BLASTX nr result

ID: Angelica23_contig00045927 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Angelica23_contig00045927
         (222 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003605075.1| Pre-mRNA-splicing factor ATP-dependent RNA h...    67   1e-09
emb|CBI36896.3| unnamed protein product [Vitis vinifera]               67   2e-09
ref|XP_002268905.1| PREDICTED: probable ATP-dependent RNA helica...    62   4e-08
ref|XP_002302733.1| predicted protein [Populus trichocarpa] gi|2...    62   5e-08
ref|XP_004162448.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP...    60   1e-07

>ref|XP_003605075.1| Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Medicago
           truncatula] gi|355506130|gb|AES87272.1|
           Pre-mRNA-splicing factor ATP-dependent RNA helicase
           PRP16 [Medicago truncatula]
          Length = 1331

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 37/63 (58%), Positives = 43/63 (68%), Gaps = 4/63 (6%)
 Frame = +2

Query: 41  DRRNEYPTG----ISNLVNGHSSRVRTAPIVVHVSRPMEIENTRKGLPIVMMEQEIMEAI 208
           DR+NE PT     +SNL +  + R  T P VVHV RP E++  RK LPIVMMEQEIMEAI
Sbjct: 226 DRKNENPTTNFNELSNLPHVSTQRPLTTPTVVHVYRPPEVQEKRKDLPIVMMEQEIMEAI 285

Query: 209 NEN 217
           N N
Sbjct: 286 NYN 288


>emb|CBI36896.3| unnamed protein product [Vitis vinifera]
          Length = 1098

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 39/72 (54%), Positives = 45/72 (62%), Gaps = 11/72 (15%)
 Frame = +2

Query: 35  IMDRRNEYPT-----------GISNLVNGHSSRVRTAPIVVHVSRPMEIENTRKGLPIVM 181
           + DRRN  PT           G SNL +     + T P VVHVSRP E+EN RK LPIVM
Sbjct: 185 MQDRRNSTPTSTTADGQKNIKGTSNLPDCSLQPI-TTPTVVHVSRPTEVENNRKDLPIVM 243

Query: 182 MEQEIMEAINEN 217
           MEQEIMEAIN++
Sbjct: 244 MEQEIMEAINDH 255


>ref|XP_002268905.1| PREDICTED: probable ATP-dependent RNA helicase DHX37-like [Vitis
           vinifera]
          Length = 1414

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 33/51 (64%), Positives = 38/51 (74%)
 Frame = +2

Query: 65  GISNLVNGHSSRVRTAPIVVHVSRPMEIENTRKGLPIVMMEQEIMEAINEN 217
           G SNL +     + T P VVHVSRP E+EN RK LPIVMMEQEIMEAIN++
Sbjct: 325 GTSNLPDCSLQPI-TTPTVVHVSRPTEVENNRKDLPIVMMEQEIMEAINDH 374


>ref|XP_002302733.1| predicted protein [Populus trichocarpa] gi|222844459|gb|EEE82006.1|
           predicted protein [Populus trichocarpa]
          Length = 1130

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 40/79 (50%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
 Frame = +2

Query: 2   SNASSVPEVEK---IMDRRNEYPT----GISNLVNGHSSRVRTAPIVVHVSRPMEIENTR 160
           S ASS  +  K   +M + NE  T      SN  +    R  T P VVHVSRP E+E  R
Sbjct: 108 SQASSDHDARKTSSLMGKLNESSTVDLGKASNFPDFPLPRPPTTPTVVHVSRPDEVEKKR 167

Query: 161 KGLPIVMMEQEIMEAINEN 217
           K LPI+MMEQEIMEAINE+
Sbjct: 168 KDLPIIMMEQEIMEAINEH 186


>ref|XP_004162448.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
           DHX37-like [Cucumis sativus]
          Length = 1333

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 30/40 (75%), Positives = 34/40 (85%)
 Frame = +2

Query: 98  RVRTAPIVVHVSRPMEIENTRKGLPIVMMEQEIMEAINEN 217
           R+ + PIVV VSRP E+E+ RK LPIVMMEQEIMEAINEN
Sbjct: 266 RLLSKPIVVPVSRPCEVEDKRKDLPIVMMEQEIMEAINEN 305


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