BLASTX nr result
ID: Angelica27_contig00016891
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Angelica27_contig00016891
(2087 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KYP77941.1 Retrovirus-related Pol polyprotein from transposon TN... 243 1e-71
KYP62517.1 Retrovirus-related Pol polyprotein from transposon TN... 239 2e-70
KYP36341.1 Retrovirus-related Pol polyprotein from transposon TN... 236 3e-69
OMO51872.1 Zinc finger, CCHC-type [Corchorus capsularis] 221 4e-62
KYP53542.1 Retrovirus-related Pol polyprotein from transposon TN... 211 1e-60
JAU16310.1 Retrovirus-related Pol polyprotein from transposon TN... 197 5e-50
ABA98861.1 retrotransposon protein, putative, Ty1-copia subclass... 186 1e-48
KYP71220.1 Retrovirus-related Pol polyprotein from transposon TN... 187 5e-47
ABA96825.1 retrotransposon protein, putative, Ty1-copia subclass... 179 3e-46
OMO50323.1 hypothetical protein CCACVL1_30507 [Corchorus capsula... 182 9e-46
KYP64673.1 Retrovirus-related Pol polyprotein from transposon TN... 180 4e-44
KYP39598.1 Retrovirus-related Pol polyprotein from transposon TN... 169 4e-43
JAT57914.1 Retrovirus-related Pol polyprotein from transposon TN... 172 1e-42
AAP53866.2 retrotransposon protein, putative, Ty1-copia subclass... 169 1e-42
AJE29370.1 putative gag protein [Coffea canephora] 169 2e-42
KHN13665.1 Retrovirus-related Pol polyprotein from transposon TN... 166 2e-42
KHN13199.1 Retrovirus-related Pol polyprotein from transposon TN... 166 4e-42
ABA97637.1 retrotransposon protein, putative, Ty1-copia subclass... 175 6e-42
KHN13198.1 Retrovirus-related Pol polyprotein from transposon TN... 165 8e-42
P10978.1 RecName: Full=Retrovirus-related Pol polyprotein from t... 174 2e-41
>KYP77941.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 270
Score = 243 bits (619), Expect = 1e-71
Identities = 125/272 (45%), Positives = 187/272 (68%), Gaps = 1/272 (0%)
Frame = -3
Query: 1347 LKSLRIDAPKYDGKTNFPMWQITIKDVLIQQGLDDA*E-ETKSKEMSDTDWAKIQKRVAS 1171
+ +L+ + P +DG+T+F +WQ TI+D L+QQGLD A + E K E+ ++DW+ IQK+ S
Sbjct: 1 MNTLKFEVPLFDGRTDFTLWQCTIQDYLVQQGLDLALQDEKKPSEIKESDWSTIQKKAVS 60
Query: 1170 TIRLALAPEVRYNMLKESTPKEIWDKLASIYASKSLTNRLNLKMELYSLKLDEAGNLHDH 991
TIRLALAP+++ +LKE++PK++WD L S +ASK+LTNRL +KM+LYSLK++E GN+ DH
Sbjct: 61 TIRLALAPQIKVTVLKETSPKKLWDTLESKFASKTLTNRLMMKMDLYSLKMEEGGNVTDH 120
Query: 990 ISCFNQLVCHLANVDEPMKGKEQAXXXXXXXXXSFKYFKQTLLIGRTTLMLDDVLKALRD 811
I+ FN++V L N E +K +EQA SFK Q++L G++TL LD+V+ L++
Sbjct: 121 INKFNEMVSRLLNAGETIKDEEQALLLLASLPKSFKPLVQSMLAGKSTLNLDEVMSTLKE 180
Query: 810 NERMTKDVVSQSGEAVLAVQSAERGRSRNRNDLQGRSKSRPSKKDISTIECYYCGKTGHM 631
++RM S +LAV S R + + L S+SR D+ST+EC+YCG+ GH+
Sbjct: 181 SQRMMGGEESFRDSHILAVDS---DRKKKGDQLGRNSRSR----DMSTVECHYCGQLGHI 233
Query: 630 QMFCPSFKEDLKSFKHMKGKNKVDDADSTHVI 535
QM CP F+EDL+S K +G++K A ST+V+
Sbjct: 234 QMRCPDFREDLQSMKEKRGRSK--GASSTNVV 263
>KYP62517.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 267
Score = 239 bits (610), Expect = 2e-70
Identities = 123/274 (44%), Positives = 187/274 (68%)
Frame = -3
Query: 1347 LKSLRIDAPKYDGKTNFPMWQITIKDVLIQQGLDDA*EETKSKEMSDTDWAKIQKRVAST 1168
+ ++++D P +DG+ +F +WQ TI+D L+QQGLD A EE K +EM D++W+ IQK+ ST
Sbjct: 1 MTTMKLDVPLFDGRIDFSLWQCTIQDYLVQQGLDCALEEEKPREMKDSEWSTIQKKAVST 60
Query: 1167 IRLALAPEVRYNMLKESTPKEIWDKLASIYASKSLTNRLNLKMELYSLKLDEAGNLHDHI 988
IRLALAP+++ +LKE++P+++W+ L S +AS +LTNRL +KM+LYSLK+++ GN+ DHI
Sbjct: 61 IRLALAPQIKVTVLKETSPRKLWNLLESKFASTTLTNRLMMKMDLYSLKMEDEGNVFDHI 120
Query: 987 SCFNQLVCHLANVDEPMKGKEQAXXXXXXXXXSFKYFKQTLLIGRTTLMLDDVLKALRDN 808
+ FN+LV L N E +K +EQA S+K Q+LL G++TL+LD+V++AL++N
