHSMRKSKRKKGDM 582

Query: 2213 AYKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSSLSLIWNGKRLPSFSPNR 2034
             +KIDLEKAYD+V+W+FL+ CL + GFP  TIKLIM+CVSSSSLS+IWNG RLP F+P R
Sbjct: 583  VFKIDLEKAYDNVSWEFLQFCLQQNGFPPITIKLIMYCVSSSSLSIIWNGCRLPCFTPTR 642

Query: 2033 GLRQGDPLSPYLFVICMEKLA 1971
            GLRQGDPLSPYLFV+CME L+
Sbjct: 643  GLRQGDPLSPYLFVLCMEVLS 663


>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
            [Medicago truncatula]
          Length = 1296

 Score =  550 bits (1417), Expect(4) = 0.0
 Identities = 270/508 (53%), Positives = 355/508 (69%), Gaps = 3/508 (0%)
 Frame = -2

Query: 2969 EKNGFNWVIATQK---FFHAQTIIRRKRNKIHGLFLPDGNWCIDDNILQQEAQRYFKRLF 2799
            +K+   WV    K   FFHAQT+IRRK NKIH L LP+G    D NILQ+EA +YFK+ F
Sbjct: 341  QKSREQWVKLGDKNTAFFHAQTVIRRKWNKIHKLQLPNGISTSDSNILQEEALKYFKKFF 400

Query: 2798 WTDSLTDNTPQ*LIHITTPRLDDHAVLALTQPVTHEEVRKALNTMHAYKSHGPDGFQGIF 2619
                +  +  +       P LDD    +LT P+T +EV  ALN+M  YK+ GPDGF  IF
Sbjct: 401  CGSQIPYS--RFFNEGRHPALDDTGKTSLTSPITKKEVFAALNSMKPYKAPGPDGFHCIF 458

Query: 2618 FKQYWHLIGNDVCNLVIKAFESGTFDPILAEIFLGFTQGIHRRPQXXXXXXXXXXXISKV 2439
            FKQYWH++G+DV +LV  AF +G FDP ++   +                        K+
Sbjct: 459  FKQYWHIVGDDVFHLVRSAFLTGHFDPAISNTLIALIP--------------------KI 498

Query: 2438 DSPRTFKDFRPISLCNTIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVLQE 2259
            DSP T+KDFRPISLCNT+YK+ITK+LV+R+RP L  +IGPYQS FLPGRGT DN+I+LQE
Sbjct: 499  DSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLIGPYQSSFLPGRGTADNSIILQE 558

Query: 2258 ALHSMHXXXXXKGGVAYKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSSLS 2079
             LH M      KG VA+K+DLEKA+D+VNWDFL SCL++FGFP+  +KLIMHCVSS++ S
Sbjct: 559  ILHFMKRSKRKKGYVAFKLDLEKAFDNVNWDFLNSCLLDFGFPDIIVKLIMHCVSSANYS 618

Query: 2078 LIWNGKRLPSFSPNRGLRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGPAL 1899
            L+WNG ++P F P  GLRQGDPLSPYLF++CMEKL+ AI D V    W+P+ +   GP +
Sbjct: 619  LLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAIQDAVLQGSWEPIHIINDGPQI 678

Query: 1898 SHLFFADDVLLFSKATRSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDSIV 1719
            SHL FADDVLLF+KA  SQ   + N+F  F+ ASGL++N++KSRA +S  T   K++++ 
Sbjct: 679  SHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLKINISKSRAYYSSGTPNGKINNLT 738

Query: 1718 TITGIRSAVSFDKYLGFPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAKSV 1539
             I+GI+S  +  KYLGFPM+QGR  ++DF F+++K+Q+RLASWKN+LL + GRLTLA SV
Sbjct: 739  AISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEKMQTRLASWKNRLLNRTGRLTLATSV 798

Query: 1538 LNSIPIYYMQVAWIPQSICTRIDNLTRS 1455
            L++IP YYMQ+ W+PQ+IC  ID   R+
Sbjct: 799  LSTIPTYYMQINWLPQNICDSIDQTARN 826



 Score =  205 bits (522), Expect(4) = 0.0
 Identities = 112/298 (37%), Positives = 151/298 (50%), Gaps = 11/298 (3%)
 Frame = -3

Query: 1456 RDFIWKGSQDKGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKLWCH 1277
            R+F+WKGS +KGI+LV W +IT+ K  GGLGIR AR+ N  +LGKLVWD+ +  NKLW +
Sbjct: 825  RNFLWKGSNNKGIHLVNWKTITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVN 884

Query: 1276 VLAEKYMGLSSILEVS-KKNGSLTWNSIMKARGVLKDGYDFRLGNGESSFWYDNWTPYGK 1100
            +LA+KY   +S+LE +   N S +W SI++A+ +LK GY +R G G SSFW+ NW+ +G 
Sbjct: 885  LLAKKYSSGTSLLEANVNSNSSPSWFSIIRAKDILKTGYSWRAGAGTSSFWFSNWSSHGY 944

Query: 1099 LSALVPFVDIHDTQLSIKDIVHDDSWQLQRLYTNIPQYVSDYIQAIQPCLNPTIDDGYTW 920
            L +LVP +DIHD  L++KD+                                        
Sbjct: 945  LGSLVPIIDIHDIHLTVKDV---------------------------------------- 964

Query: 919  KGSLDGVYTTKSGFKWIVDKRQQVTDVRTILSWLWIWRLPVSEKIRFFFWTACHNTLP-- 746
               L  V T+ +   W               SW  IW+L   EK +   W ACHN  P  
Sbjct: 965  ---LTSVETSSNDSVW---------------SW--IWQLTAPEKYKLLIWLACHNAAPTL 1004

Query: 745  --------FTVPNCQRCGCAIEDFLHCIRDCPVPRQIWFILGFCDPAFYQVTNSIDWL 596
                         C RCG   E FLHC+RDC     IW  LGF   AF+ V++  DW+
Sbjct: 1005 SLLHHRKMAPAATCSRCGENDESFLHCVRDCKHSAAIWHKLGFVTAAFFSVSSVQDWI 1062



 Score = 98.2 bits (243), Expect(4) = 0.0
 Identities = 54/114 (47%), Positives = 75/114 (65%), Gaps = 1/114 (0%)
 Frame = -1

Query: 369  QAGFGGILRTNEGKWIRGFSDNIGFSNS-LHAKLLGLYRGLSFTWDQGYCLVKCYSDSAL 193
            +AGFGGI R N G ++ G+S  I  S   L A+L  L++GL    + G   + CYSDS L
Sbjct: 1153 RAGFGGIFRNNVGGYLSGYSGFISESTDILLAELTALHQGLIMAAEMGIEELACYSDSLL 1212

Query: 192  SIHLVT*PLNKWHFYAAIIKNVSELLSRN*NVVLVHTLREGNACADYLAKLGAS 31
            +I+L+T   +K+H YA +I+++ +LLS + N  + H  REGN CADYLAKLGAS
Sbjct: 1213 TINLITRTTSKYHTYAVLIQDIKDLLSAH-NFSVYHCFREGNQCADYLAKLGAS 1265



 Score = 30.0 bits (66), Expect(4) = 0.0
 Identities = 21/58 (36%), Positives = 28/58 (48%)
 Frame = -2

Query: 533  SYRL*LNINCLPKLMKPSNQNXXXXXXSERSVTWHPEKDCDVILNVDGSCLATWVKLG 360
            S+R+  +IN +      SN        S R V W+       ILNVDGSCL T ++ G
Sbjct: 1101 SFRINDSINAIRSAFVKSN---VIQPDSARMVKWNQGNHQCHILNVDGSCLGTPIRAG 1155



 Score =  340 bits (873), Expect = 3e-93
 Identities = 161/322 (50%), Positives = 229/322 (71%)
 Frame = -1

Query: 3900 METHIAFARTVAFWTRAGYSSVAVVEPRGLSGGLWILRQNGSNVSISIFDVFADTITIKL 3721
            ++ H++FAR  +FW   GY+ V ++E  G SGG+W+L+ + +N++ ++ D    +IT  +
Sbjct: 34   LKPHVSFARLSSFWINIGYTPVHIIEANGHSGGVWLLKHSTTNITSTVLDFNQYSITFII 93

Query: 3720 KVGDDSWLFTGVYASPVYTNRLQLWDHLISLHDHVTEPWLLMGDFNEILLPSEQRGGNIY 3541
              G      T +YASP Y+ R  LW++L++++D +T PW+L+GDFNE  LPSEQRGG  +
Sbjct: 94   GRGAAITTCTCIYASPNYSMRPNLWNYLVNINDTITGPWMLIGDFNETHLPSEQRGGTFH 153

Query: 3540 QNRADDFLRVLDACSLTDMPSTGGNFTWNRPCRGQRRVSKKLDRAVASITWRHLFSEAFV 3361
             NRA  F   ++ C+L D+ +TGG FTW++   G R +SKKLDR +A++ WR  F EAFV
Sbjct: 154  HNRAATFSNFMNNCNLLDLTTTGGRFTWHKNNNGIRILSKKLDRGMANVDWRLSFPEAFV 213

Query: 3360 EVLCRHHSDHNPILVRCGGLPQNRGVRPFRFEAAWITHPEYQDVVKRARSIENSDPVLAL 3181
            EVLCR HSDHNP+L+R GGLP  RG RPFRFEAAWI H +Y +VVKR+ S    +P  +L
Sbjct: 214  EVLCRLHSDHNPLLLRFGGLPLTRGPRPFRFEAAWIDHYDYGNVVKRSWSTHTHNPTASL 273

Query: 3180 HRVKEESIIFNNEIFGSIWKRKNALERRLEGVQKALDRIDSARLVYLEHQLQKNYDTIPA 3001
             +V E SIIFN+++FG+I++RK+ +E RL+GVQ  L+R+DS R   LE +LQ  Y+ I  
Sbjct: 274  IKVMENSIIFNHDVFGNIFQRKSRVEWRLKGVQSYLERVDSYRHTLLEKELQDEYNHILF 333

Query: 3000 QEELHWYQKSREKWIQLGDRNT 2935
            QEE+ WYQKSRE+W++LGD+NT
Sbjct: 334  QEEMLWYQKSREQWVKLGDKNT 355


>gb|KYP75037.1| Transposon TX1 uncharacterized [Cajanus cajan]
 gb|KYP75084.1| Transposon TX1 uncharacterized [Cajanus cajan]
          Length = 929

 Score =  459 bits (1180), Expect(3) = 0.0
 Identities = 232/492 (47%), Positives = 322/492 (65%)
 Frame = -2

