BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Angelica23_contig00033250
         (421 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub...   119   3e-25
ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   114   6e-24
emb|CBI34757.3| unnamed protein product [Vitis vinifera]              114   6e-24
ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocar...   107   8e-22
gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycope...    97   2e-18

>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
            sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
            QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Cucumis sativus]
          Length = 1469

 Score =  119 bits (298), Expect = 3e-25
 Identities = 65/159 (40%), Positives = 91/159 (57%), Gaps = 20/159 (12%)
 Frame = +3

Query: 3    QFDILYSVKDHEVSKPVDIYNLLGSQISAPGQKVKVSH----------------KVTDLS 134
            QFDILYS K HE++KPVD+YNLLG Q +   Q  K+                  K    +
Sbjct: 1280 QFDILYSGKGHELNKPVDVYNLLGGQSTCEKQNTKIESLDKNTISEKYSAQLMLKNGGST 1339

Query: 135  IKSLAK----KRELVRKDFKATHFLLMSKELRNILHKYKINQQLSEFDEGIVVAALFFHP 302
            IK L +     + ++RK         +S  LR ILHKY +N++L+E D+  ++ AL+FHP
Sbjct: 1340 IKGLKRLDSVSKSILRKFLTLNDIQKLSFALRTILHKYSLNERLNEVDKSTLMMALYFHP 1399

Query: 303  RSSEKIGSGLKEIKIGLSSKSSTSRCFLLVRTDDTIEDF 419
               EKIG G ++IK+G  SK   +RCF+L+R+D T EDF
Sbjct: 1400 HRDEKIGVGAQDIKVGSHSKYQNTRCFVLIRSDGTTEDF 1438


>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Vitis vinifera]
          Length = 1560

 Score =  114 bits (286), Expect = 6e-24
 Identities = 69/159 (43%), Positives = 89/159 (55%), Gaps = 21/159 (13%)
 Frame = +3

Query: 6    FDILYSVKDHEVSKPVDIYNLLGSQISAPGQKVKVSHKVT-------------------- 125
            FDILYS K HE+++P DIY LLGSQ S   Q +KV   +T                    
Sbjct: 1302 FDILYSAKGHELARPEDIYKLLGSQTSCHEQNLKVKVPITCYQTTTKCGAQLVYANGDSA 1361

Query: 126  DLSIKSLAKKRELVRKDFKATHFLL-MSKELRNILHKYKINQQLSEFDEGIVVAALFFHP 302
                KSL K  + V + F + + +  +S+ L+ IL KY IN QLSE D+  ++ AL+FHP
Sbjct: 1362 SKGCKSLEKISKSVLRSFLSLNDIQKLSRRLKFILQKYPINHQLSEIDKTTLMMALYFHP 1421

Query: 303  RSSEKIGSGLKEIKIGLSSKSSTSRCFLLVRTDDTIEDF 419
            R  EKIG G + IK+   SK   +RCF LVRTD T EDF
Sbjct: 1422 RRDEKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGTEEDF 1460


>emb|CBI34757.3| unnamed protein product [Vitis vinifera]
          Length = 1359

 Score =  114 bits (286), Expect = 6e-24
 Identities = 69/159 (43%), Positives = 89/159 (55%), Gaps = 21/159 (13%)
 Frame = +3

Query: 6    FDILYSVKDHEVSKPVDIYNLLGSQISAPGQKVKVSHKVT-------------------- 125
            FDILYS K HE+++P DIY LLGSQ S   Q +KV   +T                    
Sbjct: 1160 FDILYSAKGHELARPEDIYKLLGSQTSCHEQNLKVKVPITCYQTTTKCGAQLVYANGDSA 1219

Query: 126  DLSIKSLAKKRELVRKDFKATHFLL-MSKELRNILHKYKINQQLSEFDEGIVVAALFFHP 302
                KSL K  + V + F + + +  +S+ L+ IL KY IN QLSE D+  ++ AL+FHP
Sbjct: 1220 SKGCKSLEKISKSVLRSFLSLNDIQKLSRRLKFILQKYPINHQLSEIDKTTLMMALYFHP 1279

Query: 303  RSSEKIGSGLKEIKIGLSSKSSTSRCFLLVRTDDTIEDF 419
            R  EKIG G + IK+   SK   +RCF LVRTD T EDF
Sbjct: 1280 RRDEKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGTEEDF 1318


>ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocarpa]
            gi|222845329|gb|EEE82876.1| RNA polymerase IV subunit
            [Populus trichocarpa]
          Length = 1517

 Score =  107 bits (268), Expect = 8e-22
 Identities = 65/160 (40%), Positives = 86/160 (53%), Gaps = 21/160 (13%)
 Frame = +3

Query: 3    QFDILYSVKDHEVSKPVDIYNLLGSQISAPGQKVKVS-----------------HKVTDL 131
            QFDI+YS K  E SKPVD+YNLLGSQ+ +  Q  +                   HK    
Sbjct: 1313 QFDIVYSGKGLEFSKPVDVYNLLGSQMISTEQNTEFGVLDAQIYKSDKCGAQFLHKFGGC 1372

Query: 132  SIKSLAKK----RELVRKDFKATHFLLMSKELRNILHKYKINQQLSEFDEGIVVAALFFH 299
              K    K    R  +R+         MS  +R IL+KY ++QQL+E D+ +++  L+FH
Sbjct: 1373 GPKGFKVKEGIPRSFLRRLLTYDDIQRMSYTVRKILNKYSVDQQLNESDKSVLMMTLYFH 1432

Query: 300  PRSSEKIGSGLKEIKIGLSSKSSTSRCFLLVRTDDTIEDF 419
            PR  EKIG G K+IK+    +   +RCF LVRTD TIEDF
Sbjct: 1433 PRRDEKIGIGAKDIKVINHPEYQDTRCFSLVRTDGTIEDF 1472


>gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1138

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 57/157 (36%), Positives = 89/157 (56%), Gaps = 19/157 (12%)
 Frame = +3

Query: 6    FDILYSVKDHEVSKPVDIYNLLGSQISAPGQKVKVS----------------HKVTDLSI 137
            FDI+YS K +E+++ +++Y LL + ++     VKV+                 ++ DL  
Sbjct: 953  FDIMYSGKGYELAEQINVYTLLRNLVTVDTPNVKVTLGKDGGMDGMSLVRRLDRLDDLDK 1012

Query: 138  KSLAKKREL--VRKDFKATHFLLMSKELRNILHKYKINQQLSEFDEGIVVAALFFHPRSS 311
            KS   +     +R  F       +S+ L+ +L KY I ++L+E D+ + + AL FHPR +
Sbjct: 1013 KSCKSELSFTKLRSYFSFNDIKKLSQSLKQMLSKYDIGRELNEADKCLAMMALQFHPRRN 1072

Query: 312  EKIGSGL-KEIKIGLSSKSSTSRCFLLVRTDDTIEDF 419
            EKIG G  KEIKIG   +   SRCF++VR+DDT+EDF
Sbjct: 1073 EKIGKGAPKEIKIGYHQEFEGSRCFMVVRSDDTVEDF 1109