Sbjct: 121 NKFNELVSRLMNAGETIKDEEQALLLLASLPKSYKSLVQSLLAGKSTLLLDEVIRALKEN 180
Query: 807 ERMTKDVVSQSGEAVLAVQSAERGRSRNRNDLQGRSKSRPSKKDISTIECYYCGKTGHMQ 628
++M S SG++ + + +ERG + D GR R KD+S ++C+YCG+ GH+Q
Sbjct: 181 QQMMGGDKS-SGDSQILLAKSERG--KKYGDQHGR---RFQPKDMSNVQCHYCGEFGHIQ 234
Query: 627 MFCPSFKEDLKSFKHMKGKNKVDDADSTHVIEDG 526
CP FKEDLK MK K K + S +DG
Sbjct: 235 FKCPEFKEDLKC---MKEKKKSIPSVSVACYDDG 265
>KYP36341.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan] KYP52429.1 Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Cajanus cajan]
Length = 267
Score = 236 bits (603), Expect = 3e-69
Identities = 123/274 (44%), Positives = 184/274 (67%)
Frame = -3
Query: 1347 LKSLRIDAPKYDGKTNFPMWQITIKDVLIQQGLDDA*EETKSKEMSDTDWAKIQKRVAST 1168
+ ++++D P +DG+ +F +WQ TI+D L+QQGLD A EE K EM D++W+ IQK+ ST
Sbjct: 1 MTTMKLDVPLFDGRIDFSLWQCTIQDYLVQQGLDCALEEEKPCEMKDSEWSTIQKKAVST 60
Query: 1167 IRLALAPEVRYNMLKESTPKEIWDKLASIYASKSLTNRLNLKMELYSLKLDEAGNLHDHI 988
IRLALAP+++ +LKE++P+++W+ L +AS +LTNRL +KM+LYSLK+++ GN+ DHI
Sbjct: 61 IRLALAPQIKVTVLKETSPRKLWNLLEGKFASTTLTNRLMMKMDLYSLKMEDEGNVFDHI 120
Query: 987 SCFNQLVCHLANVDEPMKGKEQAXXXXXXXXXSFKYFKQTLLIGRTTLMLDDVLKALRDN 808
+ FN+LV L N E +K +EQA S+K Q+LL G++TL+LD+V++AL++N
Sbjct: 121 NKFNELVSRLMNAGETIKDEEQALLILASLPKSYKSLVQSLLAGKSTLLLDEVIRALKEN 180
Query: 807 ERMTKDVVSQSGEAVLAVQSAERGRSRNRNDLQGRSKSRPSKKDISTIECYYCGKTGHMQ 628
++M S SG++ + + ERG + D GR R KD+S I+C+YCG+ GH+Q
Sbjct: 181 QQMMGGDKS-SGDSQILLAKGERG--KKYGDQHGR---RFQPKDMSNIQCHYCGEFGHIQ 234
Query: 627 MFCPSFKEDLKSFKHMKGKNKVDDADSTHVIEDG 526
CP FKEDLK MK K K + S +DG
Sbjct: 235 FKCPEFKEDLKC---MKEKKKSTPSVSVACYDDG 265
>OMO51872.1 Zinc finger, CCHC-type [Corchorus capsularis]
Length = 377
Score = 221 bits (563), Expect = 4e-62
Identities = 133/368 (36%), Positives = 201/368 (54%), Gaps = 5/368 (1%)
Frame = -3
Query: 1341 SLRIDAPKYDGKTNFPMWQITIKDVLIQQGLDDA*EETKSKEMSDTDWAKIQKRVASTIR 1162
+L+ + K++G +FPMWQ T+ ++L+QQGL DA E K M+D+ IQ++ STI
Sbjct: 9 ALKFEIEKFNGTNSFPMWQSTVTNLLVQQGLGDALEADKPAAMNDSKCRDIQRKAVSTIH 68
Query: 1161 LALAPEVRYNMLKESTPKEIWDKLASIYASKSLTNRLNLKMELYSLKLDEAGNLHDHISC 982
L+L E++YN+L TPKE+ DKL SIY SKS+TN L LK EL+ LK+ +L H++
Sbjct: 69 LSLTTEIKYNVLDVKTPKELMDKLESIYMSKSITNMLCLKRELFGLKMKVGTSLRAHLNE 128
Query: 981 FNQLVCHLANVDEPMKGKEQAXXXXXXXXXSFKYFKQTLLIGRTTLMLDDVLKALRD-NE 805
FN+LV LA+VDE MK ++A + + L++GR TL L DV A+ + NE
Sbjct: 129 FNRLVTQLASVDEVMKEVDKAVLLINSLTDRYDPVTRALMVGRKTLSLQDVTSAIFEFNE 188
Query: 804 RMTKDVVSQSGEAVLAVQSAERGRSRNRNDLQGRSKSRPSKKDISTIECYYCGKTGHMQM 625
R GRS SRP + D+S+ ECYYC + GH++
Sbjct: 189 R-------------------------------GRSSSRP-RVDMSSKECYYCHEMGHIKA 216
Query: 624 FCPSFKEDLKSFKHMKGKNK----VDDADSTHVIEDGEFLMASEDTVPGSVKNKSEWVMD 457
+C EDL F K KNK V ADS ++ LM E+ + WV D
Sbjct: 217 YCKKLMEDLGDFMKSKEKNKAGVNVAAADSEEYSDEDVVLMVQEE----KKDTRDMWVFD 272
Query: 456 SAASMHIYRDRAMFETLCTDENLSNIIMGNDEKMKVQGIGTVRLKLYNSTIKKALNVGYV 277
S S HI + F L ++ ++ M N+ + +++GIG+V+L+L++ ++K NV +V
Sbjct: 273 SVCSEHISTKKEWFSKL--EKCDKSVYMANNGEERIEGIGSVKLRLHDGSVKMLGNVSHV 330
Query: 276 PDASKNVL 253
P ++N++
Sbjct: 331 PKFTRNLI 338
>KYP53542.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 197
Score = 211 bits (536), Expect = 1e-60
Identities = 102/181 (56%), Positives = 135/181 (74%)
Frame = -3
Query: 1335 RIDAPKYDGKTNFPMWQITIKDVLIQQGLDDA*EETKSKEMSDTDWAKIQKRVASTIRLA 1156
+ + P +DGKTNF +WQ T++D+L+QQGLD A E+ K +++ +W++IQK+ STIRLA
Sbjct: 7 KFEIPLFDGKTNFMIWQCTVQDILVQQGLDQALEDEKPSNINEREWSQIQKKAVSTIRLA 66
Query: 1155 LAPEVRYNMLKESTPKEIWDKLASIYASKSLTNRLNLKMELYSLKLDEAGNLHDHISCFN 976
L PE++ N+LKE+TPK +W+KL SIYASKSLTNRL LKMELY LK++ NLHDHI+ FN
Sbjct: 67 LTPEIKCNVLKETTPKALWEKLESIYASKSLTNRLCLKMELYQLKMEIGENLHDHINHFN 126
