BLASTX nr result
ID: Astragalus22_contig00004187
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Astragalus22_contig00004187
(4403 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|KYP31853.1| Retrovirus-related Pol polyprotein from transposo... 2040 0.0
gb|KYP76811.1| Retrovirus-related Pol polyprotein from transposo... 1791 0.0
gb|KYP76810.1| Retrovirus-related Pol polyprotein from transposo... 1791 0.0
dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum] 1414 0.0
gb|PRQ60431.1| putative RNA-directed DNA polymerase [Rosa chinen... 1402 0.0
gb|PNX95528.1| putative gag/pol polyprotein [Trifolium pratense] 1371 0.0
gb|KYP66486.1| Retrovirus-related Pol polyprotein from transposo... 1360 0.0
gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas] 1337 0.0
emb|CAN75440.1| hypothetical protein VITISV_007304 [Vitis vinifera] 1278 0.0
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly... 1261 0.0
ref|XP_017609491.1| PREDICTED: retrovirus-related Pol polyprotei... 1175 0.0
ref|XP_013746494.2| uncharacterized protein BNAC09G10640D [Brass... 1172 0.0
ref|XP_022549646.1| uncharacterized protein LOC111201676, partia... 1172 0.0
gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris] 1167 0.0
gb|KYP40337.1| Retrovirus-related Pol polyprotein from transposo... 1135 0.0
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 1045 0.0
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 1036 0.0
gb|KYP60296.1| Retrovirus-related Pol polyprotein from transposo... 973 0.0
gb|KYP42630.1| Retrovirus-related Pol polyprotein from transposo... 782 0.0
gb|KYP63120.1| Retrovirus-related Pol polyprotein from transposo... 754 0.0
>gb|KYP31853.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1314
Score = 2040 bits (5286), Expect = 0.0
Identities = 1002/1320 (75%), Positives = 1111/1320 (84%), Gaps = 2/1320 (0%)
Frame = -2
Query: 4051 MFKLTADNYSYWKPMMEDHLYCKDLYEPITNEDMPEGKTEKEWEVLNRKAVAMIRKYIDK 3872
MFKLTADN+SYWKPMMEDHLYCKDLYEPIT + PEGKT+K+WE+LNRKAVA+IRKYID+
Sbjct: 1 MFKLTADNFSYWKPMMEDHLYCKDLYEPITQQSKPEGKTDKDWEILNRKAVAVIRKYIDR 60
Query: 3871 SLFEHVSTYTNAYELWTKLESMIQKKTPRNKAHLVRRLVKLEYSDGQNMIEHLNTFKGIV 3692
SLFEHVSTYTNAYELWTKLES+IQKKTPRNKAHL RRL KLEY DGQNMIEHLNTFKG+V
Sbjct: 61 SLFEHVSTYTNAYELWTKLESLIQKKTPRNKAHLYRRLAKLEYMDGQNMIEHLNTFKGLV 120
Query: 3691 NQLTKADMKIDDELQTXXXXXXLPESWDTLVVTLSNSTPGGKLSLDTITDSLLNEESRRK 3512
NQL KA++ IDDE+QT LPESWDTL++TLSNS P GKLSLD++TDSLLNEESRR+
Sbjct: 121 NQLKKAEINIDDEVQTLMLFSSLPESWDTLIITLSNSAPEGKLSLDSVTDSLLNEESRRR 180
Query: 3511 ERGMSSHSEANVVENXXXXXXXXXXXXXXXXXXXXXXXXGLTCFYCGKDGHKKPECRFLK 3332
ERG+++ EANV++N + C+YCGK GH+K ECRFLK
Sbjct: 181 ERGLNNQFEANVIDNRGRSKNREKGGRGKSQGRSKSRTR-ICCYYCGKPGHRKSECRFLK 239
Query: 3331 RDQKAGTVHPDVIDPKKKLEEKTTTAVASDDENVFLVSEVNYLNVVFDDCTWIVDTGASF 3152
+DQ+AGTVHPD IDP+KK E+ TTTAV SDD VFLV E NYLN+ FD+C WI+D+GASF
Sbjct: 240 KDQQAGTVHPDQIDPRKKKEDGTTTAVTSDD--VFLVGEENYLNIAFDECIWIIDSGASF 297
Query: 3151 HVTPHEGFFSSYQKGDFGKVKMGNHVTSKIVGIGEVILLTENGNKLVLKEVRHVPEMRLN 2972
HVTPHE FFSSYQKGDFG VKMGNHVTSKIVGIGE+ L+TENGNKL+LKEVRHVP+MRLN
Sbjct: 298 HVTPHEEFFSSYQKGDFGMVKMGNHVTSKIVGIGEIALMTENGNKLMLKEVRHVPDMRLN 357
Query: 2971 LISAGKLDDAGMNNQFGGGKWKLSRGSMVVARGRKEGSLYITHGKLCKGEINVAQEESKE 2792
LIS KLD+AGM NQF +WKLSRGSM+VARG+KEGSLY GK+CKG++NVAQ+ SKE
Sbjct: 358 LISVSKLDEAGMINQFSADRWKLSRGSMIVARGKKEGSLYTMQGKICKGDMNVAQDASKE 417
Query: 2791 LWHKRLGHMSEKGLEILAKDHLQSIKGQPLESCEDCLAGKQRRVSFQRSDNGRRRKHILD 2612
LWH+RLGHMSEKGLEILAKDHL +IKGQPLESCEDCLAGKQ RVSF+R D+ RRRKHILD
Sbjct: 418 LWHRRLGHMSEKGLEILAKDHLPNIKGQPLESCEDCLAGKQHRVSFRRPDDARRRKHILD 477
Query: 2611 LVHSDVCSTSERSLGGAQYFVTFIDDHSRKLWVYLLKRKDEVLRAFKEFHVSVERETGKK 2432
LVHSDVCSTSERS+GGAQYFVTFIDDHSRK+WVY LK KD+VL+AFKEFH VER TG+K
Sbjct: 478 LVHSDVCSTSERSIGGAQYFVTFIDDHSRKVWVYPLKTKDQVLQAFKEFHALVERATGRK 537
Query: 2431 LKCLRSDNGGEYRGPFEHYCKTHGIRHEKVPPKTPQMNGVAERFNRTIAEKVRSMLSHAK 2252
LKC+R+DNGGEY GPFE+YCKTHGIRHEKVPPKTPQMNGVAER NRTIAEKVRSMLSHAK
Sbjct: 538 LKCIRTDNGGEYLGPFEYYCKTHGIRHEKVPPKTPQMNGVAERMNRTIAEKVRSMLSHAK 597
Query: 2251 LPKSFWGEAVATAVDLINLSPSRPLNGKIPEEVWTGKKASYRNLRVFGCKASVHIPKDER 2072
+PKSFWGEAV TA DLINLSPSRPLNG+IPEEVW+GKKA Y +L+VFGC+A VHIPKDER
Sbjct: 598 IPKSFWGEAVLTAADLINLSPSRPLNGEIPEEVWSGKKAYYGHLKVFGCRAFVHIPKDER 657
Query: 2071 AKLDAKAKECVYLGSPRDELGFRLWDPANRKIVRSRDVVFFEDQTIQDIKKMEKPKLKVS 1892
KLDAK KEC+YL SP+DELGFRLWDP N+KIVRSRDV+FFEDQTIQDIKK EKPK K
Sbjct: 658 TKLDAKVKECIYLRSPKDELGFRLWDPVNKKIVRSRDVIFFEDQTIQDIKKPEKPKQKEV 717
Query: 1891 YDQSPLVVNKSGGETPQ--TEPDQDIQLXXXXXXXXXXXXXXXXXXXQSGEDVQHEPQVX 1718
D SP+V+N SGGE Q EP+Q Q + EP+V
Sbjct: 718 QDSSPIVINNSGGEISQRIDEPNQTEQ-------PESEQSQTMQEEQMETNQEEQEPEVR 770
Query: 1717 XXXXXXXXXXRYFSDEYINLTDEGEPQSFAEAIEMEEKDKWLQAMEEEIQSLKENQTYDL 1538
RYFSD+Y+NLTDEGEPQSF EAIEM +K+KWLQAMEEE+QSLKEN+TY+L
Sbjct: 771 RSMRVRQPSKRYFSDDYVNLTDEGEPQSFIEAIEMNDKEKWLQAMEEELQSLKENETYEL 830
Query: 1537 VELPKGRKALRNKWVFKLKNEENNPNPRYKARIVVKGCNQKKGIDFDEIFSPVVKMTSIR 1358
VELP+GRKAL+NKWVFKLK EENN PRYKARIVVKGCNQKKGIDF+EIFSPVVKMTSIR
Sbjct: 831 VELPQGRKALKNKWVFKLKTEENNTKPRYKARIVVKGCNQKKGIDFEEIFSPVVKMTSIR 890
Query: 1357 AILGLAAKLDLEIEQLDVKTAFLHGDLEEEIYMEQPEGFEEPGKEHLVCRLKKSLYGLKQ 1178
AILGLAAKLDLEIEQLDVKTAFLHGDLEEEIYMEQPEGF EPGKEHLVCRLKKSLYGLKQ
Sbjct: 891 AILGLAAKLDLEIEQLDVKTAFLHGDLEEEIYMEQPEGFAEPGKEHLVCRLKKSLYGLKQ 950
Query: 1177 APRQWYKKFDSFMTQHNFKKTSADHCVFVKNYENGESIILLLYVDDMLIVGKDXXXXXXX 998
APRQWYKKFD FM QHNFKKTSAD CVFVKNYENGESIILLLYVDDMLIVGKD
Sbjct: 951 APRQWYKKFDLFMAQHNFKKTSADQCVFVKNYENGESIILLLYVDDMLIVGKDKTKIAAL 1010
Query: 997 XXXXXXSFAMKDLGAVKRILGMKITRDRSKRMLWVSQEDYIEKVLKRFNMHNAKPARVPL 818
SFAMKDLG+VK+ILGMKI RDRSKRMLW+SQEDYI+KVL+RFNMHNAK VPL
Sbjct: 1011 KKALSKSFAMKDLGSVKKILGMKIIRDRSKRMLWMSQEDYIKKVLERFNMHNAKSVHVPL 1070
Query: 817 AGHFKLSKSQCPXXXXXXXXXXKVPYSSAVGSLMYAMVCTRPDIGYAVGIVSRFLSNPGK 638
GH KLSK QCP KVPYSSAVGSLMYAMVCTRPDI YAVG+VSRFLSNPGK
Sbjct: 1071 PGHLKLSKKQCP-VNEEKEEMSKVPYSSAVGSLMYAMVCTRPDIAYAVGVVSRFLSNPGK 1129
Query: 637 EHWEAVKWILRYLRGTAKRSLCFGNGDQMLIGYSDSDMAGDVDSRKSTSGYLITFAGGAV 458
EHW AVKWILRYL+GTAK LCFGNG+ ML GYSD+DMAGDVDSRKSTSGYLITFAGGA+
Sbjct: 1130 EHWNAVKWILRYLKGTAKSCLCFGNGNLMLTGYSDADMAGDVDSRKSTSGYLITFAGGAI 1189
Query: 457 SWQSKLQKCVTLSTAEAEYVAVTETSKEMLWMKNFLIELGHDQVDYVVNCDNQSTIHLAK 278
SWQS+LQKC+ LST EAE++A+TE KE+LWMK FL ELG DQ YV+ CD+QS IHL+K
Sbjct: 1190 SWQSRLQKCIALSTTEAEFIAITEGCKEILWMKKFLQELGQDQESYVLYCDSQSAIHLSK 1249
Query: 277 NPMFHSRSKHIDIRYHWIREALDEKRLKIEKIHTDLNWSDMMTKSLPTKKVEDCCQGAGV 98
N FHSRSKHID+RYHWIR+ L+ K LKIEKIHT N +DMMTKSLP +K+E C + AG+
Sbjct: 1250 NSTFHSRSKHIDVRYHWIRDVLESKMLKIEKIHTKDNGADMMTKSLPREKIEVCKEVAGL 1309
>gb|KYP76811.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1305
Score = 1791 bits (4639), Expect = 0.0
Identities = 882/1341 (65%), Positives = 1040/1341 (77%), Gaps = 8/1341 (0%)
Frame = -2
Query: 4081 MEGTFAHDGDMFKLTADNYSYWKPMMEDHLYCKDLYEPITNEDMPEGKTEKEWEVLNRKA 3902
ME AHDGDMFKLTA+NYSYWKPMMEDHLYCKDL+EPI ++ EGK++ +WE+LNRKA
Sbjct: 1 MEDNVAHDGDMFKLTANNYSYWKPMMEDHLYCKDLHEPIIYKEKVEGKSDAQWELLNRKA 60
Query: 3901 VAMIRKYIDKSLFEHVSTYTNAYELWTKLESMIQKKTPRNKAHLVRRLVKLEYSDGQNMI 3722
VAMIRKYIDKSLFEHVSTYTNAYELW KLESMIQKKTPRNKA+LVRRLVKLEY DG +MI
Sbjct: 61 VAMIRKYIDKSLFEHVSTYTNAYELWAKLESMIQKKTPRNKANLVRRLVKLEYKDGHSMI 120
Query: 3721 EHLNTFKGIVNQLTKADMKIDDELQTXXXXXXLPESWDTLVVTLSNSTPGGKLSLDTITD 3542
EHLN FKG+VNQLTK +MKIDDELQ LPESWDTLVVTLSNS P GKL++D ++D
Sbjct: 121 EHLNNFKGLVNQLTKIEMKIDDELQALLLLSSLPESWDTLVVTLSNSAPEGKLTMDAVSD 180
Query: 3541 SLLNEESRRKERGMSSHSEANVVENXXXXXXXXXXXXXXXXXXXXXXXXG--LTCFYCGK 3368
SLL EESRR ERG S H EAN++EN +TC+YCG+
Sbjct: 181 SLLGEESRRMERGESIHPEANIIENRGKNETRGRSKSRDQYQSRGRSKSRSKITCYYCGR 240
Query: 3367 DGHKKPECRFLKRDQKAGTVHPDVIDPKKKLEEKTTTAVASDDENVFLVSEVNYLNVVFD 3188
GH+K ECR KRDQKA ++ ++++ E N LN+ +D
Sbjct: 241 MGHRKMECRSFKRDQKA-------------------------EDMLYIIREGNILNIAYD 275
Query: 3187 DCTWIVDTGASFHVTPHEGFFSSYQKGDFGKVKMGNHVTSKIVGIGEVILLTENGNKLVL 3008
D +WIVD+GASFHVTPH FFSSYQ GDFG V+MGN SKIVGIG++IL T G +LVL
Sbjct: 276 DSSWIVDSGASFHVTPHGSFFSSYQSGDFGTVQMGNQDRSKIVGIGDIILTTSTGCRLVL 335
Query: 3007 KEVRHVPEMRLNLISAGKLDDAGMNNQFGGGKWKLSRGSMVVARGRKEGSLYITHGKLCK 2828
K+VRHVP MRLNLISAGKLDDAG+ N FG GKWKL++GS+V+ARG+KEGSLY+ KLCK
Sbjct: 336 KDVRHVPAMRLNLISAGKLDDAGLMNYFGEGKWKLTKGSLVMARGKKEGSLYVMQAKLCK 395
Query: 2827 GEINVAQEESKELWHKRLGHMSEKGLEILAKDHLQS-IKGQPLESCEDCLAGKQRRVSFQ 2651
GE+N+ ++ E+WHKRLGH+SEKGL ILA+ L S +KG+ L+ C CLAGKQ RV+FQ
Sbjct: 396 GEVNITTDDI-EVWHKRLGHISEKGLHILARKQLLSNVKGKSLDPCAHCLAGKQHRVAFQ 454
Query: 2650 RSDNGRRRKHILDLVHSDVCSTSERSLGGAQYFVTFIDDHSRKLWVYLLKRKDEVLRAFK 2471
RS RRK+ILDLVH+DVCS SE+S+GGA YFVTFIDDHSRK+W++LLK KD+VL AFK
Sbjct: 455 RSSPPVRRKNILDLVHTDVCSMSEKSIGGALYFVTFIDDHSRKVWLHLLKSKDQVLDAFK 514
Query: 2470 EFHVSVERETGKKLKCLRSDNGGEYRGPFEHYCKTHGIRHEKVPPKTPQMNGVAERFNRT 2291
EFH VERETG+K+KC+RSDNGGEYRGPFE YCK HGIR EK PPKTPQ+NG+AER NRT
Sbjct: 515 EFHALVERETGRKIKCVRSDNGGEYRGPFETYCKKHGIRLEKTPPKTPQLNGLAERMNRT 574
Query: 2290 IAEKVRSMLSHAKLPKSFWGEAVATAVDLINLSPSRPLNGKIPEEVWTGKKASYRNLRVF 2111
I E+VR +LSHAKLPK FWGEA+ VD++NL+PS PL G IP+EVWTGK+ASY +L+VF
Sbjct: 575 IEERVRCVLSHAKLPKLFWGEAIMAVVDIVNLTPSVPLGGAIPDEVWTGKRASYNHLKVF 634
Query: 2110 GCKASVHIPKDERAKLDAKAKECVYLGSPRDELGFRLWDPANRKIVRSRDVVFFEDQTIQ 1931
GC+A VHIPKDERAKLDAK KEC+YL SP+DE G+RLWDP N+K+VRSRDVVFFEDQTI+
Sbjct: 635 GCRAFVHIPKDERAKLDAKTKECIYLRSPKDEFGYRLWDPINKKVVRSRDVVFFEDQTIE 694
Query: 1930 DIKKMEKPKLKVSYDQSPLVVNKSGGETPQ-TEPDQDIQLXXXXXXXXXXXXXXXXXXXQ 1754
DIK EKP+L+ S + +P V ET Q +P++D
Sbjct: 695 DIKNSEKPRLRKSTELTP--VQHENNETHQDNDPEED--------EPVLEQSNQETHDEP 744
Query: 1753 SGEDVQHE----PQVXXXXXXXXXXXRYFSDEYINLTDEGEPQSFAEAIEMEEKDKWLQA 1586
+ ED Q P+ Y ++EY+ LTDEGEPQS+ EAI+ K++W +A
Sbjct: 745 AQEDPQSSSLPAPEPRRSSRERRPSTWYNTEEYVMLTDEGEPQSYKEAIKDIHKEEWRKA 804
Query: 1585 MEEEIQSLKENQTYDLVELPKGRKALRNKWVFKLKNEENNPNPRYKARIVVKGCNQKKGI 1406
M+EE+QSL EN TY+LVELPKGR+AL+NKWV+++K E+NN PRYKAR+VVKG Q+KGI
Sbjct: 805 MQEEMQSLHENHTYELVELPKGRRALKNKWVYRIKTEDNNTKPRYKARLVVKGFGQEKGI 864
Query: 1405 DFDEIFSPVVKMTSIRAILGLAAKLDLEIEQLDVKTAFLHGDLEEEIYMEQPEGFEEPGK 1226
DF+EIFSPVVKM+SIR ILG+AA DLEIEQLDVKTAFLHGDLEEEIYMEQPEGF+ PGK
Sbjct: 865 DFEEIFSPVVKMSSIRVILGIAATQDLEIEQLDVKTAFLHGDLEEEIYMEQPEGFKVPGK 924
Query: 1225 EHLVCRLKKSLYGLKQAPRQWYKKFDSFMTQHNFKKTSADHCVFVKNYENGESIILLLYV 1046
E+LVCRL KSLYGLKQAPRQWYKKF+SFM +H FKKT +DHCVF+K Y +G+ +ILLLYV
Sbjct: 925 ENLVCRLTKSLYGLKQAPRQWYKKFESFMAEHEFKKTESDHCVFIKRYASGDFLILLLYV 984
Query: 1045 DDMLIVGKDXXXXXXXXXXXXXSFAMKDLGAVKRILGMKITRDRSKRMLWVSQEDYIEKV 866
DDMLI G+D SFAMKDLG K+ILGM+ITRDRSKR+LW+SQE YIEKV
Sbjct: 985 DDMLIFGQDRIKIAALKKDLSKSFAMKDLGPAKQILGMRITRDRSKRLLWLSQERYIEKV 1044
Query: 865 LKRFNMHNAKPARVPLAGHFKLSKSQCPXXXXXXXXXXKVPYSSAVGSLMYAMVCTRPDI 686
L++FNM KP PLAGHF+LS Q P K+PYSS VGSLMYAM+CTRPDI
Sbjct: 1045 LEQFNMDKCKPVNTPLAGHFRLSSKQSPTSEREMEEMKKIPYSSVVGSLMYAMICTRPDI 1104
Query: 685 GYAVGIVSRFLSNPGKEHWEAVKWILRYLRGTAKRSLCFGNGDQMLIGYSDSDMAGDVDS 506
YAVG+VSRFL++PG EHW AVKWILRYLRGT+KR LCFG G +L GY+D+D+AGD+DS
Sbjct: 1105 AYAVGVVSRFLADPGNEHWLAVKWILRYLRGTSKRCLCFGKGKPVLQGYTDADLAGDIDS 1164
Query: 505 RKSTSGYLITFAGGAVSWQSKLQKCVTLSTAEAEYVAVTETSKEMLWMKNFLIELGHDQV 326
RKSTSGYL TFAGGAVSWQSKLQKCV LST EAEY+A TE KEMLWMKN L+ELG +Q
Sbjct: 1165 RKSTSGYLTTFAGGAVSWQSKLQKCVALSTTEAEYIAATEACKEMLWMKNMLLELGVEQE 1224
Query: 325 DYVVNCDNQSTIHLAKNPMFHSRSKHIDIRYHWIREALDEKRLKIEKIHTDLNWSDMMTK 146
YVV CDNQS I+LAKN FHSR+KHID RYHWIRE L+EK+L ++K+HTD NWSDMMTK
Sbjct: 1225 RYVVKCDNQSAIYLAKNSKFHSRTKHIDTRYHWIREVLEEKKLHLDKVHTDENWSDMMTK 1284
Query: 145 SLPTKKVEDCCQGAGVVVPPN 83
+PTKK EDCCQGAG+++PPN
Sbjct: 1285 VIPTKKFEDCCQGAGLLLPPN 1305
>gb|KYP76810.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1305
Score = 1791 bits (4639), Expect = 0.0
Identities = 882/1341 (65%), Positives = 1040/1341 (77%), Gaps = 8/1341 (0%)
Frame = -2
Query: 4081 MEGTFAHDGDMFKLTADNYSYWKPMMEDHLYCKDLYEPITNEDMPEGKTEKEWEVLNRKA 3902
ME AHDGDMFKLTA+NYSYWKPMMEDHLYCKDL+EPI ++ EGK++ +WE+LNRKA
Sbjct: 1 MEDNVAHDGDMFKLTANNYSYWKPMMEDHLYCKDLHEPIIYKEKVEGKSDAQWELLNRKA 60