Query: 2930 FFHAQTIIRRKRNKIHGLFLPDGNWCIDDNILQQEAQRYFKRLFWTDSLTDNTPQ*LIHI 2751
            F HAQTI RR+RNKI GLFLPDG W  D  +L++EA +++  LF  D         + + 
Sbjct: 323  FLHAQTISRRRRNKIRGLFLPDGTWHTDPEVLKREAIQFYSNLFSEDPQGHFVD--MKYG 380

Query: 2750 TTPRLDDHAVLALTQPVTHEEVRKALNTMHAYKSHGPDGFQGIFFKQYWHLIGNDVCNLV 2571
              P+L   AV +L  P+T EEVR+A+  M ++K+ GP GFQ  FFKQYW ++G+++   V
Sbjct: 381  APPQLGAEAVASLLAPITKEEVRRAVMCMKSFKAPGPYGFQPFFFKQYWPIVGDELWRTV 440

Query: 2570 IKAFESGTFDPILAEIFLGFTQGIHRRPQXXXXXXXXXXXISKVDSPRTFKDFRPISLCN 2391
             +AF +G+ D  L E  +                      I KVD P   K+FRPISLCN
Sbjct: 441  NEAFVNGSSDSSLLETLV--------------------VLIPKVDYPVHLKEFRPISLCN 480

Query: 2390 TIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVLQEALHSMHXXXXXKGGVA 2211
              +K+I+K++V RIRP L  IIGP+Q  F+PGRG  DN+I+ QEA++ +       G +A
Sbjct: 481  VAFKVISKVIVARIRPFLNDIIGPFQGSFIPGRGMTDNSILAQEAINFIQKDKSKLGSLA 540

Query: 2210 YKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSSLSLIWNGKRLPSFSPNRG 2031
             KIDLEKAYD +NW+FL++ L +FGFP   IKLIM  V++SSLS++WNG +LPSF+P RG
Sbjct: 541  LKIDLEKAYDQINWNFLQATLWKFGFPERIIKLIMWGVTNSSLSVLWNGSKLPSFAPTRG 600

Query: 2030 LRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGPALSHLFFADDVLLFSKAT 1851
            LRQGDPLSPYLFV+CME+LA  I +   +  W P+ LS  GP +SHL FADDV+LFS+AT
Sbjct: 601  LRQGDPLSPYLFVLCMERLALRINELNREGCWNPIHLSPGGPPISHLLFADDVILFSQAT 660

Query: 1850 RSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDSIVTITGIRSAVSFDKYLG 1671
              Q  ++A++ + F T SGL++N+ KS+ + SK    ++++ +    GI     F +YLG
Sbjct: 661  NDQVQVMASVLENFCTVSGLKINIEKSKFVVSKGVPSSRLEHLEQTLGIEHTPKFKRYLG 720

Query: 1670 FPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAKSVLNSIPIYYMQVAWIPQ 1491
             PMIQG+   +DF  V+D+I +RLASWK +LL +AGRL L  SV+ SIP+Y MQ  W+PQ
Sbjct: 721  IPMIQGKAKISDFHHVIDRINNRLASWKGRLLNKAGRLCLISSVVTSIPLYNMQSLWLPQ 780

Query: 1490 SICTRIDNLTRS 1455
             +C +I+  +R+
Sbjct: 781  EVCNKINQASRT 792



 Score =  287 bits (735), Expect(3) = 0.0
 Identities = 147/325 (45%), Positives = 203/325 (62%)
 Frame = -1

Query: 3900 METHIAFARTVAFWTRAGYSSVAVVEPRGLSGGLWILRQNGSNVSISIFDVFADTITIKL 3721
            METH +F+ T +FWT+  Y     VE RG SGG+WIL    S +  S   V    IT ++
Sbjct: 1    METHCSFSSTESFWTKLDYKLCHKVEARGHSGGIWILIAQHSQLVTSEVAVSPQAITFRV 60

Query: 3720 KVGDDSWLFTGVYASPVYTNRLQLWDHLISLHDHVTEPWLLMGDFNEILLPSEQRGGNIY 3541
              G   W  T VYASP Y  R+Q W H+ SL   ++ PW+L+GDFNEI+ PSE RGG   
Sbjct: 61   HQGHKEWSCTTVYASPSYNLRVQAWSHIKSLRSQISTPWILIGDFNEIVSPSECRGGLFS 120

Query: 3540 QNRADDFLRVLDACSLTDMPSTGGNFTWNRPCRGQRRVSKKLDRAVASITWRHLFSEAFV 3361
             +RA  F++++D C+L D+ +TG  FTW R   G   ++K+LDRA+    W+ LF  AFV
Sbjct: 121  LSRASQFVQLIDECNLLDLGATGLRFTWYRNQLGFA-LAKRLDRALCDTQWQTLFPNAFV 179

Query: 3360 EVLCRHHSDHNPILVRCGGLPQNRGVRPFRFEAAWITHPEYQDVVKRARSIENSDPVLAL 3181
            E LCR +SDH P+LVRCGGL + +  RPFRF+AAW TH  ++ +VK A        V  L
Sbjct: 180  ENLCRVYSDHCPLLVRCGGLSEPKKDRPFRFQAAWATHKGFEKIVKDAWIRSTPTLVNGL 239

Query: 3180 HRVKEESIIFNNEIFGSIWKRKNALERRLEGVQKALDRIDSARLVYLEHQLQKNYDTIPA 3001
            + V++E+I FN  +FG+I+ RK  ++ +L+GVQ  L++  S  L  LE +LQ+  + +  
Sbjct: 240  NIVRKEAIEFNRNVFGNIFSRKREIQAKLKGVQLELEKRQSESLTRLETKLQEELNEVCL 299

Query: 3000 QEELHWYQKSREKWIQLGDRNTKIL 2926
             EE  W+QKSR+KW+Q GDRNT  L
Sbjct: 300  LEEFLWFQKSRKKWVQFGDRNTTFL 324



 Score =  110 bits (276), Expect(3) = 0.0
 Identities = 56/138 (40%), Positives = 81/138 (58%), Gaps = 2/138 (1%)
 Frame = -3

Query: 1456 RDFIW-KGSQDKGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKLWC 1280
            R  +W K S  +  +LVGW+++T+ K  GGLGIR +R+ N +++GKL+WDL     K W 
Sbjct: 791  RTMLWAKASSSRYWSLVGWNTVTRPKEFGGLGIRESRQVNISLIGKLIWDLLHSPQKPWV 850

Query: 1279 HVLAEKYMGLSSILEVSKKNG-SLTWNSIMKARGVLKDGYDFRLGNGESSFWYDNWTPYG 1103
             +L  KY+   S+L   K  G S  WN+I+KA   L+ G+   LG G SS WY++W    
Sbjct: 851  KILQAKYLHGESVLHAKKSKGASQVWNNIVKALPFLRQGFYPNLGAGNSSLWYEDWLGSR 910

Query: 1102 KLSALVPFVDIHDTQLSI 1049
             L   VP+V I DT  ++
Sbjct: 911  LLCREVPYVHISDTDRTV 928


>gb|PNY14401.1| ribonuclease H [Trifolium pratense]
          Length = 1359

 Score =  554 bits (1427), Expect(3) = 0.0
 Identities = 270/508 (53%), Positives = 359/508 (70%), Gaps = 3/508 (0%)
 Frame = -2

Query: 2969 EKNGFNWVIATQK---FFHAQTIIRRKRNKIHGLFLPDGNWCIDDNILQQEAQRYFKRLF 2799
            +K+   W+    K   FFHAQTIIRR+RNKIH L LP+G W  D   LQ EAQ YFK  F
Sbjct: 348  QKSREQWIKFGDKNSSFFHAQTIIRRRRNKIHRLQLPNGTWSTDCATLQDEAQLYFKNFF 407

Query: 2798 WTDSLTDNTPQ*LIHITTPRLDDHAVLALTQPVTHEEVRKALNTMHAYKSHGPDGFQGIF 2619
             +     N  +     + P +DD  + ALT P+T +EV  ALN+M  +K+ GPDGF  IF
Sbjct: 408  SSTQPVHN--RIFREGSHPIIDDAGITALTCPITKDEVTAALNSMKPFKAPGPDGFHCIF 465

Query: 2618 FKQYWHLIGNDVCNLVIKAFESGTFDPILAEIFLGFTQGIHRRPQXXXXXXXXXXXISKV 2439
            FKQYWH++G+D+ +LV  AF SG FD  ++   +                        K+
Sbjct: 466  FKQYWHIVGDDIFHLVKTAFSSGYFDHNISNTLIALIP--------------------KI 505

Query: 2438 DSPRTFKDFRPISLCNTIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVLQE 2259
            D+P+TFKDFRPISLCN +YKLITK+LV+R+RP L+ IIGP+QS FLPGRGT DNAIVLQE
Sbjct: 506  DTPKTFKDFRPISLCNIVYKLITKVLVHRLRPFLDNIIGPFQSSFLPGRGTSDNAIVLQE 565

Query: 2258 ALHSMHXXXXXKGGVAYKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSSLS 2079
             +H M       G  A+K+DLEKA+D+VNWDFLR+CL++FGFP+ T++LIMHCV+S + S
Sbjct: 566  IIHFMKRSRNKNGYAAFKLDLEKAFDNVNWDFLRNCLIDFGFPDITVRLIMHCVTSPTYS 625

Query: 2078 LIWNGKRLPSFSPNRGLRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGPAL 1899
            ++WNG +LP F+P  GLRQGDPLSPYLF+ICMEKL+ AI + V  R W+P+ ++  GP L
Sbjct: 626  ILWNGTQLPPFTPTHGLRQGDPLSPYLFIICMEKLSVAINNAVIQRNWEPIAITTHGPQL 685

Query: 1898 SHLFFADDVLLFSKATRSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDSIV 1719
            SHL FADDVLLF+KA  SQ + +  +F+ F+ ASGL++N++KSRA +S  T + K+  + 
Sbjct: 686  SHLLFADDVLLFTKAKNSQINFITELFERFSHASGLKINLSKSRAYYSSGTPQDKIHRLT 745

Query: 1718 TITGIRSAVSFDKYLGFPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAKSV 1539
            +++GIR+ +S +KYLGFP++QGR  K DF F+ +K+Q RLASWKNK+L ++GRL LA SV
Sbjct: 746  SLSGIRNTLSLEKYLGFPILQGRAKKTDFLFIFEKMQRRLASWKNKILNKSGRLALASSV 805

Query: 1538 LNSIPIYYMQVAWIPQSICTRIDNLTRS 1455
            L+SIP YYMQ+ W+PQSIC  ID +TR+
Sbjct: 806  LSSIPTYYMQITWLPQSICDGIDQITRN 833



 Score =  271 bits (693), Expect(3) = 0.0
 Identities = 127/300 (42%), Positives = 186/300 (62%), Gaps = 11/300 (3%)
 Frame = -3

Query: 1462 LDRDFIWKGSQDKGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKLW 1283
            + R+F+WK S  KGINLVGW  I++ K  GGLG+R AR+ N  +LGKLVWDL +  NKLW
Sbjct: 830  ITRNFLWKDSNKKGINLVGWKKISRPKNLGGLGLRSARDANICLLGKLVWDLLQSTNKLW 889

Query: 1282 CHVLAEKYMGLSSILEVS-KKNGSLTWNSIMKARGVLKDGYDFRLGNGESSFWYDNWTPY 1106
             ++ + +Y     +L+ S +++ S TW+S+++A+ +L  G+ +R G+G SSFWY  W+  
Sbjct: 890  VNIFSHRYTTGFKLLQASVQQSSSNTWSSVIRAKDILHKGFSWRAGSGSSSFWYSPWSTL 949

Query: 1105 GKLSALVPFVDIHDTQLSIKDIVHDDSWQLQRLYTNIPQYVSDYIQAIQPCLNPTIDDGY 926
            G +  LVP+VDIHD  L++KD+V       Q +YT++PQ   D I   Q   N ++ D +
Sbjct: 950  GYICTLVPYVDIHDIHLTVKDVVGGCFPYTQMIYTHLPQAALDTINNTQLSFNASLQDVF 1009

Query: 925  TWKGSLDGVYTTKSGFKWIVDKRQQVTDVRTILSWLWIWRLPVSEKIRFFFWTACHNTLP 746
             W  + +G YTTKSG+ W++ + +QV  +    SW WIW++   EKI+F FW ACH+ +P
Sbjct: 1010 IWSHNKNGDYTTKSGYDWLLSQSEQV--IIPSHSWSWIWKIAGPEKIKFLFWLACHDAVP 1067

Query: 745  ----------FTVPNCQRCGCAIEDFLHCIRDCPVPRQIWFILGFCDPAFYQVTNSIDWL 596
                       + P C RCG  IE FLHCIRDC   R IWF +G    +F+ +++  DWL
Sbjct: 1068 TLSVLHHRNIVSSPICSRCGELIETFLHCIRDCRYSRSIWFHIGLTSSSFHGISSVHDWL 1127



 Score = 30.8 bits (68), Expect(3) = 0.0
 Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
 Frame = -2

Query: 593  CWC*EYCPSNIFFLAQVSIPSYRL*LNIN-CLPKLMKPSNQNXXXXXXSERSVTWHPEKD 417
            CW       NIF +            N+N C P LM  +N          R+  W+    
Sbjct: 1159 CWSAVRISYNIFSMVD----------NLNSCFPTLMDEANI---------RTTKWNCLDF 1199

Query: 416  CDVILNVDGSCLATWVKLGLVESCALMRENGSAVS 312
               +LN DGSC  T ++ G    C +   +G  +S
Sbjct: 1200 TGFVLNTDGSCSGTPIRCGF--GCIIRNSDGRFIS 1232



 Score =  369 bits (948), Expect = e-103
 Identities = 183/362 (50%), Positives = 244/362 (67%)
 Frame = -1

Query: 4020 MIGFQDVSLLSWNIWGAHNSKAKRHLMDLIRKFKPTILIIMETHIAFARTVAFWTRAGYS 3841
            M    D+S+LSWNI GA N+ AKR L ++IRK++PT L I+ETH  FAR   FW+   Y 
Sbjct: 1    MEALNDISILSWNIRGAQNNNAKRQLKEMIRKYQPTFLAIVETHTPFARLNHFWSTNNYM 60

Query: 3840 SVAVVEPRGLSGGLWILRQNGSNVSISIFDVFADTITIKLKVGDDSWLFTGVYASPVYTN 3661
             + +VE  G SGG+W+L+   S  + ++ D    +IT  +   + +   T +YASP  T 
Sbjct: 61   PIHIVEASGHSGGIWLLKLTHSVYTTNVLDSNQFSITFTISHNNTTTSCTCIYASPNPTL 120

Query: 3660 RLQLWDHLISLHDHVTEPWLLMGDFNEILLPSEQRGGNIYQNRADDFLRVLDACSLTDMP 3481
            R   W++LI+L   +   W+L+GDFNE LLPSEQRGG     RA  F   +D C+L D+ 
Sbjct: 121  RPNFWNYLINLQTTIAGTWMLIGDFNETLLPSEQRGGVFNHTRATVFANFIDNCNLLDLT 180

Query: 3480 STGGNFTWNRPCRGQRRVSKKLDRAVASITWRHLFSEAFVEVLCRHHSDHNPILVRCGGL 3301
            +TGG FTW+R   G R +SKKLDR +A+I+WR  F EAF+EVLCR HSDHNP+L+R GGL
Sbjct: 181  TTGGRFTWHRNHNGLRILSKKLDRGLANISWRLAFPEAFIEVLCRLHSDHNPLLLRFGGL 240

Query: 3300 PQNRGVRPFRFEAAWITHPEYQDVVKRARSIENSDPVLALHRVKEESIIFNNEIFGSIWK 3121
            P   G RPFRFEAAWI H +Y +VV RA    N +  LAL+  ++ SI FN EIFG+I++
Sbjct: 241  PTAAGPRPFRFEAAWINHEDYAEVVDRAWQSANHNLPLALNNARDFSITFNREIFGNIFQ 300

Query: 3120 RKNALERRLEGVQKALDRIDSARLVYLEHQLQKNYDTIPAQEELHWYQKSREKWIQLGDR 2941
            RK  +ERRL+G+QK L+R+DS R V LE +LQ  Y+ I  QEE+ WYQKSRE+WI+ GD+
Sbjct: 301  RKKHIERRLQGIQKYLERVDSTRHVLLEKELQNQYNNILFQEEMLWYQKSREQWIKFGDK 360

Query: 2940 NT 2935
            N+
Sbjct: 361  NS 362



 Score = 95.5 bits (236), Expect = 7e-16
 Identities = 52/114 (45%), Positives = 75/114 (65%), Gaps = 1/114 (0%)
 Frame = -1

Query: 369  QAGFGGILRTNEGKWIRGFSDNI-GFSNSLHAKLLGLYRGLSFTWDQGYCLVKCYSDSAL 193
            + GFG I+R ++G++I G S +I G S+ L A+L G+Y+GL      G   + CY+DS L
Sbjct: 1216 RCGFGCIIRNSDGRFISGASGHITGSSDILLAELSGIYQGLKLASSLGVTDLICYTDSLL 1275

Query: 192  SIHLVT*PLNKWHFYAAIIKNVSELLSRN*NVVLVHTLREGNACADYLAKLGAS 31
            S +L+  P + +H Y  +I+N+ + L R  N+ + HTLREGN  ADYLAKLGAS
Sbjct: 1276 SCNLIQGPCSSYHIYGVLIQNIKDHL-RQYNIHICHTLREGNQSADYLAKLGAS 1328


>dbj|GAU35685.1| hypothetical protein TSUD_162570 [Trifolium subterraneum]
          Length = 1375

 Score =  520 bits (1339), Expect(2) = 0.0
 Identities = 270/501 (53%), Positives = 338/501 (67%)
 Frame = -2

Query: 2957 FNWVIATQKFFHAQTIIRRKRNKIHGLFLPDGNWCIDDNILQQEAQRYFKRLFWTDSLTD 2778
            F W+++   F +    +   ++ +     P G WC DD  L++EAQ++FK LF   +  D
Sbjct: 500  FYWLLSILSFLNFLVYLWIAKSYLKYDHFPSGIWCTDDTTLREEAQKHFKNLFCILNTCD 559

Query: 2777 NTPQ*LIHITTPRLDDHAVLALTQPVTHEEVRKALNTMHAYKSHGPDGFQGIFFKQYWHL 2598
                  +    P L+D A  +LTQ VT EEV +ALN MH +K+ GPDGFQGIFFKQYWH+
Sbjct: 560  QNALNDLP-EAPFLNDEACQSLTQQVTREEVTQALNQMHPFKAPGPDGFQGIFFKQYWHI 618

Query: 2597 IGNDVCNLVIKAFESGTFDPILAEIFLGFTQGIHRRPQXXXXXXXXXXXISKVDSPRTFK 2418
            +G+DV  L+  AFE+G F   L+E  +                        KVD P+ FK
Sbjct: 619  VGDDVVRLISTAFETGRFPSTLSETLIALIP--------------------KVDCPKNFK 658

Query: 2417 DFRPISLCNTIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVLQEALHSMHX 2238
            +FRPISLCNTIYKLITKI+                S FLPG+GT DNAI+LQEA+HSM  
Sbjct: 659  EFRPISLCNTIYKLITKIM----------------SSFLPGKGTTDNAIILQEAIHSMKK 702

Query: 2237 XXXXKGGVAYKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSSLSLIWNGKR 2058
                KG + +KIDLEKAYD+V+WDFL+ CL   GFP  TIKLIM CVSSSSL+++WNG+R
Sbjct: 703  SKRKKGDMVFKIDLEKAYDNVSWDFLQFCLQRSGFPPITIKLIMFCVSSSSLAILWNGRR 762

Query: 2057 LPSFSPNRGLRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGPALSHLFFAD 1878
            LPSF+P RGLRQGDPLSPYLFV+CME L+  I+  V D  WKPV+LS+ GP LSHLFF D
Sbjct: 763  LPSFTPTRGLRQGDPLSPYLFVVCMECLSQVIIKAVDDGYWKPVRLSRNGPPLSHLFFVD 822

Query: 1877 DVLLFSKATRSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDSIVTITGIRS 1698
            DVLLF+KAT SQA  +A I   FA+ SGL+VNV+KS+  FS ST R K++SIVT TGI  
Sbjct: 823  DVLLFAKATNSQALNIATILTRFASCSGLKVNVSKSKVFFSPSTPRGKINSIVTHTGINR 882

Query: 1697 AVSFDKYLGFPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAKSVLNSIPIY 1518
              S +KYLGFPM+ GR+ + DFEF+ +KI  RLASW++ LL +AGR+TL KSVLNSIP Y
Sbjct: 883  THSLEKYLGFPMMHGRLRRRDFEFLEEKISQRLASWQHNLLNKAGRMTLVKSVLNSIPNY 942

Query: 1517 YMQVAWIPQSICTRIDNLTRS 1455
            YMQVAW+PQ+ C  ID +TRS
Sbjct: 943  YMQVAWLPQTTCDSIDRMTRS 963



 Score =  291 bits (744), Expect(2) = 0.0
 Identities = 132/279 (47%), Positives = 177/279 (63%), Gaps = 10/279 (3%)
 Frame = -3

Query: 1462 LDRDFIWKGSQDKGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKLW 1283
            + R F+WKG+ +KGI+LVGWD ITK K  GGLGIR ARE NT++LGKLVW +H+  + LW
Sbjct: 960  MTRSFLWKGASNKGIHLVGWDKITKPKKLGGLGIRKAREVNTSLLGKLVWHMHQNCDTLW 1019

