BLASTX nr result
ID: Angelica23_contig00036704
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Angelica23_contig00036704
(685 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_001130435.1| serine hydroxymethyltransferase [Zea mays] g... 141 4e-60
ref|XP_002456723.1| hypothetical protein SORBIDRAFT_03g041410 [S... 140 1e-59
ref|NP_001152506.1| LOC100286146 [Zea mays] gi|195657007|gb|ACG4... 139 2e-59
ref|NP_001044960.1| Os01g0874900 [Oryza sativa Japonica Group] g... 141 1e-58
ref|XP_003564749.1| PREDICTED: serine hydroxymethyltransferase 1... 139 1e-57
>ref|NP_001130435.1| serine hydroxymethyltransferase [Zea mays]
gi|194689112|gb|ACF78640.1| unknown [Zea mays]
gi|223949119|gb|ACN28643.1| unknown [Zea mays]
gi|414879459|tpg|DAA56590.1| TPA: serine
hydroxymethyltransferase [Zea mays]
Length = 588
Score = 141 bits (356), Expect(3) = 4e-60
Identities = 69/96 (71%), Positives = 80/96 (83%)
Frame = +1
Query: 169 GNQSLRVADPDVFGVIDKEKDRQVKGIELIASKNFVCRAVVEALGSHLTNKYSEGMCGAR 348
GNQSL ADPDV ++++E DRQV+GIELIAS+NFVCRAV++ALGSHLTNKYSEG GAR
Sbjct: 128 GNQSLAEADPDVHSLMEQELDRQVRGIELIASENFVCRAVLDALGSHLTNKYSEGAPGAR 187
Query: 349 YYGGNEYIDEIENLYKDRALIAFGLKSEDWGVNVQP 456
YYGGN++ID IE L +RAL AFGL WGVNVQP
Sbjct: 188 YYGGNQHIDAIERLCHERALTAFGLDPACWGVNVQP 223
Score = 109 bits (272), Expect(3) = 4e-60
Identities = 54/85 (63%), Positives = 61/85 (71%), Gaps = 17/85 (20%)
Frame = +2
Query: 458 YSCTSANFAVFTGLLLPGDRIMGLDTPSGGNTSHGYYTPNGRKVS--------------- 592
YSCTSAN AV+TGLL P DRIMGL+ PSGG+ SHGYYTP+G+KVS
Sbjct: 224 YSCTSANLAVYTGLLQPKDRIMGLEPPSGGHVSHGYYTPSGKKVSGASIFFESMSYKVNP 283
Query: 593 --GIVDYDKLEERAVDFRPKILICG 661
G +DYDKLEERA+DF PKILICG
Sbjct: 284 QTGYIDYDKLEERAMDFHPKILICG 308
Score = 28.1 bits (61), Expect(3) = 4e-60
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 25/73 (34%)
Frame = +2
Query: 29 EKDSDEV--EEFRILGHSMCLK--RRKYDEGLCSVDQHCS-------------------- 136
E+D ++ + F +LGHS+C+K RR + G CS
Sbjct: 56 ERDDEDGGDQHFSLLGHSLCVKRPRRAGNGGGGGETSSCSSTSAALRPAKRQATGEGSGA 115
Query: 137 -LELRRKVVKAWG 172
LE RR V+AWG
Sbjct: 116 DLETRRAAVRAWG 128
>ref|XP_002456723.1| hypothetical protein SORBIDRAFT_03g041410 [Sorghum bicolor]
gi|241928698|gb|EES01843.1| hypothetical protein
SORBIDRAFT_03g041410 [Sorghum bicolor]
Length = 593
Score = 140 bits (353), Expect(3) = 1e-59
Identities = 69/96 (71%), Positives = 80/96 (83%)
Frame = +1
Query: 169 GNQSLRVADPDVFGVIDKEKDRQVKGIELIASKNFVCRAVVEALGSHLTNKYSEGMCGAR 348