Query: 3901 VAMIRKYIDKSLFEHVSTYTNAYELWTKLESMIQKKTPRNKAHLVRRLVKLEYSDGQNMI 3722
VAMIRKYIDKSLFEHVSTYTNAYELW KLESMIQKKTPRNKA+LVRRLVKLEY DG +MI
Sbjct: 61 VAMIRKYIDKSLFEHVSTYTNAYELWAKLESMIQKKTPRNKANLVRRLVKLEYKDGHSMI 120
Query: 3721 EHLNTFKGIVNQLTKADMKIDDELQTXXXXXXLPESWDTLVVTLSNSTPGGKLSLDTITD 3542
EHLN FKG+VNQLTK +MKIDDELQ LPESWDTLVVTLSNS P GKL++D ++D
Sbjct: 121 EHLNNFKGLVNQLTKIEMKIDDELQALLLLSSLPESWDTLVVTLSNSAPEGKLTMDAVSD 180
Query: 3541 SLLNEESRRKERGMSSHSEANVVENXXXXXXXXXXXXXXXXXXXXXXXXG--LTCFYCGK 3368
SLL EESRR ERG S H EAN++EN +TC+YCG+
Sbjct: 181 SLLGEESRRMERGESIHPEANIIENRGKNETRGRSKSRDQYQSRGRSKSRSKITCYYCGR 240
Query: 3367 DGHKKPECRFLKRDQKAGTVHPDVIDPKKKLEEKTTTAVASDDENVFLVSEVNYLNVVFD 3188
GH+K ECR KRDQKA ++ ++++ E N LN+ +D
Sbjct: 241 MGHRKMECRSFKRDQKA-------------------------EDMLYIIREGNILNIAYD 275
Query: 3187 DCTWIVDTGASFHVTPHEGFFSSYQKGDFGKVKMGNHVTSKIVGIGEVILLTENGNKLVL 3008
D +WIVD+GASFHVTPH FFSSYQ GDFG V+MGN SKIVGIG++IL T G +LVL
Sbjct: 276 DSSWIVDSGASFHVTPHGSFFSSYQSGDFGTVQMGNQDRSKIVGIGDIILTTSTGCRLVL 335
Query: 3007 KEVRHVPEMRLNLISAGKLDDAGMNNQFGGGKWKLSRGSMVVARGRKEGSLYITHGKLCK 2828
K+VRHVP MRLNLISAGKLDDAG+ N FG GKWKL++GS+V+ARG+KEGSLY+ KLCK
Sbjct: 336 KDVRHVPAMRLNLISAGKLDDAGLMNYFGEGKWKLTKGSLVMARGKKEGSLYVMQAKLCK 395
Query: 2827 GEINVAQEESKELWHKRLGHMSEKGLEILAKDHLQS-IKGQPLESCEDCLAGKQRRVSFQ 2651
GE+N+ ++ E+WHKRLGH+SEKGL ILA+ L S +KG+ L+ C CLAGKQ RV+FQ
Sbjct: 396 GEVNITTDDL-EVWHKRLGHISEKGLHILARKQLLSNVKGKSLDPCAHCLAGKQHRVAFQ 454
Query: 2650 RSDNGRRRKHILDLVHSDVCSTSERSLGGAQYFVTFIDDHSRKLWVYLLKRKDEVLRAFK 2471
RS RRK+ILDLVH+DVCS SE+S+GGA YFVTFIDDHSRK+W++LLK KD+VL AFK
Sbjct: 455 RSSPPVRRKNILDLVHTDVCSMSEKSIGGALYFVTFIDDHSRKVWLHLLKSKDQVLDAFK 514
Query: 2470 EFHVSVERETGKKLKCLRSDNGGEYRGPFEHYCKTHGIRHEKVPPKTPQMNGVAERFNRT 2291
EFH VERETG+K+KC+RSDNGGEYRGPFE YCK HGIR EK PPKTPQ+NG+AER NRT
Sbjct: 515 EFHALVERETGRKIKCVRSDNGGEYRGPFETYCKKHGIRLEKTPPKTPQLNGLAERMNRT 574
Query: 2290 IAEKVRSMLSHAKLPKSFWGEAVATAVDLINLSPSRPLNGKIPEEVWTGKKASYRNLRVF 2111
I E+VR +LSHAKLPK FWGEA+ VD++NL+PS PL G IP+EVWTGK+ASY +L+VF
Sbjct: 575 IEERVRCVLSHAKLPKLFWGEAIMAVVDIVNLTPSVPLGGAIPDEVWTGKRASYNHLKVF 634
Query: 2110 GCKASVHIPKDERAKLDAKAKECVYLGSPRDELGFRLWDPANRKIVRSRDVVFFEDQTIQ 1931
GC+A VHIPKDERAKLDAK KEC+YL SP+DE G+RLWDP N+K+VRSRDVVFFEDQTI+
Sbjct: 635 GCRAFVHIPKDERAKLDAKTKECIYLRSPKDEFGYRLWDPINKKVVRSRDVVFFEDQTIE 694
Query: 1930 DIKKMEKPKLKVSYDQSPLVVNKSGGETPQ-TEPDQDIQLXXXXXXXXXXXXXXXXXXXQ 1754
DIK EKP+L+ S + +P V ET Q +P++D
Sbjct: 695 DIKNSEKPRLRKSTELTP--VQHENNETHQDNDPEED--------EPVLEQSNQETHDEP 744
Query: 1753 SGEDVQHE----PQVXXXXXXXXXXXRYFSDEYINLTDEGEPQSFAEAIEMEEKDKWLQA 1586
+ ED Q P+ Y ++EY+ LTDEGEPQS+ EAI+ K++W +A
Sbjct: 745 AQEDPQSSSLPAPEPRRSSRERRPSTWYNTEEYVMLTDEGEPQSYKEAIKDIHKEEWRKA 804
Query: 1585 MEEEIQSLKENQTYDLVELPKGRKALRNKWVFKLKNEENNPNPRYKARIVVKGCNQKKGI 1406
M+EE+QSL EN TY+LVELPKGR+AL+NKWV+++K E+NN PRYKAR+VVKG Q+KGI
Sbjct: 805 MQEEMQSLHENHTYELVELPKGRRALKNKWVYRIKTEDNNTKPRYKARLVVKGFGQEKGI 864
Query: 1405 DFDEIFSPVVKMTSIRAILGLAAKLDLEIEQLDVKTAFLHGDLEEEIYMEQPEGFEEPGK 1226
DF+EIFSPVVKM+SIR ILG+AA DLEIEQLDVKTAFLHGDLEEEIYMEQPEGF+ PGK
Sbjct: 865 DFEEIFSPVVKMSSIRVILGIAATQDLEIEQLDVKTAFLHGDLEEEIYMEQPEGFKVPGK 924
Query: 1225 EHLVCRLKKSLYGLKQAPRQWYKKFDSFMTQHNFKKTSADHCVFVKNYENGESIILLLYV 1046
E+LVCRL KSLYGLKQAPRQWYKKF+SFM +H FKKT +DHCVF+K Y +G+ +ILLLYV
Sbjct: 925 ENLVCRLTKSLYGLKQAPRQWYKKFESFMAEHEFKKTESDHCVFIKRYASGDFLILLLYV 984
Query: 1045 DDMLIVGKDXXXXXXXXXXXXXSFAMKDLGAVKRILGMKITRDRSKRMLWVSQEDYIEKV 866
DDMLI G+D SFAMKDLG K+ILGM+ITRDRSKR+LW+SQE YIEKV
Sbjct: 985 DDMLIFGQDRIKIAALKKDLSKSFAMKDLGPAKQILGMRITRDRSKRLLWLSQERYIEKV 1044
Query: 865 LKRFNMHNAKPARVPLAGHFKLSKSQCPXXXXXXXXXXKVPYSSAVGSLMYAMVCTRPDI 686
L++FNM KP PLAGHF+LS Q P K+PYSS VGSLMYAM+CTRPDI
Sbjct: 1045 LEQFNMDKCKPVNTPLAGHFRLSSKQSPTSEREMEEMKKIPYSSVVGSLMYAMICTRPDI 1104
Query: 685 GYAVGIVSRFLSNPGKEHWEAVKWILRYLRGTAKRSLCFGNGDQMLIGYSDSDMAGDVDS 506
YAVG+VSRFL++PG EHW AVKWILRYLRGT+KR LCFG G +L GY+D+D+AGD+DS
Sbjct: 1105 AYAVGVVSRFLADPGNEHWLAVKWILRYLRGTSKRCLCFGKGKPVLQGYTDADLAGDIDS 1164
Query: 505 RKSTSGYLITFAGGAVSWQSKLQKCVTLSTAEAEYVAVTETSKEMLWMKNFLIELGHDQV 326
RKSTSGYL TFAGGAVSWQSKLQKCV LST EAEY+A TE KEMLWMKN L+ELG +Q
Sbjct: 1165 RKSTSGYLTTFAGGAVSWQSKLQKCVALSTTEAEYIAATEACKEMLWMKNMLLELGVEQE 1224
Query: 325 DYVVNCDNQSTIHLAKNPMFHSRSKHIDIRYHWIREALDEKRLKIEKIHTDLNWSDMMTK 146
YVV CDNQS I+LAKN FHSR+KHID RYHWIRE L+EK+L ++K+HTD NWSDMMTK
Sbjct: 1225 RYVVKCDNQSAIYLAKNSKFHSRTKHIDTRYHWIREVLEEKKLHLDKVHTDENWSDMMTK 1284
Query: 145 SLPTKKVEDCCQGAGVVVPPN 83
+PTKK EDCCQGAG+++PPN
Sbjct: 1285 VIPTKKFEDCCQGAGLLLPPN 1305
>dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]
Length = 1338
Score = 1414 bits (3660), Expect = 0.0
Identities = 707/1341 (52%), Positives = 922/1341 (68%), Gaps = 14/1341 (1%)
Frame = -2
Query: 4066 AHDGDMFKLTADNYSYWKPMMEDHLYCKDLYEPITNEDMPEGKTEKEWEVLNRKAVAMIR 3887
A M L NY W+ M+D L+ ++ P+ + PE K++++WE + + IR
Sbjct: 3 ARTSKMVNLNGTNYHLWRNKMKDLLFVTKMHLPVFSSQKPEDKSDEDWEFEHNQVCGYIR 62
Query: 3886 KYIDKSLFEHVSTYTNAYELWTKLESMIQKKTPRNKAHLVRRLVKLEYSDGQNMIEHLNT 3707
++++ +++ H+S T+A LW KLE + KT NK + +L++++Y +G + +HLN
Sbjct: 63 QFVEDNVYNHISGVTHARSLWDKLEELYASKTGNNKLFYLTKLMQVKYVEGTTVADHLNE 122
Query: 3706 FKGIVNQLTKADMKIDDELQTXXXXXXLPESWDTLVVTLSNSTPGGKLSLDTITDSLLNE 3527
+GIV+QL+ +K DDE+ LPESW+TL V+++NS P G ++++T+ +LNE
Sbjct: 123 IQGIVDQLSGMGIKFDDEVLALMVLATLPESWETLKVSITNSAPNGVVNMETVKSGILNE 182
Query: 3526 ESRRKERGMSSHSEANVVENXXXXXXXXXXXXXXXXXXXXXXXXGLTCFYCGKDGHKKPE 3347
E RR+ +G SS + + C YC K GH K
Sbjct: 183 EMRRRSQGTSSSQSEVLAVTTRGRSQNKSQSNRDKSRGKSNKFANVECHYCKKKGHIKRF 242
Query: 3346 CRFLKRDQKAGTVHPDVIDPKKKLEEKTTTAVASDDE-NVF----LVSEVNYLNVVFDDC 3182
CR + DQK K +K +SDDE N F +V + + +N+ +
Sbjct: 243 CRQFQNDQK------------KNKGKKVKPEESSDDETNSFGEFNVVYDDDIINLTTQEM 290
Query: 3181 TWIVDTGASFHVTPHEGFFSSYQKGDFGKVKMGNHVTSKIVGIGEVILLTENGNKLVLKE 3002
TW++D+GA+ H TP FSSY GDFG+VKMGN S +VG G+V L T NG KL+L++
Sbjct: 291 TWVIDSGATIHATPRRELFSSYTLGDFGRVKMGNANFSTVVGKGDVCLETMNGMKLLLRD 350
Query: 3001 VRHVPEMRLNLISAGKLDDAGMNNQFGGGKWKLSRGSMVVARGRKEGSLYITHGKLCKGE 2822
VRHVP+MRLNLIS KLD+ G N F G+WKL++GS++VARG K+ LY+T + +
Sbjct: 351 VRHVPDMRLNLISVDKLDEEGYCNTFHNGQWKLTKGSLMVARGTKQSKLYVTQASISQQV 410
Query: 2821 INVAQEESK-ELWHKRLGHMSEKGL-EILAKDHLQSIKGQPLESCEDCLAGKQRRVSFQR 2648
INVA+ +S +LWH+RLGHMSEK + ++ K+ L + L+ C DCLAGKQ RVSF+R
Sbjct: 411 INVAENDSNIKLWHRRLGHMSEKSMARLVKKNALPGLNQIQLKKCADCLAGKQNRVSFKR 470
Query: 2647 SDNGRRRKHILDLVHSDVCSTSERSLGGAQYFVTFIDDHSRKLWVYLLKRKDEVLRAFKE 2468
RR+ ++LDLVHSDVC ++SLGGA+YFVTFIDDHSRK WVY LK KD+V + FK+
Sbjct: 471 FPPSRRQ-NVLDLVHSDVCGPFKKSLGGARYFVTFIDDHSRKTWVYTLKTKDQVFQVFKQ 529
Query: 2467 FHVSVERETGKKLKCLRSDNGGEYRGPFEHYCKTHGIRHEKVPPKTPQMNGVAERFNRTI 2288
F VERETGKKLKC+R+DNGGEY+G F+ YCK HGIRH+ PPKTPQ+NG+AER NRT+
Sbjct: 530 FLTLVERETGKKLKCIRTDNGGEYQGQFDAYCKEHGIRHQFTPPKTPQLNGLAERMNRTL 589
Query: 2287 AEKVRSMLSHAKLPKSFWGEAVATAVDLINLSPSRPLNGKIPEEVWTGKKASYRNLRVFG 2108
E+ R +LSH+KLPK+FWGEA+ TA ++N SP PL K PE++W G+ SY LRVFG
Sbjct: 590 IERTRCLLSHSKLPKAFWGEALVTAAYVLNHSPCVPLQYKAPEKIWLGRDISYDQLRVFG 649
Query: 2107 CKASVHIPKDERAKLDAKAKECVYLGSPRDELGFRLWDPANRKIVRSRDVVFFEDQTIQD 1928
CKA VH+PKDER+KLD K +ECV++G +D LG++ +DP +K+VRSRDVVF EDQTI+D
Sbjct: 650 CKAYVHVPKDERSKLDVKTRECVFIGYGQDMLGYKFYDPVEKKLVRSRDVVFVEDQTIED 709
Query: 1927 IKKMEK-PKLKVSYDQSPLVVNKSGGETPQTEPDQDIQLXXXXXXXXXXXXXXXXXXXQS 1751
I K+EK ++ P VV + G+ Q + L
Sbjct: 710 IDKVEKSTDDSAEFELPPTVVPRQVGDDVQDNQPEAPGLPNEDELADTEGNEDNGDDDAD 769
Query: 1750 GED------VQHEPQVXXXXXXXXXXXRYFSDEYINLTDEGEPQSFAEAIEMEEKDKWLQ 1589
ED + + P RY EY+ LTD GEP SF EAI+ E K+KW++
Sbjct: 770 EEDQPQPPILNNPPYHTRSGRVVQQSTRYSPHEYVLLTDGGEPDSFEEAIDDEHKEKWIE 829
Query: 1588 AMEEEIQSLKENQTYDLVELPKGRKALRNKWVFKLKNEENNPNPRYKARIVVKGCNQKKG 1409
AM++EI+SL EN+T++LV+LPKG++AL+NKWVFK+K++E+N PR+KAR+VVKG NQ+KG
Sbjct: 830 AMQDEIKSLHENKTFELVKLPKGKRALKNKWVFKMKHDEHNSLPRFKARLVVKGFNQRKG 889
Query: 1408 IDFDEIFSPVVKMTSIRAILGLAAKLDLEIEQLDVKTAFLHGDLEEEIYMEQPEGFEEPG 1229
IDFDEIFSPVVKMTSIR +LGLAA L+LE+EQ+DVKTAFLHGDLEEEIYMEQP+GF++ G
Sbjct: 890 IDFDEIFSPVVKMTSIRTVLGLAASLNLEVEQMDVKTAFLHGDLEEEIYMEQPDGFQQKG 949
Query: 1228 KEHLVCRLKKSLYGLKQAPRQWYKKFDSFMTQHNFKKTSADHCVFVKNYENGESIILLLY 1049
KE VCRL+KSLYGLKQAPRQWYKKF+S M QH +KKT++DHCVF + + + + IILLLY
Sbjct: 950 KEDYVCRLRKSLYGLKQAPRQWYKKFESVMGQHGYKKTTSDHCVFAQKFSDDDFIILLLY 1009
Query: 1048 VDDMLIVGKDXXXXXXXXXXXXXSFAMKDLGAVKRILGMKITRDRSKRMLWVSQEDYIEK 869
VDDMLIVG++ FAMKDLG K+ILGM+I RDR + LW+SQE YIEK
Sbjct: 1010 VDDMLIVGRNVSRINSLKEQLSKFFAMKDLGPAKQILGMRIMRDREAKKLWLSQEKYIEK 1069
Query: 868 VLKRFNMHNAKPARVPLAGHFKLSKSQCPXXXXXXXXXXKVPYSSAVGSLMYAMVCTRPD 689
VL+RFNM K PLA HF+LS Q P ++PY+SAVGSLMYAMVCTRPD
Sbjct: 1070 VLQRFNMEKTKAVSCPLANHFRLSTKQSPSTDDERRKMERIPYASAVGSLMYAMVCTRPD 1129
Query: 688 IGYAVGIVSRFLSNPGKEHWEAVKWILRYLRGTAKRSLCFGNGDQMLIGYSDSDMAGDVD 509
I +AVG+VSRFLSNPGKEHW+AVKWILRYLRGT+K LCFG + +L+GY+D+DMAGDVD
Sbjct: 1130 IAHAVGVVSRFLSNPGKEHWDAVKWILRYLRGTSKLCLCFGEDNPVLVGYTDADMAGDVD 1189
Query: 508 SRKSTSGYLITFAGGAVSWQSKLQKCVTLSTAEAEYVAVTETSKEMLWMKNFLIELGHDQ 329
SRKSTSGYLI F+GGAVSWQSKLQKCV LST EAE++A TE KE++WMK FL ELG Q
Sbjct: 1190 SRKSTSGYLINFSGGAVSWQSKLQKCVALSTTEAEFIAATEACKELIWMKKFLTELGFSQ 1249
Query: 328 VDYVVNCDNQSTIHLAKNPMFHSRSKHIDIRYHWIREALDEKRLKIEKIHTDLNWSDMMT 149
Y + CD+QS IHLAKN FHSRSKHID+RY+WIR+ L++K L++EKIHTD N SDM+T
Sbjct: 1250 DGYQLFCDSQSAIHLAKNASFHSRSKHIDVRYNWIRDVLEKKMLRLEKIHTDENGSDMLT 1309
Query: 148 KSLPTKKVEDCCQGAGVVVPP 86
K+LP K E C + AG+V PP
Sbjct: 1310 KTLPKGKFEFCREAAGIVDPP 1330
>gb|PRQ60431.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 1340
Score = 1402 bits (3629), Expect = 0.0
Identities = 728/1344 (54%), Positives = 919/1344 (68%), Gaps = 23/1344 (1%)
Frame = -2
Query: 4051 MFKLTADNYSYWKPMMEDHLYCKDLYEPITNEDM-PEGKTEKEWEVLNRKAVAMIRKYID 3875
M +L N+ WKP MED LYCKDL+EPI E PEG + W +NRKA+ IR+++D
Sbjct: 8 MIRLNHSNWITWKPRMEDILYCKDLHEPIVGEAAKPEGTSVPTWTKMNRKAIGYIREWVD 67
Query: 3874 KSLFEHVSTYTNAYELWTKLESMIQKKTPRNKAHLVRRLVKLEYSDGQNMIEHLNTFKGI 3695
S+F HVS TNA ELW KL S+ +KKT KA L++ LV ++Y DG + EHLN F+
Sbjct: 68 DSVFHHVSNETNARELWLKLTSLFEKKTAAKKAFLIKELVNMKYKDGVRVTEHLNNFQST 127
Query: 3694 VNQLTKADMKIDDELQTXXXXXXLPESWDTLVVTLSNSTPGGKLSLDTITDSLLNEESRR 3515
+NQL DMKIDDELQ LP++W+T VVT+SNS P G LS+D + +++LNEE+RR
Sbjct: 128 INQLATMDMKIDDELQALLLLGSLPDNWETFVVTVSNSAPDGVLSMDNVKNNMLNEETRR 187
Query: 3514 KERGMSSHSEANVVENXXXXXXXXXXXXXXXXXXXXXXXXGLTCFYCGKDGHKKPECRFL 3335
K S +S+ V E+ G C +CG GH K C L
Sbjct: 188 KSSS-SDNSQVFVTEHRGRSKSRGPKGHGRSMSRSRTRFNG-KCHHCGIFGHMKKNCNKL 245
Query: 3334 KRDQKAGTVHPDVIDPKKKLEEKTTTAVASDDENVFLVSEVNYLNVVFDDCT---WIVDT 3164
K+D K G D + + + T A S DE FL E L+V DDC+ W+VD+
Sbjct: 246 KKDPKEGR---DGNTHQPNDDTRNTAASVSHDECEFLCLEGECLHV--DDCSSVAWVVDS 300
Query: 3163 GASFHVTPHEGFFSSYQKGDFGKVKMGNHVTSKIVGIGEVILLTENGNKLVLKEVRHVPE 2984
GASFH TPH +F++YQ GDFG+VKMGN SKI GIG++ T+ GNKL+LK+VR+VP
Sbjct: 301 GASFHATPHLEYFTTYQGGDFGRVKMGNDGYSKISGIGDICFETDLGNKLMLKDVRYVPG 360
Query: 2983 MRLNLISAGKLDDAGMNNQFGGGKWKLSRGSMVVARGRKEGSLYITHGKLCKGEINVAQE 2804
+RLNL+S G LD G ++ G KW+L++GS+V+ARG+ +LY T+GK+CKGE+NVA +
Sbjct: 361 LRLNLMSTGVLDRQGFHHHGGDQKWRLTKGSLVIARGKMCCTLYKTYGKICKGELNVADD 420
Query: 2803 ESKELWHKRLGHMSEKGLEILAKDHLQSI-KGQPLESCEDCLAGKQRRVSFQRSDNGRRR 2627
S LWHKRLGHMSEKGL++LAK L KG L+SC+ CL GKQ +VSF R+ R+
Sbjct: 421 SSPSLWHKRLGHMSEKGLQVLAKKSLIPFAKGTSLDSCDYCLFGKQHKVSFTRTFT--RK 478
Query: 2626 KHILDLVHSDVCSTSE-RSLGGAQYFVTFIDDHSRKLWVYLLKRKDEVLRAFKEFHVSVE 2450
+++LDLVHSDVC E S+G +YFVT+IDD SRK+WVYLLK KD+V + FKEFH VE
Sbjct: 479 ENVLDLVHSDVCGPMEVESVGHNKYFVTYIDDASRKVWVYLLKTKDQVFQTFKEFHAMVE 538
Query: 2449 RETGKKLKCLRSDNGGEYRG-PFEHYCKTHGIRHEKVPPKTPQMNGVAERFNRTIAEKVR 2273
RETG+ LKC+RSDNGGEY F YC HGI+H K P TPQ NGVAER NRTI EKVR
Sbjct: 539 RETGRTLKCIRSDNGGEYTSNEFRDYCSKHGIKHVKTIPGTPQHNGVAERMNRTILEKVR 598
Query: 2272 SMLSHAKLPKSFWGEAVATAVDLINLSPSRPLNGKIPEEVWTGKKASYRNLRVFGCKASV 2093
SML A L K FWGEA+ TA LIN +P PL + PE VWTG+ ASY +LRVFGCKA
Sbjct: 599 SMLKTANLTKKFWGEAMTTACYLINRTPCVPLGLETPEGVWTGRSASYSHLRVFGCKAFA 658
Query: 2092 HIPKDERAKLDAKAKECVYLGSPRDELGFRLWDPANRKIVRSRDVVFFEDQTIQDIKKME 1913