Query: 1282 CHVLAEKYMGLSSILEVSKKNGSLTWNSIMKARGVLKDGYDFRLGNGESSFWYDNWTPYG 1103
              VL  KY+       ++KK+GS+TWN+IMKA   LKDG+ FRLG+G SSFWY NW+  G
Sbjct: 1020 VQVLRHKYLNDDMFFSITKKSGSITWNAIMKALQALKDGFQFRLGDGNSSFWYSNWSGIG 1079

Query: 1102 KLSALVPFVDIHDTQLSIKDIVHDDSWQLQRLYTNIPQYVSDYIQAIQPCLNPTIDDGYT 923
             L+  VP+VDIHD Q+ ++D+  ++ W    LYT IP  V D+++ +  CLN  + D YT
Sbjct: 1080 NLADQVPYVDIHDLQMRVRDVYTNNKWNFNLLYTTIPADVMDHVKRLPVCLNSQVVDRYT 1139

Query: 922  WKGSLDGVYTTKSGFKWIVDKRQQVTDVRTILSWLWIWRLPVSEKIRFFFWTACHNTLP- 746
            WKG+L+G+YT K G+ W+       TD   I SW W+W +P  EKI+FF W+A HN LP 
Sbjct: 1140 WKGNLNGLYTAKEGYYWLNRFAFSDTDTDDI-SWNWVWHIPAPEKIKFFIWSALHNALPT 1198

Query: 745  ---------FTVPNCQRCGCAIEDFLHCIRDCPVPRQIW 656
                          C RC    E  LHC+R+C   ++ W
Sbjct: 1199 KSMLSHRGLLQANLCPRCNIEEESTLHCLRNCEFIKRFW 1237


>dbj|GAU50504.1| hypothetical protein TSUD_409790 [Trifolium subterraneum]
          Length = 902

 Score =  507 bits (1305), Expect(2) = 0.0
 Identities = 255/520 (49%), Positives = 343/520 (65%), Gaps = 5/520 (0%)
 Frame = -2

Query: 2999 KKNFIGTRNLEKNGFNWVIATQKFFHAQTIIRRKRNKIHGLFLPDGNWCIDDNILQQEAQ 2820
            KK  IGT+NLE+ G N  I        +  +        G     G+  +     +    
Sbjct: 60   KKKCIGTKNLERTGSNSEIRIAPSSTLKLSLEESATGFIGFSFLTGSGLLTVPFFRM--- 116

Query: 2819 RYFKRLFWTDSLTDNTPQ*LIHITTP-----RLDDHAVLALTQPVTHEEVRKALNTMHAY 2655
                RL +   ++      ++  T P      L      +L +P+T EE+  ALN+M  Y
Sbjct: 117  ----RLKFISKISSAVANLIMSPTFPVAYIRPLTKTKKKSLLRPITKEELSVALNSMKPY 172

Query: 2654 KSHGPDGFQGIFFKQYWHLIGNDVCNLVIKAFESGTFDPILAEIFLGFTQGIHRRPQXXX 2475
            K+ GPDGFQ IFFKQYWH++G+D+ N+V  AF+SG FDP +++  +              
Sbjct: 173  KAPGPDGFQCIFFKQYWHIVGDDIFNMVKTAFQSGYFDPAISDTLISLIP---------- 222

Query: 2474 XXXXXXXXISKVDSPRTFKDFRPISLCNTIYKLITKILVNRIRPVLEQIIGPYQSIFLPG 2295
                      K+D P +F+DFRPISLCN +YK+ITK+LV+R+RP+L  IIGPYQS FLPG
Sbjct: 223  ----------KIDPPTSFRDFRPISLCNVVYKIITKVLVHRLRPILNTIIGPYQSSFLPG 272

Query: 2294 RGTCDNAIVLQEALHSMHXXXXXKGGVAYKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIK 2115
            RGT DNAIVLQE +H M      KG VA+K+DLEKA+D+VNW+FL+SCL +FGFP+ TI+
Sbjct: 273  RGTSDNAIVLQEIIHFMRRSKRKKGYVAFKLDLEKAFDNVNWEFLKSCLHDFGFPDTTIQ 332

Query: 2114 LIMHCVSSSSLSLIWNGKRLPSFSPNRGLRQGDPLSPYLFVICMEKLAYAILDDVADRKW 1935
            LIMHCV+SS+ SL+WNG ++P F  + GLRQGDPLSPYLF++CMEKL+ AI + V    W
Sbjct: 333  LIMHCVTSSNFSLLWNGNKMPHFKSSHGLRQGDPLSPYLFILCMEKLSIAINNAVQQGNW 392

Query: 1934 KPVKLSKKGPALSHLFFADDVLLFSKATRSQASLVANIFQEFATASGLQVNVAKSRALFS 1755
             P+ +S  GP LSHL FADDVLLFSKA  SQ   + ++F  F+ ASGL++N++KSRA +S
Sbjct: 393  APIHISDNGPRLSHLLFADDVLLFSKAKNSQLRFITDLFDHFSRASGLKINLSKSRAFYS 452

Query: 1754 KSTTRAKVDSIVTITGIRSAVSFDKYLGFPMIQGRMTKNDFEFVVDKIQSRLASWKNKLL 1575
                  K++ + +I+GIRS VS DKYLGFP+++GR  ++DF F++DK+QSRLASWKNKLL
Sbjct: 453  AGIPHTKINKLTSISGIRSTVSLDKYLGFPILKGRAKRSDFHFIIDKMQSRLASWKNKLL 512

Query: 1574 IQAGRLTLAKSVLNSIPIYYMQVAWIPQSICTRIDNLTRS 1455
             + GRL LA SV++SIP YYMQ++W+PQSIC  ID  TR+
Sbjct: 513  NKLGRLALASSVISSIPSYYMQISWLPQSICDSIDQTTRN 552



 Score =  298 bits (763), Expect(2) = 0.0
 Identities = 142/310 (45%), Positives = 196/310 (63%), Gaps = 11/310 (3%)
 Frame = -3

Query: 1456 RDFIWKGSQDKGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKLWCH 1277
            R+FIW+ S +KGI+LV W  I + K HGGL IR AR  N ++LGKLVWD+ + +NKLW  
Sbjct: 551  RNFIWRDSNNKGIHLVSWKKIARPKQHGGLSIRTARGQNISLLGKLVWDMVQSSNKLWVD 610

Query: 1276 VLAEKYM-GLSSILEVSKKNGSLTWNSIMKARGVLKDGYDFRLGNGESSFWYDNWTPYGK 1100
            +L+ KY+ G + +L  +  +GS TW+SI++A+ +LKDG+ +R G+G SSFW  +WT  G+
Sbjct: 611  LLSSKYVKGSTFLLSGNNSSGSPTWSSIIQAKNILKDGFSWRAGSGTSSFWSSHWTTLGQ 670

Query: 1099 LSALVPFVDIHDTQLSIKDIVHDDSWQLQRLYTNIPQYVSDYIQAIQPCLNPTIDDGYTW 920
            L ALVP++DIHD QLSIKD++  +S     LYT +P  VSD I  I    N +IDD + W
Sbjct: 671  LGALVPYIDIHDLQLSIKDVLSTNSPHTHILYTQLPPSVSDLINNIHIKFNDSIDDAFIW 730

Query: 919  KGSLDGVYTTKSGFKWIVDKRQQVTDVRTILSWLWIWRLPVSEKIRFFFWTACHNTLPF- 743
              + +G YTTKSG+ W++  +  VT     LSW WIW+L + EKI+FFFW ACHN++P  
Sbjct: 731  TSNKNGSYTTKSGYNWLLSLQNLVTPHNPSLSWSWIWKLQLPEKIKFFFWLACHNSVPTL 790

Query: 742  ---------TVPNCQRCGCAIEDFLHCIRDCPVPRQIWFILGFCDPAFYQVTNSIDWLLA 590
                         C RCG   E FLHC+RDC     IW  +GF +P F+   ++ DWL  
Sbjct: 791  SLLNHRKMNLSATCARCGLREETFLHCVRDCDFSISIWHHIGFDNPYFFSSMDAHDWLKW 850

Query: 589  GAKSTVPQIF 560
            G+  +   IF
Sbjct: 851  GSTGSKAFIF 860


>gb|KYP54501.1| Transposon TX1 uncharacterized [Cajanus cajan]
          Length = 956

 Score =  423 bits (1088), Expect(3) = 0.0
 Identities = 225/494 (45%), Positives = 304/494 (61%), Gaps = 4/494 (0%)
 Frame = -2

Query: 2927 FHAQTIIRRKRNKIHGLFLPDGNWCIDDNILQQEAQRYFKRLFWTDS----LTDNTPQ*L 2760
            FHAQ ++R K +K+HGLFL  G WC D  +LQQ A  +++ LF        L D  P   
Sbjct: 274  FHAQAVVRWKCSKVHGLFLASGEWCTDAALLQQAAYSFYQTLFGEAEEVRPLRDPDP--- 330

Query: 2759 IHITTPRLDDHAVLALTQPVTHEEVRKALNTMHAYKSHGPDGFQGIFFKQYWHLIGNDVC 2580
                  RL+    L L  PV+ EEV +AL  M  YK+ GPDGFQ IF+K YW ++G+DV 
Sbjct: 331  ----LMRLNYDDQLLLGAPVSKEEVFQALMEMKPYKAPGPDGFQPIFYKMYWDVVGDDVW 386

Query: 2579 NLVIKAFESGTFDPILAEIFLGFTQGIHRRPQXXXXXXXXXXXISKVDSPRTFKDFRPIS 2400
            + V  AF +  FDP   E  +                      I K + PR  KDF+PIS
Sbjct: 387  SFVRTAFATSFFDPQAVETLI--------------------VLIPKHEGPRHLKDFQPIS 426

Query: 2399 LCNTIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVLQEALHSMHXXXXXKG 2220
            LCN ++KLI+K+LVNR+R +L +I+ P QS FL GR T DNAI++QE +HSM      +G
Sbjct: 427  LCNVLHKLISKVLVNRLRLILNRIVSPMQSSFLLGRSTNDNAILVQEIIHSMSKSQRVEG 486

Query: 2219 GVAYKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSSLSLIWNGKRLPSFSP 2040
             +  K+DLEKAYD V+W FLR  L++ GFP   I LIMH VSS+SL L+WNG++  + +P
Sbjct: 487  DLILKLDLEKAYDRVDWSFLRRVLIDLGFPPHIISLIMHGVSSASLCLLWNGQKTGTITP 546

Query: 2039 NRGLRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGPALSHLFFADDVLLFS 1860
             RGLRQGDPLSPYLFV+CME+L   I  +V +  W P +L + GPA+SHLFFADDVLLFS
Sbjct: 547  RRGLRQGDPLSPYLFVLCMERLGLLITKEVEEGSWSPYRL-RGGPAVSHLFFADDVLLFS 605