Query: 975 QLVCHLANVDEPMKGKEQAXXXXXXXXXSFKYFKQTLLIGRTTLMLDDVLKALRDNERMT 796
QLVC L NV+E + +EQA S+K QTLL+G+T+L LD V ALR+NERM
Sbjct: 127 QLVCQLLNVNEKIYNEEQAMLLLASLPMSYKSLVQTLLVGKTSLKLDQVTSALRENERMM 186
Query: 795 K 793
K
Sbjct: 187 K 187
>JAU16310.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Noccaea caerulescens]
Length = 825
Score = 197 bits (502), Expect = 5e-50
Identities = 125/367 (34%), Positives = 197/367 (53%), Gaps = 4/367 (1%)
Frame = -3
Query: 1341 SLRIDAPKYDGKTNFPMWQITIKDVLIQQGLDDA*EETKSKEMSDTDWAKIQKRVASTIR 1162
SL+ + P++DGK NF +WQ IKD+L QQ + A E+ + + D +WA +Q++ STIR
Sbjct: 28 SLKFEIPRFDGKGNFGLWQGRIKDLLTQQKIRKALEKEQPALIDDDEWADMQEQAVSTIR 87
Query: 1161 LALAPEVRYNMLKESTPKEIWDKLASIYASKSLTNRLNLKMELYSLKLDEAGNLHDHISC 982
L L+ +V + +T KEIW+KL ++Y SKSL+++L LK LY LK+ E +L HI C
Sbjct: 88 LCLSDDVMLQVEDLTTCKEIWEKLENLYMSKSLSSKLYLKQRLYGLKMSEGSDLMQHIHC 147
Query: 981 FNQLVCHLANVDEPMKGKEQAXXXXXXXXXSFKYFKQTLLIGRTTLMLDDVLKALRDN-E 805
FNQ+V LA V ++ +++A S++ L + T+ L+ V +L+ + E
Sbjct: 148 FNQIVGDLARVGVKIEDEDKAMILLCSLPSSYETLLTALTCNKETISLETVAVSLQSHYE 207
Query: 804 RMTKDVVSQSGEAVLAVQSAERGRSRNRND--LQGRSKSRPSKKDISTIECYYCGKTGHM 631
R K S L + ERGR N+ D GRSKS+ K I CY CG GH
Sbjct: 208 RRQKTGAEGSQGDGLFANNQERGRQMNKQDGGSSGRSKSKNRAKAI----CYGCGGKGHY 263
Query: 630 QMFCPSFKEDLKSFKHMKGKNKVDDAD-STHVIEDGEFLMASEDTVPGSVKNKSEWVMDS 454
+ CP+ KGKNK A+ + H + G+ S+ S + WVMD+
Sbjct: 264 KRDCPN-----------KGKNKGKTANVAQHDSDSGD----SDLLAVMSGHHADSWVMDT 308
Query: 453 AASMHIYRDRAMFETLCTDENLSNIIMGNDEKMKVQGIGTVRLKLYNSTIKKALNVGYVP 274
AS H+ +R FET N+ ++ + +D + G GT++ K+++ I+ +V ++P
Sbjct: 309 GASFHMTPNREWFETYKAG-NVGSVQLADDRVCGIVGSGTIKFKMHDGVIRTLTDVRHIP 367
Query: 273 DASKNVL 253
+ KN++
Sbjct: 368 EVKKNLI 374
>ABA98861.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 425
Score = 186 bits (472), Expect = 1e-48
Identities = 110/363 (30%), Positives = 192/363 (52%), Gaps = 2/363 (0%)
Frame = -3
Query: 1335 RIDAPKYDGKTNFPMWQITIKDVLIQQGLDDA*EETKSKEMSDTDWAKIQKRVASTIRLA 1156
+ + K+DG NF +WQ+ +KD+L QQG+ A EET ++M W +++ + A+TIRL+
Sbjct: 8 KFEVVKFDGTGNFILWQMRLKDLLAQQGISKALEETMPEKMDAGKWEEMKAQAAATIRLS 67
Query: 1155 LAPEVRYNMLKESTPKEIWDKLASIYASKSLTNRLNLKMELYSLKLDEAGNLHDHISCFN 976
L+ V Y ++ E TPKEIWDKLAS+Y SKSLT++L LK +LY L++ E +L H+ FN
Sbjct: 68 LSDSVMYPVMDEKTPKEIWDKLASLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHVDVFN 127
Query: 975 QLVCHLANVDEPMKGKEQAXXXXXXXXXSFKYFKQTLLIGRTTLMLDDVLKAL--RDNER 802
QLV L+ +D + ++ A S+++ TL+ G+ T+ ++ + +L RD R
Sbjct: 128 QLVVDLSKLDVKLDDEDMAIILLCSLPPSYEHVVTTLMHGKDTVKTEEKISSLLARDLRR 187
Query: 801 MTKDVVSQSGEAVLAVQSAERGRSRNRNDLQGRSKSRPSKKDISTIECYYCGKTGHMQMF 622
K+ ++ +A + A+ G SKS+ CY C + GH++
Sbjct: 188 SNKNEAMEASQAESLLVKAKHDHE------AGVSKSKD-----KGARCYKCHEFGHIRRN 236
Query: 621 CPSFKEDLKSFKHMKGKNKVDDADSTHVIEDGEFLMASEDTVPGSVKNKSEWVMDSAASM 442
CP K+ + + DD+DS+ + E + K+ W++DSA+S
Sbjct: 237 CPLLKKRKGGIASLAARG--DDSDSS----------SHETLTVSNEKSGEAWMLDSASSY 284
Query: 441 HIYRDRAMFETLCTDENLSNIIMGNDEKMKVQGIGTVRLKLYNSTIKKALNVGYVPDASK 262
H+ R F + + + + +G+D +V G+G V+ ++Y+ +V ++P K
Sbjct: 285 HVTSKREWFSSYKSGD-FGVVYLGDDTSYRVVGVGDVKFEMYDGNEVLLSDVRHMPGLRK 343
Query: 261 NVL 253
+++
Sbjct: 344 SLI 346
>KYP71220.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 690
Score = 187 bits (475), Expect = 5e-47
Identities = 115/366 (31%), Positives = 198/366 (54%), Gaps = 5/366 (1%)
Frame = -3
Query: 1335 RIDAPKYDGKTNFPMWQITIKDVLIQQGLDDA*EETKSK--EMSDTDWAKIQKRVASTIR 1162
+ D K+DGK F +W++ +K VL Q GL A + K M+D W ++ ++ S I+
Sbjct: 6 KFDIEKFDGKICFSIWKVQMKAVLTQNGLKKALDGKAKKPVNMTDEQWDELDEKALSAIQ 65
Query: 1161 LALAPEVRYNMLKESTPKEIWDKLASIYASKSLTNRLNLKMELYSLKLDEAGNLHDHISC 982