H+PK++R+KLD KA C++LG +E+G+RLW+P +K+ RSRDVVF E QTI D K E
Sbjct: 659 HVPKEQRSKLDDKAMPCIFLGYGNEEMGYRLWNPKTKKLFRSRDVVFHEGQTIADFDKNE 718
Query: 1912 KPKL-KVSYDQSPLVVNKSGGETPQTEPDQDIQLXXXXXXXXXXXXXXXXXXXQSGEDVQ 1736
+++YD SPL + + Q ++D+ GE ++
Sbjct: 719 VEHADQLTYDSSPL--QEEPSDKAQDMVNEDV--PDMAEAEAAEPEDNDQGEPNQGEQLE 774
Query: 1735 H-EPQVXXXXXXXXXXXRYFSDE--------------YINLTDEGEPQSFAEAIEMEEKD 1601
+ + V +Y S + YI LT++GEP+ F EA + D
Sbjct: 775 NAQVPVRRSNREPKPNTKYHSSQYILVTSDGDDPYSRYILLTNDGEPECFEEAKTHADCD 834
Query: 1600 KWLQAMEEEIQSLKENQTYDLVELPKGRKALRNKWVFKLKNEENNPNPRYKARIVVKGCN 1421
KW+ AM+ E++SL +N TY+LVELPKGRKAL+NKWVFKLK +EN ++KAR+VVKG
Sbjct: 835 KWMLAMKSEMESLLKNDTYELVELPKGRKALKNKWVFKLKRDENEQLTKFKARLVVKGFG 894
Query: 1420 QKKGIDFDEIFSPVVKMTSIRAILGLAAKLDLEIEQLDVKTAFLHGDLEEEIYMEQPEGF 1241
QK+GIDFDEIFSPVVKMTSIR ILG+AA +DLE+EQLDVKTAFLHGDLEEEIYMEQPEGF
Sbjct: 895 QKEGIDFDEIFSPVVKMTSIRIILGMAASMDLEVEQLDVKTAFLHGDLEEEIYMEQPEGF 954
Query: 1240 EEPGKEHLVCRLKKSLYGLKQAPRQWYKKFDSFMTQHNFKKTSADHCVFVKNYENGESII 1061
E GK+H+VC+LKKSLYGLKQAPRQWYKKFDSFM H +K+T AD CV+++ + G II
Sbjct: 955 EVEGKQHMVCKLKKSLYGLKQAPRQWYKKFDSFMVGHGYKRTDADPCVYLQRFTGGNFII 1014
Query: 1060 LLLYVDDMLIVGKDXXXXXXXXXXXXXSFAMKDLGAVKRILGMKITRDRSKRMLWVSQED 881
LLLYVDDMLIVGKD SF MKDLG K+ILGM+ITRDR + LW+SQE
Sbjct: 1015 LLLYVDDMLIVGKDVSMIHKLKADLSKSFDMKDLGPAKQILGMEITRDRQAKKLWLSQER 1074
Query: 880 YIEKVLKRFNMHNAKPARVPLAGHFKLSKSQCPXXXXXXXXXXKVPYSSAVGSLMYAMVC 701
Y+E+VL+RFNM AK PL HFKLS+ CP +PYSSAVGSLMYAMVC
Sbjct: 1075 YVERVLERFNMKEAKSVSSPLGNHFKLSRLSCPTTQVEKDKMAGIPYSSAVGSLMYAMVC 1134
Query: 700 TRPDIGYAVGIVSRFLSNPGKEHWEAVKWILRYLRGTAKRSLCFGNGDQMLIGYSDSDMA 521
TRPDI +AVG+VSR+LSNPG+EHWEAVKWIL+YLRGT+K LCFG + +L G++D+D+A
Sbjct: 1135 TRPDIAHAVGVVSRYLSNPGREHWEAVKWILKYLRGTSKLCLCFGGSEPILEGFTDADLA 1194
Query: 520 GDVDSRKSTSGYLITFAGGAVSWQSKLQKCVTLSTAEAEYVAVTETSKEMLWMKNFLIEL 341
GD+D+RKSTS YL TF+GGAVSWQSKLQKCV LST E+EY+A E KEM+W++ F+ EL
Sbjct: 1195 GDLDNRKSTSAYLFTFSGGAVSWQSKLQKCVALSTTESEYLAANEAGKEMIWLQRFVQEL 1254
Query: 340 GHDQVDYVVNCDNQSTIHLAKNPMFHSRSKHIDIRYHWIREALDEKRLKIEKIHTDLNWS 161
G Q +YVV+CD+QS IHL+KN M+H R+KHID RYHWIR+A+ +K ++ KIHT+ N S
Sbjct: 1255 GVKQGNYVVHCDSQSAIHLSKNSMYHPRTKHIDHRYHWIRDAVSKKFFQLRKIHTNKNIS 1314
Query: 160 DMMTKSLPTKKVEDCCQGAGVVVP 89
DM+TK + +K E C +G+ P
Sbjct: 1315 DMLTKVVQQQKFEFCRSASGLTHP 1338
>gb|PNX95528.1| putative gag/pol polyprotein [Trifolium pratense]
Length = 1339
Score = 1371 bits (3549), Expect = 0.0
Identities = 694/1339 (51%), Positives = 902/1339 (67%), Gaps = 16/1339 (1%)
Frame = -2
Query: 4051 MFKLTADNYSYWKPMMEDHLYCKDLYEPITNEDMPEGKTEKEWEVLNRKAVAMIRKYIDK 3872
M L NY+ WK MED LY K + P+ + + P+GK+ +EW +L+R+ IR+++D
Sbjct: 8 MVSLNGSNYNVWKGKMEDLLYVKGFHLPVFSNEKPDGKSGEEWNLLHRQVCGYIRQWVDD 67
Query: 3871 SLFEHVSTYTNAYELWTKLESMIQKKTPRNKAHLVRRLVKLEYSDGQNMIEHLNTFKGIV 3692
+ HVS+ T+A LWTKLE + +KT NK L ++L+ L YSDG M +HLNTF+GI+
Sbjct: 68 DVLNHVSSVTHARSLWTKLEELYARKTGNNKLFLFKQLMSLRYSDGSPMTDHLNTFQGIL 127
Query: 3691 NQLTKADMKIDDELQTXXXXXXLPESWDTLVVTLSNSTPGGKLSLDTITDSLLNEESRRK 3512
NQL++ + DDE+Q LP SW+T +LSNS P G +S+D S+LNEE RRK
Sbjct: 128 NQLSEMKLIFDDEIQGLWLLGTLPNSWETFRTSLSNSAPNGIISMDLAKSSVLNEELRRK 187
Query: 3511 ERGMSSHSEANVVEN---XXXXXXXXXXXXXXXXXXXXXXXXGLTCFYCGKDGHKKPECR 3341
+G SSHSE V E+ + C +CG+ G K CR
Sbjct: 188 SQGSSSHSEVLVTESRGRQQSRGPSNRGTSRDKSQGGSNRFSNIECHHCGEKGDIKRFCR 247
Query: 3340 FLKRDQKAGTVHPDVIDPKKKLEEKTTTAVASDDENVFLVSE--VNYLNVVFDDCTWIVD 3167
LKR+ K + + KK+ A+ D F+V + V +N+ D+ W+VD
Sbjct: 248 KLKRENKKKGYNN---NNKKEGNNNEDVAIVDD---FFIVCDNCVENINLSCDEMDWVVD 301
Query: 3166 TGASFHVTPHEGFFSSYQKGDFGKVKMGNHVTSKIVGIGEVILLTENGNKLVLKEVRHVP 2987
+GAS H T FS+Y+ GDFG V+MGN+ + ++GIG++ + T N LVLK V+H+P
Sbjct: 302 SGASTHATSRRDLFSTYETGDFGVVRMGNNGQANVIGIGDICVETSNETTLVLKGVKHIP 361
Query: 2986 EMRLNLISAGKLDDAGMNNQFGGGKWKLSRGSMVVARGRKEGSLYITHGKLCKGEINVA- 2810
E+R NL+S G+LD+ G +N F +WKL +GSMVVA+G+K +LY+ + K IN
Sbjct: 362 ELRFNLLSVGELDNEGYDNSFSENEWKLKKGSMVVAKGKKNSNLYVVQLGVSKCYINTCD 421
Query: 2809 QEESKELWHKRLGHMSEKGLEILAKDH-LQSIKGQPLESCEDCLAGKQRRVSFQRSDNGR 2633
+ S ELWHKRLGHMSEKGL ILAK + L + L C CLAGKQRRVSF +S +
Sbjct: 422 NDSSSELWHKRLGHMSEKGLSILAKKNVLHGVSDAKLRKCSHCLAGKQRRVSF-KSSEPK 480
Query: 2632 RRKHILDLVHSDVCSTSE-RSLGGAQYFVTFIDDHSRKLWVYLLKRKDEVLRAFKEFHVS 2456
R+ +LDLVHSDVC + RSLGGA YFVTFIDD+SRK W Y LK KD+VL FK F S
Sbjct: 481 RKSEVLDLVHSDVCGPMKTRSLGGAYYFVTFIDDYSRKTWAYTLKTKDQVLDTFKSFQAS 540
Query: 2455 VERETGKKLKCLRSDNGGEYRGPFEHYCKTHGIRHEKVPPKTPQMNGVAERFNRTIAEKV 2276
VERETGKKLKC+R++NGGEY GPF+ YC+ GIRH+K PPKTPQ+NG+AER NRT+ E++
Sbjct: 541 VERETGKKLKCIRTNNGGEYVGPFDKYCQDQGIRHQKSPPKTPQLNGLAERMNRTLVERM 600
Query: 2275 RSMLSHAKLPKSFWGEAVATAVDLINLSPSRPLNGKIPEEVWTGKKASYRNLRVFGCKAS 2096
R +LS + LPK FWGEA+ T V L+NL+P PL +P VW GK+ SY +LRVFGC A
Sbjct: 601 RCLLSQSMLPKYFWGEALNTVVHLLNLTPCVPLKFDVPNHVWNGKEVSYDHLRVFGCMAY 660
Query: 2095 VHIPKDERAKLDAKAKECVYLGSPRDELGFRLWDPANRKIVRSRDVVFFEDQTIQDIKKM 1916
VHIPKDER+KLD K+K+CV++G DE G+R +DP RK++RSRDVVF ED TI+DI K+
Sbjct: 661 VHIPKDERSKLDEKSKKCVFVGYGLDEFGYRFFDPVQRKLIRSRDVVFMEDYTIEDIDKV 720
Query: 1915 EKPKLKVSYDQSPLVVNKSGGETPQTEPDQDIQLXXXXXXXXXXXXXXXXXXXQSGEDVQ 1736
E ++ + + + TP D I+ + DV
Sbjct: 721 ENKDPTFEDEEIVDIGSTTIAPTPIIFEDAPIENQGMDLNVDNVLNPNDVVDVGATNDVV 780
Query: 1735 HEP--------QVXXXXXXXXXXXRYFSDEYINLTDEGEPQSFAEAIEMEEKDKWLQAME 1580
++ RY S+EY+ LTD GEP++F E +E E K +W+ AME
Sbjct: 781 ENEVVQEVASNELRRSTRDKRPSVRYPSNEYVFLTDGGEPENFKEVLEDENKKEWMDAME 840
Query: 1579 EEIQSLKENQTYDLVELPKGRKALRNKWVFKLKNEENNPNPRYKARIVVKGCNQKKGIDF 1400
+E+QSL+EN T++LV+LPKG++AL+N+WV+++K +E RYKAR+VVKG Q++GIDF
Sbjct: 841 DEMQSLRENNTFELVKLPKGKRALKNRWVYRIKQDECTSQRRYKARLVVKGFKQREGIDF 900
Query: 1399 DEIFSPVVKMTSIRAILGLAAKLDLEIEQLDVKTAFLHGDLEEEIYMEQPEGFEEPGKEH 1220
EIF+PVVKM SIR +LGLAA LDLE+E++DVKT FLHGDL EEIYMEQP+GF E GKE
Sbjct: 901 GEIFAPVVKMQSIRMVLGLAASLDLEVEKMDVKTTFLHGDLHEEIYMEQPDGFREKGKED 960
Query: 1219 LVCRLKKSLYGLKQAPRQWYKKFDSFMTQHNFKKTSADHCVFVKNYENGESIILLLYVDD 1040
VC+L KSLYGLKQAPRQWY+KF+S M +H +K T ADHCVF +N + IILLLYVDD
Sbjct: 961 YVCKLVKSLYGLKQAPRQWYQKFNSVMIEHGYKMTKADHCVFFRNLSEDDFIILLLYVDD 1020
Query: 1039 MLIVGKDXXXXXXXXXXXXXSFAMKDLGAVKRILGMKITRDRSKRMLWVSQEDYIEKVLK 860
MLIVGK+ SF+MKDLGA ++ILG++I RDR+++ L++SQE Y+EKVL+
Sbjct: 1021 MLIVGKNISRIRELKNTLSESFSMKDLGAARKILGIEIVRDRNEKKLYLSQEKYVEKVLR 1080
Query: 859 RFNMHNAKPARVPLAGHFKLSKSQCPXXXXXXXXXXKVPYSSAVGSLMYAMVCTRPDIGY 680
RF+M AK +PLA HFKLS CP +PYSSAVGSLMYAMVCTRPDI +
Sbjct: 1081 RFSMDKAKAVSIPLASHFKLSHKLCPSTDEEKLRMKSIPYSSAVGSLMYAMVCTRPDIAH 1140
Query: 679 AVGIVSRFLSNPGKEHWEAVKWILRYLRGTAKRSLCFGNGDQMLIGYSDSDMAGDVDSRK 500
AVG+VSR+LSNPGK HWEAVKW++RYLRG++ L G ML+GY+DSD+AG +D RK
Sbjct: 1141 AVGVVSRYLSNPGKVHWEAVKWVMRYLRGSSNLKLTLGCKKPMLVGYTDSDLAGSLDDRK 1200
Query: 499 STSGYLITFAGGAVSWQSKLQKCVTLSTAEAEYVAVTETSKEMLWMKNFLIELGHDQVDY 320
STSG ++TFAGGAV+WQSKLQKCV LST EAE++AV E SKE+LW++ F +ELG Q Y
Sbjct: 1201 STSGXMVTFAGGAVAWQSKLQKCVALSTTEAEFIAVVEASKELLWLRKFAMELGVKQEKY 1260
Query: 319 VVNCDNQSTIHLAKNPMFHSRSKHIDIRYHWIREALDEKRLKIEKIHTDLNWSDMMTKSL 140
V+ CDNQS IHL+KN FHSRSKHID+RYHWIR+ALD K +++EKIHTD N SDM+TK L
Sbjct: 1261 VLFCDNQSVIHLSKNSSFHSRSKHIDVRYHWIRDALDSKLMELEKIHTDDNGSDMLTKVL 1320
Query: 139 PTKKVEDCCQGAGVVVPPN 83
P K E C AG+++P N
Sbjct: 1321 PRGKFEFCRMEAGLMLPSN 1339
>gb|KYP66486.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1321
Score = 1360 bits (3519), Expect = 0.0
Identities = 703/1337 (52%), Positives = 910/1337 (68%), Gaps = 15/1337 (1%)
Frame = -2
Query: 4057 GDMFKLTADNYSYWKPMMEDHLYCKDLYEPITNE-DMPEGKTEKEWEVLNRKAVAMIRKY 3881
G M KLTA NYS WK MMED L DLY+PI + PE ++ +W+ L +K ++ IR++
Sbjct: 6 GTMVKLTATNYSLWKSMMEDRLNLLDLYDPIEGDGSKPEKMSDGDWKKLKKKTLSTIRQW 65
Query: 3880 IDKSLFEHVSTYTNAYELWTKLESMIQKKTPRNKAHLVRRLVKLEYSDGQNMIEHLNTFK 3701
+D +L+ VS T+ LW KLESM + K ++K ++R+L+ L+ +G+ + EHLN F+
Sbjct: 66 VDITLYNQVSKETDPQVLWKKLESMYETKNAQSKIFMMRKLMNLKLQEGRAVAEHLNDFE 125
Query: 3700 GIVNQLTKADMKIDDELQTXXXXXXLPESWDTLVVTLSNSTPGGKLSLDTITDSLLNEES 3521
G+V QL A + ++DE+Q LP+SWDTLVV+LSNS P GK+SL+ + +S+LNEE
Sbjct: 126 GLVMQLISAGLTLEDEMQALLLLGSLPDSWDTLVVSLSNSAPEGKVSLNMVRNSILNEEI 185
Query: 3520 RRKERGMSSHSEANVVENXXXXXXXXXXXXXXXXXXXXXXXXGLTCFYCGKDGHKKPECR 3341
RR++ + + A V E +C+ CGK GH K CR
Sbjct: 186 RRRDVA-KNETHALVTERRSRSKSRTPRGHRDHSKSRERR----SCYNCGKPGHLKKNCR 240
Query: 3340 FLKRDQKAGTVHPDVIDPKKKLEEKTTTAV--ASDDENVFLVSEVNYLNVVFDDCTWIVD 3167
FLK++ I K + ++ T A ASDDE L ++ ++ D WI+D
Sbjct: 241 FLKKE----------IQDKNQANDRNTAATTSASDDEITLLCNQGECCHIAEPDEEWIID 290
Query: 3166 TGASFHVTPHEGFFSSYQKGDFGKVKMGNHVTSKIVGIGEVILLTENGNKLVLKEVRHVP 2987
+ AS+H P +F++Y+KGDFG V MGN TS+IVGIG++ L T G L+LK+VRH+P
Sbjct: 291 SAASYHCVPKREYFTTYRKGDFGHVNMGNKSTSQIVGIGDIHLQTGVGCTLILKDVRHIP 350
Query: 2986 EMRLNLISAGKLDDAGMNNQFGGGKWKLSRGSMVVARGRKEGSLYITHGKLCKGEINVAQ 2807
++RLNLIS LD G + GG+WKL++GS+VVA+G+ +LY T+ K+CKG++N +
Sbjct: 351 DIRLNLISVNVLDKEGYEHSMKGGRWKLTKGSLVVAKGKLCCTLYKTYVKVCKGQLNAVE 410
Query: 2806 EE-SKELWHKRLGHMSEKGLEILAKDHL-QSIKGQPLESCEDCLAGKQRRVSFQRSDNGR 2633
+ S LWH+RL H+SEKGL++LAK L KG L C+ C+ GK RVSF++S N
Sbjct: 411 NDASPNLWHRRLAHISEKGLQLLAKQSLIPQAKGDFLNPCDYCVFGKHHRVSFKKSSN-- 468
Query: 2632 RRKHILDLVHSDVCSTSE-RSLGGAQYFVTFIDDHSRKLWVYLLKRKDEVLRAFKEFHVS 2456
R+K+ L+LVHSDVC E SLGG +YFVTFIDD SRK WVYLL+ K +V + F++FH
Sbjct: 469 RKKNKLELVHSDVCGPMEVESLGGNKYFVTFIDDASRKTWVYLLQAKSQVFQCFQQFHAM 528
Query: 2455 VERETGKKLKCLRSDNGGEYRGP-FEHYCKTHGIRHEKVPPKTPQMNGVAERFNRTIAEK 2279
VERETGK+LKC+R+DNGGEY F+ YC +GIRHEK P TPQ NG+AER NRTI EK
Sbjct: 529 VERETGKQLKCIRTDNGGEYISKEFKDYCSKYGIRHEKTVPGTPQHNGIAERMNRTIVEK 588
Query: 2278 VRSMLSHAKLPKSFWGEAVATAVDLINLSPSRPLNGKIPEEVWTGKKASYRNLRVFGCKA 2099
VR ML AKLPK FWGEAV TAV LIN PS PL IPE VW GK+ SY +L+VFGCKA
Sbjct: 589 VRCMLRMAKLPKPFWGEAVQTAVYLINRLPSVPLGFDIPERVWAGKEVSYSHLKVFGCKA 648
Query: 2098 SVHIPKDERAKLDAKAKECVYLGSPRDELGFRLWDPANRKIVRSRDVVFFEDQTIQDIKK 1919
+H+PK++R+KLD KA CV++G +E G++LWDP ++IVRSRDV+F E +TI+D+K
Sbjct: 649 FMHVPKEQRSKLDDKAIPCVFVGYGNEEFGYKLWDPERKRIVRSRDVIFHEHETIEDLKG 708
Query: 1918 MEKPKLKVS----YDQSPLVVNKSGGETPQTEPDQDIQLXXXXXXXXXXXXXXXXXXXQS 1751
E K P G +T + E + + + +
Sbjct: 709 GEAAKPMEDGVNPTSHVPSECATDGRQTQEPEHETEEPVFGDEESVDEEVVVPDTEANEQ 768
Query: 1750 GEDV----QHEPQVXXXXXXXXXXXRYFSDEYINLTDEGEPQSFAEAIEMEEKDKWLQAM 1583
GE Q EPQ+ +Y S EYI + DEGEP+SF E ++K W++AM
Sbjct: 769 GEPSYTSGQVEPQIRRSTRERQPSTKYPSSEYILIADEGEPESFQEVQSHKDKGCWVKAM 828
Query: 1582 EEEIQSLKENQTYDLVELPKGRKALRNKWVFKLKNEENNPNPRYKARIVVKGCNQKKGID 1403
+EE+ SLK N TY+LV+LPKGR+ L+NKWVFKLK ++ + R+KAR+VVKG +QK+GID
Sbjct: 829 QEEMDSLKRNNTYELVQLPKGRRVLKNKWVFKLK-KDGDKLVRHKARLVVKGFSQKQGID 887
Query: 1402 FDEIFSPVVKMTSIRAILGLAAKLDLEIEQLDVKTAFLHGDLEEEIYMEQPEGFEEPGKE 1223
F+EIFSPVVKM SIR ILGL A +DLE+EQLDVKTAFLHGDL+EEIYMEQPEGFE GKE
Sbjct: 888 FEEIFSPVVKMCSIRVILGLVASMDLELEQLDVKTAFLHGDLDEEIYMEQPEGFEVKGKE 947
Query: 1222 HLVCRLKKSLYGLKQAPRQWYKKFDSFMTQHNFKKTSADHCVFVKNYENGESIILLLYVD 1043
+VC+LKKSLYGLKQAPRQWYKKFDSF+ FK+T AD CV++ Y NG+ +ILLLYVD
Sbjct: 948 DMVCKLKKSLYGLKQAPRQWYKKFDSFIKSQGFKRTDADPCVYINRYPNGKFLILLLYVD 1007
Query: 1042 DMLIVGKDXXXXXXXXXXXXXSFAMKDLGAVKRILGMKITRDRSKRMLWVSQEDYIEKVL 863
DMLIVG+D +F MKD+GA K ILGM I RDR LW+SQE YIE+VL
Sbjct: 1008 DMLIVGQDVQMIKNLKVELSKAFDMKDMGAAKHILGMDIIRDRKAGKLWLSQERYIERVL 1067
Query: 862 KRFNMHNAKPARVPLAGHFKLSKSQCPXXXXXXXXXXKVPYSSAVGSLMYAMVCTRPDIG 683
+RFNM NAKP PL GHFKLSK CP +PYSSAVGSLMYAMVCTRPDI
Sbjct: 1068 ERFNMKNAKPVITPLVGHFKLSKKSCP---TIREKMSTIPYSSAVGSLMYAMVCTRPDIA 1124
Query: 682 YAVGIVSRFLSNPGKEHWEAVKWILRYLRGTAKRSLCFGNGDQMLIGYSDSDMAGDVDSR 503
+AVG+VSR+LSNPGK HWEAVKWILRYLRGT+K L FG +L GY+D+DMAGD+D R
Sbjct: 1125 HAVGVVSRYLSNPGKTHWEAVKWILRYLRGTSKLCLRFGGAKPILEGYTDADMAGDLDDR 1184
Query: 502 KSTSGYLITFAGGAVSWQSKLQKCVTLSTAEAEYVAVTETSKEMLWMKNFLIELGHDQVD 323
KSTSGY+ TF+GGA+SWQSKLQKC++LST EAEYVA TE KEMLWMK FL ELG Q +
Sbjct: 1185 KSTSGYIFTFSGGAISWQSKLQKCISLSTTEAEYVAATEAGKEMLWMKKFLQELGLKQEE 1244
Query: 322 YVVNCDNQSTIHLAKNPMFHSRSKHIDIRYHWIREALDEKRLKIEKIHTDLNWSDMMTKS 143
Y+V CD+QS + L+KN M+HSR+KHID+RYHWIR A++++ +++KIHTD N +DM+TK+
