BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Angelica27_contig00023327
         (3337 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AAV88069.1 hypothetical retrotransposon [Ipomoea batatas]             880   0.0  
BAA11674.1 unnamed protein product [Nicotiana tabacum]                866   0.0  
XP_017609491.1 PREDICTED: retrovirus-related Pol polyprotein fro...   788   0.0  
CAN75440.1 hypothetical protein VITISV_007304 [Vitis vinifera]        798   0.0  
KYP31853.1 Retrovirus-related Pol polyprotein from transposon TN...   788   0.0  
CAN66323.1 hypothetical protein VITISV_007384 [Vitis vinifera]        775   0.0  
KYP76811.1 Retrovirus-related Pol polyprotein from transposon TN...   806   0.0  
KYP76810.1 Retrovirus-related Pol polyprotein from transposon TN...   806   0.0  
AER13172.1 putative gag/pol polyprotein [Phaseolus vulgaris]          791   0.0  
GAU39612.1 hypothetical protein TSUD_276520 [Trifolium subterran...   771   0.0  
KYP42630.1 Retrovirus-related Pol polyprotein from transposon TN...   742   0.0  
KYP66486.1 Retrovirus-related Pol polyprotein from transposon TN...   758   0.0  
P10978.1 RecName: Full=Retrovirus-related Pol polyprotein from t...   752   0.0  
KYP40337.1 Retrovirus-related Pol polyprotein from transposon TN...   680   0.0  
ACL97384.1 Gag-Pol polyprotein [Medicago truncatula]                  662   0.0  
ACL97386.1 Gag-Pol polyprotein [Medicago truncatula]                  655   0.0  
ACL97383.1 Gag-Pol polyprotein [Medicago truncatula]                  655   0.0  
KYP38095.1 Retrovirus-related Pol polyprotein from transposon TN...   654   0.0  
ACL97385.1 Gag-Pol polyprotein [Medicago truncatula]                  654   0.0  
ACL97387.1 Gag-Pol polyprotein [Lotus japonicus]                      658   0.0  

>AAV88069.1 hypothetical retrotransposon [Ipomoea batatas]
          Length = 1415

 Score =  880 bits (2273), Expect = 0.0
 Identities = 430/678 (63%), Positives = 524/678 (77%), Gaps = 15/678 (2%)
 Frame = -3

Query: 3335 VLDVFKQFQALAERQTGEKLKCLRSDNGGEYIGPMDDYCK*LGIRHQRTQKKTPQLNGVA 3156
            VL VFK+F AL ERQTG+KLKC+R+DNGGEY GP D+YC+  GIRHQ+T  K PQLNG+A
Sbjct: 521  VLGVFKEFHALVERQTGKKLKCIRTDNGGEYCGPFDEYCRRYGIRHQKTPPKIPQLNGLA 580

Query: 3155 ERMNRTLLERIRCMLSEAKLPRQFWGEALFTAAHVINMSPCASLDGDVPDKIWFDKEVFY 2976
            ERMNRT++ER+RCML +AKLP  FW EA+ TA HVIN+SP  +L  +VPDK+W  K+V Y
Sbjct: 581  ERMNRTIMERVRCMLDDAKLPSSFWAEAVSTAVHVINLSPVIALKNEVPDKVWCGKDVSY 640

Query: 2975 SHLRVFGCKAYVHVPNDERSKLDSKTRQCIFVGYGEDQFGYRFYDPVDKKLIRSRDVVFV 2796
             HLRVFGCKA+VHVP DERSKLDSKTRQCIF+GYG D+FGYR YDPV+KKL+RSRDVVF 
Sbjct: 641  DHLRVFGCKAFVHVPRDERSKLDSKTRQCIFIGYGFDEFGYRLYDPVEKKLVRSRDVVFF 700

Query: 2795 EDQTIEDIQKAQETTSHQGYXXXXXXXXXXXXXXXPANEVQGNNFEGNPXXXXXXXXXXX 2616
            E+QTIEDI K ++  S                     +EVQ N   G+P           
Sbjct: 701  ENQTIEDIDKVKQPESRDS-GSLVDIEPVSRRYTDDVDEVQENVQNGDPVPDYQGD---- 755

Query: 2615 DTIETDHHGSPEVQ-----PAPV-----RRSTRDRNPST-----DYILLTDGGESESFRE 2481
             T++ D H    V      P+ V     RRS R+R PST      Y+LLTDGGE ES+ E
Sbjct: 756  -TVDVDGHADDVVHQEQEVPSQVPVDLPRRSDRERRPSTRYSPSQYVLLTDGGEPESYEE 814

Query: 2480 AVESDDKQCLMDVMKEEIKSLHDNHTFDLVKLPKGKKALRNRWVYKQKQDENAKKPRYKA 2301
            A+ESD K+   + M+EE+ SL+ N TF+LVK PK +KAL+NRWVY+ K +E    PR+KA
Sbjct: 815  AMESDQKRQWFEAMQEEMNSLYVNDTFELVKAPKNRKALKNRWVYRVKHEEGTSVPRFKA 874

Query: 2300 RLVVKGCNQKEGIDFEEIFSPVVKMSSIRVILGLASNLDLEIEQLDVKTVFLHGDLEEDI 2121
            RLVVKG +QK+GIDF+EIFSPVVK SSIRV+LGLA+ LD+EIEQ+DVKT FLHGDL+E+I
Sbjct: 875  RLVVKGFSQKKGIDFDEIFSPVVKFSSIRVVLGLAARLDIEIEQMDVKTAFLHGDLDEEI 934

Query: 2120 YMEQPEDFKVSGKEDYVCKLKKSLYGLKQTPRQWYRKFDSFMGEQGYKKTSCDHCVFLKR 1941
            YMEQPE FKV GKEDYVC+LKKSLYGLKQ PRQWY+KF S M + GYKKTS DHCVF+ R
Sbjct: 935  YMEQPEGFKVKGKEDYVCRLKKSLYGLKQAPRQWYKKFTSVMSKHGYKKTSSDHCVFVNR 994

Query: 1940 FDDNDFIILLLYVDDMLIVGQNTNRIVNLKEQLNKTFSMKELGPANQILGIRIIRDRKAR 1761
            + D+DF+ILLLYVDDMLIVG+N +RI  LK++L+K+FSMK++GPA QILG++IIRDR+ +
Sbjct: 995  YSDDDFVILLLYVDDMLIVGRNASRIQELKQELSKSFSMKDMGPAKQILGMKIIRDRQNK 1054

Query: 1760 RLWLSQEAYVNKVLQRFNMEKEKPVSTPLALHFKLSTEQCPSTAEEIKSMQNIPYASAVG 1581
            +LWLSQE Y+ KVL+RF+M + KPVSTPL +HFKL  +QCPS+ +E + MQ +PY+SAVG
Sbjct: 1055 KLWLSQEKYIEKVLERFHMNEAKPVSTPLDMHFKLCKKQCPSSEKEKEEMQRVPYSSAVG 1114

Query: 1580 SLMYAMVCMRPDIAHAVGLVSRFLSNPGKVHWSAVKWIMRYLRATADMKLCFGSDKATLV 1401
            SLMYAMVC RPDIAHAVG+VSRFLSNPG+ HW AVKWI+RYLR T+ + LCFG+ K  L 
Sbjct: 1115 SLMYAMVCTRPDIAHAVGVVSRFLSNPGREHWDAVKWILRYLRGTSSLSLCFGTGKPILT 1174

Query: 1400 GYSDSDMAGDIDSRKFTS 1347
            GY+DSDMAGDID+RK TS
Sbjct: 1175 GYTDSDMAGDIDTRKSTS 1192



 Score =  161 bits (408), Expect = 2e-36
 Identities = 80/122 (65%), Positives = 90/122 (73%)
 Frame = -1

Query: 1342 YMITFAGGAVSWQSRLQKCVALSTTESEFIAATEASKELLWMKRFVRQLGFTQKRYVLYC 1163
            Y+IT+AGGAVSWQSRLQKCV LSTTE+EFIA+ EASKE+LWMK+F+++LGF Q R     
Sbjct: 1194 YLITYAGGAVSWQSRLQKCVDLSTTEAEFIASVEASKEMLWMKKFLQELGFVQDR----- 1248

Query: 1162 DNQSAVHLAKNFTFHAKFKHIDVRYHWIRDVLEAKFLEFHKIHTDDNGSDMMTKALPRGK 983
                              KHID RYHWIRD+LE K LE  KIHTDDNGSDMMTKALPRGK
Sbjct: 1249 -----------------SKHIDTRYHWIRDILECKMLELEKIHTDDNGSDMMTKALPRGK 1291

Query: 982  FE 977
            FE
Sbjct: 1292 FE 1293



 Score =  135 bits (341), Expect = 2e-28
 Identities = 55/82 (67%), Positives = 70/82 (85%)
 Frame = -2

Query: 246 NTSRMISLNGNNYHLWKRKMKDLLYVKSWHLPVFSTDKPEGKTDEQWEFEHEQVCGFIRQ 67
           NTS M+ LNG NYH+WK KMKDLL+VK  HLPVF++ KPE  +DE+W+FEH+QVCG+IRQ
Sbjct: 4   NTSNMVRLNGRNYHIWKAKMKDLLFVKKLHLPVFASAKPENMSDEEWDFEHQQVCGYIRQ 63

Query: 66  WVDDNILNHINDEVHAKTLWQK 1
           WV+DN+LNHI +E HA++LW K
Sbjct: 64  WVEDNVLNHIINETHARSLWNK 85


>BAA11674.1 unnamed protein product [Nicotiana tabacum]
          Length = 1338

 Score =  866 bits (2237), Expect = 0.0
 Identities = 430/696 (61%), Positives = 525/696 (75%), Gaps = 14/696 (2%)
 Frame = -3

Query: 3335 VLDVFKQFQALAERQTGEKLKCLRSDNGGEYIGPMDDYCK*LGIRHQRTQKKTPQLNGVA 3156
            V  VFKQF  L ER+TG+KLKC+R+DNGGEY G  D YCK  GIRHQ T  KTPQLNG+A
Sbjct: 523  VFQVFKQFLTLVERETGKKLKCIRTDNGGEYQGQFDAYCKEHGIRHQFTPPKTPQLNGLA 582

Query: 3155 ERMNRTLLERIRCMLSEAKLPRQFWGEALFTAAHVINMSPCASLDGDVPDKIWFDKEVFY 2976
            ERMNRTL+ER RC+LS +KLP+ FWGEAL TAA+V+N SPC  L    P+KIW  +++ Y
Sbjct: 583  ERMNRTLIERTRCLLSHSKLPKAFWGEALVTAAYVLNHSPCVPLQYKAPEKIWLGRDISY 642

Query: 2975 SHLRVFGCKAYVHVPNDERSKLDSKTRQCIFVGYGEDQFGYRFYDPVDKKLIRSRDVVFV 2796
              LRVFGCKAYVHVP DERSKLD KTR+C+F+GYG+D  GY+FYDPV+KKL+RSRDVVFV
Sbjct: 643  DQLRVFGCKAYVHVPKDERSKLDVKTRECVFIGYGQDMLGYKFYDPVEKKLVRSRDVVFV 702

Query: 2795 EDQTIEDIQKAQETTSHQGYXXXXXXXXXXXXXXXPANEVQGNNFEGNPXXXXXXXXXXX 2616
            EDQTIEDI K +++T                      ++VQ N  E              
Sbjct: 703  EDQTIEDIDKVEKSTDDSA----EFELPPTVVPRQVGDDVQDNQPEAPGLPNEDELADTE 758

Query: 2615 DTIET-DHHGSPEVQPAPV--------RRSTRDRNPST-----DYILLTDGGESESFREA 2478
               +  D     E QP P          RS R    ST     +Y+LLTDGGE +SF EA
Sbjct: 759  GNEDNGDDDADEEDQPQPPILNNPPYHTRSGRVVQQSTRYSPHEYVLLTDGGEPDSFEEA 818

Query: 2477 VESDDKQCLMDVMKEEIKSLHDNHTFDLVKLPKGKKALRNRWVYKQKQDENAKKPRYKAR 2298
            ++ + K+  ++ M++EIKSLH+N TF+LVKLPKGK+AL+N+WV+K K DE+   PR+KAR
Sbjct: 819  IDDEHKEKWIEAMQDEIKSLHENKTFELVKLPKGKRALKNKWVFKMKHDEHNSLPRFKAR 878

Query: 2297 LVVKGCNQKEGIDFEEIFSPVVKMSSIRVILGLASNLDLEIEQLDVKTVFLHGDLEEDIY 2118
            LVVKG NQ++GIDF+EIFSPVVKM+SIR +LGLA++L+LE+EQ+DVKT FLHGDLEE+IY
Sbjct: 879  LVVKGFNQRKGIDFDEIFSPVVKMTSIRTVLGLAASLNLEVEQMDVKTAFLHGDLEEEIY 938

Query: 2117 MEQPEDFKVSGKEDYVCKLKKSLYGLKQTPRQWYRKFDSFMGEQGYKKTSCDHCVFLKRF 1938
            MEQP+ F+  GKEDYVC+L+KSLYGLKQ PRQWY+KF+S MG+ GYKKT+ DHCVF ++F
Sbjct: 939  MEQPDGFQQKGKEDYVCRLRKSLYGLKQAPRQWYKKFESVMGQHGYKKTTSDHCVFAQKF 998

Query: 1937 DDNDFIILLLYVDDMLIVGQNTNRIVNLKEQLNKTFSMKELGPANQILGIRIIRDRKARR 1758
             D+DFIILLLYVDDMLIVG+N +RI +LKEQL+K F+MK+LGPA QILG+RI+RDR+A++
Sbjct: 999  SDDDFIILLLYVDDMLIVGRNVSRINSLKEQLSKFFAMKDLGPAKQILGMRIMRDREAKK 1058

Query: 1757 LWLSQEAYVNKVLQRFNMEKEKPVSTPLALHFKLSTEQCPSTAEEIKSMQNIPYASAVGS 1578
            LWLSQE Y+ KVLQRFNMEK K VS PLA HF+LST+Q PST +E + M+ IPYASAVGS
Sbjct: 1059 LWLSQEKYIEKVLQRFNMEKTKAVSCPLANHFRLSTKQSPSTDDERRKMERIPYASAVGS 1118

Query: 1577 LMYAMVCMRPDIAHAVGLVSRFLSNPGKVHWSAVKWIMRYLRATADMKLCFGSDKATLVG 1398
            LMYAMVC RPDIAHAVG+VSRFLSNPGK HW AVKWI+RYLR T+ + LCFG D   LVG
Sbjct: 1119 LMYAMVCTRPDIAHAVGVVSRFLSNPGKEHWDAVKWILRYLRGTSKLCLCFGEDNPVLVG 1178

Query: 1397 YSDSDMAGDIDSRKFTSVLYDYFCRGSCVLAIKITK 1290
            Y+D+DMAGD+DSRK TS     F  G+     K+ K
Sbjct: 1179 YTDADMAGDVDSRKSTSGYLINFSGGAVSWQSKLQK 1214



 Score =  206 bits (523), Expect = 2e-50
 Identities = 93/130 (71%), Positives = 113/130 (86%)
 Frame = -1

Query: 1342 YMITFAGGAVSWQSRLQKCVALSTTESEFIAATEASKELLWMKRFVRQLGFTQKRYVLYC 1163
            Y+I F+GGAVSWQS+LQKCVALSTTE+EFIAATEA KEL+WMK+F+ +LGF+Q  Y L+C
Sbjct: 1197 YLINFSGGAVSWQSKLQKCVALSTTEAEFIAATEACKELIWMKKFLTELGFSQDGYQLFC 1256

Query: 1162 DNQSAVHLAKNFTFHAKFKHIDVRYHWIRDVLEAKFLEFHKIHTDDNGSDMMTKALPRGK 983
            D+QSA+HLAKN +FH++ KHIDVRY+WIRDVLE K L   KIHTD+NGSDM+TK LP+GK
Sbjct: 1257 DSQSAIHLAKNASFHSRSKHIDVRYNWIRDVLEKKMLRLEKIHTDENGSDMLTKTLPKGK 1316

Query: 982  FEICRSLAGM 953
            FE CR  AG+
Sbjct: 1317 FEFCREAAGI 1326



 Score =  129 bits (323), Expect = 2e-26
 Identities = 53/81 (65%), Positives = 67/81 (82%)
 Frame = -2

