BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Angelica23_contig00035510
         (458 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635274.1| PREDICTED: uncharacterized protein LOC100854...   105   4e-21
ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta...    96   4e-18
ref|XP_002316628.1| PAF1 complex component [Populus trichocarpa]...    95   7e-18
ref|XP_002305685.1| PAF1 complex component [Populus trichocarpa]...    94   9e-18
ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein...    91   7e-17

>ref|XP_003635274.1| PREDICTED: uncharacterized protein LOC100854406 [Vitis vinifera]
          Length = 493

 Score =  105 bits (262), Expect = 4e-21
 Identities = 67/119 (56%), Positives = 83/119 (69%), Gaps = 3/119 (2%)
 Frame = +3

Query: 111 YANRKHSASQIPLKKRLNHSEIDVGYRSREEAYD-GYFREXXXXXXXXXXX-LYKNEDDR 284
           Y++RK S SQ+PLKKRL+ +E D  + S EE  D G   E            LYKNEDDR
Sbjct: 54  YSSRKPSGSQVPLKKRLDPTERDDDHGSPEEGDDDGSDHEGDSSDDSDVGSDLYKNEDDR 113

Query: 285 QKLAQMTELEREMILSERSTKITDKKIQEKLR-KQKEKMSQSRKSSPPHVSSRTGVRSS 458
           Q+LAQ+TELEREMIL++R+TK TDKK+ EKLR K+ ++ +QSRK SPP   SR GVRSS
Sbjct: 114 QQLAQLTELEREMILTDRATKKTDKKLHEKLRSKRGKEKTQSRKESPPLQLSR-GVRSS 171


>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
           gi|223541691|gb|EEF43239.1| RNA polymerase-associated
           protein RTF1, putative [Ricinus communis]
          Length = 660

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 60/122 (49%), Positives = 81/122 (66%), Gaps = 6/122 (4%)
 Frame = +3

Query: 111 YANRKHSASQIPLKKRLNHSEIDVGYRSREEA-YDGYFREXXXXXXXXXXX---LYKNED 278
           Y++RK S SQ+PLKKRL+ +E D    S++E  YD    +              LYKNED
Sbjct: 54  YSSRKPSGSQVPLKKRLDPTERDDDQGSQDEGDYDDGNSDREGDSSDGSDVGEDLYKNED 113

Query: 279 DRQKLAQMTELEREMILSERSTKITDKKIQEKLR--KQKEKMSQSRKSSPPHVSSRTGVR 452
           DR+KLAQM+ELEREMILSER+ K  DK + E++R  ++ E+ ++SRK +PP  SSR GVR
Sbjct: 114 DRRKLAQMSELEREMILSERADKKGDKNLTERIRSKRESERTTRSRKETPPLPSSR-GVR 172

Query: 453 SS 458
           +S
Sbjct: 173 TS 174


>ref|XP_002316628.1| PAF1 complex component [Populus trichocarpa]
           gi|222859693|gb|EEE97240.1| PAF1 complex component
           [Populus trichocarpa]
          Length = 664

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 63/122 (51%), Positives = 82/122 (67%), Gaps = 6/122 (4%)
 Frame = +3

Query: 111 YANRKHSASQIPLKKRLNHSEIDVGYRSREEA-YD--GYFREXXXXXXXXXXX-LYKNED 278
           YA+RK S SQ+PLKKRL  +E D    S+EE  YD  G  RE            LYK+ED
Sbjct: 55  YASRKPSGSQVPLKKRLETNERDDEGGSQEEGDYDDGGSDREGESSDGSDIGDDLYKDED 114

Query: 279 DRQKLAQMTELEREMILSERSTKITDKKIQEKLRKQK--EKMSQSRKSSPPHVSSRTGVR 452
           DRQKLAQM+EL+RE+IL++R+ K  DK + EK+R ++  +K ++SRK +PP  SSR GVR
Sbjct: 115 DRQKLAQMSELDRELILADRADKKGDKHLTEKIRSKRDNDKPTRSRKETPPLPSSR-GVR 173

Query: 453 SS 458
           SS
Sbjct: 174 SS 175


>ref|XP_002305685.1| PAF1 complex component [Populus trichocarpa]
           gi|222848649|gb|EEE86196.1| PAF1 complex component
           [Populus trichocarpa]
          Length = 662

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 60/122 (49%), Positives = 80/122 (65%), Gaps = 6/122 (4%)
 Frame = +3

Query: 111 YANRKHSASQIPLKKRLNHSEIDVGYRSREEA-YDGYFREXXXXXXXXXXX---LYKNED 278
           YANRK S SQ+PLKKRL  +E D    S++E  YDG   +              LYK+ED
Sbjct: 55  YANRKPSGSQVPLKKRLETNERDGEEGSQDEGDYDGGGSDREGGSSDESDIGDDLYKDED 114

Query: 279 DRQKLAQMTELEREMILSERSTKITDKKIQEKLR--KQKEKMSQSRKSSPPHVSSRTGVR 452
           DR+KLAQM+EL+RE+IL++R+ K  DK + EK+R  +  +K ++SRK +PP  SSR GVR
Sbjct: 115 DRKKLAQMSELDRELILADRADKKGDKHLTEKIRLKRDNDKPTRSRKETPPLPSSR-GVR 173

Query: 453 SS 458
           SS
Sbjct: 174 SS 175


>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
           max]
          Length = 656

 Score = 91.3 bits (225), Expect = 7e-17
 Identities = 55/115 (47%), Positives = 75/115 (65%), Gaps = 5/115 (4%)
 Frame = +3

Query: 111 YANRKHSASQIPLKKRLNHSEIDVGYRSREEAYDGYFREXXXXXXXXXXX---LYKNEDD 281
           YA+RK S SQ+PLKKRL+ +E D    S+EEA D    +              LYK+EDD
Sbjct: 54  YASRKPSGSQVPLKKRLDPTERDDDLGSQEEADDDGRSDCDGDSSDESNIGDDLYKDEDD 113

Query: 282 RQKLAQMTELEREMILSERSTKITDKKIQEKL--RKQKEKMSQSRKSSPPHVSSR 440
           R+KL++MTEL+REMILS+R+TK  DK +  K+  +++K K++  RK SPP  SSR
Sbjct: 114 RRKLSEMTELQREMILSDRATKKDDKNLLGKIASKREKGKVAVPRKQSPPMSSSR 168