Sbjct: 1245 YIVYCDSQSALDLSKNTMYHSRTKHIDVRYHWIRLAIEKQLFQLKKIHTDRNAADMLTKN 1304
Query: 142 LPTKKVEDCCQGAGVVV 92
+ +K+ C + G+ V
Sbjct: 1305 VTREKLRQCIELVGMTV 1321
>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
Length = 1415
Score = 1337 bits (3460), Expect = 0.0
Identities = 684/1334 (51%), Positives = 893/1334 (66%), Gaps = 18/1334 (1%)
Frame = -2
Query: 4054 DMFKLTADNYSYWKPMMEDHLYCKDLYEPITNEDMPEGKTEKEWEVLNRKAVAMIRKYID 3875
+M +L NY WK M+D L+ K L+ P+ PE +++EW+ +++ IR++++
Sbjct: 7 NMVRLNGRNYHIWKAKMKDLLFVKKLHLPVFASAKPENMSDEEWDFEHQQVCGYIRQWVE 66
Query: 3874 KSLFEHVSTYTNAYELWTKLESMIQKKTPRNKAHLVRRLVKLEYSDGQNMIEHLNTFKGI 3695
++ H+ T+A LW KLE++ KT NK L+++++ + Y +G + +H+N F+G+
Sbjct: 67 DNVLNHIINETHARSLWNKLETLYASKTGNNKLFLLKQMMNIRYREGTLINDHVNDFQGV 126
Query: 3694 VNQLTKADMKIDDELQTXXXXXXLPESWDTLVVTLSNSTPGGKLSLDTITDSLLNEESRR 3515
++QL+ +K +DE+ LP+SW+T V+L+NS P G ++++ + +LNEE+RR
Sbjct: 127 LDQLSGMGIKFEDEVLGLWLLNTLPDSWETFRVSLTNSAPNGVVTMEYVKSGILNEEARR 186
Query: 3514 KERGMS-SHSEANVVENXXXXXXXXXXXXXXXXXXXXXXXXGLTCFYCGKDGHKKPECRF 3338
+ + S S S+ V ++ + C YCGK H K
Sbjct: 187 RSQDTSTSQSDILVTDDRGRNKQKGQRGRDKSRSKSRSRYKDIECHYCGKKSHIKKYSFK 246
Query: 3337 LKRDQKAGTVHPDVIDPKKKLEEKTTTAVASDDENVFLVSEVNYLNVVFDDCTWIVDTGA 3158
KR++K D T VA+ ++ + + N +NV + TWIVD+GA
Sbjct: 247 WKREKKQDNKDGD-----------TGNQVATVRADLLVACDDNVINVACHETTWIVDSGA 295
Query: 3157 SFHVTPHEGFFSSYQKGDFGKVKMGNHVTSKIVGIGEVILLTENGNKLVLKEVRHVPEMR 2978
++HVTP + FF+SY GDFG+++MGN K+ G G V L T NG KLVLK V+H P++R
Sbjct: 296 AYHVTPRKEFFTSYTPGDFGELRMGNDGQVKVTGTGTVCLETSNGTKLVLKNVKHAPDIR 355
Query: 2977 LNLISAGKLDDAGMNNQFGGGKWKLSRGSMVVARGRKEGSLYITHGKLCKGEINVAQEE- 2801
LNLIS GKLDD G FG G WK+++GS+VVARG K +LY + +NV ++E
Sbjct: 356 LNLISTGKLDDDGFCCFFGDGHWKITKGSLVVARGNKSSNLYSLQSSVSDDSVNVVEKEC 415
Query: 2800 SKELWHKRLGHMSEKGLEILAK-DHLQSIKGQPLESCEDCLAGKQRRVSFQRSDNGRRRK 2624
+ ELWHKRLGHMS KG++ LAK L +K L+ C CLAGKQRRVSF S R+
Sbjct: 416 ASELWHKRLGHMSVKGIDYLAKKSKLSGVKEAKLDKCVHCLAGKQRRVSFM-SHPPTRKS 474
Query: 2623 HILDLVHSDVCSTSE-RSLGGAQYFVTFIDDHSRKLWVYLLKRKDEVLRAFKEFHVSVER 2447
LDL+HSDVC + RSLGGA YFVTFIDD+SRKLWVY LK K +VL FKEFH VER
Sbjct: 475 EPLDLIHSDVCGPMKVRSLGGASYFVTFIDDYSRKLWVYTLKHKSDVLGVFKEFHALVER 534
Query: 2446 ETGKKLKCLRSDNGGEYRGPFEHYCKTHGIRHEKVPPKTPQMNGVAERFNRTIAEKVRSM 2267
+TGKKLKC+R+DNGGEY GPF+ YC+ +GIRH+K PPK PQ+NG+AER NRTI E+VR M
Sbjct: 535 QTGKKLKCIRTDNGGEYCGPFDEYCRRYGIRHQKTPPKIPQLNGLAERMNRTIMERVRCM 594
Query: 2266 LSHAKLPKSFWGEAVATAVDLINLSPSRPLNGKIPEEVWTGKKASYRNLRVFGCKASVHI 2087
L AKLP SFW EAV+TAV +INLSP L ++P++VW GK SY +LRVFGCKA VH+
Sbjct: 595 LDDAKLPSSFWAEAVSTAVHVINLSPVIALKNEVPDKVWCGKDVSYDHLRVFGCKAFVHV 654
Query: 2086 PKDERAKLDAKAKECVYLGSPRDELGFRLWDPANRKIVRSRDVVFFEDQTIQDIKKMEKP 1907
P+DER+KLD+K ++C+++G DE G+RL+DP +K+VRSRDVVFFE+QTI+DI K+++P
Sbjct: 655 PRDERSKLDSKTRQCIFIGYGFDEFGYRLYDPVEKKLVRSRDVVFFENQTIEDIDKVKQP 714
Query: 1906 KLKVSYDQSPLVVNKSGGETPQTEPDQDIQLXXXXXXXXXXXXXXXXXXXQSGEDVQHEP 1727
+ + S +V+ T+ ++Q +DV H+
Sbjct: 715 ESR----DSGSLVDIEPVSRRYTDDVDEVQENVQNGDPVPDYQGDTVDVDGHADDVVHQE 770
Query: 1726 Q----------VXXXXXXXXXXXRYFSDEYINLTDEGEPQSFAEAIEMEEKDKWLQAMEE 1577
Q RY +Y+ LTD GEP+S+ EA+E ++K +W +AM+E
Sbjct: 771 QEVPSQVPVDLPRRSDRERRPSTRYSPSQYVLLTDGGEPESYEEAMESDQKRQWFEAMQE 830
Query: 1576 EIQSLKENQTYDLVELPKGRKALRNKWVFKLKNEENNPNPRYKARIVVKGCNQKKGIDFD 1397
E+ SL N T++LV+ PK RKAL+N+WV+++K+EE PR+KAR+VVKG +QKKGIDFD
Sbjct: 831 EMNSLYVNDTFELVKAPKNRKALKNRWVYRVKHEEGTSVPRFKARLVVKGFSQKKGIDFD 890
Query: 1396 EIFSPVVKMTSIRAILGLAAKLDLEIEQLDVKTAFLHGDLEEEIYMEQPEGFEEPGKEHL 1217
EIFSPVVK +SIR +LGLAA+LD+EIEQ+DVKTAFLHGDL+EEIYMEQPEGF+ GKE
Sbjct: 891 EIFSPVVKFSSIRVVLGLAARLDIEIEQMDVKTAFLHGDLDEEIYMEQPEGFKVKGKEDY 950
Query: 1216 VCRLKKSLYGLKQAPRQWYKKFDSFMTQHNFKKTSADHCVFVKNYENGESIILLLYVDDM 1037
VCRLKKSLYGLKQAPRQWYKKF S M++H +KKTS+DHCVFV Y + + +ILLLYVDDM
Sbjct: 951 VCRLKKSLYGLKQAPRQWYKKFTSVMSKHGYKKTSSDHCVFVNRYSDDDFVILLLYVDDM 1010
Query: 1036 LIVGKDXXXXXXXXXXXXXSFAMKDLGAVKRILGMKITRDRSKRMLWVSQEDYIEKVLKR 857
LIVG++ SF+MKD+G K+ILGMKI RDR + LW+SQE YIEKVL+R
Sbjct: 1011 LIVGRNASRIQELKQELSKSFSMKDMGPAKQILGMKIIRDRQNKKLWLSQEKYIEKVLER 1070
Query: 856 FNMHNAKPARVPLAGHFKLSKSQCPXXXXXXXXXXKVPYSSAVGSLMYAMVCTRPDIGYA 677
F+M+ AKP PL HFKL K QCP +VPYSSAVGSLMYAMVCTRPDI +A
Sbjct: 1071 FHMNEAKPVSTPLDMHFKLCKKQCPSSEKEKEEMQRVPYSSAVGSLMYAMVCTRPDIAHA 1130
Query: 676 VGIVSRFLSNPGKEHWEAVKWILRYLRGTAKRSLCFGNGDQMLIGYSDSDMAGDVDSRKS 497
VG+VSRFLSNPG+EHW+AVKWILRYLRGT+ SLCFG G +L GY+DSDMAGD+D+RKS
Sbjct: 1131 VGVVSRFLSNPGREHWDAVKWILRYLRGTSSLSLCFGTGKPILTGYTDSDMAGDIDTRKS 1190
Query: 496 TSGYLITFAGGAVSWQSKLQKCVTLSTAEAEYVAVTETSKEMLWMKNFLIELGHDQVDYV 317
TSGYLIT+AGGAVSWQS+LQKCV LST EAE++A E SKEMLWMK FL ELG Q
Sbjct: 1191 TSGYLITYAGGAVSWQSRLQKCVDLSTTEAEFIASVEASKEMLWMKKFLQELGFVQ---- 1246
Query: 316 VNCDNQSTIHLAKNPMFHSRSKHIDIRYHWIREALDEKRLKIEKIHTDLNWSDMMTKSLP 137
RSKHID RYHWIR+ L+ K L++EKIHTD N SDMMTK+LP
Sbjct: 1247 ------------------DRSKHIDTRYHWIRDILECKMLELEKIHTDDNGSDMMTKALP 1288
Query: 136 TKKVE----DCCQG 107
K E +CC G
Sbjct: 1289 RGKFEEAMGECCNG 1302
>emb|CAN75440.1| hypothetical protein VITISV_007304 [Vitis vinifera]
Length = 1362
Score = 1278 bits (3307), Expect = 0.0
Identities = 653/1329 (49%), Positives = 866/1329 (65%), Gaps = 25/1329 (1%)
Frame = -2
Query: 4006 MEDHLYCKDLYEPITNEDMPEGKTEKEWEVLNRKAVAMIRKYIDKSLFEHVSTYTNAYEL 3827
MED LY KD Y + + PE KT+ EW +L+R+ IR ++D + HVS +
Sbjct: 1 MEDLLYVKDYYLXVFXSERPENKTDAEWNLLHRQVCGYIRXWVDDNXLNHVSEEKHXRSX 60
Query: 3826 WTKLESMIQKKTPRNKAHLVRRLVKLEYSDGQNMIEHLNTFKGIVNQLTKADMKIDDELQ 3647
W KLE + +KT NK L+++++ L+Y DG +HLNTF+GI+NQL ++K ++E+Q
Sbjct: 61 WNKLEQLYARKTXNNKLFLIKKMMSLKYQDGTXXTDHLNTFQGIINQLAGMNIKFEEEVQ 120
Query: 3646 TXXXXXXLPESWDTLVVTLSNSTPGGKLSLDTITDSLLNEESRRKERGMSSHSEANVVEN 3467
LP+SW+T +LSNS P G +++D + +LNEE RRK +G SS S V+
Sbjct: 121 GLWLLGTLPDSWETFRTSLSNSAPDGIMNMDLVKSCVLNEEMRRKSQGSSSQSNVLVIXK 180
Query: 3466 XXXXXXXXXXXXXXXXXXXXXXXXGLTCFYCGKDGHKKPECRFLKRDQKAGTVHPDVIDP 3287
+ C YC GH K CR LKRD K G V
Sbjct: 181 XGRSKSRGPKNRDRSKSKTNKFAN-VECHYCHLKGHIKKYCRQLKRDMKQGKVKE----- 234
Query: 3286 KKKLEEKTTTAVASDDENVFLVSEVNYLNVVFDDCTWIVDTGASFHVTPHEGFFSSYQKG 3107
KK VA+ + +V + + +N + W++D GAS H TP + FF+SY G
Sbjct: 235 KKNDNGGEDDQVATTISDFLIVYDSDVVNFACQESXWVIDXGASIHATPQKDFFTSYTSG 294
Query: 3106 DFGKVKMGNHVTSKIVGIGEVILLTENGNKLVLKEVRHVPEMRLNLISAGKLDDAGMNNQ 2927
DFG V+MGN ++K +G+G+V L T NG L LK V+H+P++R+NLIS GKLDD G N
Sbjct: 295 DFGSVRMGNDGSAKAIGMGDVRLETSNGTMLTLKNVKHIPDIRMNLISTGKLDDEGFCNT 354
Query: 2926 FGGGKWKLSRGSMVVARGRKEGSLYITHGKLCKGEINVAQEESK-ELWHKRLGHMSEKGL 2750
F +WKL+RGSMV+A+G K SLY+ ++ IN ++S ELWH +LGHMSEKGL
Sbjct: 355 FRDSQWKLTRGSMVIAKGNKSSSLYLMQARVIDSSINAVDDDSTFELWHNKLGHMSEKGL 414
Query: 2749 EILAKDHL-QSIKGQPLESCEDCLAGKQRRVSFQRSDNGRRRKHILDLVHSDVCSTSE-R 2576
ILAK +L +K L+ C CLAGKQ RV+F+ + R+ +LDLV+SDV + +
Sbjct: 415 MILAKKNLLXGMKKGSLKRCAHCLAGKQTRVAFKTLHH-TRKPGMLDLVYSDVYGPMKTK 473
Query: 2575 SLGGAQYFVTFIDDHSRKLWVYLLKRKDEVLRAFKEFHVSVERETGKKLKCLRSDNGGEY 2396
+LGG+ YFVTFIDDHSRK+WVY LK KD+VL FK+FH VER++G+KLKC+R+DNGGEY
Sbjct: 474 TLGGSLYFVTFIDDHSRKIWVYTLKTKDQVLDVFKQFHALVERQSGEKLKCIRTDNGGEY 533
Query: 2395 RGPFEHYCKTHGIRHEKVPPKTPQMNGVAERFNRTIAEKVRSMLSHAKLPKSFWGEAVAT 2216
GPF+ YC+ HG RH+K PPKTPQ+NG+AER NRT+ E+VR +LS ++LP+SFWGEA+ T
Sbjct: 534 SGPFDEYCRQHGFRHQKTPPKTPQLNGLAERMNRTLVERVRCLLSQSQLPRSFWGEALNT 593
Query: 2215 AVDLINLSPSRPLNGKIPEEVWTGKKASYRNLRVFGCKASVHIPKDERAKLDAKAKECVY 2036
V ++NL+P PL +P+ +W+ + SY +LRVFGCKA VHIPKDER+KLDAK + CV+
Sbjct: 594 IVHVLNLTPCVPLEFDVPDRIWSNNEISYDHLRVFGCKAFVHIPKDERSKLDAKTRPCVF 653
Query: 2035 LGSPRDELGFRLWDPANRKIVRSRDVVFFEDQTIQDIKKMEKPKLK-----VSYDQSPLV 1871
+G +DELG++ +D +K+ RS DVVF ED TIQDI+K + + + D +PL
Sbjct: 654 IGYGQDELGYKFYDLVQKKLXRSXDVVFMEDHTIQDIEKTNPMESQHSGDLIDLDPAPLT 713
Query: 1870 VNKSGGETPQTEPDQDI-------QLXXXXXXXXXXXXXXXXXXXQSGEDVQHEPQ---- 1724
+ E + D+ Q+ +D HE
Sbjct: 714 NLPTQVEDGAHDDQHDMGDVETPTQVEDETHDDQHDMGDVETPTQVEVDDDVHEQSPTAE 773
Query: 1723 ------VXXXXXXXXXXXRYFSDEYINLTDEGEPQSFAEAIEMEEKDKWLQAMEEEIQSL 1562
+ RY D+Y+ LTDEGEP+S+ EA++ E K KW+ AM +E++SL
Sbjct: 774 APSDIPLRRSTRDRHPSTRYSVDDYVLLTDEGEPESYVEAMKDENKMKWVDAMRDEMESL 833
Query: 1561 KENQTYDLVELPKGRKALRNKWVFKLKNEENNPNPRYKARIVVKGCNQKKGIDFDEIFSP 1382
EN +++LV+LPKG++AL+N+WV+++K EE+ PRYKAR+VVK K+
Sbjct: 834 HENHSFELVKLPKGKRALKNRWVYRVKQEEHTSQPRYKARLVVKRVQSKE---------- 883
Query: 1381 VVKMTSIRAILGLAAKLDLEIEQLDVKTAFLHGDLEEEIYMEQPEGFEEPGKEHLVCRLK 1202
DLEI+Q+DVKTAFLHGDL++EIYMEQPEGF GKE VC+LK
Sbjct: 884 ---------------SFDLEIQQMDVKTAFLHGDLDKEIYMEQPEGFVLKGKEDYVCKLK 928
Query: 1201 KSLYGLKQAPRQWYKKFDSFMTQHNFKKTSADHCVFVKNYENGESIILLLYVDDMLIVGK 1022
KSLYGLKQAPRQWYKKF+S M + ++KT++DHCVFV+ + + + +ILLLYVDD+LIV +
Sbjct: 929 KSLYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDILIVCR 988
Query: 1021 DXXXXXXXXXXXXXSFAMKDLGAVKRILGMKITRDRSKRMLWVSQEDYIEKVLKRFNMHN 842
+ SFAMKDLG VKRILG++I RDR+ + L + QE YIEKV RFNM
Sbjct: 989 NVSRIDNLKKQLSKSFAMKDLGPVKRILGIRIERDRASKKLCMLQEQYIEKVFARFNMSK 1048
Query: 841 AKPARVPLAGHFKLSKSQCPXXXXXXXXXXKVPYSSAVGSLMYAMVCTRPDIGYAVGIVS 662
K PLA HFKLS P +VPY+SA+GSLMYAMVCTRPDI YAVG+VS
Sbjct: 1049 FKVVSSPLASHFKLSSRHSPSTDKEKEDMRRVPYASAIGSLMYAMVCTRPDIAYAVGVVS 1108
Query: 661 RFLSNPGKEHWEAVKWILRYLRGTAKRSLCFGNGDQMLIGYSDSDMAGDVDSRKSTSGYL 482
RFLSNPG+ HWEAVKWI+RYLRGT+K L FG+G +L+GY+DSDMAGDVD+RKSTSGYL
Sbjct: 1109 RFLSNPGRHHWEAVKWIMRYLRGTSKLKLTFGSGKPILVGYTDSDMAGDVDNRKSTSGYL 1168
Query: 481 ITFAGGAVSWQSKLQKCVTLSTAEAEYVAVTETSKEMLWMKNFLIELGHDQVDYVVNCDN 302
+TF+GGAVSWQS+LQKCV LST EAEY+A E KE+LWMK F+ ELG Q YVV CDN
Sbjct: 1169 MTFSGGAVSWQSRLQKCVALSTTEAEYIAAVEACKELLWMKCFMQELGFKQQRYVVYCDN 1228
Query: 301 QSTIHLAKNPMFHSRSKHIDIRYHWIREALDEKRLKIEKIHTDLNWSDMMTKSLPTKKVE 122
QS IHL+KN +H+RSKHID+RYHW+R+AL++ +IEKIHTD N SDM+TK+LP +K+
Sbjct: 1229 QSAIHLSKNSTYHARSKHIDVRYHWMRDALNDNLFEIEKIHTDNNGSDMLTKTLPREKLG 1288
Query: 121 DCCQGAGVV 95
CC AG++
Sbjct: 1289 VCCSIAGMI 1297
>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease
emb|CAA32025.1| unnamed protein product [Nicotiana tabacum]
Length = 1328
Score = 1261 bits (3264), Expect = 0.0
Identities = 674/1335 (50%), Positives = 872/1335 (65%), Gaps = 16/1335 (1%)
Frame = -2
Query: 4054 DMFKLTADN-YSYWKPMMEDHLYCKDLYEPI-TNEDMPEGKTEKEWEVLNRKAVAMIRKY 3881
++ K DN +S W+ M D L + L++ + + P+ ++W L+ +A + IR +
Sbjct: 7 EVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIRLH 66
Query: 3880 IDKSLFEHVSTYTNAYELWTKLESMIQKKTPRNKAHLVRRLVKLEYSDGQNMIEHLNTFK 3701
+ + ++ A +WT+LES+ KT NK +L ++L L S+G N + HLN F
Sbjct: 67 LSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFN 126
Query: 3700 GIVNQLTKADMKIDDELQTXXXXXXLPESWDTLVVTLSNSTPGGKLSLDTITDSLLNEES 3521
G++ QL +KI++E + LP S+D L T+ + +L D + LLNE+
Sbjct: 127 GLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELK-DVTSALLLNEKM 185
Query: 3520 RRKERGMSSHSEANVVENXXXXXXXXXXXXXXXXXXXXXXXXGLT----CFYCGKDGHKK 3353
R+K + +A + E + C+ C + GH K
Sbjct: 186 RKKPE---NQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQPGHFK 242
Query: 3352 PECRFLKRDQKAGTVHPDVIDPKKKLEEKTTTAVASDDENV--FLVSEVNYLNVVFDDCT 3179
+C ++ + + + + T A+ +++NV F+ E +++ +
Sbjct: 243 RDCPNPRKGKG---------ETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLSGPESE 293
Query: 3178 WIVDTGASFHVTPHEGFFSSYQKGDFGKVKMGNHVTSKIVGIGEVILLTENGNKLVLKEV 2999
W+VDT AS H TP F Y GDFG VKMGN SKI GIG++ + T G LVLK+V
Sbjct: 294 WVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDV 353
Query: 2998 RHVPEMRLNLISAGKLDDAGMNNQFGGGKWKLSRGSMVVARGRKEGSLYITHGKLCKGEI 2819
RHVP++R+NLIS LD G + F KW+L++GS+V+A+G G+LY T+ ++C+GE+
Sbjct: 354 RHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTNAEICQGEL 413
Query: 2818 NVAQEE-SKELWHKRLGHMSEKGLEILAKDHLQSI-KGQPLESCEDCLAGKQRRVSFQRS 2645
N AQ+E S +LWHKR+GHMSEKGL+ILAK L S KG ++ C+ CL GKQ RVSFQ S
Sbjct: 414 NAAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTS 473
Query: 2644 DNGRRRKHILDLVHSDVCSTSE-RSLGGAQYFVTFIDDHSRKLWVYLLKRKDEVLRAFKE 2468
R+ +ILDLV+SDVC E S+GG +YFVTFIDD SRKLWVY+LK KD+V + F++
Sbjct: 474 SE--RKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQK 531