GNQSL ADP V ++++E DRQV+GIELIAS+NFVCRAV++ALGSHLTNKYSEG GAR
Sbjct: 133 GNQSLAEADPAVHALMEQELDRQVRGIELIASENFVCRAVLDALGSHLTNKYSEGAPGAR 192
Query: 349 YYGGNEYIDEIENLYKDRALIAFGLKSEDWGVNVQP 456
YYGGN++ID IE L +RALIAFGL WGVNVQP
Sbjct: 193 YYGGNQHIDAIERLCHERALIAFGLDPACWGVNVQP 228
Score = 109 bits (272), Expect(3) = 1e-59
Identities = 54/85 (63%), Positives = 61/85 (71%), Gaps = 17/85 (20%)
Frame = +2
Query: 458 YSCTSANFAVFTGLLLPGDRIMGLDTPSGGNTSHGYYTPNGRKVS--------------- 592
YSCTSAN AV+TGLL P DRIMGL+ PSGG+ SHGYYTP+G+KVS
Sbjct: 229 YSCTSANLAVYTGLLQPKDRIMGLEPPSGGHVSHGYYTPSGKKVSGASIFFESMSYKVNP 288
Query: 593 --GIVDYDKLEERAVDFRPKILICG 661
G +DYDKLEERA+DF PKILICG
Sbjct: 289 QTGYIDYDKLEERAMDFHPKILICG 313
Score = 27.7 bits (60), Expect(3) = 1e-59
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 27/75 (36%)
Frame = +2
Query: 29 EKDSDEV--EEFRILGHSMCLKRRKY----------DEGLCS---------------VDQ 127
E+D ++ + F +LGHS+C+KR + D CS
Sbjct: 59 ERDDEDGGDQHFSLLGHSLCVKRPRRVVNGGGCGGGDTSSCSSTSAALRPAKRQATGEGS 118
Query: 128 HCSLELRRKVVKAWG 172
LE RR V+AWG
Sbjct: 119 GADLETRRAAVRAWG 133
>ref|NP_001152506.1| LOC100286146 [Zea mays] gi|195657007|gb|ACG47971.1| serine
hydroxymethyltransferase [Zea mays]
Length = 583
Score = 139 bits (350), Expect(3) = 2e-59
Identities = 68/96 (70%), Positives = 79/96 (82%)
Frame = +1
Query: 169 GNQSLRVADPDVFGVIDKEKDRQVKGIELIASKNFVCRAVVEALGSHLTNKYSEGMCGAR 348
GNQSL ADPDV ++++E RQV+GIELIAS+NFVCRAV++ALGSHLTNKYSEG GAR
Sbjct: 123 GNQSLAEADPDVHALMEQELSRQVRGIELIASENFVCRAVLDALGSHLTNKYSEGAPGAR 182
Query: 349 YYGGNEYIDEIENLYKDRALIAFGLKSEDWGVNVQP 456
YYGGN++ID IE L +RAL AFGL WGVNVQP
Sbjct: 183 YYGGNQHIDAIERLCHERALTAFGLDPACWGVNVQP 218
Score = 109 bits (272), Expect(3) = 2e-59
Identities = 54/85 (63%), Positives = 61/85 (71%), Gaps = 17/85 (20%)
Frame = +2
Query: 458 YSCTSANFAVFTGLLLPGDRIMGLDTPSGGNTSHGYYTPNGRKVS--------------- 592
YSCTSAN AV+TGLL P DRIMGL+ PSGG+ SHGYYTP+G+KVS
Sbjct: 219 YSCTSANLAVYTGLLQPKDRIMGLEPPSGGHVSHGYYTPSGKKVSGASIFFESMSYKVNP 278
Query: 593 --GIVDYDKLEERAVDFRPKILICG 661
G +DYDKLEERA+DF PKILICG
Sbjct: 279 QTGYIDYDKLEERAMDFHPKILICG 303
Score = 28.1 bits (61), Expect(3) = 2e-59
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 23/64 (35%)
Frame = +2
Query: 50 EEFRILGHSMCLKRRKY----------DEGLCS-------------VDQHCSLELRRKVV 160
+ F +LGHS+C+KR + + CS D LE RR V
Sbjct: 60 QHFSLLGHSLCVKRPRRAVNGGGGGGGETSSCSSPALRPAKRQAAGEDSGADLETRRAAV 119
Query: 161 KAWG 172
++WG
Sbjct: 120 RSWG 123