Query: 243 TSRMISLNGNNYHLWKRKMKDLLYVKSWHLPVFSTDKPEGKTDEQWEFEHEQVCGFIRQW 64
           TS+M++LNG NYHLW+ KMKDLL+V   HLPVFS+ KPE K+DE WEFEH QVCG+IRQ+
Sbjct: 5   TSKMVNLNGTNYHLWRNKMKDLLFVTKMHLPVFSSQKPEDKSDEDWEFEHNQVCGYIRQF 64

Query: 63  VDDNILNHINDEVHAKTLWQK 1
           V+DN+ NHI+   HA++LW K
Sbjct: 65  VEDNVYNHISGVTHARSLWDK 85


>XP_017609491.1 PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
            1-94 [Gossypium arboreum]
          Length = 1184

 Score =  788 bits (2034), Expect(2) = 0.0
 Identities = 397/670 (59%), Positives = 488/670 (72%), Gaps = 7/670 (1%)
 Frame = -3

Query: 3335 VLDVFKQFQALAERQTGEKLKCLRSDNGGEYIGPMDDYCK*LGIRHQRTQKKTPQLNGVA 3156
            V +VFKQFQA  ER+T +KLKC+R+DNGGEY     +YC   GIRHQRT  KTPQLNG+A
Sbjct: 416  VFEVFKQFQASVERETEKKLKCIRTDNGGEYTRSFHEYCLRQGIRHQRTPPKTPQLNGLA 475

Query: 3155 ERMNRTLLERIRCMLSEAKLPRQFWGEALFTAAHVINMSPCASLDGDVPDKIWFDKEVFY 2976
            ERMNRTL+ER+RC+LS+AKLPR FW EAL T  HVIN+SP   L GDVPD++WF K V Y
Sbjct: 476  ERMNRTLIERVRCLLSDAKLPRSFWAEALNTVTHVINLSPSVPLKGDVPDRVWFVKGVSY 535

Query: 2975 SHLRVFGCKAYVHVPNDERSKLDSKTRQCIFVGYGEDQFGYRFYDPVDKKLIRSRDVVFV 2796
             HLRVFGCK +VH                                   KKL+RSRDVVF+
Sbjct: 536  DHLRVFGCKVFVH-----------------------------------KKLVRSRDVVFI 560

Query: 2795 EDQTIEDIQKAQETTSH-QGYXXXXXXXXXXXXXXXPANEVQGNNFEGNPXXXXXXXXXX 2619
            EDQTI+DI K ++  S   G                  ++V G+                
Sbjct: 561  EDQTIDDIDKTEKVDSQGSGDLIDVNPVPLDSSPDPIQDDVHGD--VSGDHQTIGDFATP 618

Query: 2618 XDTIETDHHGSPEVQPA-PVRRSTRDRNPST-----DYILLTDGGESESFREAVESDDKQ 2457
             D +  D   +P   PA P+RRS+RDR  S      +Y+LLTDGGE   + EA+ES+ K 
Sbjct: 619  IDDVVNDQQQAPIAPPAVPLRRSSRDRRSSVKYSPDEYVLLTDGGEPGCYEEAMESECKD 678

Query: 2456 CLMDVMKEEIKSLHDNHTFDLVKLPKGKKALRNRWVYKQKQDENAKKPRYKARLVVKGCN 2277
              ++ MK++++SLH+NHTF+LVKLPKGK+AL+NRWVY+ KQ+E +  PRYKARLVVKG  
Sbjct: 679  QWVEAMKDKLQSLHENHTFELVKLPKGKRALKNRWVYRLKQEEKSSSPRYKARLVVKGYT 738

Query: 2276 QKEGIDFEEIFSPVVKMSSIRVILGLASNLDLEIEQLDVKTVFLHGDLEEDIYMEQPEDF 2097
            QK+G+DFEEIFSPVVKMSSIR IL LA+  DLE+EQ+DVK  FLHGDLE+++YMEQPE F
Sbjct: 739  QKKGVDFEEIFSPVVKMSSIRTILSLAACYDLEVEQMDVKIAFLHGDLEDELYMEQPEGF 798

Query: 2096 KVSGKEDYVCKLKKSLYGLKQTPRQWYRKFDSFMGEQGYKKTSCDHCVFLKRFDDNDFII 1917
                KEDYVC+LKKSLYGLKQ PRQWY+KF+S MGEQ YKKT+ DHCVF+K+F  +DFII
Sbjct: 799  VAQRKEDYVCRLKKSLYGLKQAPRQWYKKFESVMGEQSYKKTTSDHCVFVKKFSGDDFII 858

Query: 1916 LLLYVDDMLIVGQNTNRIVNLKEQLNKTFSMKELGPANQILGIRIIRDRKARRLWLSQEA 1737
            LLLYVDDMLIVGQN +RI  LK++L+K+F+MK+LGPA QILGIR+ RDRKA++LWLSQE 
Sbjct: 859  LLLYVDDMLIVGQNASRIEKLKQELSKSFAMKDLGPAKQILGIRLTRDRKAKKLWLSQER 918

Query: 1736 YVNKVLQRFNMEKEKPVSTPLALHFKLSTEQCPSTAEEIKSMQNIPYASAVGSLMYAMVC 1557
            Y+ KVLQ+F+M+K K V+TP A+HF+LS +  PST +E + MQ IPY+SAVGSLMYAMVC
Sbjct: 919  YIEKVLQKFSMDKAKAVNTPFAMHFRLSVKHSPSTEKEKEEMQKIPYSSAVGSLMYAMVC 978

Query: 1556 MRPDIAHAVGLVSRFLSNPGKVHWSAVKWIMRYLRATADMKLCFGSDKATLVGYSDSDMA 1377
             RPD+A+AVG VSRFLSN G+ HW+AVKWIMRYLR T++MKLCFG++K   VGY+DSDMA
Sbjct: 979  TRPDLAYAVGTVSRFLSNLGREHWNAVKWIMRYLRGTSNMKLCFGNEKPVTVGYTDSDMA 1038

Query: 1376 GDIDSRKFTS 1347
            GDIDSR+ TS
Sbjct: 1039 GDIDSRRSTS 1048



 Score =  221 bits (563), Expect(2) = 0.0
 Identities = 102/132 (77%), Positives = 119/132 (90%)
 Frame = -1

Query: 1342 YMITFAGGAVSWQSRLQKCVALSTTESEFIAATEASKELLWMKRFVRQLGFTQKRYVLYC 1163
            Y+IT+AGGAV+WQSR QKCVALSTTESEFIAATEA KE+LWMK+FV++LGFTQ++YVLYC
Sbjct: 1050 YLITYAGGAVAWQSRQQKCVALSTTESEFIAATEACKEMLWMKKFVQELGFTQEKYVLYC 1109

Query: 1162 DNQSAVHLAKNFTFHAKFKHIDVRYHWIRDVLEAKFLEFHKIHTDDNGSDMMTKALPRGK 983
            D+QSA+HL+KN TFHA+ KHIDVRYHWIRDVLEAK LE  KIHT+DNG+DM+TK LPRGK
Sbjct: 1110 DSQSAIHLSKNSTFHARSKHIDVRYHWIRDVLEAKLLELEKIHTNDNGADMLTKVLPRGK 1169

Query: 982  FEICRSLAGMAA 947
            FE C   +GM A
Sbjct: 1170 FEACCLTSGMEA 1181


>CAN75440.1 hypothetical protein VITISV_007304 [Vitis vinifera]
          Length = 1362

 Score =  798 bits (2061), Expect(2) = 0.0
 Identities = 397/688 (57%), Positives = 500/688 (72%), Gaps = 25/688 (3%)
 Frame = -3

Query: 3335 VLDVFKQFQALAERQTGEKLKCLRSDNGGEYIGPMDDYCK*LGIRHQRTQKKTPQLNGVA 3156
            VLDVFKQF AL ERQ+GEKLKC+R+DNGGEY GP D+YC+  G RHQ+T  KTPQLNG+A
Sbjct: 503  VLDVFKQFHALVERQSGEKLKCIRTDNGGEYSGPFDEYCRQHGFRHQKTPPKTPQLNGLA 562

Query: 3155 ERMNRTLLERIRCMLSEAKLPRQFWGEALFTAAHVINMSPCASLDGDVPDKIWFDKEVFY 2976
            ERMNRTL+ER+RC+LS+++LPR FWGEAL T  HV+N++PC  L+ DVPD+IW + E+ Y
Sbjct: 563  ERMNRTLVERVRCLLSQSQLPRSFWGEALNTIVHVLNLTPCVPLEFDVPDRIWSNNEISY 622

Query: 2975 SHLRVFGCKAYVHVPNDERSKLDSKTRQCIFVGYGEDQFGYRFYDPVDKKLIRSRDVVFV 2796
             HLRVFGCKA+VH+P DERSKLD+KTR C+F+GYG+D+ GY+FYD V KKL RS DVVF+
Sbjct: 623  DHLRVFGCKAFVHIPKDERSKLDAKTRPCVFIGYGQDELGYKFYDLVQKKLXRSXDVVFM 682

Query: 2795 EDQTIEDIQKAQETTS-HQGYXXXXXXXXXXXXXXXPANEVQGNNF-------------E 2658
            ED TI+DI+K     S H G                  +    +               E
Sbjct: 683  EDHTIQDIEKTNPMESQHSGDLIDLDPAPLTNLPTQVEDGAHDDQHDMGDVETPTQVEDE 742

Query: 2657 GNPXXXXXXXXXXXDTIETD---HHGSPEVQPA---PVRRSTRDRNPST-----DYILLT 2511
             +              +E D   H  SP  +     P+RRSTRDR+PST     DY+LLT
Sbjct: 743  THDDQHDMGDVETPTQVEVDDDVHEQSPTAEAPSDIPLRRSTRDRHPSTRYSVDDYVLLT 802

Query: 2510 DGGESESFREAVESDDKQCLMDVMKEEIKSLHDNHTFDLVKLPKGKKALRNRWVYKQKQD 2331
            D GE ES+ EA++ ++K   +D M++E++SLH+NH+F+LVKLPKGK+AL+NRWVY+ KQ+
Sbjct: 803  DEGEPESYVEAMKDENKMKWVDAMRDEMESLHENHSFELVKLPKGKRALKNRWVYRVKQE 862

Query: 2330 ENAKKPRYKARLVVKGCNQKEGIDFEEIFSPVVKMSSIRVILGLASNLDLEIEQLDVKTV 2151
            E+  +PRYKARLVVK    KE                         + DLEI+Q+DVKT 
Sbjct: 863  EHTSQPRYKARLVVKRVQSKE-------------------------SFDLEIQQMDVKTA 897

Query: 2150 FLHGDLEEDIYMEQPEDFKVSGKEDYVCKLKKSLYGLKQTPRQWYRKFDSFMGEQGYKKT 1971
            FLHGDL+++IYMEQPE F + GKEDYVCKLKKSLYGLKQ PRQWY+KF+S MGEQGY+KT
Sbjct: 898  FLHGDLDKEIYMEQPEGFVLKGKEDYVCKLKKSLYGLKQAPRQWYKKFESVMGEQGYRKT 957

Query: 1970 SCDHCVFLKRFDDNDFIILLLYVDDMLIVGQNTNRIVNLKEQLNKTFSMKELGPANQILG 1791
            + DHCVF+++F D+DF+ILLLYVDD+LIV +N +RI NLK+QL+K+F+MK+LGP  +ILG
Sbjct: 958  TSDHCVFVQKFSDDDFVILLLYVDDILIVCRNVSRIDNLKKQLSKSFAMKDLGPVKRILG 1017

Query: 1790 IRIIRDRKARRLWLSQEAYVNKVLQRFNMEKEKPVSTPLALHFKLSTEQCPSTAEEIKSM 1611
            IRI RDR +++L + QE Y+ KV  RFNM K K VS+PLA HFKLS+   PST +E + M
Sbjct: 1018 IRIERDRASKKLCMLQEQYIEKVFARFNMSKFKVVSSPLASHFKLSSRHSPSTDKEKEDM 1077

Query: 1610 QNIPYASAVGSLMYAMVCMRPDIAHAVGLVSRFLSNPGKVHWSAVKWIMRYLRATADMKL 1431
            + +PYASA+GSLMYAMVC RPDIA+AVG+VSRFLSNPG+ HW AVKWIMRYLR T+ +KL
Sbjct: 1078 RRVPYASAIGSLMYAMVCTRPDIAYAVGVVSRFLSNPGRHHWEAVKWIMRYLRGTSKLKL 1137

Query: 1430 CFGSDKATLVGYSDSDMAGDIDSRKFTS 1347
             FGS K  LVGY+DSDMAGD+D+RK TS
Sbjct: 1138 TFGSGKPILVGYTDSDMAGDVDNRKSTS 1165



 Score =  203 bits (517), Expect(2) = 0.0
 Identities = 92/133 (69%), Positives = 113/133 (84%)
 Frame = -1

Query: 1342 YMITFAGGAVSWQSRLQKCVALSTTESEFIAATEASKELLWMKRFVRQLGFTQKRYVLYC 1163
            Y++TF+GGAVSWQSRLQKCVALSTTE+E+IAA EA KELLWMK F+++LGF Q+RYV+YC
Sbjct: 1167 YLMTFSGGAVSWQSRLQKCVALSTTEAEYIAAVEACKELLWMKCFMQELGFKQQRYVVYC 1226

Query: 1162 DNQSAVHLAKNFTFHAKFKHIDVRYHWIRDVLEAKFLEFHKIHTDDNGSDMMTKALPRGK 983
            DNQSA+HL+KN T+HA+ KHIDVRYHW+RD L     E  KIHTD+NGSDM+TK LPR K
Sbjct: 1227 DNQSAIHLSKNSTYHARSKHIDVRYHWMRDALNDNLFEIEKIHTDNNGSDMLTKTLPREK 1286

Query: 982  FEICRSLAGMAAN 944
              +C S+AGM ++
Sbjct: 1287 LGVCCSIAGMISS 1299



 Score = 89.7 bits (221), Expect = 2e-14
 Identities = 35/63 (55%), Positives = 48/63 (76%)
 Frame = -2

Query: 189 MKDLLYVKSWHLPVFSTDKPEGKTDEQWEFEHEQVCGFIRQWVDDNILNHINDEVHAKTL 10
           M+DLLYVK ++L VF +++PE KTD +W   H QVCG+IR WVDDN LNH+++E H ++ 
Sbjct: 1   MEDLLYVKDYYLXVFXSERPENKTDAEWNLLHRQVCGYIRXWVDDNXLNHVSEEKHXRSX 60

Query: 9   WQK 1
           W K
Sbjct: 61  WNK 63


>KYP31853.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1314

 Score =  788 bits (2035), Expect(2) = 0.0
 Identities = 388/686 (56%), Positives = 502/686 (73%), Gaps = 13/686 (1%)
 Frame = -3

Query: 3335 VLDVFKQFQALAERQTGEKLKCLRSDNGGEYIGPMDDYCK*LGIRHQRTQKKTPQLNGVA 3156
            VL  FK+F AL ER TG KLKC+R+DNGGEY+GP + YCK  GIRH++   KTPQ+NGVA
Sbjct: 519  VLQAFKEFHALVERATGRKLKCIRTDNGGEYLGPFEYYCKTHGIRHEKVPPKTPQMNGVA 578

Query: 3155 ERMNRTLLERIRCMLSEAKLPRQFWGEALFTAAHVINMSPCASLDGDVPDKIWFDKEVFY 2976
            ERMNRT+ E++R MLS AK+P+ FWGEA+ TAA +IN+SP   L+G++P+++W  K+ +Y
Sbjct: 579  ERMNRTIAEKVRSMLSHAKIPKSFWGEAVLTAADLINLSPSRPLNGEIPEEVWSGKKAYY 638

Query: 2975 SHLRVFGCKAYVHVPNDERSKLDSKTRQCIFVGYGEDQFGYRFYDPVDKKLIRSRDVVFV 2796
             HL+VFGC+A+VH+P DER+KLD+K ++CI++   +D+ G+R +DPV+KK++RSRDV+F 
Sbjct: 639  GHLKVFGCRAFVHIPKDERTKLDAKVKECIYLRSPKDELGFRLWDPVNKKIVRSRDVIFF 698

Query: 2795 EDQTIEDIQKAQETTSHQGYXXXXXXXXXXXXXXXPANEVQGNNFEGN-------PXXXX 2637
            EDQTI+DI+K ++    +                  ++ +  NN  G        P    
Sbjct: 699  EDQTIQDIKKPEKPKQKE---------------VQDSSPIVINNSGGEISQRIDEPNQTE 743