Query: 2467 FHVSVERETGKKLKCLRSDNGGEYRG-PFEHYCKTHGIRHEKVPPKTPQMNGVAERFNRT 2291
FH VERETG+KLK LRSDNGGEY FE YC +HGIRHEK P TPQ NGVAER NRT
Sbjct: 532 FHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRT 591
Query: 2290 IAEKVRSMLSHAKLPKSFWGEAVATAVDLINLSPSRPLNGKIPEEVWTGKKASYRNLRVF 2111
I EKVRSML AKLPKSFWGEAV TA LIN SPS PL +IPE VWT K+ SY +L+VF
Sbjct: 592 IVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVF 651
Query: 2110 GCKASVHIPKDERAKLDAKAKECVYLGSPRDELGFRLWDPANRKIVRSRDVVFFEDQ--T 1937
GC+A H+PK++R KLD K+ C+++G +E G+RLWDP +K++RSRDVVF E + T
Sbjct: 652 GCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRESEVRT 711
Query: 1936 IQDIKKMEKPKLKVSYDQSPLVVNK--SGGETPQTEPDQDIQLXXXXXXXXXXXXXXXXX 1763
D+ + K + ++ P N S T +Q Q
Sbjct: 712 AADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGEQLDEGVEEV 771
Query: 1762 XXQSGEDVQHEPQVXXXXXXXXXXXRYFSDEYINLTDEGEPQSFAEAIEMEEKDKWLQAM 1583
+ + QH+P + RY S EY+ ++D+ EP+S E + EK++ ++AM
Sbjct: 772 EHPTQGEEQHQP-LRRSERPRVESRRYPSTEYVLISDDREPESLKEVLSHPEKNQLMKAM 830
Query: 1582 EEEIQSLKENQTYDLVELPKGRKALRNKWVFKLKNEENNPNPRYKARIVVKGCNQKKGID 1403
+EE++SL++N TY LVELPKG++ L+ KWVFKLK + + RYKAR+VVKG QKKGID
Sbjct: 831 QEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGID 890
Query: 1402 FDEIFSPVVKMTSIRAILGLAAKLDLEIEQLDVKTAFLHGDLEEEIYMEQPEGFEEPGKE 1223
FDEIFSPVVKMTSIR IL LAA LDLE+EQLDVKTAFLHGDLEEEIYMEQPEGFE GK+
Sbjct: 891 FDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKK 950
Query: 1222 HLVCRLKKSLYGLKQAPRQWYKKFDSFMTQHNFKKTSADHCVFVKNYENGESIILLLYVD 1043
H+VC+L KSLYGLKQAPRQWY KFDSFM + KT +D CV+ K + IILLLYVD
Sbjct: 951 HMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVD 1010
Query: 1042 DMLIVGKDXXXXXXXXXXXXXSFAMKDLGAVKRILGMKITRDRSKRMLWVSQEDYIEKVL 863
DMLIVGKD SF MKDLG ++ILGMKI R+R+ R LW+SQE YIE+VL
Sbjct: 1011 DMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVL 1070
Query: 862 KRFNMHNAKPARVPLAGHFKLSKSQCPXXXXXXXXXXKVPYSSAVGSLMYAMVCTRPDIG 683
+RFNM NAKP PLAGH KLSK CP KVPYSSAVGSLMYAMVCTRPDI
Sbjct: 1071 ERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIA 1130
Query: 682 YAVGIVSRFLSNPGKEHWEAVKWILRYLRGTAKRSLCFGNGDQMLIGYSDSDMAGDVDSR 503
+AVG+VSRFL NPGKEHWEAVKWILRYLRGT LCFG D +L GY+D+DMAGD+D+R
Sbjct: 1131 HAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGYTDADMAGDIDNR 1190
Query: 502 KSTSGYLITFAGGAVSWQSKLQKCVTLSTAEAEYVAVTETSKEMLWMKNFLIELGHDQVD 323
KS++GYL TF+GGA+SWQSKLQKCV LST EAEY+A TET KEM+W+K FL ELG Q +
Sbjct: 1191 KSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKE 1250
Query: 322 YVVNCDNQSTIHLAKNPMFHSRSKHIDIRYHWIREALDEKRLKIEKIHTDLNWSDMMTKS 143
YVV CD+QS I L+KN M+H+R+KHID+RYHWIRE +D++ LK+ KI T+ N +DM+TK
Sbjct: 1251 YVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKV 1310
Query: 142 LPTKKVEDCCQGAGV 98
+P K E C + G+
Sbjct: 1311 VPRNKFELCKELVGM 1325
>ref|XP_017609491.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
1-94 [Gossypium arboreum]
Length = 1184
Score = 1175 bits (3039), Expect = 0.0
Identities = 624/1231 (50%), Positives = 793/1231 (64%), Gaps = 12/1231 (0%)
Frame = -2
Query: 3742 SDGQNMIEHLNTFKGIVNQLTKADMKIDDELQTXXXXXXLPESWDTLVVTLSNSTPGGKL 3563
SD + EH + ++NQL +K DDE+ LP+SW+T V+L NS P G +
Sbjct: 24 SDEEWEFEHQQS---VMNQLLGMGVKFDDEILGLGLLATLPDSWETFRVSLINSAPQGII 80
Query: 3562 SLDTITDSLLNEESRRKERGMSSHSEANVVENXXXXXXXXXXXXXXXXXXXXXXXXGLTC 3383
+LD +LNEE RR+ +G +S SE V+EN L C
Sbjct: 81 TLDLANSGVLNEEVRRRSQGSTSQSEVLVIENRGRNRDKDGKGRDKSRSKSRSRYKNLEC 140
Query: 3382 FYCGKDGHKKPECRFLKRDQKAGTVHPDVIDPKKKLEEKTTTAVASDDENVFLVSEVNYL 3203
+CGK GH K C K++ K G D D +K T T E++ ++ + N +
Sbjct: 141 HHCGKKGHIKKYCFKWKKENKGGGDKHDRNDDEKSERVATVTR-----EDLLVICDENLV 195
Query: 3202 NVVFDDCTWIVDTGASFHVTPHEGFFSSYQKGDFGKVKMGNHVTSKIVGIGEVILLTENG 3023
N+ D+ +W++DTGASFH MGN ++G+G+V L++ NG
Sbjct: 196 NLACDETSWVIDTGASFH--------------------MGNDGLVSVIGMGDVSLVSNNG 235
Query: 3022 NKLVLKEVRHVPEMRLNLISAGKLDDAGMNNQFGGGKWKLSRGSMVVARGRKEGSLYITH 2843
KL L +VRH P++RLNLISAGKLDD G N F G+WKL++GS+VVARG+K +LY+
Sbjct: 236 TKLTLNDVRHEPDVRLNLISAGKLDDEGFCNTFSEGQWKLTKGSLVVARGKKSSNLYLMQ 295
Query: 2842 GKLCKGEINVA-QEESKELWHKRLGHMSEKGLEILAK-DHLQSIKGQPLESCEDCLAGKQ 2669
+ +NV + S ELWHKRL HMSEKGL LAK + L +K L++C CLAGKQ
Sbjct: 296 ALTSRETVNVTLNDNSTELWHKRLSHMSEKGLSCLAKKNQLSGLKNATLKNCAHCLAGKQ 355
Query: 2668 RRVSFQRSDNGRRRKHILDLVHSDVCSTSE-RSLGGAQYFVTFIDDHSRKLWVYLLKRKD 2492
+RVSF RS ++ +L+LVHSDVC + RS GGA YFVTFIDD SRKLWVY LK K+
Sbjct: 356 KRVSF-RSHPPHKKSELLELVHSDVCGPIKVRSYGGALYFVTFIDDCSRKLWVYTLKSKN 414
Query: 2491 EVLRAFKEFHVSVERETGKKLKCLRSDNGGEYRGPFEHYCKTHGIRHEKVPPKTPQMNGV 2312
+V FK+F SVERET KKLKC+R+DNGGEY F YC GIRH++ PPKTPQ+NG+
Sbjct: 415 QVFEVFKQFQASVERETEKKLKCIRTDNGGEYTRSFHEYCLRQGIRHQRTPPKTPQLNGL 474
Query: 2311 AERFNRTIAEKVRSMLSHAKLPKSFWGEAVATAVDLINLSPSRPLNGKIPEEVWTGKKAS 2132
AER NRT+ E+VR +LS AKLP+SFW EA+ T +INLSPS PL G +P+ VW K S
Sbjct: 475 AERMNRTLIERVRCLLSDAKLPRSFWAEALNTVTHVINLSPSVPLKGDVPDRVWFVKGVS 534
Query: 2131 YRNLRVFGCKASVHIPKDERAKLDAKAKECVYLGSPRDELGFRLWDPANRKIVRSRDVVF 1952
Y +LRVFGCK VH +K+VRSRDVVF
Sbjct: 535 YDHLRVFGCKVFVH-----------------------------------KKLVRSRDVVF 559
Query: 1951 FEDQTIQDIKKMEKPKLKVS---YDQSPLVVNKSGGETPQTEPDQDIQLXXXXXXXXXXX 1781
EDQTI DI K EK + S D +P+ ++ S +P QD +
Sbjct: 560 IEDQTIDDIDKTEKVDSQGSGDLIDVNPVPLDSS------PDPIQD-DVHGDVSGDHQTI 612
Query: 1780 XXXXXXXXQSGEDVQHEP------QVXXXXXXXXXXXRYFSDEYINLTDEGEPQSFAEAI 1619
D Q P + +Y DEY+ LTD GEP + EA+
Sbjct: 613 GDFATPIDDVVNDQQQAPIAPPAVPLRRSSRDRRSSVKYSPDEYVLLTDGGEPGCYEEAM 672
Query: 1618 EMEEKDKWLQAMEEEIQSLKENQTYDLVELPKGRKALRNKWVFKLKNEENNPNPRYKARI 1439
E E KD+W++AM++++QSL EN T++LV+LPKG++AL+N+WV++LK EE + +PRYKAR+
Sbjct: 673 ESECKDQWVEAMKDKLQSLHENHTFELVKLPKGKRALKNRWVYRLKQEEKSSSPRYKARL 732
Query: 1438 VVKGCNQKKGIDFDEIFSPVVKMTSIRAILGLAAKLDLEIEQLDVKTAFLHGDLEEEIYM 1259
VVKG QKKG+DF+EIFSPVVKM+SIR IL LAA DLE+EQ+DVK AFLHGDLE+E+YM
Sbjct: 733 VVKGYTQKKGVDFEEIFSPVVKMSSIRTILSLAACYDLEVEQMDVKIAFLHGDLEDELYM 792
Query: 1258 EQPEGFEEPGKEHLVCRLKKSLYGLKQAPRQWYKKFDSFMTQHNFKKTSADHCVFVKNYE 1079
EQPEGF KE VCRLKKSLYGLKQAPRQWYKKF+S M + ++KKT++DHCVFVK +
Sbjct: 793 EQPEGFVAQRKEDYVCRLKKSLYGLKQAPRQWYKKFESVMGEQSYKKTTSDHCVFVKKFS 852
Query: 1078 NGESIILLLYVDDMLIVGKDXXXXXXXXXXXXXSFAMKDLGAVKRILGMKITRDRSKRML 899
+ IILLLYVDDMLIVG++ SFAMKDLG K+ILG+++TRDR + L
Sbjct: 853 GDDFIILLLYVDDMLIVGQNASRIEKLKQELSKSFAMKDLGPAKQILGIRLTRDRKAKKL 912
Query: 898 WVSQEDYIEKVLKRFNMHNAKPARVPLAGHFKLSKSQCPXXXXXXXXXXKVPYSSAVGSL 719
W+SQE YIEKVL++F+M AK P A HF+LS P K+PYSSAVGSL
Sbjct: 913 WLSQERYIEKVLQKFSMDKAKAVNTPFAMHFRLSVKHSPSTEKEKEEMQKIPYSSAVGSL 972
Query: 718 MYAMVCTRPDIGYAVGIVSRFLSNPGKEHWEAVKWILRYLRGTAKRSLCFGNGDQMLIGY 539
MYAMVCTRPD+ YAVG VSRFLSN G+EHW AVKWI+RYLRGT+ LCFGN + +GY
Sbjct: 973 MYAMVCTRPDLAYAVGTVSRFLSNLGREHWNAVKWIMRYLRGTSNMKLCFGNEKPVTVGY 1032
Query: 538 SDSDMAGDVDSRKSTSGYLITFAGGAVSWQSKLQKCVTLSTAEAEYVAVTETSKEMLWMK 359
+DSDMAGD+DSR+STSGYLIT+AGGAV+WQS+ QKCV LST E+E++A TE KEMLWMK
Sbjct: 1033 TDSDMAGDIDSRRSTSGYLITYAGGAVAWQSRQQKCVALSTTESEFIAATEACKEMLWMK 1092
Query: 358 NFLIELGHDQVDYVVNCDNQSTIHLAKNPMFHSRSKHIDIRYHWIREALDEKRLKIEKIH 179
F+ ELG Q YV+ CD+QS IHL+KN FH+RSKHID+RYHWIR+ L+ K L++EKIH
Sbjct: 1093 KFVQELGFTQEKYVLYCDSQSAIHLSKNSTFHARSKHIDVRYHWIRDVLEAKLLELEKIH 1152
Query: 178 TDLNWSDMMTKSLPTKKVEDCCQGAGVVVPP 86
T+ N +DM+TK LP K E CC +G+ P
Sbjct: 1153 TNDNGADMLTKVLPRGKFEACCLTSGMEAFP 1183
>ref|XP_013746494.2| uncharacterized protein BNAC09G10640D [Brassica napus]
Length = 1347
Score = 1172 bits (3032), Expect = 0.0
Identities = 616/1214 (50%), Positives = 790/1214 (65%), Gaps = 10/1214 (0%)
Frame = -2
Query: 3703 KGIVNQLTKADMKIDDELQTXXXXXXLPESWDTLVVTLSNSTPGGKLSLDTITDSLLNEE 3524
+G++N+L+ +K DDE+ LP+SW+ ++L NS G +S+D++ +S+LNEE
Sbjct: 212 QGLLNKLSDMGIKFDDEIHGLWLLGTLPDSWEVFRMSLCNSASEGVISMDSVKNSVLNEE 271
Query: 3523 SRRKERGMSSHSEANVVENXXXXXXXXXXXXXXXXXXXXXXXXGLTCFYCGKDGHKKPEC 3344
+RR+ SS S+ V E+ + C++C K GH K +C
Sbjct: 272 ARRQSNASSSRSDVFVTESRGRSTSRDPKRDKDRSRSKSNRFANMECYFCHKKGHMKKDC 331
Query: 3343 RFLKRDQKAGTVHPDVIDPKKKLEEKTTTAVASDDENVFLVSEVNYLNVVFDDCTWIVDT 3164
LK Q+ EEK ++D+ + L+ E + +NV D +W++D+
Sbjct: 332 WKLKNKQQGNQ------------EEKVDRVTLTEDQFLILL-EGDAINVACQDTSWVIDS 378
Query: 3163 GASFHVTPHEGFFSSYQKGDFGKVKMGNHVTSKIVGIGEVILLTENGNKLVLKEVRHVPE 2984
GA+ HV GIG+V L T G +LVLK+V+HVP+
Sbjct: 379 GATTHVA----------------------------GIGDVCLETSLGTRLVLKDVKHVPD 410
Query: 2983 MRLNLISAGKLDDAGMNNQFGGGKWKLSRGSMVVARGRKEGSLYITHGKLCKGEIN-VAQ 2807
+R+NLIS G+LDD G + GGGKWKLSRGS++VARG K S Y K+ K +N V
Sbjct: 411 IRMNLISTGRLDDEGYFSLHGGGKWKLSRGSLIVARGEKSSSFYWMQAKVSKDVVNAVEN 470
Query: 2806 EESKELWHKRLGHMSEKGLEILAKDH-LQSIKGQPLESCEDCLAGKQRRVSFQRSDNGRR 2630
+ + ELWHKRLGHMSEKG+ +L+K+ + I G L+ C C AGKQ RVSF +S R
Sbjct: 471 DNAMELWHKRLGHMSEKGMVVLSKNEVIPGISGLHLQKCSHCFAGKQHRVSF-KSSAPSR 529
Query: 2629 RKHILDLVHSDVCSTSE-RSLGGAQYFVTFIDDHSRKLWVYLLKRKDEVLRAFKEFHVSV 2453
+ +LDLVHSDVC + RSLGGA Y+VTFIDDHSRK WV+ ++ KD+VL FK F V
Sbjct: 530 KPEVLDLVHSDVCGPMKTRSLGGASYYVTFIDDHSRKSWVFPMRTKDQVLGYFKHFVALV 589
Query: 2452 ERETGKKLKCLRSDNGGEYRGPFEHYCKTHGIRHEKVPPKTPQMNGVAERFNRTIAEKVR 2273
ER+TGKKLKC+RSDNGGEY GPF+ YCK HGIRH+ PP TPQ+NG+AER NRTI E++R
Sbjct: 590 ERQTGKKLKCIRSDNGGEYLGPFDAYCKEHGIRHQFTPPHTPQLNGLAERMNRTIVERMR 649
Query: 2272 SMLSHAKLPKSFWGEAVATAVDLINLSPSRPLNGKIPEEVWTGKKASYRNLRVFGCKASV 2093
++S + L +FW EA+ T V ++NLSPS PL+G +PE VWTGK SY +LRVFGCKA V
Sbjct: 650 CLISQSGLSMTFWAEALNTVVHVLNLSPSAPLDGDVPERVWTGKDVSYSHLRVFGCKAFV 709
Query: 2092 HIPKDERAKLDAKAKECVYLGSPRDELGFRLWDPANRKIVRSRDVVFFEDQTIQDIKKME 1913
HIPK RK+VRSRDVVF EDQTI+DI K +
Sbjct: 710 HIPK--------------------------------RKLVRSRDVVFMEDQTIKDIDKSK 737
Query: 1912 KPKLKVSYDQSPLVVNKSGGETPQTEPDQDIQLXXXXXXXXXXXXXXXXXXXQSGEDVQH 1733
KP + L+ ++ TP T ++++ G+D
Sbjct: 738 KP----TQIFEGLIDTEA---TPSTSVHGEVEVEVQDNTPSADAPAHEDGSGDHGDDHGE 790
Query: 1732 EPQ-------VXXXXXXXXXXXRYFSDEYINLTDEGEPQSFAEAIEMEEKDKWLQAMEEE 1574
P V RY EY+ LTD GEP+S+ EA+E E KDKW AM+EE
Sbjct: 791 TPAAENQPTIVRRSERGLKPSTRYDPSEYVLLTDGGEPESYDEALEDEHKDKWFGAMDEE 850
Query: 1573 IQSLKENQTYDLVELPKGRKALRNKWVFKLKNEENNPNPRYKARIVVKGCNQKKGIDFDE 1394
+ S +EN T++LVELPKG+KAL NKWV+++K+E++N PR+KAR+VVKG +QKKGID+DE
Sbjct: 851 MDSFEENHTFELVELPKGKKALLNKWVYRIKHEDDNLPPRHKARLVVKGYSQKKGIDYDE 910
Query: 1393 IFSPVVKMTSIRAILGLAAKLDLEIEQLDVKTAFLHGDLEEEIYMEQPEGFEEPGKEHLV 1214
IFSPVVKM+SIR +LGLAA LDLE+EQ+DVKTAFLHGDLEEEIYMEQPEG+ + GKE+LV
Sbjct: 911 IFSPVVKMSSIRVVLGLAASLDLEVEQMDVKTAFLHGDLEEEIYMEQPEGYVQKGKENLV 970
Query: 1213 CRLKKSLYGLKQAPRQWYKKFDSFMTQHNFKKTSADHCVFVKNYENGESIILLLYVDDML 1034
CRLKKSLYGLKQAPRQWY KF S M +H + +T +DHCVFVK + + IILLLYVDDML
Sbjct: 971 CRLKKSLYGLKQAPRQWYMKFKSVMGEHGYAETDSDHCVFVKVFGEDDFIILLLYVDDML 1030
Query: 1033 IVGKDXXXXXXXXXXXXXSFAMKDLGAVKRILGMKITRDRSKRMLWVSQEDYIEKVLKRF 854
IVG++ SFAMKD+G K+ILGM+I RDR ++++ +SQE YIEKVLKRF
Sbjct: 1031 IVGRNMDRIKELKEQLSESFAMKDMGPAKQILGMRIIRDRGEKLIHLSQEKYIEKVLKRF 1090
Query: 853 NMHNAKPARVPLAGHFKLSKSQCPXXXXXXXXXXKVPYSSAVGSLMYAMVCTRPDIGYAV 674
+M +K PLA H +LS Q P KVPY+SAVGSLMYAMVCTRPD+ YAV
Sbjct: 1091 HMDKSKVLSTPLAPHLRLSSQQSPKTYAEKEDMAKVPYASAVGSLMYAMVCTRPDLAYAV 1150
Query: 673 GIVSRFLSNPGKEHWEAVKWILRYLRGTAKRSLCFGNGDQMLIGYSDSDMAGDVDSRKST 494
G+VSRFLSNPG+EHW AVKWILRYLRGT+ + FG +L+ Y+DSDM+GD DS KST
Sbjct: 1151 GVVSRFLSNPGREHWNAVKWILRYLRGTSNLKITFGGKKPLLVSYTDSDMSGDADSSKST 1210
Query: 493 SGYLITFAGGAVSWQSKLQKCVTLSTAEAEYVAVTETSKEMLWMKNFLIELGHDQVDYVV 314
SGYL+TFAGGAV+WQS+LQKCV LST EAE++A E KE+LWMKNF E+G Q YV+
Sbjct: 1211 SGYLVTFAGGAVAWQSRLQKCVALSTTEAEFIAAVEACKELLWMKNFCEEIGFKQEKYVL 1270
Query: 313 NCDNQSTIHLAKNPMFHSRSKHIDIRYHWIREALDEKRLKIEKIHTDLNWSDMMTKSLPT 134
CD+QS I L KN FHS+SKHI RYHWIR+ + K +++EK+HTD N +DMMTKSLP
Sbjct: 1271 LCDSQSAICLGKNSTFHSKSKHIQRRYHWIRDVVASKEVELEKVHTDDNGADMMTKSLPR 1330
Query: 133 KKVEDCCQGAGVVV 92
K+E C + AG+ V
Sbjct: 1331 GKLEVCREIAGMAV 1344
>ref|XP_022549646.1| uncharacterized protein LOC111201676, partial [Brassica napus]
Length = 2325
Score = 1172 bits (3032), Expect = 0.0
Identities = 625/1264 (49%), Positives = 808/1264 (63%), Gaps = 23/1264 (1%)
Frame = -2
Query: 3808 MIQKKTPRNKAHLVRRLVKLEY-------------SDGQNMIEHLNTFKGIVNQLTKADM 3668