Query: 1859 KATRSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDSIVTITGIRSAVSFDK 1680
            KA  S    +  +   F  ASG++VN++KS A  S+  +  +   +  I+ I  + S  K
Sbjct: 606  KAKTSSMRTIMKVIDLFCDASGMRVNLSKSMAFASQRVSPVRRRRLARISQIHFSSSLGK 665

Query: 1679 YLGFPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAKSVLNSIPIYYMQVAW 1500
            YLG+ M+ GR+    F+ +V+K+Q RL+SW+ +LL +A RL L  SVL SIP Y M + W
Sbjct: 666  YLGYRMVHGRVKSQHFQDLVEKVQQRLSSWRGRLLNKARRLALVNSVLTSIPTYNMHIQW 725

Query: 1499 IPQSICTRIDNLTR 1458
            +P  +C ++D L R
Sbjct: 726  LPNQVCEKLDMLAR 739



 Score =  256 bits (655), Expect(3) = 0.0
 Identities = 131/272 (48%), Positives = 174/272 (63%)
 Frame = -1

Query: 3744 ADTITIKLKVGDDSWLFTGVYASPVYTNRLQLWDHLISLHDHVTEPWLLMGDFNEILLPS 3565
            +  ++I +K    SW+FTGVYASP    R ++W  L  L +     WLL+GDFN+I++ S
Sbjct: 3    SQAVSISIKTSGQSWIFTGVYASPSSPARREMWHQLNMLRETSQSAWLLIGDFNDIMVAS 62

Query: 3564 EQRGGNIYQNRADDFLRVLDACSLTDMPSTGGNFTWNRPCRGQRRVSKKLDRAVASITWR 3385
            EQRGG     RAD F + L+ C L D+   G  FTW+R   G   + K+LDRAV  I +R
Sbjct: 63   EQRGGTFDIGRADIFAQQLELCGLLDLNLMGAKFTWHRRRNGLS-LHKRLDRAVCDILFR 121

Query: 3384 HLFSEAFVEVLCRHHSDHNPILVRCGGLPQNRGVRPFRFEAAWITHPEYQDVVKRARSIE 3205
              F EA VEVL R HSDHNP+L+RCGG PQ RG  PFRF+AAW TH  Y  VV  A +  
Sbjct: 122  TKFPEAVVEVLPRGHSDHNPLLLRCGGFPQPRGDLPFRFKAAWCTHAAYCKVVHDAWNCH 181

Query: 3204 NSDPVLALHRVKEESIIFNNEIFGSIWKRKNALERRLEGVQKALDRIDSARLVYLEHQLQ 3025
            + + + AL++V+  SI FN E+FG+I+ RK  L+ R+ G+++ L+RIDS R   L H LQ
Sbjct: 182  SGNVLNALNQVRMASITFNQEVFGNIFVRKRELQARIRGLERYLERIDSVRSWALYHDLQ 241

Query: 3024 KNYDTIPAQEELHWYQKSREKWIQLGDRNTKI 2929
            + Y+T   QEE  WYQK RE+WI+L  RNT +
Sbjct: 242  QQYETCLFQEETLWYQKYREQWIKLSSRNTSL 273



 Score =  146 bits (368), Expect(3) = 0.0
 Identities = 73/221 (33%), Positives = 124/221 (56%), Gaps = 1/221 (0%)
 Frame = -3

Query: 1462 LDRDFIWKGSQDKGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKLW 1283
            L R F+W G   +G++LV W++ T+ +  GGLG+R  R  N A++GK VWDL     KLW
Sbjct: 737  LARRFLWSGQDKRGLHLVKWETSTQRRKDGGLGVRPTRLQNVALIGKQVWDLMYKLEKLW 796

Query: 1282 CHVLAEKYMGLSSILEVSKKNGSLTWNSIMKARGVLKDGYDFRLGNGESSFWYDNWTPYG 1103
             H +  KY+G + I  + + +GS   +S+ KA   L++G+  RLG GE SFW++ W    
Sbjct: 797  VHFVKWKYLG-ADITSMLQHSGSFFLSSLRKAYEALEEGFHLRLGQGECSFWFNPWIDGS 855

Query: 1102 KLSALVPFVDIHDTQLSIKDIVHDDS-WQLQRLYTNIPQYVSDYIQAIQPCLNPTIDDGY 926
             LS+ + ++D++D  L ++ +V  D    L R+ + +   + + +  ++  L+  I D  
Sbjct: 856  PLSSRMTYIDLNDVDLEVRHVVSSDGCCDLARIASPLIDDLRELLSHLRLYLHHDIPDVL 915

Query: 925  TWKGSLDGVYTTKSGFKWIVDKRQQVTDVRTILSWLWIWRL 803
             W+G   GVY+  +G+ W++ +     D     SW W+W+L
Sbjct: 916  AWQGDESGVYSVCTGYAWLLARSTPRRDG----SWGWLWKL 952


>gb|KYP46979.1| LINE-1 reverse transcriptase isogeny [Cajanus cajan]
          Length = 887

 Score =  459 bits (1180), Expect(3) = 0.0
 Identities = 234/492 (47%), Positives = 321/492 (65%)
 Frame = -2

Query: 2933 KFFHAQTIIRRKRNKIHGLFLPDGNWCIDDNILQQEAQRYFKRLFWTDSLTDNTPQ*LIH 2754
            KFFH QT++RRKRNKIHGL+L DG W  D + L++ A+ Y+  LF T+++T + P   + 
Sbjct: 234  KFFHTQTLVRRKRNKIHGLYLNDGTWTTDPDTLRRYAKEYYIELF-TNNITCSPPLFQVQ 292

Query: 2753 ITTPRLDDHAVLALTQPVTHEEVRKALNTMHAYKSHGPDGFQGIFFKQYWHLIGNDVCNL 2574
               P+L++ A   L  PV ++EV++ +  M   K+ GPDGFQ  F+K++W ++G D+ NL
Sbjct: 293  -RCPQLNEEAYNRLLNPVIYDEVKQVITKMSPLKAPGPDGFQAFFYKKFWPIVGRDLHNL 351

Query: 2573 VIKAFESGTFDPILAEIFLGFTQGIHRRPQXXXXXXXXXXXISKVDSPRTFKDFRPISLC 2394
            V KAF  G  D  L +  +                      I K ++P  FKDF+PISLC
Sbjct: 352  VQKAFSQGRADQGLLDTHI--------------------VLIPKSENPMHFKDFKPISLC 391

Query: 2393 NTIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVLQEALHSMHXXXXXKGGV 2214
            +  YK+I+K+LV+RIRP L  IIGP+QS F+PGRGT DN I+ QEA+H++H     KG +
Sbjct: 392  DVTYKVISKVLVDRIRPYLSSIIGPFQSSFIPGRGTSDNLILAQEAVHNIHNDKSRKGMI 451

Query: 2213 AYKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSSLSLIWNGKRLPSFSPNR 2034
              KIDLEKAYD V+W FLR  L  FGFP    +LIM  V+   L ++WNG  L  F+P+R
Sbjct: 452  MVKIDLEKAYDRVSWSFLRETLDLFGFPRLITQLIMWGVTGPDLKILWNGSSLEGFAPSR 511

Query: 2033 GLRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGPALSHLFFADDVLLFSKA 1854
            GLRQGDPLSPYLFV+CME+LA  + + V    WKP  LS+ GP LSHL FADD+LLF +A
Sbjct: 512  GLRQGDPLSPYLFVLCMERLALKVSELVDINSWKPAHLSRGGPPLSHLMFADDLLLFGEA 571

Query: 1853 TRSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDSIVTITGIRSAVSFDKYL 1674
            T  QA ++    +EF  ASGL++N  KS+ + SK+ + ++++ +  + GI+ A S  KYL
Sbjct: 572  TEDQARVMERTLEEFCRASGLKINQQKSKFVCSKNISNSRLEELEKLLGIKKANSLGKYL 631

Query: 1673 GFPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAKSVLNSIPIYYMQVAWIP 1494
            G  +I GR T  DFE V++K++SR+ASWK KLL +AGR  LAKSV+ SIP+Y MQ  W+P
Sbjct: 632  GHNLISGRATNKDFEHVINKVRSRIASWKGKLLNRAGRTCLAKSVITSIPVYTMQAYWLP 691

Query: 1493 QSICTRIDNLTR 1458
            Q  C  ++ L R
Sbjct: 692  QRTCDLLNQLYR 703



 Score =  218 bits (555), Expect(3) = 0.0
 Identities = 110/229 (48%), Positives = 150/229 (65%)
 Frame = -1

Query: 3618 VTEPWLLMGDFNEILLPSEQRGGNIYQNRADDFLRVLDACSLTDMPSTGGNFTWNRPCRG 3439
            +T PWL++GDFNEI+   E RGG      A   + V+D C L D+  +G  FTW R  +G
Sbjct: 7    ITLPWLVIGDFNEIISVDEVRGGIFVPYMAARMINVIDTCQLMDIGCSGTKFTWIRVNKG 66

Query: 3438 QRRVSKKLDRAVASITWRHLFSEAFVEVLCRHHSDHNPILVRCGGLPQNRGVRPFRFEAA 3259
             R ++K+LDRA+A   W   F EA+ E LCR +SDH PILVR GG+  N   RPFRF+AA
Sbjct: 67   TR-MAKRLDRALADSAWLVTFPEAYAEALCRVYSDHCPILVRSGGIKDNHRDRPFRFQAA 125

Query: 3258 WITHPEYQDVVKRARSIENSDPVLALHRVKEESIIFNNEIFGSIWKRKNALERRLEGVQK 3079
            W +H +Y  VV++A    + +  L+L +V+E+S+ FN E+FG+I+KRK+ +  RL  V K
Sbjct: 126  WTSHKDYNQVVRKAWEKRSPNLCLSLKQVEEDSLKFNKEVFGNIFKRKSRVIARLNSVHK 185

Query: 3078 ALDRIDSARLVYLEHQLQKNYDTIPAQEELHWYQKSREKWIQLGDRNTK 2932
            AL+  DS+ L  LE  LQ  Y+ I  QEE  W+QKSRE+W++ GDRNTK
Sbjct: 186  ALEEHDSSDLNQLEKALQDEYNNILLQEEYIWFQKSREQWVRFGDRNTK 234



 Score =  133 bits (334), Expect(3) = 0.0
 Identities = 77/183 (42%), Positives = 98/183 (53%), Gaps = 2/183 (1%)
 Frame = -3

Query: 1462 LDRDFIW-KGSQDKGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKL 1286
            L R  IW K       NLV W  +TK K HGGLGIR AR  N A+LGKL+W         
Sbjct: 701  LYRRCIWSKDGTSHSWNLVNWSQVTKPKAHGGLGIREARNMNIALLGKLIWKYIMNPETP 760