Query: 2636 XXXXXXXDTIETDH-HGSPEVQPAPVRRSTRDRNPST-----DYILLTDGGESESFREAV 2475
                    T++ +    + E Q   VRRS R R PS      DY+ LTD GE +SF EA+
Sbjct: 744  QPESEQSQTMQEEQMETNQEEQEPEVRRSMRVRQPSKRYFSDDYVNLTDEGEPQSFIEAI 803

Query: 2474 ESDDKQCLMDVMKEEIKSLHDNHTFDLVKLPKGKKALRNRWVYKQKQDENAKKPRYKARL 2295
            E +DK+  +  M+EE++SL +N T++LV+LP+G+KAL+N+WV+K K +EN  KPRYKAR+
Sbjct: 804  EMNDKEKWLQAMEEELQSLKENETYELVELPQGRKALKNKWVFKLKTEENNTKPRYKARI 863

Query: 2294 VVKGCNQKEGIDFEEIFSPVVKMSSIRVILGLASNLDLEIEQLDVKTVFLHGDLEEDIYM 2115
            VVKGCNQK+GIDFEEIFSPVVKM+SIR ILGLA+ LDLEIEQLDVKT FLHGDLEE+IYM
Sbjct: 864  VVKGCNQKKGIDFEEIFSPVVKMTSIRAILGLAAKLDLEIEQLDVKTAFLHGDLEEEIYM 923

Query: 2114 EQPEDFKVSGKEDYVCKLKKSLYGLKQTPRQWYRKFDSFMGEQGYKKTSCDHCVFLKRFD 1935
            EQPE F   GKE  VC+LKKSLYGLKQ PRQWY+KFD FM +  +KKTS D CVF+K ++
Sbjct: 924  EQPEGFAEPGKEHLVCRLKKSLYGLKQAPRQWYKKFDLFMAQHNFKKTSADQCVFVKNYE 983

Query: 1934 DNDFIILLLYVDDMLIVGQNTNRIVNLKEQLNKTFSMKELGPANQILGIRIIRDRKARRL 1755
            + + IILLLYVDDMLIVG++  +I  LK+ L+K+F+MK+LG   +ILG++IIRDR  R L
Sbjct: 984  NGESIILLLYVDDMLIVGKDKTKIAALKKALSKSFAMKDLGSVKKILGMKIIRDRSKRML 1043

Query: 1754 WLSQEAYVNKVLQRFNMEKEKPVSTPLALHFKLSTEQCPSTAEEIKSMQNIPYASAVGSL 1575
            W+SQE Y+ KVL+RFNM   K V  PL  H KLS +QCP   EE + M  +PY+SAVGSL
Sbjct: 1044 WMSQEDYIKKVLERFNMHNAKSVHVPLPGHLKLSKKQCP-VNEEKEEMSKVPYSSAVGSL 1102

Query: 1574 MYAMVCMRPDIAHAVGLVSRFLSNPGKVHWSAVKWIMRYLRATADMKLCFGSDKATLVGY 1395
            MYAMVC RPDIA+AVG+VSRFLSNPGK HW+AVKWI+RYL+ TA   LCFG+    L GY
Sbjct: 1103 MYAMVCTRPDIAYAVGVVSRFLSNPGKEHWNAVKWILRYLKGTAKSCLCFGNGNLMLTGY 1162

Query: 1394 SDSDMAGDIDSRKFTSVLYDYFCRGS 1317
            SD+DMAGD+DSRK TS     F  G+
Sbjct: 1163 SDADMAGDVDSRKSTSGYLITFAGGA 1188



 Score =  209 bits (533), Expect(2) = 0.0
 Identities = 93/132 (70%), Positives = 117/132 (88%)
 Frame = -1

Query: 1342 YMITFAGGAVSWQSRLQKCVALSTTESEFIAATEASKELLWMKRFVRQLGFTQKRYVLYC 1163
            Y+ITFAGGA+SWQSRLQKC+ALSTTE+EFIA TE  KE+LWMK+F+++LG  Q+ YVLYC
Sbjct: 1180 YLITFAGGAISWQSRLQKCIALSTTEAEFIAITEGCKEILWMKKFLQELGQDQESYVLYC 1239

Query: 1162 DNQSAVHLAKNFTFHAKFKHIDVRYHWIRDVLEAKFLEFHKIHTDDNGSDMMTKALPRGK 983
            D+QSA+HL+KN TFH++ KHIDVRYHWIRDVLE+K L+  KIHT DNG+DMMTK+LPR K
Sbjct: 1240 DSQSAIHLSKNSTFHSRSKHIDVRYHWIRDVLESKMLKIEKIHTKDNGADMMTKSLPREK 1299

Query: 982  FEICRSLAGMAA 947
             E+C+ +AG+A+
Sbjct: 1300 IEVCKEVAGLAS 1311



 Score = 67.4 bits (163), Expect = 2e-07
 Identities = 28/78 (35%), Positives = 44/78 (56%)
 Frame = -2

Query: 234 MISLNGNNYHLWKRKMKDLLYVKSWHLPVFSTDKPEGKTDEQWEFEHEQVCGFIRQWVDD 55
           M  L  +N+  WK  M+D LY K  + P+    KPEGKTD+ WE  + +    IR+++D 
Sbjct: 1   MFKLTADNFSYWKPMMEDHLYCKDLYEPITQQSKPEGKTDKDWEILNRKAVAVIRKYIDR 60

Query: 54  NILNHINDEVHAKTLWQK 1
           ++  H++   +A  LW K
Sbjct: 61  SLFEHVSTYTNAYELWTK 78


>CAN66323.1 hypothetical protein VITISV_007384 [Vitis vinifera]
          Length = 1317

 Score =  775 bits (2001), Expect(2) = 0.0
 Identities = 393/698 (56%), Positives = 495/698 (70%), Gaps = 25/698 (3%)
 Frame = -3

Query: 3335 VLDVFKQFQALAERQTGEKLKCLRSDNGGEYIGPMDDYCK*LGIRHQRTQKKTPQLNGVA 3156
            VLDVFKQF AL ERQ+GEKLKC+R+DNGGEY GP D+YC+   IRHQ+T  KTPQLNG+A
Sbjct: 474  VLDVFKQFHALVERQSGEKLKCIRTDNGGEYSGPFDEYCRQHDIRHQKTPPKTPQLNGLA 533

Query: 3155 ERMNRTLLERIRCMLSEAKLPRQFWGEALFTAAHVINMSPCASLDGDVPDKIWFDKEVFY 2976
            ERMNRTL+ER+RC+LS+++LPR FW EAL T  HV+N++PC  L+ DV D+IW + E+ Y
Sbjct: 534  ERMNRTLVERVRCLLSQSQLPRSFWDEALNTVVHVLNLTPCVPLEFDVSDRIWSNNEISY 593

Query: 2975 SHLRVFGCKAYVHVPNDERSKLDSKTRQCIFVGYGEDQFGYRFYDPVDKKLIRSRDVVFV 2796
             HLRVFGCKA+VH+P DERSKLD KTR C+F+GYG+D+ GYRFYDPV KKL+RSRDVVF+
Sbjct: 594  DHLRVFGCKAFVHIPKDERSKLDVKTRPCVFIGYGQDELGYRFYDPVQKKLVRSRDVVFM 653

Query: 2795 EDQTIEDIQKAQETTS-HQGYXXXXXXXXXXXXXXXPANEVQGNNF-------------E 2658
            ED TI+DI+K     S H G                  +E   +               E
Sbjct: 654  EDHTIQDIEKTNPMESQHSGDLIDLDLAPLKNLPTQVEDEAHDDQHDMGDVETPTQVEDE 713

Query: 2657 GNPXXXXXXXXXXXDTIETD---HHGSPEVQ---PAPVRRSTRDRNPST-----DYILLT 2511
             +              +E D   H  SP  +     P+RR TRDR+PST     DY+LLT
Sbjct: 714  THDDQHDMGDVEIPTQVEVDDDVHEQSPAAEAPSDIPLRRFTRDRHPSTRYSVDDYVLLT 773

Query: 2510 DGGESESFREAVESDDKQCLMDVMKEEIKSLHDNHTFDLVKLPKGKKALRNRWVYKQKQD 2331
            DG E ES+ EA++ ++K   +D M++E++SLH+NH+F+LVKLPKGK+ L+NRWVY+ KQ+
Sbjct: 774  DGEEPESYVEAMKDENKMKWVDXMRDEMESLHENHSFELVKLPKGKRXLKNRWVYRVKQE 833

Query: 2330 ENAKKPRYKARLVVKGCNQKEGIDFEEIFSPVVKMSSIRVILGLASNLDLEIEQLDVKTV 2151
            E+  +PRYKARLVVKG NQK+GIDF+EIFSPVVKMSSIRV+LGLA++LDLEI+Q+DVKT 
Sbjct: 834  EHTSQPRYKARLVVKGFNQKKGIDFDEIFSPVVKMSSIRVVLGLAASLDLEIQQMDVKTA 893

Query: 2150 FLHGDLEEDIYMEQPEDFKVSGKEDYVCKLKKSLYGLKQTPRQWYRKFDSFMGEQGYKKT 1971
            FLHGDL+++IYMEQPE F + GKEDYVCKLKKSLYGLKQ PRQWY+KF+S MGE      
Sbjct: 894  FLHGDLDKEIYMEQPEGFVLKGKEDYVCKLKKSLYGLKQAPRQWYKKFESVMGE------ 947

Query: 1970 SCDHCVFLKRFDDNDFIILLLYVDDMLIVGQNTNRIVNLKEQLNKTFSMKELGPANQILG 1791
                                           N +RI NLK+QL+K+F+MK+LGP  +ILG
Sbjct: 948  -------------------------------NVSRIDNLKKQLSKSFAMKDLGPVKRILG 976

Query: 1790 IRIIRDRKARRLWLSQEAYVNKVLQRFNMEKEKPVSTPLALHFKLSTEQCPSTAEEIKSM 1611
            IRI RDR +++L + Q+ Y+ KVL +FNM K K VS+PLA HFKLS+   PST +E + M
Sbjct: 977  IRIERDRASKKLCMLQKQYIEKVLAKFNMSKAKVVSSPLASHFKLSSRHNPSTDKEKEDM 1036

Query: 1610 QNIPYASAVGSLMYAMVCMRPDIAHAVGLVSRFLSNPGKVHWSAVKWIMRYLRATADMKL 1431
            + + YAS VGSL+Y MVC+RPDIA+AVG+VSRFLSNPG+ HW AVKWIMRYLR  + +KL
Sbjct: 1037 RRVLYASVVGSLIYVMVCIRPDIAYAVGVVSRFLSNPGRHHWEAVKWIMRYLRGISKLKL 1096

Query: 1430 CFGSDKATLVGYSDSDMAGDIDSRKFTSVLYDYFCRGS 1317
             FGS K  LVGY+DSDMAGD+D+R+ TS     F  G+
Sbjct: 1097 TFGSGKPILVGYTDSDMAGDVDNRRSTSSYLMTFSGGA 1134



 Score =  197 bits (501), Expect(2) = 0.0
 Identities = 89/133 (66%), Positives = 111/133 (83%)
 Frame = -1

Query: 1342 YMITFAGGAVSWQSRLQKCVALSTTESEFIAATEASKELLWMKRFVRQLGFTQKRYVLYC 1163
            Y++TF+GGAVSWQSRLQKCVALSTTE+E+IAA EA KELLWMK F+++L F Q+RYV+YC
Sbjct: 1126 YLMTFSGGAVSWQSRLQKCVALSTTEAEYIAAAEACKELLWMKCFMQELXFKQQRYVVYC 1185

Query: 1162 DNQSAVHLAKNFTFHAKFKHIDVRYHWIRDVLEAKFLEFHKIHTDDNGSDMMTKALPRGK 983
            DNQ+A+HL+KN  +HA+ KHIDVRYHW+RD L     E  KIHTD+NGSDM+TK LPR K
Sbjct: 1186 DNQNAIHLSKNSXYHARSKHIDVRYHWMRDALNNNLFEIEKIHTDNNGSDMLTKTLPREK 1245

Query: 982  FEICRSLAGMAAN 944
              +C S+AGM ++
Sbjct: 1246 LGVCCSIAGMISS 1258



 Score = 97.1 bits (240), Expect = 1e-16
 Identities = 37/63 (58%), Positives = 52/63 (82%)
 Frame = -2

Query: 189 MKDLLYVKSWHLPVFSTDKPEGKTDEQWEFEHEQVCGFIRQWVDDNILNHINDEVHAKTL 10
           M+DLLYVK ++ PVF++++PE K D +W   H QVCG+IRQWVDDN+LNH+++E HA++L
Sbjct: 1   MEDLLYVKDYYXPVFASERPENKXDAEWNLLHRQVCGYIRQWVDDNVLNHVSEEKHARSL 60

Query: 9   WQK 1
           W K
Sbjct: 61  WNK 63


>KYP76811.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1305

 Score =  806 bits (2081), Expect = 0.0
 Identities = 394/689 (57%), Positives = 512/689 (74%), Gaps = 7/689 (1%)
 Frame = -3

Query: 3335 VLDVFKQFQALAERQTGEKLKCLRSDNGGEYIGPMDDYCK*LGIRHQRTQKKTPQLNGVA 3156
            VLD FK+F AL ER+TG K+KC+RSDNGGEY GP + YCK  GIR ++T  KTPQLNG+A
Sbjct: 509  VLDAFKEFHALVERETGRKIKCVRSDNGGEYRGPFETYCKKHGIRLEKTPPKTPQLNGLA 568

Query: 3155 ERMNRTLLERIRCMLSEAKLPRQFWGEALFTAAHVINMSPCASLDGDVPDKIWFDKEVFY 2976
            ERMNRT+ ER+RC+LS AKLP+ FWGEA+     ++N++P   L G +PD++W  K   Y
Sbjct: 569  ERMNRTIEERVRCVLSHAKLPKLFWGEAIMAVVDIVNLTPSVPLGGAIPDEVWTGKRASY 628

Query: 2975 SHLRVFGCKAYVHVPNDERSKLDSKTRQCIFVGYGEDQFGYRFYDPVDKKLIRSRDVVFV 2796
            +HL+VFGC+A+VH+P DER+KLD+KT++CI++   +D+FGYR +DP++KK++RSRDVVF 
Sbjct: 629  NHLKVFGCRAFVHIPKDERAKLDAKTKECIYLRSPKDEFGYRLWDPINKKVVRSRDVVFF 688

Query: 2795 EDQTIEDIQKAQETTSHQGYXXXXXXXXXXXXXXXPANEVQGNNF--EGNPXXXXXXXXX 2622
            EDQTIEDI+ +++    +                   NE   +N   E  P         
Sbjct: 689  EDQTIEDIKNSEKPRLRKSTELTPVQHEN--------NETHQDNDPEEDEPVLEQSNQET 740

Query: 2621 XXDTIETDHHGSPEVQPAPVRRSTRDRNPST-----DYILLTDGGESESFREAVESDDKQ 2457
              +  + D   S    P P RRS+R+R PST     +Y++LTD GE +S++EA++   K+
Sbjct: 741  HDEPAQEDPQSSSLPAPEP-RRSSRERRPSTWYNTEEYVMLTDEGEPQSYKEAIKDIHKE 799

Query: 2456 CLMDVMKEEIKSLHDNHTFDLVKLPKGKKALRNRWVYKQKQDENAKKPRYKARLVVKGCN 2277
                 M+EE++SLH+NHT++LV+LPKG++AL+N+WVY+ K ++N  KPRYKARLVVKG  
Sbjct: 800  EWRKAMQEEMQSLHENHTYELVELPKGRRALKNKWVYRIKTEDNNTKPRYKARLVVKGFG 859

Query: 2276 QKEGIDFEEIFSPVVKMSSIRVILGLASNLDLEIEQLDVKTVFLHGDLEEDIYMEQPEDF 2097
            Q++GIDFEEIFSPVVKMSSIRVILG+A+  DLEIEQLDVKT FLHGDLEE+IYMEQPE F
Sbjct: 860  QEKGIDFEEIFSPVVKMSSIRVILGIAATQDLEIEQLDVKTAFLHGDLEEEIYMEQPEGF 919