L L+ EV + E+T +W KL S+Y +KSL N+L LK LY++++ E + H++
Sbjct: 66 LCLSKEVLREVANETTAAALWLKLESLYMTKSLANKLRLKERLYTIRMVEGTPIQSHLNE 125
Query: 981 FNQLVCHLANVDEPMKGKEQAXXXXXXXXXSFKYFKQTLLIGRT-TLMLDDVLKALRDNE 805
FN ++ L N++ + +++A ++K+FK+ +L TL +DV L E
Sbjct: 126 FNSIIMDLENIEIKIDDEDKAVLLIVSLPSTYKHFKEIMLYSNNDTLSFEDVKSNLLSKE 185
Query: 804 RMTKDVVSQSGEAVLAV--QSAERGRSRNRNDLQGRSKSRPSKKDISTIECYYCGKTGHM 631
+ D+ S+ L+V ++ E+G + N+ + RSKSR K S C YC K GH
Sbjct: 186 KFDLDIHSEDKGEGLSVRGRTQEKGSTSNK---KSRSKSRGRK---SNKTCRYCKKFGHD 239
Query: 630 QMFCPSFKEDLKSFKHMKGKNKVDDADSTHVIEDGEFLMASEDTVPGSVKNKSEWVMDSA 451
C K+ K + KGKN +A + DG+ ++ +V ++K+EW++DS
Sbjct: 240 ISDCFILKK--KQERQEKGKNPA-EAANVETDSDGDVMI----SVSSDKRSKTEWILDSG 292
Query: 450 ASMHIYRDRAMFETLCTDENLSNIIMGNDEKMKVQGIGTVRLKLYNSTIKKALNVGYVPD 271
+ H+ + +F TL + ++MGND + K+ GIGT+++K ++ TIK NV ++PD
Sbjct: 293 CTFHMCPYKDLFTTL-EPVDSGVVLMGNDTQCKIAGIGTIQIKTHDGTIKTLSNVRFIPD 351
Query: 270 ASKNVL 253
+N++
Sbjct: 352 LKRNLI 357
>ABA96825.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 424
Score = 179 bits (455), Expect = 3e-46
Identities = 112/371 (30%), Positives = 190/371 (51%), Gaps = 1/371 (0%)
Frame = -3
Query: 1335 RIDAPKYDGKTNFPMWQITIKDVLIQQGLDDA*EETKSKEMSDTDWAKIQKRVASTIRLA 1156
+ + K+DG NF +WQ+ +KD+L QQG+ A EET ++M W +++ + A+TIRL+
Sbjct: 8 KFEVVKFDGTGNFVLWQMRLKDLLAQQGISKALEETMPEKMDAGKWEEMKAQAAATIRLS 67
Query: 1155 LAPEVRYNMLKESTPKEIWDKLASIYASKSLTNRLNLKMELYSLKLDEAGNLHDHISCFN 976
L+ V Y ++ E T KEIW KL S+Y SKSLT++L LK +LY L++ E +L H+ FN
Sbjct: 68 LSDSVMYQVMDEKTSKEIWVKLTSLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHVDVFN 127
Query: 975 QLVCHLANVDEPMKGKEQAXXXXXXXXXSFKYFKQTLLIGRTTLMLDDVLKAL-RDNERM 799
QLV L+ +D + +++A S+++ L G+ T+ + + L RD R
Sbjct: 128 QLVVDLSKLDVKLDDEDKAIILLCSLPPSYEHVVTILTHGKDTIKTEIISSLLARDLRRS 187
Query: 798 TKDVVSQSGEAVLAVQSAERGRSRNRNDLQGRSKSRPSKKDISTIECYYCGKTGHMQMFC 619
K+ ++ +A + A+ G SKS+ CY C + GH++ C
Sbjct: 188 KKNEAMEASQAESLLVKAKHDHE------AGVSKSKE-----KGARCYKCHEFGHIRRNC 236
Query: 618 PSFKEDLKSFKHMKGKNKVDDADSTHVIEDGEFLMASEDTVPGSVKNKSEWVMDSAASMH 439
P K+ + + DD+DS+ E L S + K+ W++DSA+S H
Sbjct: 237 PLLKKRKDGIASLAARG--DDSDSS----SHEILTVSNE------KSGEAWMLDSASSYH 284
Query: 438 IYRDRAMFETLCTDENLSNIIMGNDEKMKVQGIGTVRLKLYNSTIKKALNVGYVPDASKN 259
+ R F + + + + +G+D +V G+G V+ K+Y+ +V +VP K+
Sbjct: 285 VTSKREWFSSYKSGD-FGVVYLGDDTSYRVVGVGDVKFKMYDGNEVLLSDVRHVPGLRKS 343
Query: 258 VLF*VCWHHVG 226
++ H +G
Sbjct: 344 LISLGSLHEIG 354
>OMO50323.1 hypothetical protein CCACVL1_30507 [Corchorus capsularis]
Length = 630
Score = 182 bits (463), Expect = 9e-46
Identities = 117/363 (32%), Positives = 183/363 (50%)
Frame = -3
Query: 1341 SLRIDAPKYDGKTNFPMWQITIKDVLIQQGLDDA*EETKSKEMSDTDWAKIQKRVASTIR 1162
+L+ + K++G +F MWQ TI D+L+QQGL DA E K M D W IQ++V STIR
Sbjct: 9 ALKFEIEKFNGTNSFQMWQSTITDLLVQQGLRDALEADKPSAMDDNSWKDIQRKVVSTIR 68
Query: 1161 LALAPEVRYNMLKESTPKEIWDKLASIYASKSLTNRLNLKMELYSLKLDEAGNLHDHISC 982
L+LA E++Y++L TPKE DKL SIY SKS+TN L LK EL+ LK+ E +L H++
Sbjct: 69 LSLATEIKYDVLDVKTPKEFMDKLESIYMSKSITNMLCLKRELFGLKMKEGTSLRAHLNE 128
Query: 981 FNQLVCHLANVDEPMKGKEQAXXXXXXXXXSFKYFKQTLLIGRTTLMLDDVLKALRDNER 802
FN+LV LA+VDE MK ++A + + L++GR TL L DV A+ + +R
Sbjct: 129 FNRLVTQLASVDEVMKEVDKAVLLINSLTDRYDPVTRALMVGRKTLSLQDVTFAIFEYDR 188
Query: 801 MTKDVVSQSGEAVLAVQSAERGRSRNRNDLQGRSKSRPSKKDISTIECYYCGKTGHMQMF 622
+ KKD + G ++
Sbjct: 189 L----------------------------------KETEKKDKES------GALWSVEEL 208
Query: 621 CPSFKEDLKSFKHMKGKNKVDDADSTHVIEDGEFLMASEDTVPGSVKNKSEWVMDSAASM 442
++ + MK + ++ + ED ++ E + WV DSA S
Sbjct: 209 MEEIIRMMQDQRAMKKEYQIRGLSEEYSDEDVVLMVQEE-----KKDTRDMWVFDSACSE 263