M+ K PR K + L E+ +D + ++H +G++N+L+ +
Sbjct: 1145 MMTKSLPRGKLEMEDLLFVKEFHVPVFEEQKPEKKTDEEWKLQHR---QGLLNKLSDMGI 1201
Query: 3667 KIDDELQTXXXXXXLPESWDTLVVTLSNSTPGGKLSLDTITDSLLNEESRRKERGMSSHS 3488
K DDE+ LP+SW+ ++L NS G +S+D++ +S+LNEE+RR+ SS S
Sbjct: 1202 KFDDEIHGLWLLGTLPDSWEVFRMSLCNSASEGVISMDSVKNSVLNEEARRQSNASSSRS 1261
Query: 3487 EANVVENXXXXXXXXXXXXXXXXXXXXXXXXGLTCFYCGKDGHKKPECRFLKRDQKAGTV 3308
+ V E+ + C++C K GH K +C LK Q+
Sbjct: 1262 DVFVTESRGRSTSRDPKRDKNRSRSKSNRFANMECYFCHKKGHMKKDCWKLKNKQQGNQ- 1320
Query: 3307 HPDVIDPKKKLEEKTTTAVASDDENVFLVSEVNYLNVVFDDCTWIVDTGASFHVTPHEGF 3128
EEK ++D+ + L+ E + +NV D +W++D+GA+ HV
Sbjct: 1321 -----------EEKVDRVTLTEDQFLILL-EGDAINVACQDTSWVIDSGATTHVA----- 1363
Query: 3127 FSSYQKGDFGKVKMGNHVTSKIVGIGEVILLTENGNKLVLKEVRHVPEMRLNLISAGKLD 2948
GIG+V L T G +LVLK+V+HVP++R+NLIS G+LD
Sbjct: 1364 -----------------------GIGDVCLETSLGTRLVLKDVKHVPDIRMNLISTGRLD 1400
Query: 2947 DAGMNNQFGGGKWKLSRGSMVVARGRKEGSLYITHGKLCKGEIN-VAQEESKELWHKRLG 2771
D G + GGGKWKLSRGS++VARG K S Y K+ K +N V + + ELWHKRLG
Sbjct: 1401 DEGYFSLHGGGKWKLSRGSLIVARGEKSSSFYWMQAKVSKDVVNAVENDNAMELWHKRLG 1460
Query: 2770 HMSEKGLEILAKDH-LQSIKGQPLESCEDCLAGKQRRVSFQRSDNGRRRKHILDLVHSDV 2594
HMSEKG+ +L+K+ + I G L+ C C AGKQ RVSF +S R+ +LDLVHSDV
Sbjct: 1461 HMSEKGMVVLSKNEVIPGISGLHLQKCSHCFAGKQHRVSF-KSSAPSRKPEVLDLVHSDV 1519
Query: 2593 CSTSE-RSLGGAQYFVTFIDDHSRKLWVYLLKRKDEVLRAFKEFHVSVERETGKKLKCLR 2417
C + RSLGGA Y+VTFIDDHSRK WV+ ++ KD+VL FK F VER+TGKKLKC+R
Sbjct: 1520 CGPMKTRSLGGASYYVTFIDDHSRKSWVFPMRTKDQVLGYFKHFVALVERQTGKKLKCIR 1579
Query: 2416 SDNGGEYRGPFEHYCKTHGIRHEKVPPKTPQMNGVAERFNRTIAEKVRSMLSHAKLPKSF 2237
SDNGGEY GPF+ YCK HGIRH+ PP TPQ+NG+AER NRTI E++R ++S + L +F
Sbjct: 1580 SDNGGEYLGPFDAYCKEHGIRHQFTPPHTPQLNGLAERMNRTIVERMRCLISQSGLSMTF 1639
Query: 2236 WGEAVATAVDLINLSPSRPLNGKIPEEVWTGKKASYRNLRVFGCKASVHIPKDERAKLDA 2057
W EA+ T V ++NLSPS PL+G +PE VWTGK SY +LRVFGCKA VHIPK
Sbjct: 1640 WAEALNTVVHVLNLSPSAPLDGDVPERVWTGKDVSYSHLRVFGCKAFVHIPK-------- 1691
Query: 2056 KAKECVYLGSPRDELGFRLWDPANRKIVRSRDVVFFEDQTIQDIKKMEKPKLKVSYDQSP 1877
RK+VRSRDVVF EDQTI+DI K +KP +
Sbjct: 1692 ------------------------RKLVRSRDVVFMEDQTIKDIDKSKKP----TQIFEG 1723
Query: 1876 LVVNKSGGETPQTEPDQDIQLXXXXXXXXXXXXXXXXXXXQSGEDVQHEPQ-------VX 1718
L+ ++ TP T ++++ G+D P V
Sbjct: 1724 LIDTEA---TPSTSVHGEVEVEVQDNTPSADAPAHEDGSGDHGDDHGETPAAENQPTIVR 1780
Query: 1717 XXXXXXXXXXRYFSDEYINLTDEGEPQSFAEAIEMEEKDKWLQAMEEEIQSLKENQTYDL 1538
RY EY+ LTD GEP+S+ EA+E E KDKW AM+EE+ S +EN T++L
Sbjct: 1781 RSERGLKPSTRYDPSEYVLLTDGGEPESYDEALEDEHKDKWFGAMDEEMDSFEENHTFEL 1840
Query: 1537 VELPKGRKALRNKWVFKLKNEENNPNPRYKARIVVKGCNQKKGIDFDEIFSPVVKMTSIR 1358
VELPKG+KAL NKWV+++K+E++N PR+KAR+VVKG +QKKGID+DEIFSPVVKM+SIR
Sbjct: 1841 VELPKGKKALLNKWVYRIKHEDDNLPPRHKARLVVKGYSQKKGIDYDEIFSPVVKMSSIR 1900
Query: 1357 AILGLAAKLDLEIEQLDVKTAFLHGDLEEEIYMEQPEGFEEPGKEHLVCRLKKSLYGLKQ 1178
+LGLAA LDLE+EQ+DVKTAFLHG+LEEEIYMEQPEG+ + GKE+LVCRLKKSLYGLKQ
Sbjct: 1901 VVLGLAASLDLEVEQMDVKTAFLHGNLEEEIYMEQPEGYVQKGKENLVCRLKKSLYGLKQ 1960
Query: 1177 APRQWYKKFDSFMTQHNFKKTSADHCVFVKNYENGESIILLLYVDDMLIVGKDXXXXXXX 998
APRQWY KF S M +H + +T +DHCVFVK + + IILLLYVDDMLIVG++
Sbjct: 1961 APRQWYMKFKSVMGEHGYAETDSDHCVFVKVFGEDDFIILLLYVDDMLIVGRNMDKIKEL 2020
Query: 997 XXXXXXSFAMKDLGAVKRILGMKITRDRSKRMLWVSQEDYIEKVLKRFNMHNAKPARVPL 818
SFAMKD+G K+ILGM+I RDR ++++ +SQE YIEKVLKRF+M +K PL
Sbjct: 2021 KEQLSESFAMKDMGPAKQILGMRIIRDRGEKLIHLSQEKYIEKVLKRFHMDKSKVLSTPL 2080
Query: 817 AGHFKLSKSQCPXXXXXXXXXXKVPYSSAVGSLMYAMVCTRPDIGYAVGIVSRFLSNPGK 638
A H +LS Q P KVPY+SAVGSLMYAMVCTRPD+ YAVG+VSRF+SNPG+
Sbjct: 2081 APHLRLSSQQSPKTYAEKEDMAKVPYASAVGSLMYAMVCTRPDLAYAVGVVSRFISNPGR 2140
Query: 637 EHWEAVKWILRYLRGTAKRSLCFGNGDQMLIGYSDSDMAGDVDSRKSTSGYLITFAGGAV 458
EHW AVKWILRYLRGT+ + FG +L+ ++DSDM+GDVDS KSTSGYL+TFAGGAV
Sbjct: 2141 EHWNAVKWILRYLRGTSDLKITFGGKKPLLVSFTDSDMSGDVDSSKSTSGYLVTFAGGAV 2200
Query: 457 SWQSKLQKCVTLSTAEAEYVAVTETSKEMLWMKNFLIELGHDQVDYVVNCDNQSTIHLAK 278
+WQS+LQKCV LST EAE++A TE KE+LWMKNF E+G Q YV+ CD+QS I L K
Sbjct: 2201 AWQSRLQKCVALSTTEAEFIATTEACKELLWMKNFYEEIGFKQEKYVLLCDSQSAICLGK 2260
Query: 277 NPMFHSRSKHIDIRYHWIREALDEKRLKIEKIHTDLNWSDMMTKSLPTKKVEDCCQGAGV 98
N FHS+SKHI RYHWIR+ + K +++EK+HTD N +DMMTKSLP K+E C AG+
Sbjct: 2261 NSTFHSKSKHIQRRYHWIRDVVASKEVELEKVHTDDNRADMMTKSLPRGKLEVCRVIAGM 2320
Query: 97 VVPP 86
V P
Sbjct: 2321 AVSP 2324
Score = 1164 bits (3011), Expect = 0.0
Identities = 611/1204 (50%), Positives = 784/1204 (65%), Gaps = 10/1204 (0%)
Frame = -2
Query: 3703 KGIVNQLTKADMKIDDELQTXXXXXXLPESWDTLVVTLSNSTPGGKLSLDTITDSLLNEE 3524
+G++N+L+ +K DDE+ LP+SW+ ++L NS G +S+D++ +S+LNEE
Sbjct: 34 QGLLNKLSDMGIKFDDEIHGLWLLGTLPDSWEVFRMSLCNSASEGVISMDSVKNSVLNEE 93
Query: 3523 SRRKERGMSSHSEANVVENXXXXXXXXXXXXXXXXXXXXXXXXGLTCFYCGKDGHKKPEC 3344
+RR+ SS S+ V E+ + C++C K GH K +C
Sbjct: 94 ARRQSNASSSRSDVFVTESRGRSTSRDPKRDKNRSRSKSNRFANMECYFCHKKGHMKKDC 153
Query: 3343 RFLKRDQKAGTVHPDVIDPKKKLEEKTTTAVASDDENVFLVSEVNYLNVVFDDCTWIVDT 3164
LK Q+ EEK ++D+ + L+ E + +NV D +W++D+
Sbjct: 154 WKLKNKQQGNQ------------EEKVDRVTLTEDQFLILL-EGDAINVACQDTSWVIDS 200
Query: 3163 GASFHVTPHEGFFSSYQKGDFGKVKMGNHVTSKIVGIGEVILLTENGNKLVLKEVRHVPE 2984
GA+ HV GIG+V L T G +LVLK+V+HVP+
Sbjct: 201 GATTHVA----------------------------GIGDVCLETSLGTRLVLKDVKHVPD 232
Query: 2983 MRLNLISAGKLDDAGMNNQFGGGKWKLSRGSMVVARGRKEGSLYITHGKLCKGEIN-VAQ 2807
+R+NLIS G+LDD G + GGGKWKLSRGS++VARG K S Y K+ K +N V
Sbjct: 233 IRMNLISTGRLDDEGYFSLHGGGKWKLSRGSLIVARGEKSSSFYWMQAKVSKDVVNAVEN 292
Query: 2806 EESKELWHKRLGHMSEKGLEILAKDH-LQSIKGQPLESCEDCLAGKQRRVSFQRSDNGRR 2630
+ + ELWHKRLGHMSEKG+ +L+K+ + I G L+ C C AGKQ RVSF +S R
Sbjct: 293 DNAMELWHKRLGHMSEKGMVVLSKNEVIPGISGLHLQKCSHCFAGKQHRVSF-KSSAPSR 351
Query: 2629 RKHILDLVHSDVCSTSE-RSLGGAQYFVTFIDDHSRKLWVYLLKRKDEVLRAFKEFHVSV 2453
+ +LDLVHSDVC + RSLGGA Y+VTFIDDHSRK WV+ ++ KD+VL FK F V
Sbjct: 352 KPEVLDLVHSDVCGPMKTRSLGGASYYVTFIDDHSRKSWVFPMRTKDQVLGYFKHFVALV 411
Query: 2452 ERETGKKLKCLRSDNGGEYRGPFEHYCKTHGIRHEKVPPKTPQMNGVAERFNRTIAEKVR 2273
ER+TGKKLKC+RSDNGGEY GPF+ YCK HGIRH+ PP TPQ+NG+AER NRTI E++R
Sbjct: 412 ERQTGKKLKCIRSDNGGEYLGPFDAYCKEHGIRHQFTPPHTPQLNGLAERMNRTIVERMR 471
Query: 2272 SMLSHAKLPKSFWGEAVATAVDLINLSPSRPLNGKIPEEVWTGKKASYRNLRVFGCKASV 2093
++S + L +FW EA+ T V ++NLSPS PL+G +PE VWTGK SY +LRVFGCKA V
Sbjct: 472 CLISQSGLSMTFWAEALNTVVHVLNLSPSAPLDGDVPERVWTGKDVSYSHLRVFGCKAFV 531
Query: 2092 HIPKDERAKLDAKAKECVYLGSPRDELGFRLWDPANRKIVRSRDVVFFEDQTIQDIKKME 1913
HIPK RK+VRSRDVVF EDQTI+DI K +
Sbjct: 532 HIPK--------------------------------RKLVRSRDVVFMEDQTIKDIDKSK 559
Query: 1912 KPKLKVSYDQSPLVVNKSGGETPQTEPDQDIQLXXXXXXXXXXXXXXXXXXXQSGEDVQH 1733
KP + L+ ++ TP T ++++ G+D
Sbjct: 560 KP----TQIFEGLIDTEA---TPSTSVHGEVEVEVQDNTPSADAPAHEDGSGDHGDDHGE 612
Query: 1732 EPQ-------VXXXXXXXXXXXRYFSDEYINLTDEGEPQSFAEAIEMEEKDKWLQAMEEE 1574
P V RY EY+ LTD GEP+S+ EA+E E KDKW AM+EE
Sbjct: 613 TPAAENQPTIVRRSERGLKPSTRYDPSEYVLLTDGGEPESYDEALEDEHKDKWFGAMDEE 672
Query: 1573 IQSLKENQTYDLVELPKGRKALRNKWVFKLKNEENNPNPRYKARIVVKGCNQKKGIDFDE 1394
+ S +EN T++LVELPKG+KAL NKWV+++K+E++N PR+KAR+VVKG +QKKGID+DE
Sbjct: 673 MDSFEENHTFELVELPKGKKALLNKWVYRIKHEDDNLPPRHKARLVVKGYSQKKGIDYDE 732
Query: 1393 IFSPVVKMTSIRAILGLAAKLDLEIEQLDVKTAFLHGDLEEEIYMEQPEGFEEPGKEHLV 1214
IFSPVVKM+SIR +LGLAA LDLE+EQ+DVKTAFLHG+LEEEIYMEQPEG+ + GKE+LV
Sbjct: 733 IFSPVVKMSSIRVVLGLAASLDLEVEQMDVKTAFLHGNLEEEIYMEQPEGYVQKGKENLV 792
Query: 1213 CRLKKSLYGLKQAPRQWYKKFDSFMTQHNFKKTSADHCVFVKNYENGESIILLLYVDDML 1034
CRLKKSLYGLKQAPRQWY KF S M +H + +T +DHCVFVK + + IILLLYVDDML
Sbjct: 793 CRLKKSLYGLKQAPRQWYMKFKSVMGEHGYAETDSDHCVFVKVFGEDDFIILLLYVDDML 852
Query: 1033 IVGKDXXXXXXXXXXXXXSFAMKDLGAVKRILGMKITRDRSKRMLWVSQEDYIEKVLKRF 854
IVG++ SFAMKD+G K+ILGM+I RDR ++++ +SQE YIEKVLKRF
Sbjct: 853 IVGRNMDKIKELKEQLSESFAMKDMGPAKQILGMRIIRDRGEKLIHLSQEKYIEKVLKRF 912
Query: 853 NMHNAKPARVPLAGHFKLSKSQCPXXXXXXXXXXKVPYSSAVGSLMYAMVCTRPDIGYAV 674
+M +K PLA H +LS Q P KVPY+SAVGSLMYAMVCTRPD+ YAV
Sbjct: 913 HMDKSKVLSTPLAPHLRLSSQQSPKTYAEKEDMAKVPYASAVGSLMYAMVCTRPDLAYAV 972
Query: 673 GIVSRFLSNPGKEHWEAVKWILRYLRGTAKRSLCFGNGDQMLIGYSDSDMAGDVDSRKST 494
G+VSRFLSNPG+EHW AVKWILRYLRGT+ + FG +L+ Y+DSDM+GD DS KST
Sbjct: 973 GVVSRFLSNPGREHWNAVKWILRYLRGTSDLKITFGGKKSLLVSYTDSDMSGDADSSKST 1032
Query: 493 SGYLITFAGGAVSWQSKLQKCVTLSTAEAEYVAVTETSKEMLWMKNFLIELGHDQVDYVV 314
SGYL+TFAGGAV+WQS+LQKCV LST EAE++A E KE+LWMKNF E+G Q YV+
Sbjct: 1033 SGYLVTFAGGAVAWQSRLQKCVALSTTEAEFIAAVEACKELLWMKNFCEEIGFKQEKYVL 1092
Query: 313 NCDNQSTIHLAKNPMFHSRSKHIDIRYHWIREALDEKRLKIEKIHTDLNWSDMMTKSLPT 134
CD+QS I L KN FHS+SKHI RYHWIR+ + K +++EK+HTD N +DMMTKSLP
Sbjct: 1093 LCDSQSAICLGKNSTFHSKSKHIQRRYHWIRDVVASKEVELEKVHTDDNGADMMTKSLPR 1152
Query: 133 KKVE 122
K+E
Sbjct: 1153 GKLE 1156
>gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris]
Length = 1556
Score = 1167 bits (3020), Expect = 0.0
Identities = 619/1226 (50%), Positives = 794/1226 (64%), Gaps = 12/1226 (0%)
Frame = -2
Query: 3742 SDGQNMIEHLNTFKGIVNQLTKADMKIDDELQTXXXXXXLPESWDTLVVTLSNSTPGGKL 3563
+D + EH F+ +QL++ +K DDE+ LP+SW+T V+++NS+P G +
Sbjct: 134 TDEEWKFEHQQGFR---DQLSQMGIKFDDEVLGLWLLNTLPDSWETFRVSITNSSPDGVV 190
Query: 3562 SLDTITDSLLNEESRRKERGMSSHSEANVVENXXXXXXXXXXXXXXXXXXXXXXXXG-LT 3386
SL+ + S+LNEE RRK G SSHSE EN +
Sbjct: 191 SLENVKSSVLNEEMRRKAHGTSSHSEVLFTENRGRSQKKELKGSKQNSRSKSKSRYKNVE 250
Query: 3385 CFYCGKDGHKKPECRFLKRDQKAGTVHPDVIDPKKKLEEK-------TTTAVASDDENVF 3227
C YC K GH + C K++ K D K K +EK TTA++ DD +
Sbjct: 251 CHYCHKTGHIQRNCFLWKKENK---------DKKGKQKEKHHDNDDRVTTAISDDD--LI 299
Query: 3226 LVSEVNYLNVVFDDCTWIVDTGASFHVTPHEGFFSSYQKGDFGKVKMGNHVTSKIVGIGE 3047
++ + + +N+V D+ WI+D+G + HV +GI +
Sbjct: 300 ILRDHDSVNLVSDESMWIIDSGVTLHV----------------------------IGIAD 331
Query: 3046 VILLTENGNKLVLKEVRHVPEMRLNLISAGKLDDAGMNNQFGGGKWKLSRGSMVVARGRK 2867
V L T G +L+L+ V+H P++R NL+S LDD+G N FG GKWKLSRG+++VA+G +
Sbjct: 332 VCLQTNMGMQLLLRGVKHAPDVRFNLLSVQMLDDSGFENHFGLGKWKLSRGNLIVAKGDR 391
Query: 2866 EGSLYITHGKLCKGEINVAQEESKELWHKRLGHMSEKGLEILAK-DHLQSIKGQPLESCE 2690
LY T + K +N A + LWH+RL H+SEKGL LAK D L +K LE C
Sbjct: 392 ISKLYWTKALVAKDSVN-AMDMDASLWHRRLSHISEKGLNCLAKKDVLSGLKNAELEKCS 450
Query: 2689 DCLAGKQRRVSFQRSDNGRRRKHILDLVHSDVCSTSE-RSLGGAQYFVTFIDDHSRKLWV 2513
C+AGKQ RVSF++ ++ + +L+LVHSDVC + +S G YFVTFIDD SRKLWV
Sbjct: 451 HCMAGKQTRVSFKKHPPSKKSE-LLELVHSDVCGPLKVKSFTGTIYFVTFIDDCSRKLWV 509
Query: 2512 YLLKRKDEVLRAFKEFHVSVERETGKKLKCLRSDNGGEYRGPFEHYCKTHGIRHEKVPPK 2333
Y LK KD+VL FKEFHV VER++GKKLKC+R+DNGGEY GPF+ YCK HGIRHEK PPK
Sbjct: 510 YALKTKDQVLAKFKEFHVLVERQSGKKLKCIRTDNGGEYCGPFDAYCKQHGIRHEKTPPK 569
Query: 2332 TPQMNGVAERFNRTIAEKVRSMLSHAKLPKSFWGEAVATAVDLINLSPSRPLNGKIPEEV 2153
TPQ+NG+AER NRT+ E+VR MLS AKLPK FWGEA+ TAV +INLSP+ LN ++P++V
Sbjct: 570 TPQLNGLAERMNRTLIERVRCMLSKAKLPKHFWGEALYTAVHVINLSPAIALNAEVPDKV 629
Query: 2152 WTGKKASYRNLRVFGCKASVHIPKDERAKLDAKAKECVYLGSPRDELGFRLWDPANRKIV 1973
W GK Y +LRVFGCKA VH +K V
Sbjct: 630 WFGKNVKYDHLRVFGCKAYVH-----------------------------------KKAV 654
Query: 1972 RSRDVVFFEDQTIQDIKKMEKPKLKVSYDQSPLVVNKSGGETPQTEPDQDIQLXXXXXXX 1793
RSRDV F EDQTI+DI K EK ++ + + N + + D D Q
Sbjct: 655 RSRDVKFMEDQTIEDIDKTEK----ITSETDNRLSNVDPVLSDEQHDDVDDQQLGDAFDV 710
Query: 1792 XXXXXXXXXXXXQSGE--DVQHEPQVXXXXXXXXXXXRYFSDEYINLTDEGEPQSFAEAI 1619
Q + D PQV Y SD+Y+ LTDEGEP+ + EA+
Sbjct: 711 PIDDSEEEHGMSQDEDLGDAPEPPQVQIRR--------YPSDDYVTLTDEGEPECYLEAM 762
Query: 1618 EMEEKDKWLQAMEEEIQSLKENQTYDLVELPKGRKALRNKWVFKLKNEENNPNPRYKARI 1439
E EEK KWL AM++E++SL +N T+DLV+LPK +KAL N+W++++K E N+ +PRYKAR+
Sbjct: 763 ESEEKKKWLDAMQDEMKSLHDNHTFDLVKLPKDKKALENRWIYRVKQESNSTSPRYKARL 822
Query: 1438 VVKGCNQKKGIDFDEIFSPVVKMTSIRAILGLAAKLDLEIEQLDVKTAFLHGDLEEEIYM 1259
VVKG Q+KGIDF+EIFSPVVKM+SIR +L LAA LDLE+EQ+DVKTAFLHGDLEEEIYM
Sbjct: 823 VVKGFRQRKGIDFNEIFSPVVKMSSIRIVLSLAATLDLEVEQMDVKTAFLHGDLEEEIYM 882
Query: 1258 EQPEGFEEPGKEHLVCRLKKSLYGLKQAPRQWYKKFDSFMTQHNFKKTSADHCVFVKNYE 1079
+QP+GF GKE VCRL+KSLYGLKQAPRQWYKKF+S M + +KKT++DHCVFVK +
Sbjct: 883 KQPDGFLVEGKEDHVCRLRKSLYGLKQAPRQWYKKFESVMCEQGYKKTTSDHCVFVKKFA 942
Query: 1078 NGESIILLLYVDDMLIVGKDXXXXXXXXXXXXXSFAMKDLGAVKRILGMKITRDRSKRML 899