Query: 2096 KVSGKEDYVCKLKKSLYGLKQTPRQWYRKFDSFMGEQGYKKTSCDHCVFLKRFDDNDFII 1917
            KV GKE+ VC+L KSLYGLKQ PRQWY+KF+SFM E  +KKT  DHCVF+KR+   DF+I
Sbjct: 920  KVPGKENLVCRLTKSLYGLKQAPRQWYKKFESFMAEHEFKKTESDHCVFIKRYASGDFLI 979

Query: 1916 LLLYVDDMLIVGQNTNRIVNLKEQLNKTFSMKELGPANQILGIRIIRDRKARRLWLSQEA 1737
            LLLYVDDMLI GQ+  +I  LK+ L+K+F+MK+LGPA QILG+RI RDR  R LWLSQE 
Sbjct: 980  LLLYVDDMLIFGQDRIKIAALKKDLSKSFAMKDLGPAKQILGMRITRDRSKRLLWLSQER 1039

Query: 1736 YVNKVLQRFNMEKEKPVSTPLALHFKLSTEQCPSTAEEIKSMQNIPYASAVGSLMYAMVC 1557
            Y+ KVL++FNM+K KPV+TPLA HF+LS++Q P++  E++ M+ IPY+S VGSLMYAM+C
Sbjct: 1040 YIEKVLEQFNMDKCKPVNTPLAGHFRLSSKQSPTSEREMEEMKKIPYSSVVGSLMYAMIC 1099

Query: 1556 MRPDIAHAVGLVSRFLSNPGKVHWSAVKWIMRYLRATADMKLCFGSDKATLVGYSDSDMA 1377
             RPDIA+AVG+VSRFL++PG  HW AVKWI+RYLR T+   LCFG  K  L GY+D+D+A
Sbjct: 1100 TRPDIAYAVGVVSRFLADPGNEHWLAVKWILRYLRGTSKRCLCFGKGKPVLQGYTDADLA 1159

Query: 1376 GDIDSRKFTSVLYDYFCRGSCVLAIKITK 1290
            GDIDSRK TS     F  G+     K+ K
Sbjct: 1160 GDIDSRKSTSGYLTTFAGGAVSWQSKLQK 1188



 Score =  186 bits (472), Expect = 3e-44
 Identities = 87/130 (66%), Positives = 105/130 (80%)
 Frame = -1

Query: 1342 YMITFAGGAVSWQSRLQKCVALSTTESEFIAATEASKELLWMKRFVRQLGFTQKRYVLYC 1163
            Y+ TFAGGAVSWQS+LQKCVALSTTE+E+IAATEA KE+LWMK  + +LG  Q+RYV+ C
Sbjct: 1171 YLTTFAGGAVSWQSKLQKCVALSTTEAEYIAATEACKEMLWMKNMLLELGVEQERYVVKC 1230

Query: 1162 DNQSAVHLAKNFTFHAKFKHIDVRYHWIRDVLEAKFLEFHKIHTDDNGSDMMTKALPRGK 983
            DNQSA++LAKN  FH++ KHID RYHWIR+VLE K L   K+HTD+N SDMMTK +P  K
Sbjct: 1231 DNQSAIYLAKNSKFHSRTKHIDTRYHWIREVLEEKKLHLDKVHTDENWSDMMTKVIPTKK 1290

Query: 982  FEICRSLAGM 953
            FE C   AG+
Sbjct: 1291 FEDCCQGAGL 1300



 Score = 71.6 bits (174), Expect = 8e-09
 Identities = 31/88 (35%), Positives = 48/88 (54%)
 Frame = -2

Query: 264 MDSSNINTSRMISLNGNNYHLWKRKMKDLLYVKSWHLPVFSTDKPEGKTDEQWEFEHEQV 85
           M+ +  +   M  L  NNY  WK  M+D LY K  H P+   +K EGK+D QWE  + + 
Sbjct: 1   MEDNVAHDGDMFKLTANNYSYWKPMMEDHLYCKDLHEPIIYKEKVEGKSDAQWELLNRKA 60

Query: 84  CGFIRQWVDDNILNHINDEVHAKTLWQK 1
              IR+++D ++  H++   +A  LW K
Sbjct: 61  VAMIRKYIDKSLFEHVSTYTNAYELWAK 88


>KYP76810.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1305

 Score =  806 bits (2081), Expect = 0.0
 Identities = 394/689 (57%), Positives = 512/689 (74%), Gaps = 7/689 (1%)
 Frame = -3

Query: 3335 VLDVFKQFQALAERQTGEKLKCLRSDNGGEYIGPMDDYCK*LGIRHQRTQKKTPQLNGVA 3156
            VLD FK+F AL ER+TG K+KC+RSDNGGEY GP + YCK  GIR ++T  KTPQLNG+A
Sbjct: 509  VLDAFKEFHALVERETGRKIKCVRSDNGGEYRGPFETYCKKHGIRLEKTPPKTPQLNGLA 568

Query: 3155 ERMNRTLLERIRCMLSEAKLPRQFWGEALFTAAHVINMSPCASLDGDVPDKIWFDKEVFY 2976
            ERMNRT+ ER+RC+LS AKLP+ FWGEA+     ++N++P   L G +PD++W  K   Y
Sbjct: 569  ERMNRTIEERVRCVLSHAKLPKLFWGEAIMAVVDIVNLTPSVPLGGAIPDEVWTGKRASY 628

Query: 2975 SHLRVFGCKAYVHVPNDERSKLDSKTRQCIFVGYGEDQFGYRFYDPVDKKLIRSRDVVFV 2796
            +HL+VFGC+A+VH+P DER+KLD+KT++CI++   +D+FGYR +DP++KK++RSRDVVF 
Sbjct: 629  NHLKVFGCRAFVHIPKDERAKLDAKTKECIYLRSPKDEFGYRLWDPINKKVVRSRDVVFF 688

Query: 2795 EDQTIEDIQKAQETTSHQGYXXXXXXXXXXXXXXXPANEVQGNNF--EGNPXXXXXXXXX 2622
            EDQTIEDI+ +++    +                   NE   +N   E  P         
Sbjct: 689  EDQTIEDIKNSEKPRLRKSTELTPVQHEN--------NETHQDNDPEEDEPVLEQSNQET 740

Query: 2621 XXDTIETDHHGSPEVQPAPVRRSTRDRNPST-----DYILLTDGGESESFREAVESDDKQ 2457
              +  + D   S    P P RRS+R+R PST     +Y++LTD GE +S++EA++   K+
Sbjct: 741  HDEPAQEDPQSSSLPAPEP-RRSSRERRPSTWYNTEEYVMLTDEGEPQSYKEAIKDIHKE 799

Query: 2456 CLMDVMKEEIKSLHDNHTFDLVKLPKGKKALRNRWVYKQKQDENAKKPRYKARLVVKGCN 2277
                 M+EE++SLH+NHT++LV+LPKG++AL+N+WVY+ K ++N  KPRYKARLVVKG  
Sbjct: 800  EWRKAMQEEMQSLHENHTYELVELPKGRRALKNKWVYRIKTEDNNTKPRYKARLVVKGFG 859

Query: 2276 QKEGIDFEEIFSPVVKMSSIRVILGLASNLDLEIEQLDVKTVFLHGDLEEDIYMEQPEDF 2097
            Q++GIDFEEIFSPVVKMSSIRVILG+A+  DLEIEQLDVKT FLHGDLEE+IYMEQPE F
Sbjct: 860  QEKGIDFEEIFSPVVKMSSIRVILGIAATQDLEIEQLDVKTAFLHGDLEEEIYMEQPEGF 919

Query: 2096 KVSGKEDYVCKLKKSLYGLKQTPRQWYRKFDSFMGEQGYKKTSCDHCVFLKRFDDNDFII 1917
            KV GKE+ VC+L KSLYGLKQ PRQWY+KF+SFM E  +KKT  DHCVF+KR+   DF+I
Sbjct: 920  KVPGKENLVCRLTKSLYGLKQAPRQWYKKFESFMAEHEFKKTESDHCVFIKRYASGDFLI 979

Query: 1916 LLLYVDDMLIVGQNTNRIVNLKEQLNKTFSMKELGPANQILGIRIIRDRKARRLWLSQEA 1737
            LLLYVDDMLI GQ+  +I  LK+ L+K+F+MK+LGPA QILG+RI RDR  R LWLSQE 
Sbjct: 980  LLLYVDDMLIFGQDRIKIAALKKDLSKSFAMKDLGPAKQILGMRITRDRSKRLLWLSQER 1039

Query: 1736 YVNKVLQRFNMEKEKPVSTPLALHFKLSTEQCPSTAEEIKSMQNIPYASAVGSLMYAMVC 1557
            Y+ KVL++FNM+K KPV+TPLA HF+LS++Q P++  E++ M+ IPY+S VGSLMYAM+C
Sbjct: 1040 YIEKVLEQFNMDKCKPVNTPLAGHFRLSSKQSPTSEREMEEMKKIPYSSVVGSLMYAMIC 1099

Query: 1556 MRPDIAHAVGLVSRFLSNPGKVHWSAVKWIMRYLRATADMKLCFGSDKATLVGYSDSDMA 1377
             RPDIA+AVG+VSRFL++PG  HW AVKWI+RYLR T+   LCFG  K  L GY+D+D+A
Sbjct: 1100 TRPDIAYAVGVVSRFLADPGNEHWLAVKWILRYLRGTSKRCLCFGKGKPVLQGYTDADLA 1159

Query: 1376 GDIDSRKFTSVLYDYFCRGSCVLAIKITK 1290
            GDIDSRK TS     F  G+     K+ K
Sbjct: 1160 GDIDSRKSTSGYLTTFAGGAVSWQSKLQK 1188



 Score =  186 bits (472), Expect = 3e-44
 Identities = 87/130 (66%), Positives = 105/130 (80%)
 Frame = -1

Query: 1342 YMITFAGGAVSWQSRLQKCVALSTTESEFIAATEASKELLWMKRFVRQLGFTQKRYVLYC 1163
            Y+ TFAGGAVSWQS+LQKCVALSTTE+E+IAATEA KE+LWMK  + +LG  Q+RYV+ C
Sbjct: 1171 YLTTFAGGAVSWQSKLQKCVALSTTEAEYIAATEACKEMLWMKNMLLELGVEQERYVVKC 1230

Query: 1162 DNQSAVHLAKNFTFHAKFKHIDVRYHWIRDVLEAKFLEFHKIHTDDNGSDMMTKALPRGK 983
            DNQSA++LAKN  FH++ KHID RYHWIR+VLE K L   K+HTD+N SDMMTK +P  K
Sbjct: 1231 DNQSAIYLAKNSKFHSRTKHIDTRYHWIREVLEEKKLHLDKVHTDENWSDMMTKVIPTKK 1290

Query: 982  FEICRSLAGM 953
            FE C   AG+
Sbjct: 1291 FEDCCQGAGL 1300



 Score = 71.6 bits (174), Expect = 8e-09
 Identities = 31/88 (35%), Positives = 48/88 (54%)
 Frame = -2

Query: 264 MDSSNINTSRMISLNGNNYHLWKRKMKDLLYVKSWHLPVFSTDKPEGKTDEQWEFEHEQV 85
           M+ +  +   M  L  NNY  WK  M+D LY K  H P+   +K EGK+D QWE  + + 
Sbjct: 1   MEDNVAHDGDMFKLTANNYSYWKPMMEDHLYCKDLHEPIIYKEKVEGKSDAQWELLNRKA 60

Query: 84  CGFIRQWVDDNILNHINDEVHAKTLWQK 1
              IR+++D ++  H++   +A  LW K
Sbjct: 61  VAMIRKYIDKSLFEHVSTYTNAYELWAK 88


>AER13172.1 putative gag/pol polyprotein [Phaseolus vulgaris]
          Length = 1556

 Score =  791 bits (2042), Expect = 0.0
 Identities = 400/683 (58%), Positives = 492/683 (72%), Gaps = 1/683 (0%)
 Frame = -3

Query: 3335 VLDVFKQFQALAERQTGEKLKCLRSDNGGEYIGPMDDYCK*LGIRHQRTQKKTPQLNGVA 3156
            VL  FK+F  L ERQ+G+KLKC+R+DNGGEY GP D YCK  GIRH++T  KTPQLNG+A
Sbjct: 518  VLAKFKEFHVLVERQSGKKLKCIRTDNGGEYCGPFDAYCKQHGIRHEKTPPKTPQLNGLA 577

Query: 3155 ERMNRTLLERIRCMLSEAKLPRQFWGEALFTAAHVINMSPCASLDGDVPDKIWFDKEVFY 2976
            ERMNRTL+ER+RCMLS+AKLP+ FWGEAL+TA HVIN+SP  +L+ +VPDK+WF K V Y
Sbjct: 578  ERMNRTLIERVRCMLSKAKLPKHFWGEALYTAVHVINLSPAIALNAEVPDKVWFGKNVKY 637

Query: 2975 SHLRVFGCKAYVHVPNDERSKLDSKTRQCIFVGYGEDQFGYRFYDPVDKKLIRSRDVVFV 2796
             HLRVFGCKAYVH                                   KK +RSRDV F+
Sbjct: 638  DHLRVFGCKAYVH-----------------------------------KKAVRSRDVKFM 662

Query: 2795 EDQTIEDIQKAQETTSHQGYXXXXXXXXXXXXXXXPANEVQ-GNNFEGNPXXXXXXXXXX 2619
            EDQTIEDI K ++ TS                     ++ Q G+ F+             
Sbjct: 663  EDQTIEDIDKTEKITSETDNRLSNVDPVLSDEQHDDVDDQQLGDAFD---VPIDDSEEEH 719

Query: 2618 XDTIETDHHGSPEVQPAPVRRSTRDRNPSTDYILLTDGGESESFREAVESDDKQCLMDVM 2439
              + + D   +PE     +RR      PS DY+ LTD GE E + EA+ES++K+  +D M
Sbjct: 720  GMSQDEDLGDAPEPPQVQIRRY-----PSDDYVTLTDEGEPECYLEAMESEEKKKWLDAM 774

Query: 2438 KEEIKSLHDNHTFDLVKLPKGKKALRNRWVYKQKQDENAKKPRYKARLVVKGCNQKEGID 2259
            ++E+KSLHDNHTFDLVKLPK KKAL NRW+Y+ KQ+ N+  PRYKARLVVKG  Q++GID
Sbjct: 775  QDEMKSLHDNHTFDLVKLPKDKKALENRWIYRVKQESNSTSPRYKARLVVKGFRQRKGID 834

Query: 2258 FEEIFSPVVKMSSIRVILGLASNLDLEIEQLDVKTVFLHGDLEEDIYMEQPEDFKVSGKE 2079
            F EIFSPVVKMSSIR++L LA+ LDLE+EQ+DVKT FLHGDLEE+IYM+QP+ F V GKE
Sbjct: 835  FNEIFSPVVKMSSIRIVLSLAATLDLEVEQMDVKTAFLHGDLEEEIYMKQPDGFLVEGKE 894

Query: 2078 DYVCKLKKSLYGLKQTPRQWYRKFDSFMGEQGYKKTSCDHCVFLKRFDDNDFIILLLYVD 1899
            D+VC+L+KSLYGLKQ PRQWY+KF+S M EQGYKKT+ DHCVF+K+F ++DFIILLLYVD
Sbjct: 895  DHVCRLRKSLYGLKQAPRQWYKKFESVMCEQGYKKTTSDHCVFVKKFANDDFIILLLYVD 954

Query: 1898 DMLIVGQNTNRIVNLKEQLNKTFSMKELGPANQILGIRIIRDRKARRLWLSQEAYVNKVL 1719
            D+LIVG++ + I  LK+QL+++F+MK++G A QILGIRI+RDR+ ++LWLSQE YV +VL
Sbjct: 955  DILIVGKDISMINRLKKQLSESFAMKDMGAAKQILGIRIMRDRQEKKLWLSQENYVKRVL 1014

Query: 1718 QRFNMEKEKPVSTPLALHFKLSTEQCPSTAEEIKSMQNIPYASAVGSLMYAMVCMRPDIA 1539
            QRF ME  K VSTPLA HFKLST+Q PS   E   MQ IPYASAVGSLMYAMVC RPDIA
Sbjct: 1015 QRFQMENAKVVSTPLATHFKLSTKQSPSYEYEKSDMQRIPYASAVGSLMYAMVCTRPDIA 1074