Query: 1285 WCHVLAEKYMGLSSIL-EVSKKNGSLTWNSIMKARGVLKDGYDFRLGNGESSFWYDNWTP 1109
            W   L  KY+  +SIL  ++ K  S  W SI KA   LK G+  +LG G SS +YDNW  
Sbjct: 761  WVKFLKHKYLKSNSILIPLTFKCPSYIWKSINKAVEFLKSGFKPKLGTGGSSVFYDNWLG 820

Query: 1108 YGKLSALVPFVDIHDTQLSIKDIVHDDSWQLQRLYTNIPQYVSDYIQAIQPCLNPTIDDG 929
             G L   VPFV I DTQL++ D+  ++ W L  L+TNI + +   I  ++  L P   D 
Sbjct: 821  VGPLYTKVPFVHISDTQLNLVDLWANNEWNLPILHTNITKDIEQKILRVKIPLTPVGQDT 880

Query: 928  YTW 920
            + W
Sbjct: 881  FRW 883


>gb|PNY06442.1| ribonuclease H [Trifolium pratense]
          Length = 790

 Score =  419 bits (1076), Expect(2) = 0.0
 Identities = 215/446 (48%), Positives = 291/446 (65%)
 Frame = -2

Query: 2930 FFHAQTIIRRKRNKIHGLFLPDGNWCIDDNILQQEAQRYFKRLFWTDSLTDNTPQ*LIHI 2751
            FFHAQTIIRRKRNKIHG+ L  G WC D ++++ EA  +FK LF        T    + I
Sbjct: 365  FFHAQTIIRRKRNKIHGIKLQTGEWCTDPDLMKTEALNFFKDLFCNTQQVSTTSDEDVVI 424

Query: 2750 TTPRLDDHAVLALTQPVTHEEVRKALNTMHAYKSHGPDGFQGIFFKQYWHLIGNDVCNLV 2571
            T   LD+ A+  L +PVT  EV +AL +M +YK+ GPDGFQ IFFK +W +IG+D+ N V
Sbjct: 425  T---LDEFAISELVKPVTKAEVHEALMSMKSYKAPGPDGFQPIFFKLFWDVIGDDMWNFV 481

Query: 2570 IKAFESGTFDPILAEIFLGFTQGIHRRPQXXXXXXXXXXXISKVDSPRTFKDFRPISLCN 2391
              AFE+G++DP++ E  +                      + K +S RTFKDFRPISLCN
Sbjct: 482  KAAFENGSYDPMVCETLI--------------------VLLPKGESQRTFKDFRPISLCN 521

Query: 2390 TIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVLQEALHSMHXXXXXKGGVA 2211
              YKLI+KI+V R+RP L+ I+ P Q+ F+PGR T DNAIVLQE LH M       G + 
Sbjct: 522  VTYKLISKIIVARLRPFLDGIVSPLQNSFIPGRSTKDNAIVLQEVLHFMKKSKKKNGDMV 581

Query: 2210 YKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSSLSLIWNGKRLPSFSPNRG 2031
            +K+DLEKAYD V+W FLR  LV+F FP+  I LIM  ++SSS +++WNG +   F+P RG
Sbjct: 582  FKLDLEKAYDRVDWRFLRDTLVKFNFPSTIISLIMFGITSSSNTILWNGSKTDQFTPTRG 641

Query: 2030 LRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGPALSHLFFADDVLLFSKAT 1851
            LRQGDPLSPYLFV+CME+L   I + V    WKP+++++ G  L+HLFFADDVLLF KA 
Sbjct: 642  LRQGDPLSPYLFVLCMERLGALINNQVRVANWKPMQMTRHGTKLTHLFFADDVLLFGKAN 701

Query: 1850 RSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDSIVTITGIRSAVSFDKYLG 1671
             +QA ++  + ++F   SGL++++ KS+   S   TR   DSI + T I++   F+KYLG
Sbjct: 702  AAQARVIDGVLKKFCDISGLKISLEKSKFCTSLGVTRHIRDSISSCTQIQATTRFEKYLG 761

Query: 1670 FPMIQGRMTKNDFEFVVDKIQSRLAS 1593
            F M  G++ K DF  V D++ ++LAS
Sbjct: 762  FKMFYGKVRKQDFGDVYDRVNAKLAS 787



 Score =  346 bits (887), Expect(2) = 0.0
 Identities = 166/363 (45%), Positives = 228/363 (62%)
 Frame = -1

Query: 4023 LMIGFQDVSLLSWNIWGAHNSKAKRHLMDLIRKFKPTILIIMETHIAFARTVAFWTRAGY 3844
            +M  F D S+L+WN+ G  N K+  H+ D++ ++KP I+ + ETH  FA    FW R GY
Sbjct: 1    MMGAFNDFSILAWNVRGFANRKSWTHMHDMVSRYKPDIIFLFETHTPFASAERFWAREGY 60

Query: 3843 SSVAVVEPRGLSGGLWILRQNGSNVSISIFDVFADTITIKLKVGDDSWLFTGVYASPVYT 3664
              + ++E +G SGG+W+L++ G+  + S+  +    ++  +  G + WL + VYASPVYT
Sbjct: 61   DKIEILEAQGHSGGIWVLQRQGNGYNFSVVRMMHQCVSFTISKGIEKWLCSAVYASPVYT 120

Query: 3663 NRLQLWDHLISLHDHVTEPWLLMGDFNEILLPSEQRGGNIYQNRADDFLRVLDACSLTDM 3484
             R  LWDHL  L   V  PWL++GD N+ILLP EQRGG    ++AD F R +D C L D+
Sbjct: 121  GRALLWDHLDQLAKDVVLPWLVLGDLNDILLPREQRGGVFSASKADVFSRNIDRCGLIDL 180

Query: 3483 PSTGGNFTWNRPCRGQRRVSKKLDRAVASITWRHLFSEAFVEVLCRHHSDHNPILVRCGG 3304
             S G  FTW   CRG R VS++LDR + +  WR  F EA VE L R HSDHNP+L+R   
Sbjct: 181  GSFGSKFTWQGHCRGGRLVSRRLDRGLCNHDWRMNFPEATVEHLVRRHSDHNPLLLRSNN 240

Query: 3303 LPQNRGVRPFRFEAAWITHPEYQDVVKRARSIENSDPVLALHRVKEESIIFNNEIFGSIW 3124
            +  +R  RPFRF+A+W TH +Y  +VK   + E       L  V ++S  FNN +FG+I+
Sbjct: 241  VMTSREGRPFRFQASWFTHTDYPPLVKDTWTNERGSIARCLQSVAQKSTEFNNNVFGNIF 300

Query: 3123 KRKNALERRLEGVQKALDRIDSARLVYLEHQLQKNYDTIPAQEELHWYQKSREKWIQLGD 2944
             RK  +E RL GVQ+AL+ IDSA L+ L+  L   YD I  QEE  W+QKSRE+WI+LG 
Sbjct: 301  TRKKEVEARLRGVQRALENIDSANLLRLQKDLLIEYDNILFQEETFWFQKSREQWIKLGS 360

Query: 2943 RNT 2935
            RNT
Sbjct: 361  RNT 363


>ref|XP_020240638.1| uncharacterized protein LOC109819343 [Cajanus cajan]
          Length = 1254

 Score =  386 bits (991), Expect(3) = 0.0
 Identities = 220/491 (44%), Positives = 288/491 (58%)
 Frame = -2

Query: 2930 FFHAQTIIRRKRNKIHGLFLPDGNWCIDDNILQQEAQRYFKRLFWTDSLTDNTPQ*LIHI 2751
            FFHAQT+ RR+RNKI GLFLPDG+W  D  +++ E  R+ K LF   S  +  P  +   
Sbjct: 301  FFHAQTLARRRRNKIQGLFLPDGSWHTDPMVMKNETVRFDKELF--SSNNEQGPFYMHAG 358

Query: 2750 TTPRLDDHAVLALTQPVTHEEVRKALNTMHAYKSHGPDGFQGIFFKQYWHLIGNDVCNLV 2571
              P L   A  ALT PVT EEVR+A+  M ++K+   DGFQ  FFKQYW ++G ++  +V
Sbjct: 359  VPPGLGVEAQSALTAPVTKEEVRRAVMRMKSFKAPRSDGFQSFFFKQYWPIVGEELWRIV 418

Query: 2570 IKAFESGTFDPILAEIFLGFTQGIHRRPQXXXXXXXXXXXISKVDSPRTFKDFRPISLCN 2391
              AF  G  D  L E     TQ +                I KVD P             
Sbjct: 419  KDAFRLGFSDISLLE-----TQMV---------------LIPKVDHP------------- 445

Query: 2390 TIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVLQEALHSMHXXXXXKGGVA 2211
                                +IGP+Q  F+PGRGT D++I+ QEA+H +       G +A
Sbjct: 446  -------------------DVIGPFQGSFIPGRGTRDHSIIAQEAVHFVRKDGSGVGSLA 486

Query: 2210 YKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSSLSLIWNGKRLPSFSPNRG 2031
             KIDLEKAYD V WDFL S LV+FGFP  T +LIM  + +SS     NG  LPSF P+RG
Sbjct: 487  LKIDLEKAYDRVKWDFLESTLVQFGFPTVTTQLIMWGLKNSSR----NGSTLPSFVPSRG 542

Query: 2030 LRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGPALSHLFFADDVLLFSKAT 1851
            LRQGDPLSPYLFV CME+LA  I + +    WK ++LS  G  LSHL FADD+LLF +AT
Sbjct: 543  LRQGDPLSPYLFVFCMERLALRISELLQMGHWKSIQLSPGGLPLSHLLFADDILLFCQAT 602

Query: 1850 RSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDSIVTITGIRSAVSFDKYLG 1671
              QA LVA+  +EF+ +SGL+VN+ KS+ + S+  +  ++D++  + GI       KYLG
Sbjct: 603  EDQARLVASTLEEFSWSSGLRVNLTKSKFVSSRRVSHRRIDALEGLLGIGHTAQIGKYLG 662

Query: 1670 FPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAKSVLNSIPIYYMQVAWIPQ 1491
             PM  G+    DF  V+DKIQ RLA+WK+KLL +AG+L L KS ++SIP+Y MQ  W+PQ
Sbjct: 663  VPMTHGQPRCADFYDVMDKIQGRLAAWKSKLLNKAGKLCLVKSTISSIPVYSMQTLWLPQ 722

Query: 1490 SICTRIDNLTR 1458
            ++C RID   R
Sbjct: 723  AVCNRIDQACR 733



 Score =  234 bits (596), Expect(3) = 0.0
 Identities = 130/300 (43%), Positives = 175/300 (58%), Gaps = 2/300 (0%)
 Frame = -1