N + IILLLYVDD+LIVGKD SFAMKD+GA K+ILG++I RDR ++ L
Sbjct: 943 NDDFIILLLYVDDILIVGKDISMINRLKKQLSESFAMKDMGAAKQILGIRIMRDRQEKKL 1002
Query: 898 WVSQEDYIEKVLKRFNMHNAKPARVPLAGHFKLSKSQCPXXXXXXXXXXKVPYSSAVGSL 719
W+SQE+Y+++VL+RF M NAK PLA HFKLS Q P ++PY+SAVGSL
Sbjct: 1003 WLSQENYVKRVLQRFQMENAKVVSTPLATHFKLSTKQSPSYEYEKSDMQRIPYASAVGSL 1062
Query: 718 MYAMVCTRPDIGYAVGIVSRFLSNPGKEHWEAVKWILRYLRGTAKRSLCFGNGDQMLIGY 539
MYAMVCTRPDI + VG VSRF+SNPG+EHW AVKWILRYLRGT LCFG L+GY
Sbjct: 1063 MYAMVCTRPDIAHVVGTVSRFMSNPGREHWNAVKWILRYLRGTTCLRLCFGGDKPTLVGY 1122
Query: 538 SDSDMAGDVDSRKSTSGYLITFAGGAVSWQSKLQKCVTLSTAEAEYVAVTETSKEMLWMK 359
+DSDM GD+DSR+STSGY+I FAGGAV+WQS+LQKCV LST EAE++A+TE KE+LW+K
Sbjct: 1123 TDSDMGGDIDSRRSTSGYVIKFAGGAVAWQSRLQKCVALSTTEAEFIAITEACKELLWVK 1182
Query: 358 NFLIELGHDQVDYVVNCDNQSTIHLAKNPMFHSRSKHIDIRYHWIREALDEKRLKIEKIH 179
L EL Q Y++ CD+QS I+L KN FHSRSKHID+RYHWIR+AL+ + L++ K+H
Sbjct: 1183 KLLQELSFVQDKYLLFCDSQSAIYLGKNSTFHSRSKHIDVRYHWIRDALEARLLELAKVH 1242
Query: 178 TDLNWSDMMTKSLPTKKVEDCCQGAG 101
TD N +DMMTKSLP K E CC+ AG
Sbjct: 1243 TDDNCADMMTKSLPRSKSETCCKIAG 1268
>gb|KYP40337.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1269
Score = 1135 bits (2936), Expect = 0.0
Identities = 613/1314 (46%), Positives = 818/1314 (62%), Gaps = 11/1314 (0%)
Frame = -2
Query: 4006 MEDHLYCKDLYEPITNEDMPEGKTEKEWEVLNRKAVAMIRKYIDKSLFEHVSTYTNAYEL 3827
+ED+LY K L+EP+T + PE E EW L+RKA+ IR + +++ +++ L
Sbjct: 3 IEDYLYQKGLHEPLTGKK-PEAMKEDEWSFLDRKALGAIRLTLSRNVAFNIAKEKTTASL 61
Query: 3826 WTKLESMIQKKTPRNKAHLVRRLVKLEYSDGQNMIEHLNTFKGIVNQLTKADMKIDDELQ 3647
L SM +K + NK HL+RRL L ++G + +H+N I QL+ + D+E++
Sbjct: 62 MAALSSMYEKPSAANKVHLIRRLFNLRMTEGASTAQHINELNTITIQLSSVGINFDEEVR 121
Query: 3646 TXXXXXXLPESWDTLVVTLSNSTPGGKLSLDTITDSLLNEESRRKERGMSSHSEANVVEN 3467
LPESW+ V +S+S+ KL D + D +L+EE RR+E G S+ S E+
Sbjct: 122 ALILLSSLPESWNATVTAVSSSSGSNKLKFDDVRDLVLSEEVRRRETGESTTSSVLHTES 181
Query: 3466 XXXXXXXXXXXXXXXXXXXXXXXXG------LTCFYCGKDGHKKPECRFLKRDQKAGTVH 3305
+ C+ CGK GH K +CR +
Sbjct: 182 RGRSSTRGTGRGKSKERSKSRNHQSSNKSKTIECWNCGKTGHYKNQCRSASK-------- 233
Query: 3304 PDVIDPKKKLEEKTTTAVASDDENVFLVSEVNYLNVVFDDCTWIVDTGASFHVTPHEGFF 3125
K++++++ A S + + S N + +W++D+GASFH T + F
Sbjct: 234 ------KQEVKDEANVATTSGGGDALICSLEN------KEESWVIDSGASFHATSQKELF 281
Query: 3124 SSYQKGDFGKVKMGNHVTSKIVGIGEVILLTENGNKLVLKEVRHVPEMRLNLISAGKLDD 2945
+Y G+ GKV +GN + +IVG G V+ + NG+ LK VRH+P++ NLIS G+L
Sbjct: 282 ENYVSGNLGKVYLGNEQSCEIVGKG-VVKIKLNGSVWELKNVRHIPDLTKNLISVGQLAS 340
Query: 2944 AGMNNQFGGGKWKLSRGSMVVARGRKEGSLYITHGKLCKGEINVAQEESKELWHKRLGHM 2765
G F G +WK+S+G+M +ARG+K G+LY T + C I VA ++ LWH+RLGHM
Sbjct: 341 DGYTTIFQGEQWKISKGAMTIARGKKSGTLYKTT-EACH-LITVAANDNPNLWHQRLGHM 398
Query: 2764 SEKGLEIL-AKDHLQSIKGQPLESCEDCLAGKQRRVSFQRSDNGRR-RKHILDLVHSDVC 2591
SEKG++I+ +K L ++ +E CEDC+ GKQ+RVSFQ+ GR +K L+LVHSDV
Sbjct: 399 SEKGMKIMHSKGKLPGLQSMEIEMCEDCIFGKQKRVSFQKG--GRTPKKERLELVHSDVW 456
Query: 2590 S-TSERSLGGAQYFVTFIDDHSRKLWVYLLKRKDEVLRAFKEFHVSVERETGKKLKCLRS 2414
T+ S+ G QYFVTFIDDHSRK+WVY LK K EV AFK + VE ETG K+K LR+
Sbjct: 457 GPTTVSSISGKQYFVTFIDDHSRKVWVYFLKHKSEVFEAFKMWKAMVENETGLKIKKLRT 516
Query: 2413 DNGGEYRGP-FEHYCKTHGIRHEKVPPKTPQMNGVAERFNRTIAEKVRSMLSHAKLPKSF 2237
DNGGEY F+ +C HGIR E+ P TPQ NGVAER NRT+ E+ RSM + LPK F
Sbjct: 517 DNGGEYEDTRFKRFCYEHGIRMERTVPGTPQQNGVAERMNRTLTERARSMRMQSGLPKQF 576
Query: 2236 WGEAVATAVDLINLSPSRPLNGKIPEEVWTGKKASYRNLRVFGCKASVHIPKDERAKLDA 2057
W EAV TA LIN PS PL KIPEEVW+GK+ +LRVFGC A VHI R KLD
Sbjct: 577 WAEAVNTAAYLINRGPSVPLEHKIPEEVWSGKEVKLSHLRVFGCVAYVHISDQGRNKLDP 636
Query: 2056 KAKECVYLGSPRDELGFRLWDPANRKIVRSRDVVFFEDQTIQDIKKMEKPKLKVSYDQSP 1877
K+K+C ++G DE G+RLWD N+K++RSRDV+F E +D + K P
Sbjct: 637 KSKKCTFIGYGEDEFGYRLWDDENKKMIRSRDVIFNEGVMYKDKQNTSASNSKPI---EP 693
Query: 1876 LVVNKSGG-ETPQTEPDQDIQLXXXXXXXXXXXXXXXXXXXQSGEDVQHEPQVXXXXXXX 1700
V E+P E Q ++ G+ EP++
Sbjct: 694 TYVEVDDALESPPVESSQSVE----------------SIEPDRGQQCVPEPELRRSSRVP 737
Query: 1699 XXXXRYFSDEYINLTDEGEPQSFAEAIEMEEKDKWLQAMEEEIQSLKENQTYDLVELPKG 1520
RY + Y+ LTD GEP+ ++EA + + KW AM+EE++SL NQT++L +LP G
Sbjct: 738 VPNRRYMN--YMLLTDGGEPEDYSEACQTRDASKWELAMKEEMKSLISNQTWELAKLPMG 795
Query: 1519 RKALRNKWVFKLKNEENNPNPRYKARIVVKGCNQKKGIDFDEIFSPVVKMTSIRAILGLA 1340
+KAL NKWV+++K EE++ + RYKAR+VVKG QK+G+D+ EIFSPVVK+ +IR +L +
Sbjct: 796 KKALHNKWVYRVK-EEHDGSKRYKARLVVKGFQQKEGVDYTEIFSPVVKLNTIRTVLSIV 854
Query: 1339 AKLDLEIEQLDVKTAFLHGDLEEEIYMEQPEGFEEPGKEHLVCRLKKSLYGLKQAPRQWY 1160
A +L +EQLDVKTAFLHGDL+EEIYM QPEGF E GKE++VCRLKKSLYGLKQAPRQWY
Sbjct: 855 ASEELYLEQLDVKTAFLHGDLDEEIYMHQPEGFSEKGKENMVCRLKKSLYGLKQAPRQWY 914
Query: 1159 KKFDSFMTQHNFKKTSADHCVFVKNYENGESIILLLYVDDMLIVGKDXXXXXXXXXXXXX 980
+KF+SFM + FKK +ADHC F K Y N IILLLYVDDML+ G +
Sbjct: 915 RKFESFMHKEGFKKCNADHCCFFKRY-NSSYIILLLYVDDMLVAGSNMIEIRNLKKQLSK 973
Query: 979 SFAMKDLGAVKRILGMKITRDRSKRMLWVSQEDYIEKVLKRFNMHNAKPARVPLAGHFKL 800
F MKDLG K+ILGM+ITRD+ K L +SQ +YI +VL+RFNM NAKP PLA HF+L
Sbjct: 974 EFDMKDLGPAKKILGMQITRDKQKGTLQLSQAEYINRVLQRFNMSNAKPVSTPLASHFRL 1033
Query: 799 SKSQCPXXXXXXXXXXKVPYSSAVGSLMYAMVCTRPDIGYAVGIVSRFLSNPGKEHWEAV 620
S Q P K PY+SA+GSLMYAMVCTRPDIGYAVG+VSRF+SNPGK HWEAV
Sbjct: 1034 STDQSPKTEEEKELMAKTPYASAIGSLMYAMVCTRPDIGYAVGVVSRFMSNPGKAHWEAV 1093
Query: 619 KWILRYLRGTAKRSLCFGNGDQMLIGYSDSDMAGDVDSRKSTSGYLITFAGGAVSWQSKL 440
KWILRYLR T ++ LCF G+ + GY D+D AG++D R+ST+GY+ T AVSW S++
Sbjct: 1094 KWILRYLRATKEKCLCFSKGELKVQGYVDADFAGEIDHRRSTTGYIFTVGTTAVSWMSQI 1153
Query: 439 QKCVTLSTAEAEYVAVTETSKEMLWMKNFLIELGHDQVDYVVNCDNQSTIHLAKNPMFHS 260
QK V LST EAEYVAVTE SKE++W++ L ELG Q V++ D+QS IHLAKN FHS
Sbjct: 1154 QKIVALSTTEAEYVAVTEASKELIWLQGLLTELGFIQERSVLHSDSQSAIHLAKNSTFHS 1213
Query: 259 RSKHIDIRYHWIREALDEKRLKIEKIHTDLNWSDMMTKSLPTKKVEDCCQGAGV 98
R+KHID+RYH+IR L+++ L + KI N +DM+TK + T+K+ C G+
Sbjct: 1214 RTKHIDLRYHFIRSLLEDEVLTLRKILGSKNPADMLTKVVTTEKLRLCSTSIGL 1267
>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 1045 bits (2701), Expect = 0.0
Identities = 563/1322 (42%), Positives = 790/1322 (59%), Gaps = 12/1322 (0%)
Frame = -2
Query: 4045 KLTADNYSYWKPMMEDHLYCKDLYEPITNEDMPEGKTEKEWEVLNRKAVAMIRKYIDKSL 3866
K N+S WK + L + + I + P T+++W+ ++ AVA + + S+
Sbjct: 9 KFNGRNFSLWKLKIRAILRKDNCLDAI--DGRPADITDEKWKEMDDNAVANLHLAMADSV 66
Query: 3865 FEHVSTYTNAYELWTKLESMIQKKTPRNKAHLVRRLVKLEYSDGQNMIEHLNTFKGIVNQ 3686
++ A E+W L + + K+ N+ L RRL L + ++ +H+NT + +Q
Sbjct: 67 LSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINTLNTLFSQ 126
Query: 3685 LTKADMKIDDELQTXXXXXXLPESWDTLVVTLSNSTPGGKLSLDTITDSLLNEESRRK-- 3512
LT +D KI + + LP+S+D L++ ++N+ L D + ++L EESRRK
Sbjct: 127 LTASDFKIAENERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAILEEESRRKNK 186
Query: 3511 -ERGMSSHSEANVVENXXXXXXXXXXXXXXXXXXXXXXXXGLTCFYCGKDGHKKPECRFL 3335
ER SS + + C+ CG GH K EC +
Sbjct: 187 EERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNIKCYGCGMKGHVKKECWNI 246
Query: 3334 KRDQKAGTVHPDVIDPKKKLEEKTTTAVASDDENVFLVSEVNYLNVVFDDCTWIVDTGAS 3155
K++ + + + + + + D E ++ + + + WI+D+GA+
Sbjct: 247 KKNGEKNS--------EASTSQGCVASTSDDGEILYSEAATSSKGERRLNDVWIMDSGAT 298
Query: 3154 FHVTPHEGFFSSYQKGDFGKVKMGNHVTSKIVGIGEVILLTENGNKLVLKEVRHVPEMRL 2975
+H+TPH +F SY+ G V MGN +I G+G + L +G ++ VRHV ++
Sbjct: 299 WHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKK 358
Query: 2974 NLISAGKLDDAGMNNQFGGGKWKLSRGSMVVARGRK-EGSLYITHGK-LCKGEINVA--- 2810
NL+S G+LDD G G K+ +G++VV + K +LY+ G L + + +VA
Sbjct: 359 NLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASVAAAS 418
Query: 2809 QEESKELWHKRLGHMSEKGLEILAKDHL-QSIKGQPLESCEDCLAGKQRRVSFQRSDNGR 2633
QEE+ +WH+RLGHMSE+GL++L + +L +K L CE C+ KQ R+ F R
Sbjct: 419 QEETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISKQHRLKFARVTT-- 476
Query: 2632 RRKHILDLVHSDVCSTSERSLGGAQYFVTFIDDHSRKLWVYLLKRKDEVLRAFKEFHVSV 2453
R KHILDL+HSDV + E SLGGA+YFV+FIDD+SR+LWVY +K+K +V FK F +
Sbjct: 477 RSKHILDLIHSDVWESPELSLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQI 536
Query: 2452 ERETGKKLKCLRSDNGGEY-RGPFEHYCKTHGIRHEKVPPKTPQMNGVAERFNRTIAEKV 2276
E ETGKK+KCLR+DNGGEY G F +CK GI + TPQ NGVAER NRT+ E+
Sbjct: 537 ELETGKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERT 596
Query: 2275 RSMLSHAKLPKSFWGEAVATAVDLINLSPSRPLNGKIPEEVWTGKKASYRNLRVFGCKAS 2096
R+ML A + KSFW EAV TA +IN SPS ++ K P E+W GK Y +L VFGC
Sbjct: 597 RAMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPVDYSSLHVFGCPVY 656
Query: 2095 VHIPKDERAKLDAKAKECVYLGSPRDELGFRLWDPANRKIVRSRDVVFFED--QTIQDIK 1922
V ER KLD K+++C++LG + G+RLWDP RK+V SRDVVF E+ Q+ Q
Sbjct: 657 VMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAENELQSKQKND 716
Query: 1921 KMEKPKLKVSYDQSPLVVNKSGGETPQTEPDQDIQLXXXXXXXXXXXXXXXXXXXQSGED 1742
K V ++ + S E E + D
Sbjct: 717 STSKETAIVQMEEKSKESDSSEAEPVHEEQEPD----------------------DVNNG 754
Query: 1741 VQHEPQVXXXXXXXXXXXRYFSDEYINLTDEGEPQSFAEAIEMEEKDKWLQAMEEEIQSL 1562
V+ + D Y +T+EGEP +F EA+ + +W+ AM EE+++L
Sbjct: 755 VRRSTRQTQKPSWQSDYVMTSHDAYCLITEEGEPSTFHEALNGSDASQWMTAMHEEMEAL 814
Query: 1561 KENQTYDLVELPKGRKALRNKWVFKLKNEENNPNPRYKARIVVKGCNQKKGIDFDEIFSP 1382
N+T++LVELPKGRKA+ NKWV+K+K + N+ RY+AR+VVKG QK+GIDF+EIFSP
Sbjct: 815 HRNKTWELVELPKGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSP 874
Query: 1381 VVKMTSIRAILGLAAKLDLEIEQLDVKTAFLHGDLEEEIYMEQPEGFEEPGKEHLVCRLK 1202
VV++T+IR +L + A LDL +EQLDVKTAFLHG+LEEEIYM QPEGF+E GKE+LVCRL
Sbjct: 875 VVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLT 934
Query: 1201 KSLYGLKQAPRQWYKKFDSFMTQHNFKKTSADHCVFVKNYENGESIILLLYVDDMLIVGK 1022
KSLYGLKQAPR WYK+FDSF+ ++ + S+DHC + K ++ + IILLLYVDDML+VG
Sbjct: 935 KSLYGLKQAPRCWYKRFDSFIISLDYSRLSSDHCTYYKRFDGNDFIILLLYVDDMLVVGP 994
Query: 1021 DXXXXXXXXXXXXXSFAMKDLGAVKRILGMKITRDRSKRMLWVSQEDYIEKVLKRFNMHN 842
+ F MKDLG +ILGM+I RDR R +W+SQ++Y+ KVL+RFNM +
Sbjct: 995 NKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLRRFNMQD 1054
Query: 841 AKPARVPLAGHFKLSKSQCPXXXXXXXXXXKVPYSSAVGSLMYAMVCTRPDIGYAVGIVS 662
KP PL +FKLS P +VPY+SAVGSLMYAM+CTRPDI AVG+VS
Sbjct: 1055 CKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVS 1114
Query: 661 RFLSNPGKEHWEAVKWILRYLRGTAKRSLCFGNGDQMLIGYSDSDMAGDVDSRKSTSGYL 482
RF+++PGKEHW AVK I+RY++GT+ ++CFG + + GY DSD AGD D RKST+GY+
Sbjct: 1115 RFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSELTVRGYVDSDFAGDHDKRKSTTGYV 1174
Query: 481 ITFAGGAVSWQSKLQKCVTLSTAEAEYVAVTETSKEMLWMKNFLIELGHDQVDYVVNCDN 302
T AGGAVSW SKLQ V LST EAEY+A T+ KE +WM+ + ELGH Q V CD+
Sbjct: 1175 FTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYCDS 1234
Query: 301 QSTIHLAKNPMFHSRSKHIDIRYHWIREALDEKRLKIEKIHTDLNWSDMMTKSLPTKKVE 122
QS +H+A+NP FHSR+KHI ++YH++RE ++E + ++KIHT+ N +D MTKS+ T K
Sbjct: 1235 QSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADAMTKSINTDKFI 1294
Query: 121 DC 116
C
Sbjct: 1295 WC 1296
>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 1036 bits (2679), Expect = 0.0
Identities = 559/1329 (42%), Positives = 792/1329 (59%), Gaps = 12/1329 (0%)
Frame = -2
Query: 4045 KLTADNYSYWKPMMEDHLYCKDLYEPITNEDMPEGKTEKEWEVLNRKAVAMIRKYIDKSL 3866
K N+S WK + L + + I + T+++W+ ++ AVA + + S+
Sbjct: 9 KFNGRNFSLWKLKIRAILRKDNCLDAI--DGRLADITDEKWKEMDDNAVANLHLAMADSV 66
Query: 3865 FEHVSTYTNAYELWTKLESMIQKKTPRNKAHLVRRLVKLEYSDGQNMIEHLNTFKGIVNQ 3686
++ A E+W L + + K+ N+ L RRL L+ + ++ +H+NT + +Q
Sbjct: 67 LSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLQMGESTSVTDHINTLNTLFSQ 126
Query: 3685 LTKADMKIDDELQTXXXXXXLPESWDTLVVTLSNSTPGGKLSLDTITDSLLNEESRRK-- 3512
LT +D KI + LP+S+D L++ ++N+ L D + ++L EESRRK
Sbjct: 127 LTASDFKIAKNERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAILEEESRRKNK 186
Query: 3511 -ERGMSSHSEANVVENXXXXXXXXXXXXXXXXXXXXXXXXGLTCFYCGKDGHKKPECRFL 3335
ER SS + + C+ CG GH K EC +
Sbjct: 187 EERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNIKCYGCGMKGHVKKECWNI 246
Query: 3334 KRDQKAGTVHPDVIDPKKKLEEKTTTAVASDDENVFLVSEVNYLNVVFDDCTWIVDTGAS 3155
K++ + + + + + + D E ++ + + + WI+D+GA+
Sbjct: 247 KKNGEKNS--------EASTSQGCVASTSDDGEILYSEAATSSKGERRLNDVWIMDSGAT 298
Query: 3154 FHVTPHEGFFSSYQKGDFGKVKMGNHVTSKIVGIGEVILLTENGNKLVLKEVRHVPEMRL 2975