Query: 1538 HAVGLVSRFLSNPGKVHWSAVKWIMRYLRATADMKLCFGSDKATLVGYSDSDMAGDIDSR 1359
            H VG VSRF+SNPG+ HW+AVKWI+RYLR T  ++LCFG DK TLVGY+DSDM GDIDSR
Sbjct: 1075 HVVGTVSRFMSNPGREHWNAVKWILRYLRGTTCLRLCFGGDKPTLVGYTDSDMGGDIDSR 1134

Query: 1358 KFTSVLYDYFCRGSCVLAIKITK 1290
            + TS     F  G+     ++ K
Sbjct: 1135 RSTSGYVIKFAGGAVAWQSRLQK 1157



 Score =  194 bits (492), Expect = 2e-46
 Identities = 88/129 (68%), Positives = 109/129 (84%)
 Frame = -1

Query: 1342 YMITFAGGAVSWQSRLQKCVALSTTESEFIAATEASKELLWMKRFVRQLGFTQKRYVLYC 1163
            Y+I FAGGAV+WQSRLQKCVALSTTE+EFIA TEA KELLW+K+ +++L F Q +Y+L+C
Sbjct: 1140 YVIKFAGGAVAWQSRLQKCVALSTTEAEFIAITEACKELLWVKKLLQELSFVQDKYLLFC 1199

Query: 1162 DNQSAVHLAKNFTFHAKFKHIDVRYHWIRDVLEAKFLEFHKIHTDDNGSDMMTKALPRGK 983
            D+QSA++L KN TFH++ KHIDVRYHWIRD LEA+ LE  K+HTDDN +DMMTK+LPR K
Sbjct: 1200 DSQSAIYLGKNSTFHSRSKHIDVRYHWIRDALEARLLELAKVHTDDNCADMMTKSLPRSK 1259

Query: 982  FEICRSLAG 956
             E C  +AG
Sbjct: 1260 SETCCKIAG 1268



 Score = 62.8 bits (151), Expect = 4e-06
 Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
 Frame = -2

Query: 285 LISVDSSMDSSNINTSRMISLNGN-NYHLWKRKMKDLLYVKSWHLPVFSTDKPEGKTDEQ 109
           ++S  S +     N S    + G   Y     KMKDLL+VK  HLPVF+T+KP+ KTDE+
Sbjct: 78  ILSAGSYLVVLQFNRSDCSKITGKVTYRPRTGKMKDLLFVKKLHLPVFATEKPKDKTDEE 137

Query: 108 WEFEHEQ 88
           W+FEH+Q
Sbjct: 138 WKFEHQQ 144


>GAU39612.1 hypothetical protein TSUD_276520 [Trifolium subterraneum]
          Length = 1403

 Score =  771 bits (1990), Expect = 0.0
 Identities = 392/709 (55%), Positives = 492/709 (69%), Gaps = 16/709 (2%)
 Frame = -3

Query: 3293 QTGEKLKCLRSDNGGEYIGPMDDYCK*LGIRHQRTQKKTPQLNGVAERMNRTLLERIRCM 3114
            ++G+ LKC+RSDNGGEY GP D YCK  GI H++T  KTPQLNG+AERMNRTL+ER+RCM
Sbjct: 312  KSGKNLKCVRSDNGGEYCGPFDVYCKQQGIAHEKTPPKTPQLNGLAERMNRTLVERVRCM 371

Query: 3113 LSEAKLPRQFWGEALFTAAHVINMSPCASLDGDVPDKIWFDKEVFYSHLRVFGCKAYVHV 2934
            LSEAKLP+ +W EAL+TA HVIN++P   L+ +VPDKIW                     
Sbjct: 372  LSEAKLPQHYWDEALYTAVHVINLTPTVVLNSEVPDKIWMK------------------- 412

Query: 2933 PNDERSKLDSKTRQCIFVGYGEDQFGYRFYDPVDKKLIRSRDVVFVEDQTIEDIQKAQET 2754
               + S + S+    IF+GYG+D+FGY+FYDP+ KKLIRSRDVVF++DQTIEDI K ++T
Sbjct: 413  ---DPSWMQSQNNLSIFIGYGKDEFGYKFYDPLWKKLIRSRDVVFMKDQTIEDIDKVEKT 469

Query: 2753 TSHQGYXXXXXXXXXXXXXXXPANEVQGNNFE----------GNPXXXXXXXXXXXDTIE 2604
            T  +                         N E          G             D   
Sbjct: 470  TCKKDVTLSNIDSVRLPVHNLDTIGGDVQNGEPHEYVDDQQIGEEVNIPANNDEENDMSH 529

Query: 2603 TDHHG-SPEVQPAPVRRSTRDRNPST-----DYILLTDGGESESFREAVESDDKQCLMDV 2442
             D+ G +PE     +RRS + R PST     +Y+ L D GE + F++ +ESD+ Q  MD 
Sbjct: 530  DDNLGEAPESSQVQLRRSNKQRQPSTRYNSDEYVTLNDEGEPKYFQDIMESDENQKWMDA 589

Query: 2441 MKEEIKSLHDNHTFDLVKLPKGKKALRNRWVYKQKQDENAKKPRYKARLVVKGCNQKEGI 2262
            M  E+KSLHDNHT+DLV+LPKG+KAL NRW+Y+ K + N+  PR KARLVVKG  Q++G+
Sbjct: 590  MNNEMKSLHDNHTYDLVELPKGEKALENRWIYRVKHESNSGSPRCKARLVVKGFRQRKGV 649

Query: 2261 DFEEIFSPVVKMSSIRVILGLASNLDLEIEQLDVKTVFLHGDLEEDIYMEQPEDFKVSGK 2082
            DF EIFSPVVKMSSIR +L LA+ LDLE+EQ+DVKT FLHGDLEE+IYM+QP+ F V GK
Sbjct: 650  DFNEIFSPVVKMSSIRTVLALAATLDLEVEQMDVKTTFLHGDLEEEIYMKQPDGFLVKGK 709

Query: 2081 EDYVCKLKKSLYGLKQTPRQWYRKFDSFMGEQGYKKTSCDHCVFLKRFDDNDFIILLLYV 1902
            EDYVC+L+KSLYGLKQ PRQWY+KF+S M EQGYKKT+ D CVF+++F ++DFII+LLYV
Sbjct: 710  EDYVCRLRKSLYGLKQAPRQWYKKFESVMSEQGYKKTTSDCCVFVRKFSNDDFIIILLYV 769

Query: 1901 DDMLIVGQNTNRIVNLKEQLNKTFSMKELGPANQILGIRIIRDRKARRLWLSQEAYVNKV 1722
            D MLIVG+N + I  L +QL ++ +MK+LG A QILGIRI+RDRK ++LW+SQE Y+ +V
Sbjct: 770  DHMLIVGKNISNIDKLMKQLGESIAMKDLGAAKQILGIRIMRDRKEKKLWMSQEHYIKRV 829

Query: 1721 LQRFNMEKEKPVSTPLALHFKLSTEQCPSTAEEIKSMQNIPYASAVGSLMYAMVCMRPDI 1542
            LQRF ME  K VSTPL  HFKLS++Q PS+ +E   M+ +PY S VGSLMYA+VC R DI
Sbjct: 830  LQRFQMENSKAVSTPLDTHFKLSSQQSPSSEDETFDMKRVPYTSDVGSLMYAIVCTRSDI 889

Query: 1541 AHAVGLVSRFLSNPGKVHWSAVKWIMRYLRATADMKLCFGSDKATLVGYSDSDMAGDIDS 1362
            AH VG VSRFLSNPG+ HW AVKWI+RYLR T  M+LCFG DK TL GYSDSDMAGDIDS
Sbjct: 890  AHIVGTVSRFLSNPGREHWDAVKWILRYLRGTICMRLCFGEDKPTLEGYSDSDMAGDIDS 949

Query: 1361 RKFTSVLYDYFCRGSCVLAIKITKMCGSVHYRVRIYCCDRGK*GIALDE 1215
            RK TS     F  G+    ++I K+C  V+YR R+YC  R    +A+ E
Sbjct: 950  RKSTSGYMIKFAGGAVAWHVQIAKVCSIVYYRGRVYCHYRSMQRVAIVE 998


>KYP42630.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 701

 Score =  742 bits (1916), Expect = 0.0
 Identities = 368/618 (59%), Positives = 450/618 (72%), Gaps = 17/618 (2%)
 Frame = -3

Query: 3149 MNRTLLERIRCMLSEAKLPRQFWGEALFTAAHVINMSPCASLDGDVPDKIWFDKEVFYSH 2970
            MNRTLLER+RCMLS+AKLP+ FWGEAL+TA HVIN++P   LD +VPDKIWF K   Y +
Sbjct: 1    MNRTLLERVRCMLSDAKLPKHFWGEALYTAVHVINLTPIVILDSEVPDKIWFGKNASYDY 60

Query: 2969 LRVFGCKAYVHVPNDERSKLDSKTRQCIFVGYGEDQFGYRFYDPVDKKLIRSRDVVFVED 2790
            L VFGCKA+VHV  DERSKLD+KTRQCIF+GYG+D+FGYR YDPV+KKL+RS DV  +ED
Sbjct: 61   LHVFGCKAFVHVSKDERSKLDTKTRQCIFIGYGQDEFGYRLYDPVEKKLVRSHDVQLMED 120

Query: 2789 QTIEDIQKAQETTSHQ------GYXXXXXXXXXXXXXXXPANEVQGNNFEGNPXXXXXXX 2628
            QTIEDI K ++TT  +      G                  N+ Q  + +          
Sbjct: 121  QTIEDINKVEKTTPKKDNNLTDGNPMRLPIHNLDNVETDAPNDEQHGDVDDQQNGDVLEV 180

Query: 2627 XXXXDTIETDH------HGSPEVQPAPVRRSTR-----DRNPSTDYILLTDGGESESFRE 2481
                   E D         + E+   P RRS +      R  S +Y+ LTDGGE E F E
Sbjct: 181  PIDDTQEEHDMVHDDDLDNAHELPQVPPRRSNKLRQFSSRYSSDEYVALTDGGEPECFEE 240

Query: 2480 AVESDDKQCLMDVMKEEIKSLHDNHTFDLVKLPKGKKALRNRWVYKQKQDENAKKPRYKA 2301
            A+ES+ KQ  +D M++E+KSLHDNHT+DLVKLPKGK+AL NRW+++ KQ+ N+  PRYKA
Sbjct: 241  ALESEKKQRWLDAMQDEMKSLHDNHTYDLVKLPKGKRALENRWIFRVKQESNSTSPRYKA 300

Query: 2300 RLVVKGCNQKEGIDFEEIFSPVVKMSSIRVILGLASNLDLEIEQLDVKTVFLHGDLEEDI 2121
            RLVVKG  Q+  +DF EIFSPVVKMSSIR +L L + LDLE+EQ+DVKT FLHG+LEE+I
Sbjct: 301  RLVVKGFRQRNDVDFNEIFSPVVKMSSIRTVLSLVATLDLEVEQMDVKTAFLHGNLEEEI 360

Query: 2120 YMEQPEDFKVSGKEDYVCKLKKSLYGLKQTPRQWYRKFDSFMGEQGYKKTSCDHCVFLKR 1941
            YM+QP+ F V GKED+VC+L+KSLYGLKQ PRQWY+KF+SFM EQGYKKT+ DHCVF+K+
Sbjct: 361  YMKQPDGFLVEGKEDHVCRLRKSLYGLKQAPRQWYKKFESFMCEQGYKKTTSDHCVFVKK 420

Query: 1940 FDDNDFIILLLYVDDMLIVGQNTNRIVNLKEQLNKTFSMKELGPANQILGIRIIRDRKAR 1761
            F D+DFIILLLYVDDMLIV ++ +RI  LK+QL + F+MK+LG A +ILGI I    K +
Sbjct: 421  FSDDDFIILLLYVDDMLIVEKDVSRIDRLKKQLGEAFAMKDLGAAKKILGISI----KEK 476

Query: 1760 RLWLSQEAYVNKVLQRFNMEKEKPVSTPLALHFKLSTEQCPSTAEEIKSMQNIPYASAVG 1581
            +LWLSQE Y+ KVLQRF ME  K V TPLA HFKLS +Q PS   E   M  +PY  AVG
Sbjct: 477  KLWLSQEHYIKKVLQRFQMENSKVVGTPLAAHFKLSVKQSPSNEAEKTYMSKVPYVYAVG 536

Query: 1580 SLMYAMVCMRPDIAHAVGLVSRFLSNPGKVHWSAVKWIMRYLRATADMKLCFGSDKATLV 1401
            SLMY MVC RPD+A+ VG VSRFLSNP + HW+AVKWI+RYL  T+ ++LCFG DK TLV
Sbjct: 537  SLMYPMVCTRPDVAYVVGTVSRFLSNPSREHWNAVKWILRYLHGTSGLRLCFGGDKPTLV 596

Query: 1400 GYSDSDMAGDIDSRKFTS 1347
            GYS+SDMAGD+DSRK TS
Sbjct: 597  GYSNSDMAGDVDSRKSTS 614



 Score =  129 bits (323), Expect = 7e-27
 Identities = 57/86 (66%), Positives = 72/86 (83%)
 Frame = -1

Query: 1342 YMITFAGGAVSWQSRLQKCVALSTTESEFIAATEASKELLWMKRFVRQLGFTQKRYVLYC 1163
            Y+I FAGG V+WQSRLQ+CV LSTTE+EFIA TEA KELLW+K+F+++L F Q +Y L+ 
Sbjct: 616  YLINFAGGVVAWQSRLQRCVTLSTTEAEFIAITEACKELLWLKKFLQELDFVQDKYPLFV 675

Query: 1162 DNQSAVHLAKNFTFHAKFKHIDVRYH 1085
            D+QS +HL KN TFH++ KHIDVRYH
Sbjct: 676  DSQSVIHLGKNPTFHSRSKHIDVRYH 701


>KYP66486.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1321

 Score =  758 bits (1956), Expect = 0.0
 Identities = 385/697 (55%), Positives = 494/697 (70%), Gaps = 15/697 (2%)
 Frame = -3

Query: 3335 VLDVFKQFQALAERQTGEKLKCLRSDNGGEYIGP-MDDYCK*LGIRHQRTQKKTPQLNGV 3159
            V   F+QF A+ ER+TG++LKC+R+DNGGEYI     DYC   GIRH++T   TPQ NG+
Sbjct: 518  VFQCFQQFHAMVERETGKQLKCIRTDNGGEYISKEFKDYCSKYGIRHEKTVPGTPQHNGI 577

Query: 3158 AERMNRTLLERIRCMLSEAKLPRQFWGEALFTAAHVINMSPCASLDGDVPDKIWFDKEVF 2979
            AERMNRT++E++RCML  AKLP+ FWGEA+ TA ++IN  P   L  D+P+++W  KEV 
Sbjct: 578  AERMNRTIVEKVRCMLRMAKLPKPFWGEAVQTAVYLINRLPSVPLGFDIPERVWAGKEVS 637

Query: 2978 YSHLRVFGCKAYVHVPNDERSKLDSKTRQCIFVGYGEDQFGYRFYDPVDKKLIRSRDVVF 2799
            YSHL+VFGCKA++HVP ++RSKLD K   C+FVGYG ++FGY+ +DP  K+++RSRDV+F
Sbjct: 638  YSHLKVFGCKAFMHVPKEQRSKLDDKAIPCVFVGYGNEEFGYKLWDPERKRIVRSRDVIF 697

Query: 2798 VEDQTIEDIQKAQETTSHQ-GYXXXXXXXXXXXXXXXPANEVQGNNFEGNPXXXXXXXXX 2622
             E +TIED++  +     + G                   E +    E  P         
Sbjct: 698  HEHETIEDLKGGEAAKPMEDGVNPTSHVPSECATDGRQTQEPEHETEE--PVFGDEESVD 755

Query: 2621 XXDTI---ETDHHGSP-----EVQPAPVRRSTRDRNPST-----DYILLTDGGESESFRE 2481
                +   E +  G P     +V+P  +RRSTR+R PST     +YIL+ D GE ESF+E
Sbjct: 756  EEVVVPDTEANEQGEPSYTSGQVEPQ-IRRSTRERQPSTKYPSSEYILIADEGEPESFQE 814

Query: 2480 AVESDDKQCLMDVMKEEIKSLHDNHTFDLVKLPKGKKALRNRWVYKQKQDENAKKPRYKA 2301
                 DK C +  M+EE+ SL  N+T++LV+LPKG++ L+N+WV+K K+D + K  R+KA
Sbjct: 815  VQSHKDKGCWVKAMQEEMDSLKRNNTYELVQLPKGRRVLKNKWVFKLKKDGD-KLVRHKA 873