Query: 441 HIYRDRAMFETLCTDENLSNIIMGNDEKMKVQGIGTVRLKLYNSTIKKALNVGYVPDASK 262
HI + F L ++ + M N+ + K++GIG+V+L+L++ ++K NV YVP+ ++
Sbjct: 264 HICTKKEWFSKL--EKCDKPVYMANNGEEKIEGIGSVKLRLHDGSVKMLGNVRYVPNFTR 321
Query: 261 NVL 253
N++
Sbjct: 322 NLI 324
>KYP64673.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 780
Score = 180 bits (456), Expect = 4e-44
Identities = 111/368 (30%), Positives = 193/368 (52%), Gaps = 7/368 (1%)
Frame = -3
Query: 1335 RIDAPKYDGKTNFPMWQITIKDVLIQQGLDDA*--EETKSKEMSDTDWAKIQKRVASTIR 1162
+ D K+ G+ +F +W+I ++ +LIQQG +A EE S ++ + + ++ S I
Sbjct: 5 KYDIEKFSGENDFGLWRIKMEAILIQQGCAEAIKGEEKMSSSLTQKEKTNMIEKARSAII 64
Query: 1161 LALAPEVRYNMLKESTPKEIWDKLASIYASKSLTNRLNLKMELYSLKLDEAGNLHDHISC 982
L L + + +E T +W KL S+Y +KSL +RL LK LYS K+ E ++ D ++
Sbjct: 65 LCLGDKALREVAREKTAAAMWLKLESLYMTKSLAHRLCLKQRLYSFKMTETKSIVDQLAE 124
Query: 981 FNQLVCHLANVDEPMKGKEQAXXXXXXXXXSFKYFKQTLLIGR-TTLMLDDVLKALRDNE 805
FN+++ L N++ ++ +++A ++++FK +L G+ + LD+V ++R E
Sbjct: 125 FNKILDDLENIEVQLEDEDKALLLLNSLPRNYEHFKDAILYGKEQDITLDEVQTSIRTKE 184
Query: 804 --RMTKDVVSQSGEAVLAVQSAERGRSRNRNDLQGRSKSRPSKK--DISTIECYYCGKTG 637
R + +GE++ + RGRS + Q K+R K D S +C+YC K G
Sbjct: 185 LQRQQDNKTDDNGESL----NVSRGRSEKKGQSQKGKKARSKSKIGDRSKFKCFYCHKVG 240
Query: 636 HMQMFCPSFKEDLKSFKHMKGKNKVDDADSTHVIEDGEFLMASEDTVPGSVKNKSEWVMD 457
H + CP D KS ADS + + +++ V + + + +WVMD
Sbjct: 241 HFKKNCPERNRDQKS-----------SADSADIAAISDGYESADVLVVTTSQTQKDWVMD 289
Query: 456 SAASMHIYRDRAMFETLCTDENLSNIIMGNDEKMKVQGIGTVRLKLYNSTIKKALNVGYV 277
S S H+ + FETL E +++G+D +VQGIGTVRLK++++ +V YV
Sbjct: 290 SGCSYHMCPKKDYFETLKLKEG-GTVLLGDDHPCQVQGIGTVRLKMFDNREYILKDVRYV 348
Query: 276 PDASKNVL 253
PD +N++
Sbjct: 349 PDLKRNLI 356
>KYP39598.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 350
Score = 169 bits (427), Expect = 4e-43
Identities = 107/356 (30%), Positives = 171/356 (48%), Gaps = 1/356 (0%)
Frame = -3
Query: 1317 YDGKTNFPMWQITIKDVLIQQGLDDA*EETKSKEMSDTDWAKIQKRVASTIRLALAPEVR 1138
+DG +F MWQ + D L QQGLD E K + M + DW + + TIR L+ E +
Sbjct: 5 FDGSGHFGMWQSEVLDALFQQGLDITIEGKKPESMGEEDWKTLNRLACGTIRSCLSREQK 64
Query: 1137 YNMLKESTPKEIWDKLASIYASKSLTNRLNLKMELYSLKLDEAGNLHDHISCFNQLVCHL 958
Y KE++ ++ +L + KS N+L++K L+ ++DHI+ FNQLV L
Sbjct: 65 YAFCKETSASKLMTELEEKFLKKSSQNKLHMKKRLFRFTYIPGATMNDHITSFNQLVADL 124
Query: 957 ANVDEPMKGKEQAXXXXXXXXXSFKYFKQTLLIGRTTLMLDDVLKALRDNERMTKDVVSQ 778
N+D + ++ A F++ + TLL G+ + L++V AL E KD
Sbjct: 125 LNLDVTFEDEDLALMLLGSLPEEFEFLETTLLHGKVAVSLNEVCGALYSYELRRKDKKDS 184
Query: 777 SGEAVLAVQSAERGRSRNRNDLQGRSKSRPSKKDISTIECYYCGKTGHMQMFCPSFKEDL 598
S +A A R R +G+ K SK + EC +C + GH + CP K
Sbjct: 185 SEKA----NEALVARGRPVIQAKGKKKRSKSKAKVGKDECAFCREKGHWKKDCPKLKN-- 238
Query: 597 KSFKHMKGKNK-VDDADSTHVIEDGEFLMASEDTVPGSVKNKSEWVMDSAASMHIYRDRA 421
KG++K V D++ ++D + +A V GS + S W++DS S H+ +R
Sbjct: 239 ------KGQSKTVADSNVAEYVDDSDCSLA----VSGSTSSSSAWLLDSGCSNHMCPNRE 288
Query: 420 MFETLCTDENLSNIIMGNDEKMKVQGIGTVRLKLYNSTIKKALNVGYVPDASKNVL 253
F E + ND + GIG++RLK + I+ +V +VP S+N++
Sbjct: 289 WFYDFRELEE-GVVYTANDVPLTTHGIGSIRLKNRDGAIRTLKDVRFVPSLSRNLI 343
>JAT57914.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Anthurium amnicola]
Length = 529
Score = 172 bits (435), Expect = 1e-42
Identities = 111/367 (30%), Positives = 194/367 (52%), Gaps = 6/367 (1%)
Frame = -3
Query: 1335 RIDAPKYDGKTNFPMWQITIKDVLIQQGLDDA*E--ETKSKEMSDTDWAKIQKRVASTIR 1162
+ + K+D +F +WQ+ ++ +L QQGL A E S +S + + +R + I+
Sbjct: 4 KFEIEKFDRNISFGIWQVKMRAILTQQGLQKALLGIEKMSSTLSQEEKQDMDERALAVIQ 63
Query: 1161 LALAPEVRYNMLKESTPKEIWDKLASIYASKSLTNRLNLKMELYSLKLDEAGNLHDHISC 982
L L+ EV ++ E + +W KL S+Y +KSLT++L+LK L+ LK+ E ++ H+
