BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Angelica23_contig00037088
         (736 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   127   4e-33
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   118   1e-31
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   118   6e-31
gb|ABB46931.2| retrotransposon protein, putative, unclassified [...   118   1e-30
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam...   112   2e-30

>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 1223

 Score =  127 bits (318), Expect(2) = 4e-33
 Identities = 66/156 (42%), Positives = 95/156 (60%), Gaps = 11/156 (7%)
 Frame = +1

Query: 301 IPDNLTLPAITELQAAL-----------LTSPYTADDIFRNFTSMAKNRSPGPDGFTTDF 447
           IP++     ITELQ  L           L  P TA++I +    M  ++SPGPDG+T++F
Sbjct: 421 IPNDFEGVTITELQQLLPVRCSDADQQSLIRPVTAEEIRKVLFRMPSDKSPGPDGYTSEF 480

Query: 448 FLATWKIVGDDVVRGIQHFFSTFSLPRIVNLAANCLVPKLPNPSEMKHFRPISYCNVIYK 627
           F ATW+I+GD+    +Q FF+   LP+ +N     L+PK     EMK +RPIS CNV+YK
Sbjct: 481 FKATWEIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEAREMKDYRPISCCNVLYK 540

Query: 628 CISKLLARRLKLIIPSIVSTCQSEFVPKRSIGDNIL 735
            ISK++A RLKL++P  ++  QS FV  R + +N+L
Sbjct: 541 VISKIIANRLKLVLPKFIAGNQSAFVKDRLLIENLL 576



 Score = 40.8 bits (94), Expect(2) = 4e-33
 Identities = 21/71 (29%), Positives = 36/71 (50%)
 Frame = +2

Query: 56  NPTVEQFESERSLIASFSVALLKEEHFLQQKSRVKWLKFGDGNNRYFFNACKSRWNNNKI 235
           NP+    E E +  + +    + EE +L+QKS++ W + GD N + F  A  +R  +N I
Sbjct: 330 NPSSMAMEEENAAYSRWDRVAILEEKYLKQKSKLHWCQVGDQNTKAFHRAAAAREAHNTI 389

Query: 236 LSLKDANWNVK 268
             +   +  VK
Sbjct: 390 REILSNDGIVK 400


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
           72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  118 bits (295), Expect(2) = 1e-31
 Identities = 62/156 (39%), Positives = 92/156 (58%), Gaps = 11/156 (7%)
 Frame = +1

Query: 301 IPDNLTLPAITELQAAL-----------LTSPYTADDIFRNFTSMAKNRSPGPDGFTTDF 447
           IP++    A+ ELQ  L           LT+  +A++I +   SM  ++SPGPDG+T +F
Sbjct: 309 IPNDFEGIAVEELQDLLPYRCSDSDKEMLTNHVSAEEIHKVVFSMPNDKSPGPDGYTAEF 368

Query: 448 FLATWKIVGDDVVRGIQHFFSTFSLPRIVNLAANCLVPKLPNPSEMKHFRPISYCNVIYK 627
           +   W I+G + +  IQ FF+   LP+ +N     L+PK     EMK +RPIS CNV+YK
Sbjct: 369 YKGAWNIIGAEFILAIQSFFAKGFLPKGINSTILALIPKKKEAKEMKDYRPISCCNVLYK 428

Query: 628 CISKLLARRLKLIIPSIVSTCQSEFVPKRSIGDNIL 735
            ISK++A RLKL++P  +   QS FV  R + +N+L
Sbjct: 429 VISKIIANRLKLVLPKFIVGNQSAFVKDRLLIENVL 464



 Score = 44.7 bits (104), Expect(2) = 1e-31
 Identities = 23/68 (33%), Positives = 34/68 (50%)
 Frame = +2

Query: 32  QFQSSMPFNPTVEQFESERSLIASFSVALLKEEHFLQQKSRVKWLKFGDGNNRYFFNACK 211
           Q Q+    NP+    + E    A +    + EE FL+Q+S++ WL  GD NN+ F  A  
Sbjct: 210 QKQAMKMANPSPSSMQEENEAYAKWDHIAVLEEKFLKQRSKLHWLDIGDRNNKAFHRAVV 269

Query: 212 SRWNNNKI 235
           +R   N I
Sbjct: 270 AREAQNSI 277


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  118 bits (296), Expect(2) = 6e-31
 Identities = 67/162 (41%), Positives = 93/162 (57%), Gaps = 5/162 (3%)
 Frame = +1

Query: 265 KILLGSVSPVLSIPDNLTLPAITELQA-----ALLTSPYTADDIFRNFTSMAKNRSPGPD 429
           K L GS S ++S      + ++T  +       LL +  +  DI   F ++  N+SPGPD
Sbjct: 408 KELFGSSSHLISAEGISQINSLTRFKCDENTRQLLEAEVSEADIKSEFFALPSNKSPGPD 467