Query: 3828 VEPRGLSGGLWILRQNGSNVSISIFDVFADTITIKLKVGDDSWLFTGVYASPVYTNRLQL 3649
            +E  G SGG+W+L     +  I  F      I+  +  G  SW+ T VYASP    R ++
Sbjct: 9    MEATGHSGGIWVLMAMSCSAKIFDFASHPQAISFTVVEGSKSWVCTAVYASPRVELRQRV 68

Query: 3648 WDHLISLHDHVTEPWLLMGDFNEILLPSEQRGGNIYQNRADDFLRVLDACSLTDMPSTGG 3469
            W HL  L   +T PWL++GDFNEI+L +E RGG     RA  FL VL+ C+L DM + G 
Sbjct: 69   WAHLRELGGRITLPWLVLGDFNEIMLSTECRGGRFSTARASQFLEVLNDCNLLDMGAKGL 128

Query: 3468 NFTWNRPCRGQRRVSKKLDRAVASITWRHLFSEAFVEVLCRHHSDHNPILVRCGGLPQNR 3289
             FTW         ++K+LD AV ++ W+ +F EA+VE LCR + DH P+L+R  G     
Sbjct: 129  RFTWVV-------LAKRLDCAVCNVAWQAMFPEAYVENLCRVYCDHCPLLLRREGSRDKA 181

Query: 3288 GVRPFRFEAAWITHPEYQDVVKRARSIENSDPVLA--LHRVKEESIIFNNEIFGSIWKRK 3115
              RPF+FEAAW TH  ++ +V+ A     S P LA  L  V+ ++I FN E+FG+I  RK
Sbjct: 182  QDRPFQFEAAWATHKGFERIVREAWG--RSTPTLANGLQAVRVDAIKFNKEVFGNIITRK 239

Query: 3114 NALERRLEGVQKALDRIDSARLVYLEHQLQKNYDTIPAQEELHWYQKSREKWIQLGDRNT 2935
             AL+RRL GVQ  L+  +S  L  LE  +Q   D    QEE  W+ KSREKW++ GDRNT
Sbjct: 240  KALQRRLRGVQLQLEIGESESLSRLEKTIQAELDETCLQEEYLWFHKSREKWVRFGDRNT 299



 Score =  160 bits (406), Expect(3) = 0.0
 Identities = 86/278 (30%), Positives = 137/278 (49%), Gaps = 12/278 (4%)
 Frame = -3

Query: 1456 RDFIWKGSQDKGI-NLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKLWC 1280
            R  +W  S +    + V W  +T+ K  GGLG+R AR  N ++LGKLVWDL     K W 
Sbjct: 733  RRMLWSKSDNTRFWSPVSWAVVTQPKELGGLGVREARRVNVSLLGKLVWDLLTAPQKPWV 792

Query: 1279 HVLAEKYMGLSSILEVSKKNG-SLTWNSIMKARGVLKDGYDFRLGNGESSFWYDNWTPYG 1103
             +L   Y+  +SIL    + G S  W+S++KA   L++G++ +LG+G SS WY +W+  G
Sbjct: 793  QILNSLYLHGNSILCAQNRRGASPIWSSLVKALPSLREGFEPQLGSGASSLWYTDWSGTG 852

Query: 1102 KLSALVPFVDIHDTQLSIKDIVHDDSWQLQRLYTNIPQYVSDYIQAIQPCLNPTIDDGYT 923
                 V F+ I D   ++ D      W    L+T +P  +   +Q +    +    D + 
Sbjct: 853  LWCGRVSFIHIADINKTVADCWVSGVWNFTNLHTVLPTELLSSVQRLTVVNSSLGLDHFV 912

Query: 922  WKGSLDGVYTTKSGFKWIVDKRQQVTDVRTILSWLWIWRLPVSEKIRFFFWTACHNTLPF 743
            W+G   G YT  +G++++     +V   +  + W  +W+L + EK++F  W   H+ LP 
Sbjct: 913  WRGDNSGCYTAAAGYRFLT----RVLSTKGDVVWKKVWKLMIIEKVKFLLWQCLHSALPT 968

Query: 742  TVPN----------CQRCGCAIEDFLHCIRDCPVPRQI 659
                          C  C C  E  LH +RDCP  R++
Sbjct: 969  NQVRADRRLTESGACSHCSCPHETILHALRDCPYSREV 1006


>dbj|GAU48983.1| hypothetical protein TSUD_245740 [Trifolium subterraneum]
          Length = 1103

 Score =  404 bits (1037), Expect(3) = 0.0
 Identities = 212/491 (43%), Positives = 292/491 (59%)
 Frame = -2

Query: 2930 FFHAQTIIRRKRNKIHGLFLPDGNWCIDDNILQQEAQRYFKRLFWTDSLTDNTPQ*LIHI 2751
            FFHAQ IIRRKRNKIHG+ L  G WC D  +++ EA  +FK LF T+ +           
Sbjct: 245  FFHAQCIIRRKRNKIHGIRLSSGEWCTDPEVMKTEALNFFKELFCTNQIVAREGN---VN 301

Query: 2750 TTPRLDDHAVLALTQPVTHEEVRKALNTMHAYKSHGPDGFQGIFFKQYWHLIGNDVCNLV 2571
                LDD A+  L +P++ +EV  AL +M +YK+ GPDGFQ IFFK +W+ IG+D+   V
Sbjct: 302  GMAVLDDDALQELARPISKKEVFDALMSMKSYKAPGPDGFQPIFFKLFWNDIGDDIWQFV 361

Query: 2570 IKAFESGTFDPILAEIFLGFTQGIHRRPQXXXXXXXXXXXISKVDSPRTFKDFRPISLCN 2391
              AF +G +DP + E  +                      + K D   TFKDFRPISLCN
Sbjct: 362  QSAFANGRYDPKVCENLI--------------------VLLPKGDRQVTFKDFRPISLCN 401

Query: 2390 TIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVLQEALHSMHXXXXXKGGVA 2211
              YKLI+K++V+R+RP L+ II P Q+ F+P                             
Sbjct: 402  VTYKLISKVIVSRLRPFLDGIISPLQNSFIP----------------------------- 432

Query: 2210 YKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSSLSLIWNGKRLPSFSPNRG 2031
                 EKAYD VNW FL+  LV F FP   I LIM  ++S+S +++WNG +  +F+P RG
Sbjct: 433  -----EKAYDRVNWSFLKDTLVMFKFPPSVISLIMFGITSTSNTILWNGSKAEAFTPKRG 487

Query: 2030 LRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGPALSHLFFADDVLLFSKAT 1851
            LRQGDPLSPYLFV+CME+L   I   VAD  W P++++K    +SHLFFADDVLLF KA 
Sbjct: 488  LRQGDPLSPYLFVLCMERLGALISKHVADGSWSPMQITKDRTRISHLFFADDVLLFEKAN 547

Query: 1850 RSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDSIVTITGIRSAVSFDKYLG 1671
             SQA +V  + + F   SGL++++ KS+   S   +R + + I  +T I +   F+KYLG
Sbjct: 548  VSQARIVNEVLERFCAMSGLKISLEKSKFCTSAGVSRRRREDIAVVTQIHAIDKFEKYLG 607

Query: 1670 FPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAKSVLNSIPIYYMQVAWIPQ 1491
            F M  G++ K DF  V D++ ++LASWK++LL +AGR+ LA SVL+S+P Y+MQ+ W+PQ
Sbjct: 608  FKMFYGKVRKQDFSNVYDRVSAKLASWKSRLLNKAGRVVLANSVLSSLPSYHMQINWLPQ 667

Query: 1490 SICTRIDNLTR 1458
             +C  +D   R
Sbjct: 668  GMCDDLDRTVR 678



 Score =  194 bits (492), Expect(3) = 0.0
 Identities = 95/200 (47%), Positives = 130/200 (65%)
 Frame = -1

Query: 3534 RADDFLRVLDACSLTDMPSTGGNFTWNRPCRGQRRVSKKLDRAVASITWRHLFSEAFVEV 3355
            +A+ F   +D C L D+ S    FTW   CRG R V ++LDR+  ++ WR  F EA VE 
Sbjct: 44   QAEIFNTNIDNCGLIDLGSFSTKFTWQGHCRGGRIVHRRLDRSFCNLDWRLKFPEATVEH 103

Query: 3354 LCRHHSDHNPILVRCGGLPQNRGVRPFRFEAAWITHPEYQDVVKRARSIENSDPVLALHR 3175
            L R HSDHNPIL+RC         RPFRF+AAW TH +Y  +VK   S + ++ +  L  
Sbjct: 104  LVRRHSDHNPILLRCSNAMTCHEGRPFRFQAAWFTHSDYPQLVKNTWSRDRNNIIGCLQN 163

Query: 3174 VKEESIIFNNEIFGSIWKRKNALERRLEGVQKALDRIDSARLVYLEHQLQKNYDTIPAQE 2995
            V +ESI FN E+FG+I+ RK  +E RL+G+Q+AL+ IDSA L+ L+ +L  +Y+ I  QE
Sbjct: 164  VAQESITFNKEVFGNIFARKKEVEARLQGIQRALENIDSANLLRLQKELLTSYENILFQE 223

Query: 2994 ELHWYQKSREKWIQLGDRNT 2935
            E  W+QKSRE+W++LG RNT
Sbjct: 224  EALWFQKSREQWVKLGSRNT 243



 Score =  179 bits (453), Expect(3) = 0.0
 Identities = 83/190 (43%), Positives = 118/190 (62%)
 Frame = -3

Query: 1456 RDFIWKGSQDKGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKLWCH 1277
            R FIWKG+ D G++LVGW+ IT+ +  GGLG+R+AR  N ++LGKL+W++     KLW  
Sbjct: 678  RRFIWKGTGDTGMHLVGWEKITQPRRFGGLGVRIARLQNVSLLGKLIWEISNSPGKLWVK 737

Query: 1276 VLAEKYMGLSSILEVSKKNGSLTWNSIMKARGVLKDGYDFRLGNGESSFWYDNWTPYGKL 1097
            +  +KY     +  VS   GS  WNS+ KA  +L+DG+ F++G+G S FWY  W     L
Sbjct: 738  LFIDKYTKGRHLFNVSVSGGSCIWNSLAKALHMLRDGFTFKIGDGNSRFWYYPWALKENL 797

Query: 1096 SALVPFVDIHDTQLSIKDIVHDDSWQLQRLYTNIPQYVSDYIQAIQPCLNPTIDDGYTWK 917
             + VPFV I DT L I D+  +  W L++LYT+IP    + I  +QP +   I D + W+
Sbjct: 798  CSTVPFVAIQDTDLKINDVWCNGRWHLEKLYTSIPDEARNSILLLQPYIVNDIPDVWVWQ 857