Sbjct: 64 LCLSNEVLREVIHEKSAAALWLKLESLYMTKSLTSKLHLKQRLFMLKMVEGTSVKTHLDE 123
Query: 981 FNQLVCHLANVDEPMKGKEQAXXXXXXXXXSFKYFKQTLLIGRTTLMLDDVLKALRDNER 802
FN ++ L N++ ++ ++QA SFK+F++TLL GR ++ ++DV +L E
Sbjct: 124 FNSILMDLENLEVKIEDEDQALLLLCSLPPSFKHFRETLLYGRDSISVEDVKSSLFSKEL 183
Query: 801 MTKDVVSQSGEAVLAVQSAERGRSRNRNDLQGRSKSRPSKKDISTIECYYCGKTGHMQMF 622
M +D+ S E V + RGRS+ R+ + + + R ++ I C YC GH++
Sbjct: 184 MDRDLTGCSSEGV-SEGLVARGRSQERSFEKKKGERRSKSRNKFKI-CNYCKMKGHIKSE 241
Query: 621 CPSFKEDLKSFKHMKGKNKVDDADSTHVIEDGEFLMASEDTV--PGSVKNKSEWVMDSAA 448
C +K K K ++ + E G ED V +V++ EW++DS
Sbjct: 242 CYG----------LKNKQKKEEKNPEKAAEVGVAKDECEDYVLSVNAVRSNDEWILDSGY 291
Query: 447 SMHI--YRDRAMFETLCTDENLSNIIMGNDEKMKVQGIGTVRLKLYNSTIKKALNVGYVP 274
S H+ Y+DR F T D+ ++MGN+ K GIG++R+K+Y+ ++ V +V
Sbjct: 292 SYHMCPYKDR--FHTYEHDDG-GVVLMGNNAPRKTIGIGSIRIKMYDGIVRTLTQVRHVL 348
Query: 273 DASKNVL 253
D KN++
Sbjct: 349 DLKKNLI 355
>AAP53866.2 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 415
Score = 169 bits (428), Expect = 1e-42
Identities = 105/341 (30%), Positives = 178/341 (52%), Gaps = 2/341 (0%)
Frame = -3
Query: 1335 RIDAPKYDGKTNFPMWQITIKDVLIQQGLDDA*EETKSKEMSDTDWAKIQKRVASTIRLA 1156
+ + K+DG NF +WQ+ +KD+L QQG+ A +ET +++ W +++ + A+TIRL+
Sbjct: 8 KFEVVKFDGTGNFVLWQMRLKDLLAQQGISKALQETMPEKIDADKWNEMKAQAAATIRLS 67
Query: 1155 LAPEVRYNMLKESTPKEIWDKLASIYASKSLTNRLNLKMELYSLKLDEAGNLHDHISCFN 976
L+ V Y ++ E +PKEIWDKLAS++ SKSLT++L LK +LY L++ E +L H+ FN
Sbjct: 68 LSDSVMYQVMDEKSPKEIWDKLASLHMSKSLTSKLYLKQQLYGLQVQEESDLRKHVDVFN 127
Query: 975 QLVCHLANVDEPMKGKEQAXXXXXXXXXSFKYFKQTLLIGRTTLMLDDVLKAL--RDNER 802
QLV L+ +D + +++A S+++ TL G+ T+ ++++ +L RD R
Sbjct: 128 QLVVDLSKLDVKLDDEDKAIILLCSLPLSYEHVVTTLTHGKDTVKTEEIISSLLARDLRR 187
Query: 801 MTKDVVSQSGEAVLAVQSAERGRSRNRNDLQGRSKSRPSKKDISTIECYYCGKTGHMQMF 622
S+ EA A Q + G SKS+ CY C + GH++
Sbjct: 188 ------SKKNEATKASQGKSLLVKDKHDHEAGVSKSKE-----KGARCYKCHEFGHIRRN 236
Query: 621 CPSFKEDLKSFKHMKGKNKVDDADSTHVIEDGEFLMASEDTVPGSVKNKSEWVMDSAASM 442
CP K+ + + DD+DS E L S++ + W++DSA+S
Sbjct: 237 CPLLKKRKGGIASLAARG--DDSDS----GSHEILTVSDE------MSGEAWMLDSASSY 284
Query: 441 HIYRDRAMFETLCTDENLSNIIMGNDEKMKVQGIGTVRLKL 319
H+ R F + + + + +G+ +V G+G V K+
Sbjct: 285 HVTSKREWFSSYKSGD-FGVVYLGDGTSYRVVGVGDVNFKI 324
>AJE29370.1 putative gag protein [Coffea canephora]
Length = 433
Score = 169 bits (428), Expect = 2e-42
Identities = 107/359 (29%), Positives = 187/359 (52%), Gaps = 4/359 (1%)
Frame = -3
Query: 1317 YDGKTNFPMWQITIKDVLIQQGLDDA*--EETKSKEMSDTDWAKIQKRVASTIRLALAPE 1144
++G T+F +WQ +KDVL+QQGL A + K + M+D ++ ++ R ASTIRL +A
Sbjct: 13 FNGTTSFTLWQRRVKDVLVQQGLAKALNGKNKKPESMNDDEFEELDARCASTIRLYVADN 72
Query: 1143 VRYNMLKES-TPKEIWDKLASIYASKSLTNRLNLKMELYSLKLDEAGNLHDHISCFNQLV 967
+ N++ E + ++W KL +Y +KSL+N+L+LK + Y+LK+ E G+L DH++ FN ++
Sbjct: 73 IINNVIDEKDSAADLWKKLEKLYLAKSLSNKLHLKRQFYALKMVEGGSLMDHMNTFNGIL 132
Query: 966 CHLANVDEPMKGKEQAXXXXXXXXXSFKYFKQTLLIGRTTLMLDDVLKALRDNERMTKDV 787
L V ++ + +A S++ TLL G+ TL ++V +L D+E+ K
Sbjct: 133 DQLQKVGVDIEEENKALLLLTPVSDSYESVVTTLLYGKDTLEFENVQSSLLDHEKQRKAN 192
Query: 786 VSQSGEAVLAVQSAERGRSRNRNDLQGRSKSRPSK-KDISTIECYYCGKTGHMQMFCPSF 610
+ EA L RG ++ G SK+ SK K I+C+ C + GH++ +CP
Sbjct: 193 QDVTQEAALIA----RGENKRGKQFGGESKAGGSKAKRKGGIQCFGCHEFGHIKRYCP-- 246
Query: 609 KEDLKSFKHMKGKNKVDDADSTHVIEDGEFLMASEDTVPGSVKNKSEWVMDSAASMHIYR 430
H K ++ D G+ L S+ + ++ W++DS H+
Sbjct: 247 --------HQKKNDENDYDGVAGYASGGDILTISKG---NNTSSRDGWILDSGCVSHVCS 295
Query: 429 DRAMFETLCTDENLSNIIMGNDEKMKVQGIGTVRLKLYNSTIKKALNVGYVPDASKNVL 253
F+TL + + +G+ +V+G+G V++K+ N I+ V YVP +N++
Sbjct: 296 RLDYFDTL-QRKKAGFMCLGDGSTCQVKGVGVVKIKMLNGEIRSLGGVAYVPKLRRNLI 353