Query: 430 GFTTDFFLATWKIVGDDVVRGIQHFFSTFSLPRIVNLAANCLVPKLPNPSEMKHFRPISY 609
           G+T++FF  TW IVG  ++  +Q FF +  L    N  A  +VPK PN   +  FRPIS 
Sbjct: 468 GYTSEFFKKTWSIVGPSLIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRITEFRPISC 527

Query: 610 CNVIYKCISKLLARRLKLIIPSIVSTCQSEFVPKRSIGDNIL 735
           CN IYK ISKLLARRL+ I+P  +S  QS FV  R + +N+L
Sbjct: 528 CNAIYKVISKLLARRLENILPLWISPSQSAFVKGRLLTENVL 569



 Score = 42.0 bits (97), Expect(2) = 6e-31
 Identities = 24/56 (42%), Positives = 30/56 (53%)
 Frame = +2

Query: 83  ERSLIASFSVALLKEEHFLQQKSRVKWLKFGDGNNRYFFNACKSRWNNNKILSLKD 250
           E+    S++   L EE FL QKSRV WLK GD N  +F     +R   N+I  L D
Sbjct: 332 EKEAHRSWAELALAEERFLCQKSRVLWLKCGDSNTTFFHRMMTARRAINEIHYLLD 387


>gb|ABB46931.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1853

 Score =  118 bits (296), Expect(2) = 1e-30
 Identities = 60/142 (42%), Positives = 83/142 (58%)
 Frame = +1

Query: 310  NLTLPAITELQAALLTSPYTADDIFRNFTSMAKNRSPGPDGFTTDFFLATWKIVGDDVVR 489
            +L  P +T+     L   ++ ++I      +   ++PGPDGF   F+   W I+ DD+VR
Sbjct: 946  SLMKPKVTDAMNEELCKTFSEEEIANALFQIGPLKAPGPDGFPGRFYQRNWAILKDDIVR 1005

Query: 490  GIQHFFSTFSLPRIVNLAANCLVPKLPNPSEMKHFRPISYCNVIYKCISKLLARRLKLII 669
             +Q FFS  ++P  VN  A  L+PK   P E+K FRPIS CNV+YK +SK L  RL+ I+
Sbjct: 1006 AVQEFFSLGTMPSGVNETAIVLIPKTEQPQELKDFRPISLCNVVYKIVSKCLVNRLRPIL 1065

Query: 670  PSIVSTCQSEFVPKRSIGDNIL 735
              +VS  QS FVP R I DN L
Sbjct: 1066 DDLVSQNQSAFVPGRLITDNAL 1087



 Score = 40.8 bits (94), Expect(2) = 1e-30
 Identities = 18/38 (47%), Positives = 24/38 (63%)
 Frame = +2

Query: 143 QKSRVKWLKFGDGNNRYFFNACKSRWNNNKILSLKDAN 256
           Q+SR+ WLK GD N R+F N    R   NKI  L+D++
Sbjct: 874 QRSRIAWLKEGDRNTRFFHNKAVWRAKKNKITKLRDSD 911


>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
            42.57) [Arabidopsis thaliana]
          Length = 1662

 Score =  112 bits (279), Expect(2) = 2e-30
 Identities = 52/138 (37%), Positives = 84/138 (60%)
 Frame = +1

Query: 322  PAITELQAALLTSPYTADDIFRNFTSMAKNRSPGPDGFTTDFFLATWKIVGDDVVRGIQH 501
            P +TE     LT   +  +I+     +  +++PGPDG T  F+ + W+IVG DV++ ++ 
Sbjct: 796  PIVTEQINDDLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVKI 855

Query: 502  FFSTFSLPRIVNLAANCLVPKLPNPSEMKHFRPISYCNVIYKCISKLLARRLKLIIPSIV 681
            FF T  + + +N    C++PK+ NP  +  +RPI+ CNV+YK ISK L  RLK  + +IV
Sbjct: 856  FFRTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIV 915

Query: 682  STCQSEFVPKRSIGDNIL 735
            S  Q+ F+P R + DN++
Sbjct: 916  SDSQAAFIPGRLVNDNVM 933



 Score = 46.6 bits (109), Expect(2) = 2e-30
 Identities = 20/48 (41%), Positives = 33/48 (68%)
 Frame = +2

Query: 107 SVALLKEEHFLQQKSRVKWLKFGDGNNRYFFNACKSRWNNNKILSLKD 250
           +VA   EE + QQKSR +W+K GD N  +F    K+R++ N+++++KD
Sbjct: 708 TVAYRDEERYWQQKSRNQWMKEGDRNTEFFHACTKTRFSVNRLVTIKD 755