Query: 2300 RLVVKGCNQKEGIDFEEIFSPVVKMSSIRVILGLASNLDLEIEQLDVKTVFLHGDLEEDI 2121
            RLVVKG +QK+GIDFEEIFSPVVKM SIRVILGL +++DLE+EQLDVKT FLHGDL+E+I
Sbjct: 874  RLVVKGFSQKQGIDFEEIFSPVVKMCSIRVILGLVASMDLELEQLDVKTAFLHGDLDEEI 933

Query: 2120 YMEQPEDFKVSGKEDYVCKLKKSLYGLKQTPRQWYRKFDSFMGEQGYKKTSCDHCVFLKR 1941
            YMEQPE F+V GKED VCKLKKSLYGLKQ PRQWY+KFDSF+  QG+K+T  D CV++ R
Sbjct: 934  YMEQPEGFEVKGKEDMVCKLKKSLYGLKQAPRQWYKKFDSFIKSQGFKRTDADPCVYINR 993

Query: 1940 FDDNDFIILLLYVDDMLIVGQNTNRIVNLKEQLNKTFSMKELGPANQILGIRIIRDRKAR 1761
            + +  F+ILLLYVDDMLIVGQ+   I NLK +L+K F MK++G A  ILG+ IIRDRKA 
Sbjct: 994  YPNGKFLILLLYVDDMLIVGQDVQMIKNLKVELSKAFDMKDMGAAKHILGMDIIRDRKAG 1053

Query: 1760 RLWLSQEAYVNKVLQRFNMEKEKPVSTPLALHFKLSTEQCPSTAEEIKSMQNIPYASAVG 1581
            +LWLSQE Y+ +VL+RFNM+  KPV TPL  HFKLS + CP+  E+   M  IPY+SAVG
Sbjct: 1054 KLWLSQERYIERVLERFNMKNAKPVITPLVGHFKLSKKSCPTIREK---MSTIPYSSAVG 1110

Query: 1580 SLMYAMVCMRPDIAHAVGLVSRFLSNPGKVHWSAVKWIMRYLRATADMKLCFGSDKATLV 1401
            SLMYAMVC RPDIAHAVG+VSR+LSNPGK HW AVKWI+RYLR T+ + L FG  K  L 
Sbjct: 1111 SLMYAMVCTRPDIAHAVGVVSRYLSNPGKTHWEAVKWILRYLRGTSKLCLRFGGAKPILE 1170

Query: 1400 GYSDSDMAGDIDSRKFTSVLYDYFCRGSCVLAIKITK 1290
            GY+D+DMAGD+D RK TS     F  G+     K+ K
Sbjct: 1171 GYTDADMAGDLDDRKSTSGYIFTFSGGAISWQSKLQK 1207



 Score =  172 bits (436), Expect = 7e-40
 Identities = 74/130 (56%), Positives = 103/130 (79%)
 Frame = -1

Query: 1342 YMITFAGGAVSWQSRLQKCVALSTTESEFIAATEASKELLWMKRFVRQLGFTQKRYVLYC 1163
            Y+ TF+GGA+SWQS+LQKC++LSTTE+E++AATEA KE+LWMK+F+++LG  Q+ Y++YC
Sbjct: 1190 YIFTFSGGAISWQSKLQKCISLSTTEAEYVAATEAGKEMLWMKKFLQELGLKQEEYIVYC 1249

Query: 1162 DNQSAVHLAKNFTFHAKFKHIDVRYHWIRDVLEAKFLEFHKIHTDDNGSDMMTKALPRGK 983
            D+QSA+ L+KN  +H++ KHIDVRYHWIR  +E +  +  KIHTD N +DM+TK + R K
Sbjct: 1250 DSQSALDLSKNTMYHSRTKHIDVRYHWIRLAIEKQLFQLKKIHTDRNAADMLTKNVTREK 1309

Query: 982  FEICRSLAGM 953
               C  L GM
Sbjct: 1310 LRQCIELVGM 1319


>P10978.1 RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
            1-94; Includes: RecName: Full=Protease; Includes:
            RecName: Full=Reverse transcriptase; Includes: RecName:
            Full=Endonuclease CAA32025.1 unnamed protein product
            [Nicotiana tabacum]
          Length = 1328

 Score =  752 bits (1942), Expect = 0.0
 Identities = 384/690 (55%), Positives = 486/690 (70%), Gaps = 8/690 (1%)
 Frame = -3

Query: 3335 VLDVFKQFQALAERQTGEKLKCLRSDNGGEYIG-PMDDYCK*LGIRHQRTQKKTPQLNGV 3159
            V  VF++F AL ER+TG KLK LRSDNGGEY     ++YC   GIRH++T   TPQ NGV
Sbjct: 525  VFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGV 584

Query: 3158 AERMNRTLLERIRCMLSEAKLPRQFWGEALFTAAHVINMSPCASLDGDVPDKIWFDKEVF 2979
            AERMNRT++E++R ML  AKLP+ FWGEA+ TA ++IN SP   L  ++P+++W +KEV 
Sbjct: 585  AERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVS 644

Query: 2978 YSHLRVFGCKAYVHVPNDERSKLDSKTRQCIFVGYGEDQFGYRFYDPVDKKLIRSRDVVF 2799
            YSHL+VFGC+A+ HVP ++R+KLD K+  CIF+GYG+++FGYR +DPV KK+IRSRDVVF
Sbjct: 645  YSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVF 704

Query: 2798 VEDQ--TIEDIQKAQETTSHQGYXXXXXXXXXXXXXXXPANEVQGNNFEGNPXXXXXXXX 2625
             E +  T  D+ +  +      +                 +EV     E           
Sbjct: 705  RESEVRTAADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQG-EQPGEVIEQGEQ 763

Query: 2624 XXXDTIETDHHGSPEVQPAPVRRSTRDR-----NPSTDYILLTDGGESESFREAVESDDK 2460
                  E +H    E Q  P+RRS R R      PST+Y+L++D  E ES +E +   +K
Sbjct: 764  LDEGVEEVEHPTQGEEQHQPLRRSERPRVESRRYPSTEYVLISDDREPESLKEVLSHPEK 823

Query: 2459 QCLMDVMKEEIKSLHDNHTFDLVKLPKGKKALRNRWVYKQKQDENAKKPRYKARLVVKGC 2280
              LM  M+EE++SL  N T+ LV+LPKGK+ L+ +WV+K K+D + K  RYKARLVVKG 
Sbjct: 824  NQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGF 883

Query: 2279 NQKEGIDFEEIFSPVVKMSSIRVILGLASNLDLEIEQLDVKTVFLHGDLEEDIYMEQPED 2100
             QK+GIDF+EIFSPVVKM+SIR IL LA++LDLE+EQLDVKT FLHGDLEE+IYMEQPE 
Sbjct: 884  EQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEG 943

Query: 2099 FKVSGKEDYVCKLKKSLYGLKQTPRQWYRKFDSFMGEQGYKKTSCDHCVFLKRFDDNDFI 1920
            F+V+GK+  VCKL KSLYGLKQ PRQWY KFDSFM  Q Y KT  D CV+ KRF +N+FI
Sbjct: 944  FEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFI 1003

Query: 1919 ILLLYVDDMLIVGQNTNRIVNLKEQLNKTFSMKELGPANQILGIRIIRDRKARRLWLSQE 1740
            ILLLYVDDMLIVG++   I  LK  L+K+F MK+LGPA QILG++I+R+R +R+LWLSQE
Sbjct: 1004 ILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQE 1063

Query: 1739 AYVNKVLQRFNMEKEKPVSTPLALHFKLSTEQCPSTAEEIKSMQNIPYASAVGSLMYAMV 1560
             Y+ +VL+RFNM+  KPVSTPLA H KLS + CP+T EE  +M  +PY+SAVGSLMYAMV
Sbjct: 1064 KYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMV 1123

Query: 1559 CMRPDIAHAVGLVSRFLSNPGKVHWSAVKWIMRYLRATADMKLCFGSDKATLVGYSDSDM 1380
            C RPDIAHAVG+VSRFL NPGK HW AVKWI+RYLR T    LCFG     L GY+D+DM
Sbjct: 1124 CTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGYTDADM 1183

Query: 1379 AGDIDSRKFTSVLYDYFCRGSCVLAIKITK 1290
            AGDID+RK ++     F  G+     K+ K
Sbjct: 1184 AGDIDNRKSSTGYLFTFSGGAISWQSKLQK 1213



 Score =  186 bits (471), Expect = 5e-44
 Identities = 80/133 (60%), Positives = 112/133 (84%)
 Frame = -1

Query: 1342 YMITFAGGAVSWQSRLQKCVALSTTESEFIAATEASKELLWMKRFVRQLGFTQKRYVLYC 1163
            Y+ TF+GGA+SWQS+LQKCVALSTTE+E+IAATE  KE++W+KRF+++LG  QK YV+YC
Sbjct: 1196 YLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVVYC 1255

Query: 1162 DNQSAVHLAKNFTFHAKFKHIDVRYHWIRDVLEAKFLEFHKIHTDDNGSDMMTKALPRGK 983
            D+QSA+ L+KN  +HA+ KHIDVRYHWIR++++ + L+  KI T++N +DM+TK +PR K
Sbjct: 1256 DSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNK 1315

Query: 982  FEICRSLAGMAAN 944
            FE+C+ L GM +N
Sbjct: 1316 FELCKELVGMHSN 1328


>KYP40337.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1269

 Score =  680 bits (1754), Expect(2) = 0.0
 Identities = 354/667 (53%), Positives = 459/667 (68%), Gaps = 4/667 (0%)
 Frame = -3

Query: 3335 VLDVFKQFQALAERQTGEKLKCLRSDNGGEYIGP-MDDYCK*LGIRHQRTQKKTPQLNGV 3159
            V + FK ++A+ E +TG K+K LR+DNGGEY       +C   GIR +RT   TPQ NGV
Sbjct: 492  VFEAFKMWKAMVENETGLKIKKLRTDNGGEYEDTRFKRFCYEHGIRMERTVPGTPQQNGV 551

Query: 3158 AERMNRTLLERIRCMLSEAKLPRQFWGEALFTAAHVINMSPCASLDGDVPDKIWFDKEVF 2979
            AERMNRTL ER R M  ++ LP+QFW EA+ TAA++IN  P   L+  +P+++W  KEV 
Sbjct: 552  AERMNRTLTERARSMRMQSGLPKQFWAEAVNTAAYLINRGPSVPLEHKIPEEVWSGKEVK 611

Query: 2978 YSHLRVFGCKAYVHVPNDERSKLDSKTRQCIFVGYGEDQFGYRFYDPVDKKLIRSRDVVF 2799
             SHLRVFGC AYVH+ +  R+KLD K+++C F+GYGED+FGYR +D  +KK+IRSRDV+F
Sbjct: 612  LSHLRVFGCVAYVHISDQGRNKLDPKSKKCTFIGYGEDEFGYRLWDDENKKMIRSRDVIF 671

Query: 2798 VEDQTIEDIQKAQETTSHQGYXXXXXXXXXXXXXXXPANEVQGNNFEGNPXXXXXXXXXX 2619
             E    +D Q    + S                       V+ ++   +P          
Sbjct: 672  NEGVMYKDKQNTSASNSKP----------------IEPTYVEVDDALESPPVESSQSVE- 714

Query: 2618 XDTIETDHHGSPEVQPAPVRRSTRDRNPST---DYILLTDGGESESFREAVESDDKQCLM 2448
              +IE D  G   V    +RRS+R   P+    +Y+LLTDGGE E + EA ++ D     
Sbjct: 715  --SIEPDR-GQQCVPEPELRRSSRVPVPNRRYMNYMLLTDGGEPEDYSEACQTRDASKWE 771

Query: 2447 DVMKEEIKSLHDNHTFDLVKLPKGKKALRNRWVYKQKQDENAKKPRYKARLVVKGCNQKE 2268
              MKEE+KSL  N T++L KLP GKKAL N+WVY+ K++ +  K RYKARLVVKG  QKE
Sbjct: 772  LAMKEEMKSLISNQTWELAKLPMGKKALHNKWVYRVKEEHDGSK-RYKARLVVKGFQQKE 830

Query: 2267 GIDFEEIFSPVVKMSSIRVILGLASNLDLEIEQLDVKTVFLHGDLEEDIYMEQPEDFKVS 2088
            G+D+ EIFSPVVK+++IR +L + ++ +L +EQLDVKT FLHGDL+E+IYM QPE F   
Sbjct: 831  GVDYTEIFSPVVKLNTIRTVLSIVASEELYLEQLDVKTAFLHGDLDEEIYMHQPEGFSEK 890

Query: 2087 GKEDYVCKLKKSLYGLKQTPRQWYRKFDSFMGEQGYKKTSCDHCVFLKRFDDNDFIILLL 1908
            GKE+ VC+LKKSLYGLKQ PRQWYRKF+SFM ++G+KK + DHC F KR++ + +IILLL
Sbjct: 891  GKENMVCRLKKSLYGLKQAPRQWYRKFESFMHKEGFKKCNADHCCFFKRYNSS-YIILLL 949

Query: 1907 YVDDMLIVGQNTNRIVNLKEQLNKTFSMKELGPANQILGIRIIRDRKARRLWLSQEAYVN 1728
            YVDDML+ G N   I NLK+QL+K F MK+LGPA +ILG++I RD++   L LSQ  Y+N
Sbjct: 950  YVDDMLVAGSNMIEIRNLKKQLSKEFDMKDLGPAKKILGMQITRDKQKGTLQLSQAEYIN 1009

Query: 1727 KVLQRFNMEKEKPVSTPLALHFKLSTEQCPSTAEEIKSMQNIPYASAVGSLMYAMVCMRP 1548
            +VLQRFNM   KPVSTPLA HF+LST+Q P T EE + M   PYASA+GSLMYAMVC RP
Sbjct: 1010 RVLQRFNMSNAKPVSTPLASHFRLSTDQSPKTEEEKELMAKTPYASAIGSLMYAMVCTRP 1069

Query: 1547 DIAHAVGLVSRFLSNPGKVHWSAVKWIMRYLRATADMKLCFGSDKATLVGYSDSDMAGDI 1368
            DI +AVG+VSRF+SNPGK HW AVKWI+RYLRAT +  LCF   +  + GY D+D AG+I
Sbjct: 1070 DIGYAVGVVSRFMSNPGKAHWEAVKWILRYLRATKEKCLCFSKGELKVQGYVDADFAGEI 1129

Query: 1367 DSRKFTS 1347
            D R+ T+
Sbjct: 1130 DHRRSTT 1136



 Score =  142 bits (357), Expect(2) = 0.0
 Identities = 67/130 (51%), Positives = 94/130 (72%)
 Frame = -1

Query: 1342 YMITFAGGAVSWQSRLQKCVALSTTESEFIAATEASKELLWMKRFVRQLGFTQKRYVLYC 1163
            Y+ T    AVSW S++QK VALSTTE+E++A TEASKEL+W++  + +LGF Q+R VL+ 
Sbjct: 1138 YIFTVGTTAVSWMSQIQKIVALSTTEAEYVAVTEASKELIWLQGLLTELGFIQERSVLHS 1197

Query: 1162 DNQSAVHLAKNFTFHAKFKHIDVRYHWIRDVLEAKFLEFHKIHTDDNGSDMMTKALPRGK 983
            D+QSA+HLAKN TFH++ KHID+RYH+IR +LE + L   KI    N +DM+TK +   K
Sbjct: 1198 DSQSAIHLAKNSTFHSRTKHIDLRYHFIRSLLEDEVLTLRKILGSKNPADMLTKVVTTEK 1257

Query: 982  FEICRSLAGM 953
              +C +  G+
Sbjct: 1258 LRLCSTSIGL 1267


>ACL97384.1 Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  662 bits (1709), Expect(2) = 0.0
 Identities = 349/675 (51%), Positives = 453/675 (67%), Gaps = 12/675 (1%)
 Frame = -3

Query: 3335 VLDVFKQFQALAERQTGEKLKCLRSDNGGEYI-GPMDDYCK*LGIRHQRTQKKTPQLNGV 3159
            V  VFK F+A  E +TG+K+KCLR+DNGGEY+ G    +CK  GI  Q T   TPQ NGV
Sbjct: 525  VFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGV 584