>ref|NP_001044960.1| Os01g0874900 [Oryza sativa Japonica Group]
gi|19386847|dbj|BAB86225.1| putative
hydroxymethyltransferase [Oryza sativa Japonica Group]
gi|20804756|dbj|BAB92441.1| putative serine
hydroxymethyltransferase [Oryza sativa Japonica Group]
gi|113534491|dbj|BAF06874.1| Os01g0874900 [Oryza sativa
Japonica Group] gi|125528561|gb|EAY76675.1| hypothetical
protein OsI_04630 [Oryza sativa Indica Group]
gi|125572826|gb|EAZ14341.1| hypothetical protein
OsJ_04263 [Oryza sativa Japonica Group]
gi|215737211|dbj|BAG96140.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 600
Score = 141 bits (355), Expect(2) = 1e-58
Identities = 69/96 (71%), Positives = 80/96 (83%)
Frame = +1
Query: 169 GNQSLRVADPDVFGVIDKEKDRQVKGIELIASKNFVCRAVVEALGSHLTNKYSEGMCGAR 348
GNQ+L ADPDV +++ E+DRQV+GIELIAS+NFVCRAV+EALGSHLTNKYSEG GAR
Sbjct: 140 GNQALAEADPDVHALMELERDRQVRGIELIASENFVCRAVLEALGSHLTNKYSEGHPGAR 199
Query: 349 YYGGNEYIDEIENLYKDRALIAFGLKSEDWGVNVQP 456
YYGGN++ID IE L +RAL AFGL WGVNVQP
Sbjct: 200 YYGGNQHIDGIERLCHERALAAFGLDPACWGVNVQP 235
Score = 111 bits (278), Expect(2) = 1e-58
Identities = 55/85 (64%), Positives = 62/85 (72%), Gaps = 17/85 (20%)
Frame = +2
Query: 458 YSCTSANFAVFTGLLLPGDRIMGLDTPSGGNTSHGYYTPNGRKVS--------------- 592
YSCTSAN AV+TGLLLP DRIMGL+ PSGG+ SHGYYTP+G+KVS
Sbjct: 236 YSCTSANLAVYTGLLLPKDRIMGLEPPSGGHVSHGYYTPSGKKVSGASIFFESLSYKVNP 295
Query: 593 --GIVDYDKLEERAVDFRPKILICG 661
G +DYDKLEERA+DF PKILICG
Sbjct: 296 QTGYIDYDKLEERAMDFHPKILICG 320
>ref|XP_003564749.1| PREDICTED: serine hydroxymethyltransferase 1-like [Brachypodium
distachyon]
Length = 586
Score = 139 bits (349), Expect(2) = 1e-57
Identities = 67/96 (69%), Positives = 80/96 (83%)
Frame = +1
Query: 169 GNQSLRVADPDVFGVIDKEKDRQVKGIELIASKNFVCRAVVEALGSHLTNKYSEGMCGAR 348
GNQ L ADPDV ++++E++RQV+GIELIAS+NFVCRAV++ALGSHLTNKYSEG GAR
Sbjct: 128 GNQPLAEADPDVHELMERERERQVRGIELIASENFVCRAVLDALGSHLTNKYSEGHPGAR 187
Query: 349 YYGGNEYIDEIENLYKDRALIAFGLKSEDWGVNVQP 456
YYGGN++ID IE L +RAL AFGL WGVNVQP
Sbjct: 188 YYGGNQHIDAIERLCHERALTAFGLDPACWGVNVQP 223
Score = 110 bits (275), Expect(2) = 1e-57
Identities = 54/85 (63%), Positives = 62/85 (72%), Gaps = 17/85 (20%)
Frame = +2
Query: 458 YSCTSANFAVFTGLLLPGDRIMGLDTPSGGNTSHGYYTPNGRKVS--------------- 592
YSCTSAN AV+TGLLLP DRIMGL+ PSGG+ SHGYYTP+G+KVS
Sbjct: 224 YSCTSANLAVYTGLLLPKDRIMGLEPPSGGHVSHGYYTPSGKKVSGASIFFESLSYKVNP 283
Query: 593 --GIVDYDKLEERAVDFRPKILICG 661
G +DYDKLE+RA+DF PKILICG
Sbjct: 284 QNGYIDYDKLEDRAMDFHPKILICG 308