BLASTX nr result

ID: Angelica23_contig00040918 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Angelica23_contig00040918
         (364 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002439130.1| hypothetical protein SORBIDRAFT_09g001100 [S...    64   1e-08
ref|XP_002283100.1| PREDICTED: E3 ubiquitin-protein ligase RING1...    63   3e-08
ref|XP_002531557.1| zinc finger protein, putative [Ricinus commu...    62   4e-08
ref|XP_002309072.1| predicted protein [Populus trichocarpa] gi|2...    59   4e-07

>ref|XP_002439130.1| hypothetical protein SORBIDRAFT_09g001100 [Sorghum bicolor]
           gi|241944415|gb|EES17560.1| hypothetical protein
           SORBIDRAFT_09g001100 [Sorghum bicolor]
          Length = 413

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 42/137 (30%), Positives = 54/137 (39%), Gaps = 17/137 (12%)
 Frame = +2

Query: 5   STEPSHWCHSCNSFVRVQED--SVCCVDCGGGFVEEINXXXXXXXXXXXXXXXXXXXXXD 178
           S+  S+WC+ C+ FVR      S  C  CGGGF+EE+                       
Sbjct: 15  SSSSSYWCYQCDRFVRATAAPASPACPSCGGGFLEEMGAPPPPRPAYLRRHRAHNHHHHH 74

Query: 179 HSHYSHMTVGAIASEFNHAVGQSIADATSFRPLFYPFIVLRRTDET-------------- 316
           H H+ H+   A       A   +     S    F P IVLRR+  T              
Sbjct: 75  HHHHHHIAAAAADLRPRRARRGASGSTDSRASPFNPVIVLRRSPPTTAADGSSSPTATAG 134

Query: 317 -GTYELLYDDGSGLGLR 364
             T+EL YDDG+G GLR
Sbjct: 135 GSTFELFYDDGAGSGLR 151


>ref|XP_002283100.1| PREDICTED: E3 ubiquitin-protein ligase RING1-like [Vitis vinifera]
          Length = 361

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 41/125 (32%), Positives = 53/125 (42%), Gaps = 9/125 (7%)
 Frame = +2

Query: 17  SHWCHSCNSFVRV-QEDSVCCVDCGGGFVEEINXXXXXXXXXXXXXXXXXXXXXDHSHYS 193
           S+WC+SCN FVRV   D++ C DC GGF+EEI                      + +  S
Sbjct: 2   SYWCYSCNRFVRVWSHDAIVCPDCDGGFLEEIEEQPRRPHRFPAAAMYMIENRPNSAQNS 61

Query: 194 HMTVGAIASEFNHAVGQSIADATSFRPLFYPFIVLRRT--------DETGTYELLYDDGS 349
           H  V            + I      R  F P IV+R T         + G ++L YDDG 
Sbjct: 62  HSAV------------RRIRRGRGDRSPFNPVIVMRGTADEGGGEGGDRGAFDLYYDDGG 109

Query: 350 GLGLR 364
           G GLR
Sbjct: 110 GSGLR 114


>ref|XP_002531557.1| zinc finger protein, putative [Ricinus communis]
           gi|223528818|gb|EEF30823.1| zinc finger protein,
           putative [Ricinus communis]
          Length = 356

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 44/124 (35%), Positives = 60/124 (48%), Gaps = 8/124 (6%)
 Frame = +2

Query: 17  SHWCHSCNSFVRVQ----EDSVCCVDCGGGFVEEINXXXXXXXXXXXXXXXXXXXXXDHS 184
           S WC+ CN F+RV+    +DS+ C DCGGGF+EEI                       HS
Sbjct: 9   SFWCYRCNRFIRVRVPSIQDSISCPDCGGGFIEEIG-------------------TPSHS 49

Query: 185 --HYSHMTVGAIASEFNHAVGQSIADATSFRPLFYPFIVLR--RTDETGTYELLYDDGSG 352
             H+ H       +  +H + +S AD + F P+    IVLR      +  +EL YDDG+G
Sbjct: 50  PLHHHHR---RFPNNSDHRLRRS-ADRSPFNPV----IVLRGPPAANSSNFELYYDDGAG 101

Query: 353 LGLR 364
            GLR
Sbjct: 102 SGLR 105


>ref|XP_002309072.1| predicted protein [Populus trichocarpa] gi|222855048|gb|EEE92595.1|
           predicted protein [Populus trichocarpa]
          Length = 311

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 41/124 (33%), Positives = 54/124 (43%), Gaps = 4/124 (3%)
 Frame = +2

Query: 5   STEPSHWCHSCNSFVRVQ-EDSVCCVDCGGGFVEEINXXXXXXXXXXXXXXXXXXXXXDH 181
           S E S WC+ CN  +R+  +DS+ C DCGGGF+EEI                        
Sbjct: 4   SIESSFWCYRCNRSIRLPTQDSILCPDCGGGFIEEIGITRPHHRLTA------------- 50

Query: 182 SHYSHMTVGAIASEFNHAVGQSIADATSFRPLFYPFIVLR--RTD-ETGTYELLYDDGSG 352
           +H + +  G   S FN                  P I+LR   TD  +G +EL YDDG+ 
Sbjct: 51  AHRTRLRTGGDHSPFN------------------PVIILRGATTDLASGNFELYYDDGAA 92

Query: 353 LGLR 364
            GLR
Sbjct: 93  SGLR 96


Top