Query: 3158 AERMNRTLLERIRCMLSEAKLPRQFWGEALFTAAHVINMSPCASLDGDVPDKIWFDKEVF 2979
            AERMNRTLLER R ML  A + + FW EA+ TA +VIN SP  ++D   P ++W  K V 
Sbjct: 585  AERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPVD 644

Query: 2978 YSHLRVFGCKAYVHVPNDERSKLDSKTRQCIFVGYGEDQFGYRFYDPVDKKLIRSRDVVF 2799
            YS L VFGC  YV   + ER+KLD K+R+CIF+GY ++  GYR +DP  +K++ SRDVVF
Sbjct: 645  YSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVF 704

Query: 2798 VEDQTIEDIQKAQETTSHQGYXXXXXXXXXXXXXXXPANEVQGNNFEGNPXXXXXXXXXX 2619
             E++ ++  QK   T+                         + ++ E  P          
Sbjct: 705  AENE-LQSKQKNDSTSKETAIVQMEE------------KSKESDSSEAEP---------- 741

Query: 2618 XDTIETDHHGSPEVQPAPVRRSTRD-RNPS--TDYI--------LLTDGGESESFREAVE 2472
                       P+     VRRSTR  + PS  +DY+        L+T+ GE  +F EA+ 
Sbjct: 742  -----VHEEQEPDDVNNGVRRSTRQTQKPSWQSDYVMTSHDAYCLITEEGEPSTFHEALN 796

Query: 2471 SDDKQCLMDVMKEEIKSLHDNHTFDLVKLPKGKKALRNRWVYKQKQDENAKKPRYKARLV 2292
              D    M  M EE+++LH N T++LV+LPKG+KA+ N+WVYK K+D N +  RY+ARLV
Sbjct: 797  GSDASQWMTAMHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIKRDGNDQVERYRARLV 856

Query: 2291 VKGCNQKEGIDFEEIFSPVVKMSSIRVILGLASNLDLEIEQLDVKTVFLHGDLEEDIYME 2112
            VKG  QKEGIDF EIFSPVV++++IRV+L + + LDL +EQLDVKT FLHG+LEE+IYM 
Sbjct: 857  VKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYML 916

Query: 2111 QPEDFKVSGKEDYVCKLKKSLYGLKQTPRQWYRKFDSFMGEQGYKKTSCDHCVFLKRFDD 1932
            QPE FK  GKE+ VC+L KSLYGLKQ PR WY++FDSF+    Y + S DHC + KRFD 
Sbjct: 917  QPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYSRLSSDHCTYYKRFDG 976

Query: 1931 NDFIILLLYVDDMLIVGQNTNRIVNLKEQLNKTFSMKELGPANQILGIRIIRDRKARRLW 1752
            NDFIILLLYVDDML+VG N +R+  LK QL + F MK+LGPAN+ILG++I RDRK R++W
Sbjct: 977  NDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIW 1036

Query: 1751 LSQEAYVNKVLQRFNMEKEKPVSTPLALHFKLSTEQCPSTAEEIKSMQNIPYASAVGSLM 1572
            LSQ+ Y+ KVL+RFNM+  KP+STPL ++FKLS+   PS   E   M  +PYASAVGSLM
Sbjct: 1037 LSQKNYLRKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLM 1096

Query: 1571 YAMVCMRPDIAHAVGLVSRFLSNPGKVHWSAVKWIMRYLRATADMKLCFGSDKATLVGYS 1392
            YAM+C RPDIA AVG+VSRF+++PGK HW+AVK IMRY++ T+ + +CFG  + T+ GY 
Sbjct: 1097 YAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSELTVRGYV 1156

Query: 1391 DSDMAGDIDSRKFTS 1347
            DSD AGD D RK T+
Sbjct: 1157 DSDFAGDHDKRKSTT 1171



 Score =  151 bits (382), Expect(2) = 0.0
 Identities = 69/130 (53%), Positives = 100/130 (76%)
 Frame = -1

Query: 1342 YMITFAGGAVSWQSRLQKCVALSTTESEFIAATEASKELLWMKRFVRQLGFTQKRYVLYC 1163
            Y+ T AGGAVSW S+LQ  VALSTTE+E++AAT+A KE +WM+R + +LG  Q++  +YC
Sbjct: 1173 YVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYC 1232

Query: 1162 DNQSAVHLAKNFTFHAKFKHIDVRYHWIRDVLEAKFLEFHKIHTDDNGSDMMTKALPRGK 983
            D+QSA+H+A+N  FH++ KHI V+YH++R+V+E   ++  KIHT+DN +D MTK++   K
Sbjct: 1233 DSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADAMTKSINTDK 1292

Query: 982  FEICRSLAGM 953
            F  CRSL G+
Sbjct: 1293 FIWCRSLYGL 1302


>ACL97386.1 Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  655 bits (1691), Expect(2) = 0.0
 Identities = 347/675 (51%), Positives = 451/675 (66%), Gaps = 12/675 (1%)
 Frame = -3

Query: 3335 VLDVFKQFQALAERQTGEKLKCLRSDNGGEYI-GPMDDYCK*LGIRHQRTQKKTPQLNGV 3159
            V  VFK F+A  E +T +K+KCLR+DNGGEY+ G    +CK  GI  Q T   TPQ NGV
Sbjct: 525  VFPVFKAFKAQIELETEKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGV 584

Query: 3158 AERMNRTLLERIRCMLSEAKLPRQFWGEALFTAAHVINMSPCASLDGDVPDKIWFDKEVF 2979
            AERMNRTLLER R ML  A + + FW EA  TA +VIN SP  ++D   P ++W  K V 
Sbjct: 585  AERMNRTLLERTRAMLKTAGMAKSFWAEAAKTACYVINRSPSTAIDLKTPMEMWKGKPVD 644

Query: 2978 YSHLRVFGCKAYVHVPNDERSKLDSKTRQCIFVGYGEDQFGYRFYDPVDKKLIRSRDVVF 2799
            YS L VFGC  YV   + E++KLD K+R+CIF+GY ++  GYR +DP  +K++ SRDVVF
Sbjct: 645  YSSLHVFGCPVYVMYNSQEKTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVF 704

Query: 2798 VEDQTIEDIQKAQETTSHQGYXXXXXXXXXXXXXXXPANEVQGNNFEGNPXXXXXXXXXX 2619
             E++ ++  QK   T+                     ++E +  + E  P          
Sbjct: 705  AENE-LQSEQKNDSTSKETAIVQMEEKSKESD-----SSEAESVHEEQEPDDVNDG---- 754

Query: 2618 XDTIETDHHGSPEVQPAPVRRSTRD-RNPS--TDYI--------LLTDGGESESFREAVE 2472
                              VRRSTR  + PS  +DY+        L+T+ GE  +F EA+ 
Sbjct: 755  ------------------VRRSTRQTQKPSWQSDYVMTSHDAYCLITEEGEPSTFHEALN 796

Query: 2471 SDDKQCLMDVMKEEIKSLHDNHTFDLVKLPKGKKALRNRWVYKQKQDENAKKPRYKARLV 2292
              D    M  M EE+++LH N T++LV+LPKG+KA+ N+WVYK K+D N +  RY+ARLV
Sbjct: 797  GSDASQWMTAMHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIKRDGNDQVERYRARLV 856

Query: 2291 VKGCNQKEGIDFEEIFSPVVKMSSIRVILGLASNLDLEIEQLDVKTVFLHGDLEEDIYME 2112
            VKG  QKEGIDF EIFSPVV++++IRV+L + + LDL +EQLDVKT FLHG+LEE+IYM 
Sbjct: 857  VKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYML 916

Query: 2111 QPEDFKVSGKEDYVCKLKKSLYGLKQTPRQWYRKFDSFMGEQGYKKTSCDHCVFLKRFDD 1932
            QPE FK  GKE+ VC+L KSLYGLKQ PR WY++FDSF+    Y + S DHC + KRFD 
Sbjct: 917  QPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYNRLSSDHCTYYKRFDG 976

Query: 1931 NDFIILLLYVDDMLIVGQNTNRIVNLKEQLNKTFSMKELGPANQILGIRIIRDRKARRLW 1752
            NDFIILLLYVDDML+VG N +R+  LK QL + F MK+LGPAN+ILG++I RDRK R++W
Sbjct: 977  NDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIW 1036

Query: 1751 LSQEAYVNKVLQRFNMEKEKPVSTPLALHFKLSTEQCPSTAEEIKSMQNIPYASAVGSLM 1572
            LSQ+ Y+ KVL+RFNM+  KP+STPL ++FKLS+   PS   E   M  +PYASAVGSLM
Sbjct: 1037 LSQKNYLRKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLM 1096

Query: 1571 YAMVCMRPDIAHAVGLVSRFLSNPGKVHWSAVKWIMRYLRATADMKLCFGSDKATLVGYS 1392
            YAM+C RPDIA AVG+VSRF+++PGK HW+AVK IMRY++ T+ + +CFG  + T+ GY 
Sbjct: 1097 YAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSELTVWGYV 1156

Query: 1391 DSDMAGDIDSRKFTS 1347
            DSD AGD D RK T+
Sbjct: 1157 DSDFAGDHDKRKSTT 1171



 Score =  149 bits (377), Expect(2) = 0.0
 Identities = 68/130 (52%), Positives = 99/130 (76%)
 Frame = -1

Query: 1342 YMITFAGGAVSWQSRLQKCVALSTTESEFIAATEASKELLWMKRFVRQLGFTQKRYVLYC 1163
            Y+ T AGGAVSW S+LQ  VALSTTE+E++AAT+A KE +WM+R + +LG  Q++  +YC
Sbjct: 1173 YVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYC 1232

Query: 1162 DNQSAVHLAKNFTFHAKFKHIDVRYHWIRDVLEAKFLEFHKIHTDDNGSDMMTKALPRGK 983
            D+QSA+H+A+N  FH++ KHI V+YH++R+V+E   ++  KIHT+DN +D+MTK +   K
Sbjct: 1233 DSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVMTKPINTDK 1292

Query: 982  FEICRSLAGM 953
            F  CRS  G+
Sbjct: 1293 FVWCRSSYGL 1302


>ACL97383.1 Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  655 bits (1691), Expect(2) = 0.0
 Identities = 348/675 (51%), Positives = 451/675 (66%), Gaps = 12/675 (1%)
 Frame = -3

Query: 3335 VLDVFKQFQALAERQTGEKLKCLRSDNGGEYI-GPMDDYCK*LGIRHQRTQKKTPQLNGV 3159
            V  VFK F+A  E +T +K+KCLR+DNGGEYI G    +CK  GI  Q T   TPQ NGV
Sbjct: 525  VFPVFKAFKAQIELETRKKIKCLRTDNGGEYIDGEFLAFCKQEGIVRQFTVAHTPQQNGV 584

Query: 3158 AERMNRTLLERIRCMLSEAKLPRQFWGEALFTAAHVINMSPCASLDGDVPDKIWFDKEVF 2979
            AERMNRTLLER R ML  A + + FW EA+ TA +VIN SP  ++D   P ++W  K V 
Sbjct: 585  AERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPVD 644

Query: 2978 YSHLRVFGCKAYVHVPNDERSKLDSKTRQCIFVGYGEDQFGYRFYDPVDKKLIRSRDVVF 2799
            YS L VFGC  YV   + ER+KLD K+R+CIF+GY ++  GYR +DP  +K++ SRDVVF
Sbjct: 645  YSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVF 704

Query: 2798 VEDQTIEDIQKAQETTSHQGYXXXXXXXXXXXXXXXPANEVQGNNFEGNPXXXXXXXXXX 2619
             E++ ++  QK   T+                     ++E +  + E  P          
Sbjct: 705  AENE-LQSEQKNDSTSKETAIVQMEEKSKESD-----SSEAESVHEEQEPDDVNDG---- 754

Query: 2618 XDTIETDHHGSPEVQPAPVRRSTRD-RNPS--TDYI--------LLTDGGESESFREAVE 2472
                              VRRSTR  + PS  +DY+        L+T+ GE  +F EA+ 
Sbjct: 755  ------------------VRRSTRQTQKPSWQSDYVMTSHDAYCLITEEGEPSTFHEALN 796

Query: 2471 SDDKQCLMDVMKEEIKSLHDNHTFDLVKLPKGKKALRNRWVYKQKQDENAKKPRYKARLV 2292
              D    M  M EE+++LH N T++LV+LPKG+KA+ N+WVYK K+D N +  RY+ARLV
Sbjct: 797  GSDASQWMTAMHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIKRDGNDQVERYRARLV 856

Query: 2291 VKGCNQKEGIDFEEIFSPVVKMSSIRVILGLASNLDLEIEQLDVKTVFLHGDLEEDIYME 2112
            VKG  QKEGIDF EIFSPVV++++IRV+L + + LDL +EQLDVKT FLHG+LEE+IYM 
Sbjct: 857  VKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYML 916

Query: 2111 QPEDFKVSGKEDYVCKLKKSLYGLKQTPRQWYRKFDSFMGEQGYKKTSCDHCVFLKRFDD 1932
            QPE FK  GKE+ VC+L KSLYGLKQ PR WY++FDSF+    Y + S DHC + KRFD 
Sbjct: 917  QPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYSRLSSDHCTYYKRFDG 976

Query: 1931 NDFIILLLYVDDMLIVGQNTNRIVNLKEQLNKTFSMKELGPANQILGIRIIRDRKARRLW 1752
            NDFIILLLYVDDML+VG N +R+  LK QL + F MK+LGPAN+ILG++I RDRK  ++W
Sbjct: 977  NDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDMKIW 1036

Query: 1751 LSQEAYVNKVLQRFNMEKEKPVSTPLALHFKLSTEQCPSTAEEIKSMQNIPYASAVGSLM 1572
            LSQ+ Y+ KVL+RFNM+  KP+STPL ++FKLS+   PS   E   M  +PYASAVGSLM
Sbjct: 1037 LSQKNYLRKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLM 1096

Query: 1571 YAMVCMRPDIAHAVGLVSRFLSNPGKVHWSAVKWIMRYLRATADMKLCFGSDKATLVGYS 1392
            YAM+C RPDIA AVG+VSRF+++PGK HW+AVK IMRY++ T+ + +CFG  + T+ GY 
Sbjct: 1097 YAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSELTVRGYV 1156

Query: 1391 DSDMAGDIDSRKFTS 1347
            DSD AGD D RK T+
Sbjct: 1157 DSDFAGDHDKRKSTT 1171



 Score =  149 bits (377), Expect(2) = 0.0
 Identities = 68/130 (52%), Positives = 99/130 (76%)
 Frame = -1

Query: 1342 YMITFAGGAVSWQSRLQKCVALSTTESEFIAATEASKELLWMKRFVRQLGFTQKRYVLYC 1163
            Y+ T AGGAVSW S+LQ  VALSTTE+E++AAT+A KE +WM+R + +LG  Q++  +YC
Sbjct: 1173 YVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYC 1232

Query: 1162 DNQSAVHLAKNFTFHAKFKHIDVRYHWIRDVLEAKFLEFHKIHTDDNGSDMMTKALPRGK 983
            D+QSA+H+A+N  FH++ KHI V+YH++R+V+E   ++  KIHT+DN +D+MTK +   K
Sbjct: 1233 DSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVMTKPINADK 1292

Query: 982  FEICRSLAGM 953
            F  CRS  G+
Sbjct: 1293 FVWCRSSYGL 1302


>KYP38095.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1256

 Score =  654 bits (1687), Expect(2) = 0.0
 Identities = 349/675 (51%), Positives = 451/675 (66%), Gaps = 12/675 (1%)
 Frame = -3

Query: 3335 VLDVFKQFQALAERQTGEKLKCLRSDNGGEYI-GPMDDYCK*LGIRHQRTQKKTPQLNGV 3159
            V  VFK+F+A  E  TG+++KCLR+DNGGEYI G    +CK  GI+ Q T   TPQ NGV
Sbjct: 475  VFPVFKEFKAQVELDTGKRIKCLRTDNGGEYIDGDFLAFCKQEGIKRQFTVAHTPQQNGV 534

Query: 3158 AERMNRTLLERIRCMLSEAKLPRQFWGEALFTAAHVINMSPCASLDGDVPDKIWFDKEVF 2979
            AERMNRTLLER R ML  A L + FW EA+ TA ++IN SP  ++    P ++W  K   
Sbjct: 535  AERMNRTLLERTRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIGLKTPMEMWNGKPSN 594

Query: 2978 YSHLRVFGCKAYVHVPNDERSKLDSKTRQCIFVGYGEDQFGYRFYDPVDKKLIRSRDVVF 2799
            YS L VFGC  YV   + ER+KLD K+R+CIF+GY ++  GYR +DP  +K++ SRDVVF
Sbjct: 595  YSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVF 654

Query: 2798 VEDQTIEDIQKAQETTSHQGYXXXXXXXXXXXXXXXPANEVQGNNFEGNPXXXXXXXXXX 2619
             E +    +QK QE  S                      E+ G + E +           
Sbjct: 655  AETE----LQKEQENDS--------------TIKDTSIVEIGGKSKEDDTSEAEQ----- 691

Query: 2618 XDTIETDHHGSPEVQPAPVRRSTRD-RNPS--TDYI--------LLTDGGESESFREAVE 2472
                E D     E     VRR+TR  + PS  +DY+        LLT+ GE  +F+EA+ 
Sbjct: 692  ----EHDEQEPNEDNDGDVRRTTRQTKKPSWHSDYVMASHDAYCLLTEEGEPSTFQEALR 747

Query: 2471 SDDKQCLMDVMKEEIKSLHDNHTFDLVKLPKGKKALRNRWVYKQKQDENAKKPRYKARLV 2292
            S D    M  M EEI++LH N T++LV LPKG+KA+  +WVYK K+D N +  RY+ARLV
Sbjct: 748  SSDVSQWMAAMHEEIEALHRNKTWELVDLPKGRKAIGCKWVYKIKRDGNDQVERYRARLV 807

Query: 2291 VKGCNQKEGIDFEEIFSPVVKMSSIRVILGLASNLDLEIEQLDVKTVFLHGDLEEDIYME 2112
            VKG  QKEGIDF EIFSPVV++++IRV+L + +  +L +EQLDVKT FLHG+L+E+IYM 
Sbjct: 808  VKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAAFNLHLEQLDVKTAFLHGELQEEIYML 867

Query: 2111 QPEDFKVSGKEDYVCKLKKSLYGLKQTPRQWYRKFDSFMGEQGYKKTSCDHCVFLKRFDD 1932
            QPE FK  GKE+ VC+L KSLYGLKQ PR WY++FDSF+   GY + S DHC +  RFDD
Sbjct: 868  QPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLGYNRLSSDHCTYYNRFDD 927

Query: 1931 NDFIILLLYVDDMLIVGQNTNRIVNLKEQLNKTFSMKELGPANQILGIRIIRDRKARRLW 1752
            NDFIILLLYVDDML+VG N ++I  LK QL + F MK+LGPAN+ILG++I RDRK RR+W
Sbjct: 928  NDFIILLLYVDDMLVVGPNKDQIQELKAQLAREFDMKDLGPANKILGMQIHRDRKNRRIW 987

Query: 1751 LSQEAYVNKVLQRFNMEKEKPVSTPLALHFKLSTEQCPSTAEEIKSMQNIPYASAVGSLM 1572
            LSQ+ Y+ KVL+RFNM+  KP+STPL +++KLS+   PS   E   M  +PYASAVGSLM
Sbjct: 988  LSQKNYLLKVLRRFNMQDCKPISTPLPVNYKLSSSMSPSNEAERMEMSRVPYASAVGSLM 1047

Query: 1571 YAMVCMRPDIAHAVGLVSRFLSNPGKVHWSAVKWIMRYLRATADMKLCFGSDKATLVGYS 1392
            YAM+C RPDIA AVG VSRF+++PG+ HWS VK I+RY++ T+D+ LCF   +  + GY 
Sbjct: 1048 YAMICTRPDIAQAVGAVSRFMADPGREHWSIVKRILRYIKGTSDVALCFEGSEFFVRGYV 1107

Query: 1391 DSDMAGDIDSRKFTS 1347
            DSD AGD+D RK T+
Sbjct: 1108 DSDFAGDLDKRKSTT 1122



 Score =  149 bits (376), Expect(2) = 0.0
 Identities = 67/130 (51%), Positives = 99/130 (76%)
 Frame = -1

Query: 1342 YMITFAGGAVSWQSRLQKCVALSTTESEFIAATEASKELLWMKRFVRQLGFTQKRYVLYC 1163
            Y+ T AGGAVSW S+LQ  VALSTTE+E++AAT+A KE +W++R + +LG  Q++  +YC
Sbjct: 1124 YVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEELGHKQEKITVYC 1183

Query: 1162 DNQSAVHLAKNFTFHAKFKHIDVRYHWIRDVLEAKFLEFHKIHTDDNGSDMMTKALPRGK 983
            D+QSA+H+A+N  FH++ KHI ++YH++R+V+E   ++  KIHT DN +D+MTK +   K
Sbjct: 1184 DSQSALHIARNPAFHSRTKHIGIQYHFVREVVEEGKVDMQKIHTKDNIADVMTKPVNTDK 1243

Query: 982  FEICRSLAGM 953
            F  CRSL G+
Sbjct: 1244 FTWCRSLFGL 1253


>ACL97385.1 Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  654 bits (1687), Expect(2) = 0.0
 Identities = 346/675 (51%), Positives = 456/675 (67%), Gaps = 12/675 (1%)
 Frame = -3

Query: 3335 VLDVFKQFQALAERQTGEKLKCLRSDNGGEYI-GPMDDYCK*LGIRHQRTQKKTPQLNGV 3159
            V  VFK F+A  E +TG+K+KCLR+DNGGEY+ G    +CK  GI  Q T   TPQ NGV
Sbjct: 525  VFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGV 584

Query: 3158 AERMNRTLLERIRCMLSEAKLPRQFWGEALFTAAHVINMSPCASLDGDVPDKIWFDKEVF 2979
            AERMNRTLLER R ML  A++ + FW EA+ TA +VIN SP  ++D   P ++W  K V 
Sbjct: 585  AERMNRTLLERTRAMLKTAEMAKSFWAEAVKTACYVINRSPSTTIDLKTPMEMWKGKPVD 644

Query: 2978 YSHLRVFGCKAYVHVPNDERSKLDSKTRQCIFVGYGEDQFGYRFYDPVDKKLIRSRDVVF 2799
            YS L VFGC  YV   + ER+KLD K+R+CIF+GY ++  GYR +DP  +K++ SRDVVF
Sbjct: 645  YSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVF 704

Query: 2798 VEDQTIEDIQKAQETTSHQGYXXXXXXXXXXXXXXXPANEVQGNNFEGNPXXXXXXXXXX 2619
             E++ ++  QK   T     +                ++E +  + E  P          
Sbjct: 705  AENE-LQSEQKNDST-----FKETAILQIEEKSKESDSSEAESVHEEQEP---------- 748

Query: 2618 XDTIETDHHGSPEVQPAPVRRSTRD-RNPS--TDYI--------LLTDGGESESFREAVE 2472
                +  ++G        VRRSTR  + PS  +DY+        L+ + GE  +F EA+ 
Sbjct: 749  ----DDVNNG--------VRRSTRQTQKPSWQSDYVMTGHDAYCLIAEEGEPSTFHEALN 796

Query: 2471 SDDKQCLMDVMKEEIKSLHDNHTFDLVKLPKGKKALRNRWVYKQKQDENAKKPRYKARLV 2292
              D    M  + EE+++L  N T++LV+LPKG+KA+ N+WVYK K+D N +  RY+ARLV
Sbjct: 797  GSDASQWMTAIHEEMEALRKNKTWELVELPKGRKAIGNKWVYKIKRDGNDQVERYRARLV 856

Query: 2291 VKGCNQKEGIDFEEIFSPVVKMSSIRVILGLASNLDLEIEQLDVKTVFLHGDLEEDIYME 2112
            VKG  QKEGIDF EIFSPVV++++IRV+L + + LDL +EQLDVKT FLHG+LEE+IYM 
Sbjct: 857  VKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYML 916

Query: 2111 QPEDFKVSGKEDYVCKLKKSLYGLKQTPRQWYRKFDSFMGEQGYKKTSCDHCVFLKRFDD 1932
            QPE FK  GKE+ VC+L KSLYGLKQ PR WY++FDSF+    Y + S DHC + KRFD 
Sbjct: 917  QPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYNRLSSDHCTYYKRFDG 976

Query: 1931 NDFIILLLYVDDMLIVGQNTNRIVNLKEQLNKTFSMKELGPANQILGIRIIRDRKARRLW 1752
            NDFIILLLYVDD+L+VG N +R+  LK QL + F MK+LGPAN+ILG++I RDRK R++W
Sbjct: 977  NDFIILLLYVDDILVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIW 1036

Query: 1751 LSQEAYVNKVLQRFNMEKEKPVSTPLALHFKLSTEQCPSTAEEIKSMQNIPYASAVGSLM 1572
            LSQ+ Y+ KVL+RFNM+  KP+STPL ++FKLS+   PS   E   M  +PYASAVGSLM
Sbjct: 1037 LSQKNYLRKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLM 1096

Query: 1571 YAMVCMRPDIAHAVGLVSRFLSNPGKVHWSAVKWIMRYLRATADMKLCFGSDKATLVGYS 1392
            YAM+C RPDIA AVG+VSRF+++PGK HW+AVK IMRY++ T+ + +CFG  + T+ GY 
Sbjct: 1097 YAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSELTVRGYV 1156

Query: 1391 DSDMAGDIDSRKFTS 1347
            DSD AGD D RK T+
Sbjct: 1157 DSDFAGDHDKRKSTT 1171



 Score =  148 bits (373), Expect(2) = 0.0
 Identities = 67/130 (51%), Positives = 98/130 (75%)
 Frame = -1

Query: 1342 YMITFAGGAVSWQSRLQKCVALSTTESEFIAATEASKELLWMKRFVRQLGFTQKRYVLYC 1163
            Y+ T  GGAVSW S+LQ  VALSTTE+E++AAT+A KE +WM+R + +LG  Q++  +YC
Sbjct: 1173 YVFTLTGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYC 1232

Query: 1162 DNQSAVHLAKNFTFHAKFKHIDVRYHWIRDVLEAKFLEFHKIHTDDNGSDMMTKALPRGK 983
            D+QSA+H+A+N  FH++ KHI V+YH++R+V+E   ++  KIHT+DN +D+MTK +   K
Sbjct: 1233 DSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVMTKPINADK 1292

Query: 982  FEICRSLAGM 953
            F  CRS  G+
Sbjct: 1293 FVWCRSSYGL 1302


>ACL97387.1 Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  658 bits (1698), Expect(2) = 0.0
 Identities = 347/676 (51%), Positives = 449/676 (66%), Gaps = 13/676 (1%)
 Frame = -3

Query: 3335 VLDVFKQFQALAERQTGEKLKCLRSDNGGEYI-GPMDDYCK*LGIRHQRTQKKTPQLNGV 3159
            V  VFK+F+A  E +TG+++KCLR+DNGGEY  G    +CK  GI  Q T   TPQ NGV
Sbjct: 525  VYSVFKEFKAQVELETGKRIKCLRTDNGGEYTDGDFLAFCKQEGITRQFTVAHTPQQNGV 584

Query: 3158 AERMNRTLLERIRCMLSEAKLPRQFWGEALFTAAHVINMSPCASLDGDVPDKIWFDKEVF 2979
            AERMNRTLLER R ML  A L + FW EA  TA +VIN SP  ++    P ++W  K   
Sbjct: 585  AERMNRTLLERTRAMLKTAGLAKSFWAEAAKTACYVINRSPSTAIGLKTPMEMWKGKPGD 644

Query: 2978 YSHLRVFGCKAYVHVPNDERSKLDSKTRQCIFVGYGEDQFGYRFYDPVDKKLIRSRDVVF 2799
            YS LRVFGC  YV   + ER+KLD K+R+C F+GY ++  GYR +DP  +K+  SRDV+F
Sbjct: 645  YSSLRVFGCPVYVMYNSQERTKLDPKSRRCTFLGYADNVKGYRLWDPTARKIFVSRDVIF 704

Query: 2798 VEDQTIEDIQKAQETTSHQGYXXXXXXXXXXXXXXXPANEVQGN-NFEGNPXXXXXXXXX 2622
            VE++ ++  QK   TT                       E  G  N E  P         
Sbjct: 705  VENE-LQKEQKNDGTTKETA--------------TVEIEEKSGEENSEAEP--------- 740

Query: 2621 XXDTIETDHHGSPEVQPAPVRRSTRD-RNPSTD----------YILLTDGGESESFREAV 2475
                 E +     EV  A  RR+TR  R PS            Y LL++ GE  +F EAV
Sbjct: 741  -----EHEEQEPNEVNDAEPRRTTRQIRKPSWHSEYVMASHDAYCLLSEDGEPSTFHEAV 795

Query: 2474 ESDDKQCLMDVMKEEIKSLHDNHTFDLVKLPKGKKALRNRWVYKQKQDENAKKPRYKARL 2295
               D    M  M+EEI++LH N+T++LV+LPKG+KA+ N+WV+K K+D N +  RY+ARL
Sbjct: 796  NGSDASLWMAAMQEEIEALHRNNTWELVELPKGRKAIGNKWVFKIKRDGNDQVERYRARL 855

Query: 2294 VVKGCNQKEGIDFEEIFSPVVKMSSIRVILGLASNLDLEIEQLDVKTVFLHGDLEEDIYM 2115
            VVKG  QKEGIDF EIFSPVV++++IR++L + +  +L +EQLDVKT FLHG+LEE+IYM
Sbjct: 856  VVKGYAQKEGIDFNEIFSPVVRLTTIRIVLAMCAAFELHLEQLDVKTAFLHGELEEEIYM 915

Query: 2114 EQPEDFKVSGKEDYVCKLKKSLYGLKQTPRQWYRKFDSFMGEQGYKKTSCDHCVFLKRFD 1935
             QPE F+   +E+ VC+L KSLYGLKQ PR WY++FDSF+   GY + S DHC + KRFD
Sbjct: 916  LQPEGFEEKERENLVCRLTKSLYGLKQAPRCWYKRFDSFIMSLGYNRLSSDHCTYYKRFD 975

Query: 1934 DNDFIILLLYVDDMLIVGQNTNRIVNLKEQLNKTFSMKELGPANQILGIRIIRDRKARRL 1755
            D DFIILLLYVDDML+VG N +R+  LK QL + F MK+LGPAN+ILG++I RDRK R++
Sbjct: 976  DGDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKI 1035

Query: 1754 WLSQEAYVNKVLQRFNMEKEKPVSTPLALHFKLSTEQCPSTAEEIKSMQNIPYASAVGSL 1575
            WLSQ+ Y+ KVL+RFNM+   P+STPL +++KLS+   PS+  E   M  +PYASAVGSL
Sbjct: 1036 WLSQKNYLQKVLRRFNMQDYNPISTPLPVNYKLSSSMIPSSEAERMEMSRVPYASAVGSL 1095

Query: 1574 MYAMVCMRPDIAHAVGLVSRFLSNPGKVHWSAVKWIMRYLRATADMKLCFGSDKATLVGY 1395
            MYAM+C RPDIA AVG VSRF+++PGK HW+AVK I+RY+R T+   LCFG  + T+ GY
Sbjct: 1096 MYAMICTRPDIAQAVGTVSRFMADPGKEHWNAVKRILRYIRGTSGAALCFGGSEFTIRGY 1155

Query: 1394 SDSDMAGDIDSRKFTS 1347
             DSD AGD+D RK T+
Sbjct: 1156 VDSDFAGDLDKRKSTT 1171



 Score =  143 bits (361), Expect(2) = 0.0
 Identities = 66/130 (50%), Positives = 95/130 (73%)
 Frame = -1

Query: 1342 YMITFAGGAVSWQSRLQKCVALSTTESEFIAATEASKELLWMKRFVRQLGFTQKRYVLYC 1163
            Y+ T AGGAVSW S+LQ  VALSTTE+E++AAT+A KE +W +R + +LG  Q++  +YC
Sbjct: 1173 YVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWTQRLLEELGHKQQKITVYC 1232

Query: 1162 DNQSAVHLAKNFTFHAKFKHIDVRYHWIRDVLEAKFLEFHKIHTDDNGSDMMTKALPRGK 983
            D+ SA+H+A+N  FH++ KHI V+YH++R+V+E   +   KIHT DN +D+MTK +   K
Sbjct: 1233 DSPSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVNMQKIHTKDNLADVMTKPINSDK 1292

Query: 982  FEICRSLAGM 953
            F  CRS  G+
Sbjct: 1293 FIWCRSSYGL 1302