>KHN13665.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Glycine soja]
Length = 337
Score = 166 bits (421), Expect = 2e-42
Identities = 108/347 (31%), Positives = 177/347 (51%), Gaps = 2/347 (0%)
Frame = -3
Query: 1335 RIDAPKYDGKTNFPMWQITIKDVLIQQGLDDA*EETKS--KEMSDTDWAKIQKRVASTIR 1162
R D K+ G+ +F + +I ++ +L+ QGLDDA + +SD + + + STI
Sbjct: 4 RFDVEKFTGENDFSLRRIKMQALLVHQGLDDALQGASKLPSTLSDKEKKDLLSKAHSTII 63
Query: 1161 LALAPEVRYNMLKESTPKEIWDKLASIYASKSLTNRLNLKMELYSLKLDEAGNLHDHISC 982
L+L EV + +E + IW KL S+Y +KSLTN+L LK L+ LK++E ++ +H+S
Sbjct: 64 LSLGDEVLREVAEEKSAAGIWLKLESLYMTKSLTNKLYLKKRLHQLKMEEGSSIKEHVSL 123
Query: 981 FNQLVCHLANVDEPMKGKEQAXXXXXXXXXSFKYFKQTLLIGRTTLMLDDVLKALRDNER 802
F + V L +VD + ++QA SF+ T+L GR TL L++V KA ++
Sbjct: 124 FTKAVLDLKSVDVRIDEEDQAVMLLCSLPSSFENLVDTMLFGRDTLTLEEV-KATLNSRE 182
Query: 801 MTKDVVSQSGEAVLAVQSAERGRSRNRNDLQGRSKSRPSKKDISTIECYYCGKTGHMQMF 622
+ K + GE RGR R+ +SK++ K + CYYC K GH +
Sbjct: 183 LKKKITENKGEGGDPEALMARGRLEKRD---SKSKNKRRSKYKNEKACYYCKKEGHFRKE 239
Query: 621 CPSFKEDLKSFKHMKGKNKVDDADSTHVIEDGEFLMASEDTVPGSVKNKSEWVMDSAASM 442
CP K+ K K +D V+ DG ++E + K+ EW++DS S
Sbjct: 240 CPERKK--------KNNGKYNDESDIAVVADG--YESAEVLSISTKKHSEEWILDSGCSF 289
Query: 441 HIYRDRAMFETLCTDENLSNIIMGNDEKMKVQGIGTVRLKLYNSTIK 301
H+ + F + + + ++MGN+ V GIGT++LK+ + +K
Sbjct: 290 HMTPNLEWFSSY-KEIDGGKVLMGNNMVCNVIGIGTIKLKVQDGFVK 335
>KHN13199.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Glycine soja]
Length = 344
Score = 166 bits (419), Expect = 4e-42
Identities = 110/362 (30%), Positives = 181/362 (50%), Gaps = 6/362 (1%)
Frame = -3
Query: 1347 LKSLRIDAPKYDGKTNFPMWQITIKDVLIQQGLDDA*E--ETKSKEMSDTDWAKIQKRVA 1174
+ S + D K+ GK NF +W++ + +L QQ + A E E E++ I K+
Sbjct: 1 MSSTKFDVEKFTGKNNFNLWRVKMLALLTQQECELALEGEEMLPAELTAAQKRVIMKKAY 60
Query: 1173 STIRLALAPEVRYNMLKESTPKEIWDKLASIYASKSLTNRLNLKMELYSLKLDEAGNLHD 994
S I L+L EV + E T ++W KL S Y +KSL NRL LK +LY++++ E ++H
Sbjct: 61 SAILLSLGDEVLGEISGEKTADKLWAKLESRYMTKSLHNRLCLKKQLYTMQMHEGESIHK 120
Query: 993 HISCFNQLVCHLANVDEPMKGKEQAXXXXXXXXXSFKYFKQTLLIGRTTLMLDDVLKALR 814
HI FNQ+V L N+D + ++QA ++ F T++ GR++L +++V AL+
Sbjct: 121 HIDNFNQVVLSLKNIDVAVDDEDQAVLLLSSLPRAYDNFVDTIIFGRSSLSMEEVKTALQ 180
Query: 813 DNE---RMTKDV-VSQSGEAVLAVQSAERGRSRNRNDLQGRSKSRPSKKDISTIECYYCG 646
E R+T + SGE ++ RGR R Q R +S+ K+ + +C+ C
Sbjct: 181 SWELKRRITDSYGGTSSGEGLMV-----RGRMDERKSFQ-RRRSKSRSKNKNNNKCHNCQ 234
Query: 645 KTGHMQMFCPSFKEDLKSFKHMKGKNKVDDADSTHVIEDGEFLMASEDTVPGSVKNKSEW 466
K GH + CP K+D S G V + + G L S + N +W
Sbjct: 235 KEGHWKRNCPELKKDKVSTSEFGGAAVVSEES-----DGGNVLFVSSNV------NDDDW 283
Query: 465 VMDSAASMHIYRDRAMFETLCTDENLSNIIMGNDEKMKVQGIGTVRLKLYNSTIKKALNV 286
++DSA + H+ +R F T + ++MGND + G GTV++K+ + ++ +V
Sbjct: 284 ILDSACTFHMTPNRDWFATFQNVDG-GKVLMGNDGACSIAGKGTVQIKMNDGIVRTLTDV 342
Query: 285 GY 280
Y
Sbjct: 343 RY 344
>ABA97637.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 175 bits (443), Expect = 6e-42
Identities = 115/374 (30%), Positives = 197/374 (52%), Gaps = 9/374 (2%)
Frame = -3
Query: 1347 LKSLRIDAPKYDGKTNFPMWQITIKDVLIQQG-LDDA*EETKSKEMSDTDWAKIQKR--- 1180
+ S++ D P D KT F +WQ+ ++ VL Q LD+A E K+ T+W +KR
Sbjct: 1 MASMKYDLPLLDYKTRFSLWQVKMRAVLAQTSDLDEALESFGKKKT--TEWTTGEKRKDR 58
Query: 1179 -VASTIRLALAPEVRYNMLKESTPKEIWDKLASIYASKSLTNRLNLKMELYSLKLDEAGN 1003
S I+L L+ ++ +L+E T E+W KL SI SK LT+++++KM+L+S KL E+G+
Sbjct: 59 KALSLIQLHLSNDILQEVLQEKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLQESGS 118
Query: 1002 LHDHISCFNQLVCHLANVDEPMKGKEQAXXXXXXXXXSFKYFKQTLLIGRTTLMLDDVLK 823
+ +HIS F ++V L +++ ++ S++ F+ T+L+ R L L +V +
Sbjct: 119 VLNHISVFKEIVADLVSMEVQFDDEDLGLLLLCSLPSSYENFRDTILLSRDELTLAEVYE 178
Query: 822 ALRDNERM----TKDVVSQSGEAVLAVQSAERGRSRNRNDLQGRSKSRPSKKDISTIECY 655