+H+TPH +F SY+ G V MGN +I G+G + L +G ++ VRHV ++
Sbjct: 299 WHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKK 358
Query: 2974 NLISAGKLDDAGMNNQFGGGKWKLSRGSMVVARGRK-EGSLYITHGK-LCKGEINVA--- 2810
NL+S G+LDD G G K+ +G++VV + K +LY+ G L + + +VA
Sbjct: 359 NLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASVAAAS 418
Query: 2809 QEESKELWHKRLGHMSEKGLEILAKDHL-QSIKGQPLESCEDCLAGKQRRVSFQRSDNGR 2633
QEE+ +WH+RLGHMSE+GL++L + +L +K L CE C+ KQ R+ F R
Sbjct: 419 QEETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVMSKQHRLKFARVTT-- 476
Query: 2632 RRKHILDLVHSDVCSTSERSLGGAQYFVTFIDDHSRKLWVYLLKRKDEVLRAFKEFHVSV 2453
R KHILDL+HSDV + E SLGGA+YFV+FIDD+SR+LWVY +K+K +V FK F +
Sbjct: 477 RSKHILDLIHSDVWESPEISLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQI 536
Query: 2452 ERETGKKLKCLRSDNGGEY-RGPFEHYCKTHGIRHEKVPPKTPQMNGVAERFNRTIAEKV 2276
E ET KK+KCLR+DNGGEY G F +CK GI + TPQ NGVAER NRT+ E+
Sbjct: 537 ELETEKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERT 596
Query: 2275 RSMLSHAKLPKSFWGEAVATAVDLINLSPSRPLNGKIPEEVWTGKKASYRNLRVFGCKAS 2096
R+ML A + KSFW EA TA +IN SPS ++ K P E+W GK Y +L VFGC
Sbjct: 597 RAMLKTAGMAKSFWAEAAKTACYVINRSPSTAIDLKTPMEMWKGKPVDYSSLHVFGCPVY 656
Query: 2095 VHIPKDERAKLDAKAKECVYLGSPRDELGFRLWDPANRKIVRSRDVVFFED--QTIQDIK 1922
V E+ KLD K+++C++LG + G+RLWDP RK+V SRDVVF E+ Q+ Q
Sbjct: 657 VMYNSQEKTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAENELQSEQKND 716
Query: 1921 KMEKPKLKVSYDQSPLVVNKSGGETPQTEPDQDIQLXXXXXXXXXXXXXXXXXXXQSGED 1742
K V ++ + S E+ E + D +
Sbjct: 717 STSKETAIVQMEEKSKESDSSEAESVHEEQEPD----------------------DVNDG 754
Query: 1741 VQHEPQVXXXXXXXXXXXRYFSDEYINLTDEGEPQSFAEAIEMEEKDKWLQAMEEEIQSL 1562
V+ + D Y +T+EGEP +F EA+ + +W+ AM EE+++L
Sbjct: 755 VRRSTRQTQKPSWQSDYVMTSHDAYCLITEEGEPSTFHEALNGSDASQWMTAMHEEMEAL 814
Query: 1561 KENQTYDLVELPKGRKALRNKWVFKLKNEENNPNPRYKARIVVKGCNQKKGIDFDEIFSP 1382
N+T++LVELPKGRKA+ NKWV+K+K + N+ RY+AR+VVKG QK+GIDF+EIFSP
Sbjct: 815 HRNKTWELVELPKGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSP 874
Query: 1381 VVKMTSIRAILGLAAKLDLEIEQLDVKTAFLHGDLEEEIYMEQPEGFEEPGKEHLVCRLK 1202
VV++T+IR +L + A LDL +EQLDVKTAFLHG+LEEEIYM QPEGF+E GKE+LVCRL
Sbjct: 875 VVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLT 934
Query: 1201 KSLYGLKQAPRQWYKKFDSFMTQHNFKKTSADHCVFVKNYENGESIILLLYVDDMLIVGK 1022
KSLYGLKQAPR WYK+FDSF+ ++ + S+DHC + K ++ + IILLLYVDDML+VG
Sbjct: 935 KSLYGLKQAPRCWYKRFDSFIISLDYNRLSSDHCTYYKRFDGNDFIILLLYVDDMLVVGP 994
Query: 1021 DXXXXXXXXXXXXXSFAMKDLGAVKRILGMKITRDRSKRMLWVSQEDYIEKVLKRFNMHN 842
+ F MKDLG +ILGM+I RDR R +W+SQ++Y+ KVL+RFNM +
Sbjct: 995 NKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLRRFNMQD 1054
Query: 841 AKPARVPLAGHFKLSKSQCPXXXXXXXXXXKVPYSSAVGSLMYAMVCTRPDIGYAVGIVS 662
KP PL +FKLS P +VPY+SAVGSLMYAM+CTRPDI AVG+VS
Sbjct: 1055 CKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVS 1114
Query: 661 RFLSNPGKEHWEAVKWILRYLRGTAKRSLCFGNGDQMLIGYSDSDMAGDVDSRKSTSGYL 482
RF+++PGKEHW AVK I+RY++GT+ ++CFG + + GY DSD AGD D RKST+GY+
Sbjct: 1115 RFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSELTVWGYVDSDFAGDHDKRKSTTGYV 1174
Query: 481 ITFAGGAVSWQSKLQKCVTLSTAEAEYVAVTETSKEMLWMKNFLIELGHDQVDYVVNCDN 302
T AGGAVSW SKLQ V LST EAEY+A T+ KE +WM+ + ELGH Q V CD+
Sbjct: 1175 FTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYCDS 1234
Query: 301 QSTIHLAKNPMFHSRSKHIDIRYHWIREALDEKRLKIEKIHTDLNWSDMMTKSLPTKKVE 122
QS +H+A+NP FHSR+KHI ++YH++RE ++E + ++KIHT+ N +D+MTK + T K
Sbjct: 1235 QSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVMTKPINTDKFV 1294
Query: 121 DCCQGAGVV 95
C G++
Sbjct: 1295 WCRSSYGLL 1303
>gb|KYP60296.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 990
Score = 973 bits (2515), Expect = 0.0
Identities = 510/1027 (49%), Positives = 668/1027 (65%), Gaps = 17/1027 (1%)
Frame = -2
Query: 3892 IRKYIDKSLFEHVSTYTNAYELWTKLESMIQKKTPRNKAHLVRRLVKLEYSDGQNMIEHL 3713
IR++++ +++ H++ T+A LW K+ES+ K+ NK +L+ L+ L Y + ++ +HL
Sbjct: 2 IRQFVEDNVYNHIANETHARTLWKKIESLYASKSGNNKLYLLNCLMNLRYRESSSISDHL 61
Query: 3712 NTFKGIVNQLTKADMKIDDELQTXXXXXXLPESWDTLVVTLSNSTPGGKLSLDTITDSLL 3533
N F+G+++QL++ +K DDE LPESW+T V+++NS P G +SL
Sbjct: 62 NEFQGLLDQLSRMGIKFDDEFLVLWLLNTLPESWETFRVSITNSAPNGVVSLQAKKSGAF 121
Query: 3532 NEESRRKERGMSSHSEANVVENXXXXXXXXXXXXXXXXXXXXXXXXG-LTCFYCGKDGHK 3356
NEE RRK +G SS S+ V EN + C YC K H
Sbjct: 122 NEEMRRKAQGSSSQSKVLVTENRGRSQKKEPKGGREKSRSKSKSRYKNVECHYCHKTWHI 181
Query: 3355 KPECRFLKRDQKAGTVHPDVIDPKKKLEEKTTTAVASDDENVFLVSEVNYLNVVFDDCTW 3176
+ C K++ K V N+V D+ W
Sbjct: 182 QRNCFLWKKENKGKKV-----------------------------------NLVSDESMW 206
Query: 3175 IVDTGASFHVTPHEGFFSSYQKGDFGKVKMGNHVTSKIVGIGEVILLTENGNKLVLKEVR 2996
IVD+GA+ HVTP + FF+SY GDFG +KMGN SK++G+G+V L T G +L+L+ V+
Sbjct: 207 IVDSGATLHVTPRKEFFTSYTSGDFGVLKMGNDGVSKVIGVGDVFLQTNMGMQLLLRGVK 266
Query: 2995 HVPEMRLNLISAGKLDDAGMNNQFGGGKWKLSRGSMVVARGRKEGSLYITHGKLCKGEIN 2816
HVP++R NLIS LDD G +N FG GKWKL++G++VVARG K LY T + K +N
Sbjct: 267 HVPDVRFNLISVQILDDGGYDNHFGSGKWKLTKGNLVVARGEKNSKLYWTKALVAKDNVN 326
Query: 2815 VAQEESKELWHKRLGHMSEKGLEILAK-DHLQSIKGQPLESCEDCLAGKQRRVSFQRSDN 2639
E+ LWH+RL H+SEKGL LAK D LQ +K LE C C+AGKQ RVSF++
Sbjct: 327 AMDMEAS-LWHRRLSHISEKGLNCLAKKDVLQGLKIAELEKCSHCMAGKQTRVSFKKHPP 385
Query: 2638 GRRRKHILDLVHSDVCSTSE-RSLGGAQYFVTFIDDHSRKLWVYLLKRKDEVLRAFKEFH 2462
R+ K +L LVHSDVC + +S GA YFVTFIDD S+KLWVY L+RKD VL FK+FH
Sbjct: 386 SRKSK-LLQLVHSDVCGPLKVKSFSGALYFVTFIDDCSKKLWVYALQRKD-VLERFKQFH 443
Query: 2461 VSVERETGKKLKCLRSDNGGEYRGPFEHYCKTHGIRHEKVPPKTPQMNGVAERFNRTIAE 2282
VER++GKKLK +R+DNGGEY GPF+ YCK HGI HEK PPKTPQ+N +AER N T+ E
Sbjct: 444 ALVERQSGKKLKRIRTDNGGEYCGPFDVYCKQHGIAHEKTPPKTPQLNDLAERMNMTLLE 503
Query: 2281 KVRSMLSHAKLPKSFWGEAVATAVDLINLSPSRPLNGKIPEEVWTGKKASYRNLRVFGCK 2102
+VR MLS AKLPK FWGEA+ TAV +INL+P+ LN ++P+++W GK ASY +LRVFGCK
Sbjct: 504 RVRCMLSDAKLPKHFWGEALYTAVHVINLTPTVILNSEVPDKIWFGKNASYDHLRVFGCK 563
Query: 2101 ASVHIPKDERAKLDAKAKECVYLGSPRDELGFRLWDPANRKIVRSRDVVFFEDQTIQDIK 1922
A VHIP+DER+KLD K ++C+++G DE G+R +DP +K+VRSRDV F EDQTI+DI
Sbjct: 564 AFVHIPRDERSKLDTKTRQCIFIGYGEDEFGYRFYDPIEKKLVRSRDVQFMEDQTIEDID 623
Query: 1921 KMEKP---KLKVSYDQSPLVV------NKSGGETPQTEPDQ--DIQLXXXXXXXXXXXXX 1775
K+EK K + D P+ + N G P + D D QL
Sbjct: 624 KVEKTTPEKDRNLTDVDPMRLPIHNLDNVDGSVQPGEQHDDVDDQQLGGGLDVPIDDDQE 683
Query: 1774 XXXXXXQSGEDVQHEP---QVXXXXXXXXXXXRYFSDEYINLTDEGEPQSFAEAIEMEEK 1604
D EP Q+ RY SDEY+ LTD GEP+ F EA+E EEK
Sbjct: 684 EHEMSHDENIDDAPEPHQVQLRRSNRQRQPSTRYSSDEYVTLTDGGEPECFEEALESEEK 743
Query: 1603 DKWLQAMEEEIQSLKENQTYDLVELPKGRKALRNKWVFKLKNEENNPNPRYKARIVVKGC 1424
+WL AM++E++SL +N TYDLV+LPKG++AL N+W+F++K E N+ +PRYKAR+VVKG
Sbjct: 744 QQWLDAMQDEMKSLHDNHTYDLVKLPKGKRALENRWIFRVKQESNSTSPRYKARLVVKGF 803
Query: 1423 NQKKGIDFDEIFSPVVKMTSIRAILGLAAKLDLEIEQLDVKTAFLHGDLEEEIYMEQPEG 1244
Q+KG+DF+EIFSPVVKM+SIRA+L LAA L+LE+EQ+DVKTAFLHGDLEEEIYM QP+G
Sbjct: 804 RQRKGVDFNEIFSPVVKMSSIRAVLSLAATLNLEVEQMDVKTAFLHGDLEEEIYMRQPDG 863
Query: 1243 FEEPGKEHLVCRLKKSLYGLKQAPRQWYKKFDSFMTQHNFKKTSADHCVFVKNYENGESI 1064
F+ GKE VCRL+KSLYGLKQAPRQWYKKF+SFM + +KKT++DHCVFVK + + + I
Sbjct: 864 FQVKGKEDCVCRLRKSLYGLKQAPRQWYKKFESFMCEQGYKKTTSDHCVFVKMFSDDDFI 923
Query: 1063 ILLLYVDDMLIVGKDXXXXXXXXXXXXXSFAMKDLGAVKRILGMKITRDRSKRMLWVSQE 884
ILLLYVDDMLIVGKD SFAMKD+GA K+ILG++I RDR K LW+SQE
Sbjct: 924 ILLLYVDDMLIVGKDVSRIDRLKKKLGESFAMKDMGAAKQILGIRIIRDREKGKLWLSQE 983
Query: 883 DYIEKVL 863
YI++VL
Sbjct: 984 QYIKRVL 990
>gb|KYP42630.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 701
Score = 782 bits (2020), Expect = 0.0
Identities = 397/704 (56%), Positives = 494/704 (70%), Gaps = 14/704 (1%)
Frame = -2
Query: 2299 NRTIAEKVRSMLSHAKLPKSFWGEAVATAVDLINLSPSRPLNGKIPEEVWTGKKASYRNL 2120
NRT+ E+VR MLS AKLPK FWGEA+ TAV +INL+P L+ ++P+++W GK ASY L
Sbjct: 2 NRTLLERVRCMLSDAKLPKHFWGEALYTAVHVINLTPIVILDSEVPDKIWFGKNASYDYL 61
Query: 2119 RVFGCKASVHIPKDERAKLDAKAKECVYLGSPRDELGFRLWDPANRKIVRSRDVVFFEDQ 1940
VFGCKA VH+ KDER+KLD K ++C+++G +DE G+RL+DP +K+VRS DV EDQ
Sbjct: 62 HVFGCKAFVHVSKDERSKLDTKTRQCIFIGYGQDEFGYRLYDPVEKKLVRSHDVQLMEDQ 121
Query: 1939 TIQDIKKMEKPKLKVSY---DQSPLVVNKSGGETPQTEPDQDIQLXXXXXXXXXXXXXXX 1769
TI+DI K+EK K D +P+ + + +T+ D Q
Sbjct: 122 TIEDINKVEKTTPKKDNNLTDGNPMRLPIHNLDNVETDAPNDEQHGDVDDQQNGDVLEVP 181
Query: 1768 XXXXQSGEDVQHE---------PQVXXXXXXXXXXXR--YFSDEYINLTDEGEPQSFAEA 1622
Q D+ H+ PQV Y SDEY+ LTD GEP+ F EA
Sbjct: 182 IDDTQEEHDMVHDDDLDNAHELPQVPPRRSNKLRQFSSRYSSDEYVALTDGGEPECFEEA 241
Query: 1621 IEMEEKDKWLQAMEEEIQSLKENQTYDLVELPKGRKALRNKWVFKLKNEENNPNPRYKAR 1442
+E E+K +WL AM++E++SL +N TYDLV+LPKG++AL N+W+F++K E N+ +PRYKAR
Sbjct: 242 LESEKKQRWLDAMQDEMKSLHDNHTYDLVKLPKGKRALENRWIFRVKQESNSTSPRYKAR 301
Query: 1441 IVVKGCNQKKGIDFDEIFSPVVKMTSIRAILGLAAKLDLEIEQLDVKTAFLHGDLEEEIY 1262
+VVKG Q+ +DF+EIFSPVVKM+SIR +L L A LDLE+EQ+DVKTAFLHG+LEEEIY
Sbjct: 302 LVVKGFRQRNDVDFNEIFSPVVKMSSIRTVLSLVATLDLEVEQMDVKTAFLHGNLEEEIY 361
Query: 1261 MEQPEGFEEPGKEHLVCRLKKSLYGLKQAPRQWYKKFDSFMTQHNFKKTSADHCVFVKNY 1082
M+QP+GF GKE VCRL+KSLYGLKQAPRQWYKKF+SFM + +KKT++DHCVFVK +
Sbjct: 362 MKQPDGFLVEGKEDHVCRLRKSLYGLKQAPRQWYKKFESFMCEQGYKKTTSDHCVFVKKF 421
Query: 1081 ENGESIILLLYVDDMLIVGKDXXXXXXXXXXXXXSFAMKDLGAVKRILGMKITRDRSKRM 902
+ + IILLLYVDDMLIV KD +FAMKDLGA K+ILG+ I ++
Sbjct: 422 SDDDFIILLLYVDDMLIVEKDVSRIDRLKKQLGEAFAMKDLGAAKKILGISI----KEKK 477
Query: 901 LWVSQEDYIEKVLKRFNMHNAKPARVPLAGHFKLSKSQCPXXXXXXXXXXKVPYSSAVGS 722
LW+SQE YI+KVL+RF M N+K PLA HFKLS Q P KVPY AVGS
Sbjct: 478 LWLSQEHYIKKVLQRFQMENSKVVGTPLAAHFKLSVKQSPSNEAEKTYMSKVPYVYAVGS 537
Query: 721 LMYAMVCTRPDIGYAVGIVSRFLSNPGKEHWEAVKWILRYLRGTAKRSLCFGNGDQMLIG 542
LMY MVCTRPD+ Y VG VSRFLSNP +EHW AVKWILRYL GT+ LCFG L+G
Sbjct: 538 LMYPMVCTRPDVAYVVGTVSRFLSNPSREHWNAVKWILRYLHGTSGLRLCFGGDKPTLVG 597
Query: 541 YSDSDMAGDVDSRKSTSGYLITFAGGAVSWQSKLQKCVTLSTAEAEYVAVTETSKEMLWM 362
YS+SDMAGDVDSRKSTSGYLI FAGG V+WQS+LQ+CVTLST EAE++A+TE KE+LW+
Sbjct: 598 YSNSDMAGDVDSRKSTSGYLINFAGGVVAWQSRLQRCVTLSTTEAEFIAITEACKELLWL 657
Query: 361 KNFLIELGHDQVDYVVNCDNQSTIHLAKNPMFHSRSKHIDIRYH 230
K FL EL Q Y + D+QS IHL KNP FHSRSKHID+RYH
Sbjct: 658 KKFLQELDFVQDKYPLFVDSQSVIHLGKNPTFHSRSKHIDVRYH 701
>gb|KYP63120.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 501
Score = 754 bits (1946), Expect = 0.0
Identities = 358/501 (71%), Positives = 417/501 (83%)
Frame = -2
Query: 1585 MEEEIQSLKENQTYDLVELPKGRKALRNKWVFKLKNEENNPNPRYKARIVVKGCNQKKGI 1406
M+EE+QSL EN TY+LVELPKGR+AL+NKWV+++K E+NN PRYKAR+VVKG +Q+KGI
Sbjct: 1 MQEEMQSLHENHTYELVELPKGRRALKNKWVYRIKTEDNNTKPRYKARLVVKGFSQEKGI 60
Query: 1405 DFDEIFSPVVKMTSIRAILGLAAKLDLEIEQLDVKTAFLHGDLEEEIYMEQPEGFEEPGK 1226
DF++IFSPVVKM+SIR ILG+AA DLEIEQLDVKTAFLHGDLEEEI MEQPEGF+ PGK
Sbjct: 61 DFEKIFSPVVKMSSIRVILGIAATQDLEIEQLDVKTAFLHGDLEEEICMEQPEGFKVPGK 120
Query: 1225 EHLVCRLKKSLYGLKQAPRQWYKKFDSFMTQHNFKKTSADHCVFVKNYENGESIILLLYV 1046
++LVCRL KSLYGLKQAPRQWYKKF+ FM +H FK+T +DHCVF+K Y +G+ +ILLLYV
Sbjct: 121 QNLVCRLTKSLYGLKQAPRQWYKKFEFFMAEHEFKRTESDHCVFIKRYASGDFLILLLYV 180
Query: 1045 DDMLIVGKDXXXXXXXXXXXXXSFAMKDLGAVKRILGMKITRDRSKRMLWVSQEDYIEKV 866
DDMLIVG+D SFAMKDLG K+ILGM+ITRDRSKR+LW+SQE YIEKV
Sbjct: 181 DDMLIVGQDRIKIAALKKDLSKSFAMKDLGPAKQILGMRITRDRSKRLLWLSQERYIEKV 240
Query: 865 LKRFNMHNAKPARVPLAGHFKLSKSQCPXXXXXXXXXXKVPYSSAVGSLMYAMVCTRPDI 686
L++FNM KP PLAGHF+LS Q P K+PYSS VGSLMYAM+CTRPDI
Sbjct: 241 LEQFNMDKCKPVNTPLAGHFRLSSKQSPTSEREMEEMKKIPYSSVVGSLMYAMICTRPDI 300
Query: 685 GYAVGIVSRFLSNPGKEHWEAVKWILRYLRGTAKRSLCFGNGDQMLIGYSDSDMAGDVDS 506
YAVG+VSRFL+NPG EHW AVKWILRYLRGT+KR LCFG G +L GY+D+D+AGD+DS
Sbjct: 301 AYAVGVVSRFLANPGNEHWLAVKWILRYLRGTSKRCLCFGKGKPVLEGYTDADLAGDIDS 360
Query: 505 RKSTSGYLITFAGGAVSWQSKLQKCVTLSTAEAEYVAVTETSKEMLWMKNFLIELGHDQV 326
RKSTSGYL TF GGAVSWQSKLQKCV LST EAEY+A TE KEMLWMKN L+ELG DQ
Sbjct: 361 RKSTSGYLTTFVGGAVSWQSKLQKCVALSTTEAEYIAATEACKEMLWMKNMLLELGVDQE 420
Query: 325 DYVVNCDNQSTIHLAKNPMFHSRSKHIDIRYHWIREALDEKRLKIEKIHTDLNWSDMMTK 146
YV+ CDNQS I+LAKN FHSR+KHID RYHWIRE L+EK+L ++K+HTD NWSDMMTK
Sbjct: 421 RYVLKCDNQSAIYLAKNSTFHSRTKHIDTRYHWIREVLEEKKLHLDKVHTDENWSDMMTK 480
Query: 145 SLPTKKVEDCCQGAGVVVPPN 83
+PTKK EDCCQGAG+++PPN
Sbjct: 481 VIPTKKFEDCCQGAGLLLPPN 501