Query: 916  GSLDGVYTTK 887
             S +GVYTTK
Sbjct: 858  NSSNGVYTTK 867



 Score = 94.7 bits (234), Expect(2) = 1e-15
 Identities = 46/119 (38%), Positives = 74/119 (62%)
 Frame = -1

Query: 378  NLGQAGFGGILRTNEGKWIRGFSDNIGFSNSLHAKLLGLYRGLSFTWDQGYCLVKCYSDS 199
            +L  AGFGG++R +   +++GF      S+ L+A+++ +  GL   W+ GY  + CYSDS
Sbjct: 957  SLQTAGFGGLIRNSFSAFLKGFYGTASQSSVLYAEIMAILHGLHLCWNNGYRSIVCYSDS 1016

Query: 198  ALSIHLVT*PLNKWHFYAAIIKNVSELLSRN*NVVLVHTLREGNACADYLAKLGASGTS 22
              ++ L+   ++ +H +A  I  + +LL R+  +V+ H LREGNACAD LAK G+S  S
Sbjct: 1017 LQAVSLIKDGVSHFHTFANEIHPIRQLLRRDWTIVIEHILREGNACADVLAKKGSSTNS 1075



 Score = 20.8 bits (42), Expect(2) = 1e-15
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 449  ERSVTWHPEKDCDVILNVDGSCLAT 375
            +R V W    +  V LNV GS L +
Sbjct: 933  QRLVVWPRPAEGTVCLNVHGSMLGS 957


>dbj|GAU41508.1| hypothetical protein TSUD_302460 [Trifolium subterraneum]
          Length = 1075

 Score =  584 bits (1505), Expect(2) = 0.0
 Identities = 288/507 (56%), Positives = 365/507 (71%), Gaps = 3/507 (0%)
 Frame = -2

Query: 2969 EKNGFNWVIATQK---FFHAQTIIRRKRNKIHGLFLPDGNWCIDDNILQQEAQRYFKRLF 2799
            +K+   WV    K   FFHAQTIIRRKRN+IH L LP+G W  D +ILQ EAQ YFK LF
Sbjct: 140  QKSREQWVKLGDKNSSFFHAQTIIRRKRNRIHKLQLPNGTWSSDSSILQHEAQNYFKNLF 199

Query: 2798 WTDSLTDNTPQ*LIHITTPRLDDHAVLALTQPVTHEEVRKALNTMHAYKSHGPDGFQGIF 2619
               S   NT       T P +D+    +L++PVT EEV  ALN+M  YK+ GPDGFQ IF
Sbjct: 200  --SSSQHNTSSSFNVGTHPTIDEDGRNSLSKPVTKEEVTAALNSMKPYKAPGPDGFQCIF 257

Query: 2618 FKQYWHLIGNDVCNLVIKAFESGTFDPILAEIFLGFTQGIHRRPQXXXXXXXXXXXISKV 2439
            FKQYWHL+G+D+ +LV  AF +G FDP +++  +                        K+
Sbjct: 258  FKQYWHLVGDDIFDLVKTAFHTGYFDPTISDTLISLIP--------------------KI 297

Query: 2438 DSPRTFKDFRPISLCNTIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVLQE 2259
            DSP T++DFRPISLCN +YK+ITK+LV+R+RP+L+ IIGPYQS FLPGRGT DNAIVLQE
Sbjct: 298  DSPTTYRDFRPISLCNIVYKIITKVLVHRLRPILDSIIGPYQSSFLPGRGTSDNAIVLQE 357

Query: 2258 ALHSMHXXXXXKGGVAYKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSSLS 2079
             +H M      KG VA+K+DLEKA+D+VNWDFL+SCL +FGFPN TI+LIMHCV+SS+ S
Sbjct: 358  IIHFMRRSKRKKGFVAFKLDLEKAFDNVNWDFLKSCLHDFGFPNITIRLIMHCVTSSNFS 417

Query: 2078 LIWNGKRLPSFSPNRGLRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGPAL 1899
            L+WNG +LPSF P  GLRQGDPLSPYLF++CMEKL+ +I   V    W P+++S  GP L
Sbjct: 418  LLWNGNKLPSFKPTHGLRQGDPLSPYLFILCMEKLSISINSVVHQGAWDPIRISNTGPHL 477

Query: 1898 SHLFFADDVLLFSKATRSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDSIV 1719
            SHL FADDVLLF+KA  SQ   + N+F  F  ASGL++N++KSRA +S    +AK++ + 
Sbjct: 478  SHLLFADDVLLFTKAKNSQIRFITNLFDRFGLASGLKINLSKSRAFYSSGIPQAKINKLT 537

Query: 1718 TITGIRSAVSFDKYLGFPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAKSV 1539
            +++GIRS VS DKYLGFP+++GR  +NDF F++DK+QSRLASWKN+LL + GRL LA SV
Sbjct: 538  SLSGIRSTVSLDKYLGFPILKGRAKRNDFNFIIDKMQSRLASWKNRLLNKPGRLALASSV 597

Query: 1538 LNSIPIYYMQVAWIPQSICTRIDNLTR 1458
            L+SIP YYMQ+AW+PQSIC  ID  TR
Sbjct: 598  LSSIPTYYMQIAWLPQSICDSIDQTTR 624



 Score =  168 bits (425), Expect(2) = 0.0
 Identities = 77/140 (55%), Positives = 104/140 (74%), Gaps = 1/140 (0%)
 Frame = -3

Query: 1456 RDFIWKGSQDKGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKLWCH 1277
            R F+WK S +KGI+LVGW+ I + K  GGLGIR ARE NT++LGKLVWD+ + +NKLW +
Sbjct: 624  RKFLWKDSNNKGIHLVGWNKIARPKNLGGLGIRPAREANTSLLGKLVWDMVQSSNKLWVN 683

Query: 1276 VLAEKYMGLSSILEV-SKKNGSLTWNSIMKARGVLKDGYDFRLGNGESSFWYDNWTPYGK 1100
            +L+ KY+    IL   S   GS TW+SI+ A+ VLKDG+ +R G+G SSFW+ +W+P G 
Sbjct: 684  LLSNKYVAGPEILHSNSHSTGSPTWSSIIHAKNVLKDGFSWRAGSGSSSFWFSHWSPLGY 743

Query: 1099 LSALVPFVDIHDTQLSIKDI 1040
            L  LVP++DIHD QLS+KD+
Sbjct: 744  LGTLVPYIDIHDLQLSVKDL 763



 Score =  184 bits (468), Expect = 2e-43
 Identities = 87/154 (56%), Positives = 116/154 (75%)
 Frame = -1

Query: 3396 ITWRHLFSEAFVEVLCRHHSDHNPILVRCGGLPQNRGVRPFRFEAAWITHPEYQDVVKRA 3217
            + WR  F EAFVEVLCR HSDHNP+ +R GGLP  RG RPFRFEAAWI H +Y  +V+RA
Sbjct: 1    MNWRLAFPEAFVEVLCRFHSDHNPLFLRFGGLPITRGPRPFRFEAAWIDHKDYSTLVERA 60

Query: 3216 RSIENSDPVLALHRVKEESIIFNNEIFGSIWKRKNALERRLEGVQKALDRIDSARLVYLE 3037
             +  N + V AL+ VK +SI FN+E+FG+I++RK  +E RL+GVQ  L+R+DS   V LE
Sbjct: 61   WNSSNHNIVTALNTVKHDSINFNHEVFGNIFRRKRHIESRLKGVQSYLERVDSLSHVLLE 120

Query: 3036 HQLQKNYDTIPAQEELHWYQKSREKWIQLGDRNT 2935
             +LQ+ Y+ I  QEE+ W+QKSRE+W++LGD+N+
Sbjct: 121  KELQREYNHILFQEEMLWFQKSREQWVKLGDKNS 154



 Score =  102 bits (255), Expect(3) = 1e-39
 Identities = 56/124 (45%), Positives = 83/124 (66%), Gaps = 1/124 (0%)
 Frame = -1

Query: 369  QAGFGGILRTNEGKWIRGFSDNIGFSNS-LHAKLLGLYRGLSFTWDQGYCLVKCYSDSAL 193
            +AG+GGI+R + G ++ GFS  I  S+  L A+L  +Y+GL+   D     + CYSDS L
Sbjct: 932  RAGYGGIIRNDSGFYLSGFSGFIRESSDILLAELYAIYQGLTLAKDLVIDELVCYSDSLL 991

Query: 192  SIHLVT*PLNKWHFYAAIIKNVSELLSRN*NVVLVHTLREGNACADYLAKLGASGTSGWN 13
             I+L+  P+ K+H YA +I+++ EL+S++ NV L HT REGN CAD+LAKLGAS  +   
Sbjct: 992  CINLIKGPIVKYHVYAVLIQDIKELISQS-NVTLCHTFREGNQCADFLAKLGASSDADLI 1050

Query: 12   FYAT 1
             +A+
Sbjct: 1051 IHAS 1054



 Score = 78.6 bits (192), Expect(3) = 1e-39
 Identities = 46/148 (31%), Positives = 66/148 (44%), Gaps = 26/148 (17%)
 Frame = -3

Query: 925  TWKGSLDGVYTTKSGFKWIVDKRQQ---------VTDVRTILSWLWIWRLPVS------- 794
            TW   +      K GF W                +  + T++ ++ I  L +S       
Sbjct: 707  TWSSIIHAKNVLKDGFSWRAGSGSSSFWFSHWSPLGYLGTLVPYIDIHDLQLSVKDLKLP 766

Query: 793  EKIRFFFWTACHNTLP-FTVPN---------CQRCGCAIEDFLHCIRDCPVPRQIWFILG 644
             KI FFFW  CHN++P  ++ N         C RCG   E FLHC+RDC   R IW  +G
Sbjct: 767  SKIIFFFWLVCHNSVPTLSLLNHRKMSNSFICARCGLQEETFLHCVRDCDFSRNIWHHIG 826

Query: 643  FCDPAFYQVTNSIDWLLAGAKSTVPQIF 560
            F DP F+  T++ +WL  G+  +    F
Sbjct: 827  FNDPTFFSFTDAREWLKVGSTGSQAYTF 854



 Score = 35.4 bits (80), Expect(3) = 1e-39
 Identities = 22/69 (31%), Positives = 32/69 (46%)
 Frame = -2

Query: 566  NIFFLAQVSIPSYRL*LNINCLPKLMKPSNQNXXXXXXSERSVTWHPEKDCDVILNVDGS 387
            N+  L   S    RL  NI+ +  +   S  +        R + W+ +    VILNVDGS
Sbjct: 866  NLMCLNNESWSLNRLSFNIHSMVDIFTSSFSSNSDGTSVSRLIKWNNDNFSCVILNVDGS 925

Query: 386  CLATWVKLG 360
            CL + V+ G
Sbjct: 926  CLGSPVRAG 934