AL++ E+M D S GEA L V+ R+ N ++ + +SKSR K C
Sbjct: 179 ALQNREKMKGMVQSDASSSKGEA-LQVKGRSEQRTYNDSNDRDKSKSRGRSKSRGKKFCK 237
Query: 654 YCGKTGHMQMFCPSFKEDLKSFKHMKGKNKVDDADSTHVIEDGEFLMASEDTVPGSVKNK 475
YC K H C L++ + K K S + G+ L+ G V +
Sbjct: 238 YCKKKIHFIKEC----WKLQNKEKRKSDGKASVVTSAKNSDSGDCLV----VFAGCVASH 289
Query: 474 SEWVMDSAASMHIYRDRAMFETLCTDENLSNIIMGNDEKMKVQGIGTVRLKLYNSTIKKA 295
EW++D+A S HIY +R F + + +N + MGND ++ GIG+V++K ++ +
Sbjct: 290 DEWILDTACSFHIYINRDWFSSYKSVQNGDVVRMGNDNPREIVGIGSVQIKTHDGITRTL 349
Query: 294 LNVGYVPDASKNVL 253
+V ++P ++N++
Sbjct: 350 KDVRHIPGMARNLI 363
>KHN13198.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Glycine soja]
Length = 341
Score = 165 bits (417), Expect = 8e-42
Identities = 110/358 (30%), Positives = 179/358 (50%), Gaps = 6/358 (1%)
Frame = -3
Query: 1335 RIDAPKYDGKTNFPMWQITIKDVLIQQGLDDA*E--ETKSKEMSDTDWAKIQKRVASTIR 1162
+ D K+ GK NF +W++ + +L QQ + A E E EM+ I K+ S I
Sbjct: 2 KFDVEKFTGKNNFNLWRVKMLALLTQQECELALEGEEMLPAEMTAAQKRVIMKKAYSAIL 61
Query: 1161 LALAPEVRYNMLKESTPKEIWDKLASIYASKSLTNRLNLKMELYSLKLDEAGNLHDHISC 982
L+L EV + E T ++W KL S Y +KSL NRL LK +LY++++ E ++H HI
Sbjct: 62 LSLGDEVLGEVSGEKTADKLWAKLESRYMTKSLHNRLCLKKQLYTMQMHEGESIHKHIDN 121
Query: 981 FNQLVCHLANVDEPMKGKEQAXXXXXXXXXSFKYFKQTLLIGRTTLMLDDVLKALRDNE- 805
FNQ+V L N+D + ++QA ++ F T++ GR++L +++V AL+ E
Sbjct: 122 FNQVVLSLKNIDVAVDDEDQAVLLLSSLPRAYDNFVDTIIFGRSSLSMEEVKTALQSWEL 181
Query: 804 --RMTKDV-VSQSGEAVLAVQSAERGRSRNRNDLQGRSKSRPSKKDISTIECYYCGKTGH 634
R+T + SGE ++ RGR R Q R +S+ K+ + +C+ C K GH
Sbjct: 182 KRRITDSYGGTSSGEGLMV-----RGRMDERKSFQ-RRRSKSRSKNKNNNKCHNCQKEGH 235
Query: 633 MQMFCPSFKEDLKSFKHMKGKNKVDDADSTHVIEDGEFLMASEDTVPGSVKNKSEWVMDS 454
+ CP K+D S G V + + G L S + N +W++DS
Sbjct: 236 WKRNCPELKKDKVSTSEFGGAAVVSEES-----DGGNVLFVSSNV------NDDDWILDS 284
Query: 453 AASMHIYRDRAMFETLCTDENLSNIIMGNDEKMKVQGIGTVRLKLYNSTIKKALNVGY 280
A + H+ +R F T + ++MGND + G GTV++K+ + ++ +V Y
Sbjct: 285 ACTFHMTPNRDWFATFQNVDG-GKVLMGNDGACSIAGKGTVQIKMNDGIVRTLTDVRY 341
>P10978.1 RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease CAA32025.1 unnamed protein product
[Nicotiana tabacum]
Length = 1328
Score = 174 bits (440), Expect = 2e-41
Identities = 122/384 (31%), Positives = 194/384 (50%), Gaps = 7/384 (1%)
Frame = -3
Query: 1347 LKSLRIDAPKYDGKTNFPMWQITIKDVLIQQGLDDA*EETKSKE--MSDTDWAKIQKRVA 1174
+ ++ + K++G F WQ ++D+LIQQGL + K M DWA + +R A
Sbjct: 1 MSGVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAA 60
Query: 1173 STIRLALAPEVRYNMLKESTPKEIWDKLASIYASKSLTNRLNLKMELYSLKLDEAGNLHD 994
S IRL L+ +V N++ E T + IW +L S+Y SK+LTN+L LK +LY+L + E N
Sbjct: 61 SAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLS 120
Query: 993 HISCFNQLVCHLANVDEPMKGKEQAXXXXXXXXXSFKYFKQTLLIGRTTLMLDDVLKALR 814
H++ FN L+ LAN+ ++ +++A S+ T+L G+TT+ L DV AL
Sbjct: 121 HLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTSALL 180
Query: 813 DNERMTKDVVSQSGEAVLAVQSAERGRSRNR-NDLQGRSKSRPSKKDIS---TIECYYCG 646
NE+M K +Q G+A++ + RGRS R ++ GRS +R K+ S CY C
Sbjct: 181 LNEKMRKKPENQ-GQALI---TEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCN 236
Query: 645 KTGHMQMFCPSFKEDLKSFKHMKGKNKVDDADSTHVIEDGEFLMASEDTVPGSVKN-KSE 469
+ GH + CP+ + K G+ D+ + D L +E+ + +SE
Sbjct: 237 QPGHFKRDCPNPR---KGKGETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLSGPESE 293
Query: 468 WVMDSAASMHIYRDRAMFETLCTDENLSNIIMGNDEKMKVQGIGTVRLKLYNSTIKKALN 289
WV+D+AAS H R +F + + MGN K+ GIG + +K +
Sbjct: 294 WVVDTAASHHATPVRDLFCRYVAGD-FGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKD 352
Query: 288 VGYVPDASKNVLF*VCWHHVGTDS 217
V +VPD N++ + G +S
Sbjct: 353 VRHVPDLRMNLISGIALDRDGYES 376