BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Angelica23_contig00039040
         (367 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitoc...    89   4e-16
emb|CBI18448.3| unnamed protein product [Vitis vinifera]               89   4e-16
ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [...    85   5e-15
ref|XP_002887761.1| hypothetical protein ARALYDRAFT_477057 [Arab...    75   7e-12
ref|XP_004158518.1| PREDICTED: RNA pseudourine synthase 3, mitoc...    74   1e-11

>ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Vitis
           vinifera]
          Length = 479

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 58/129 (44%), Positives = 74/129 (57%), Gaps = 9/129 (6%)
 Frame = +3

Query: 6   LRFYSRISTPPPNCTPKSHTVVRVSPKTNIAQLGPPRKNEHKPRQLLTXXXXXXXXXXXX 185
           +R YSRI+ P P     +  V+RVS   N+AQLG P++   KPRQLL+            
Sbjct: 16  VRHYSRIAPPRP---ASAAPVIRVS--NNVAQLGSPKEGP-KPRQLLSLPPFPAHPLPGK 69

Query: 186 X---------RVTAISWMKFYFQEIDDLVIQSHFKKGLVHIDDDNRSDGLSLYKQGQMDH 338
                      VTAISW+K+YF EI   V+QSHF KGLVH++  N  D  SL K+GQ+  
Sbjct: 70  SLVNVSGLPTHVTAISWIKYYFDEIPGSVVQSHFNKGLVHMERSNLDDS-SLEKEGQIKP 128

Query: 339 LRKIRHNEV 365
           LRKI+ NEV
Sbjct: 129 LRKIKPNEV 137


>emb|CBI18448.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 58/129 (44%), Positives = 74/129 (57%), Gaps = 9/129 (6%)
 Frame = +3

Query: 6   LRFYSRISTPPPNCTPKSHTVVRVSPKTNIAQLGPPRKNEHKPRQLLTXXXXXXXXXXXX 185
           +R YSRI+ P P     +  V+RVS   N+AQLG P++   KPRQLL+            
Sbjct: 16  VRHYSRIAPPRP---ASAAPVIRVS--NNVAQLGSPKEGP-KPRQLLSLPPFPAHPLPGK 69

Query: 186 X---------RVTAISWMKFYFQEIDDLVIQSHFKKGLVHIDDDNRSDGLSLYKQGQMDH 338
                      VTAISW+K+YF EI   V+QSHF KGLVH++  N  D  SL K+GQ+  
Sbjct: 70  SLVNVSGLPTHVTAISWIKYYFDEIPGSVVQSHFNKGLVHMERSNLDDS-SLEKEGQIKP 128

Query: 339 LRKIRHNEV 365
           LRKI+ NEV
Sbjct: 129 LRKIKPNEV 137


>ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223533842|gb|EEF35573.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 468

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 58/123 (47%), Positives = 72/123 (58%), Gaps = 4/123 (3%)
 Frame = +3

Query: 9   RFYSRISTPPPNCTPKSHTVVRVSPKTNIAQLGPPRKNEHKPRQLLTXXXXXXXXXXXXX 188
           R YSRI+ PPP     ++ V+RVS   N+A LG P K+  KPRQLL+             
Sbjct: 15  RSYSRIAPPPP---AYANPVIRVS--NNVAHLGSP-KDGPKPRQLLSLPPFPGLPLPGRN 68

Query: 189 ----RVTAISWMKFYFQEIDDLVIQSHFKKGLVHIDDDNRSDGLSLYKQGQMDHLRKIRH 356
                VTAISW+K+YF EI D  IQSHF KGL HI+  N S   S+   GQM  LRKI+H
Sbjct: 69  SMASHVTAISWVKYYFDEILDSAIQSHFNKGLAHIECPNGSG--SIEYGGQMS-LRKIKH 125

Query: 357 NEV 365
           N++
Sbjct: 126 NDI 128


>ref|XP_002887761.1| hypothetical protein ARALYDRAFT_477057 [Arabidopsis lyrata subsp.
           lyrata] gi|297333602|gb|EFH64020.1| hypothetical protein
           ARALYDRAFT_477057 [Arabidopsis lyrata subsp. lyrata]
          Length = 477

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 51/130 (39%), Positives = 69/130 (53%), Gaps = 11/130 (8%)
 Frame = +3

Query: 9   RFYSRISTPPPNCTPKSHTVVRVSPKTNIAQLGPPRKNEHKPRQLLTXXXXXXXXXXXXX 188
           R YSR++ PP +       V+RV+   NIA LGPP++    PRQL++             
Sbjct: 18  RRYSRVAPPPSS-------VLRVT--NNIAHLGPPKQGP-LPRQLISLPPFPGYPLPGKN 67

Query: 189 -----------RVTAISWMKFYFQEIDDLVIQSHFKKGLVHIDDDNRSDGLSLYKQGQMD 335
                       VTAISW+KFYF+EI D  IQ+HF KGLV ++   R D     + G + 
Sbjct: 68  AGVDGDEGDSGHVTAISWVKFYFEEIHDKAIQTHFTKGLVQMEFRGRRDASRENEDGAIP 127

Query: 336 HLRKIRHNEV 365
            +RKI+HNEV
Sbjct: 128 -MRKIKHNEV 136


>ref|XP_004158518.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Cucumis
           sativus]
          Length = 471

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 51/128 (39%), Positives = 68/128 (53%), Gaps = 9/128 (7%)
 Frame = +3

Query: 9   RFYSRISTPPPNCTPKSHTVVRVSPKTNIAQLGPPRKNEHKPRQLLTXXXXXXXXXXXXX 188
           R YSRIS PPP     +  ++RVS   NIAQLG P++   K RQLL+             
Sbjct: 14  RCYSRISPPPP---AYAKPIIRVS--NNIAQLGSPKEGP-KARQLLSLPPFPGYPLPGKN 67

Query: 189 RV---------TAISWMKFYFQEIDDLVIQSHFKKGLVHIDDDNRSDGLSLYKQGQMDHL 341
           +V         TAI W+K+YF EI D  IQSHF+KGLV ++         L ++G +  +
Sbjct: 68  QVGVSGESTHVTAIRWVKYYFDEIQDSQIQSHFRKGLVQVECPQLG---GLDEKGNLKPM 124

Query: 342 RKIRHNEV 365
           RKIR  E+
Sbjct: 125 RKIRSGEI 132