BLASTX nr result

ID: Angelica23_contig00031102 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Angelica23_contig00031102
         (688 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280704.1| PREDICTED: chloroplastic group IIA intron sp...    75   1e-11
ref|XP_002516757.1| conserved hypothetical protein [Ricinus comm...    59   7e-07

>ref|XP_002280704.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic-like [Vitis vinifera]
          Length = 1184

 Score = 75.1 bits (183), Expect = 1e-11
 Identities = 57/145 (39%), Positives = 79/145 (54%), Gaps = 13/145 (8%)
 Frame = +1

Query: 217 LPPSSNSSTFLHNSTSIP-PKIKFFS-----TFNHNRKDDKTRVKSCDPDDSFSAEVNLG 378
           L P  N S F  NS S+    I+  +     +F        T   +  PD S S++   G
Sbjct: 9   LSPIPNHSQFPSNSNSLSNSSIRILNPQRIHSFKPPPISATTTATTNHPDHSISSQPVSG 68

Query: 379 T----KLPTAPWMKRSPVLVEDKKP---SKSRKGRNFSSDGSEENEGSQSLTERVRGGRG 537
           T    K+PTAPWMK  P+L++  +    SK+R  +   S G+E+ +  +SLTE+V GGRG
Sbjct: 69  TDAAIKMPTAPWMK-GPLLLQPNEVLDLSKARPKKVAGSAGAEKPD--RSLTEKVSGGRG 125

Query: 538 KKAMNKIFRSIGKLQETHNLEEGEE 612
            KAM KI +SI KLQETH  +E +E
Sbjct: 126 AKAMKKIMQSIVKLQETHTSDETQE 150


>ref|XP_002516757.1| conserved hypothetical protein [Ricinus communis]
           gi|223544130|gb|EEF45655.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 742

 Score = 59.3 bits (142), Expect = 7e-07
 Identities = 53/160 (33%), Positives = 84/160 (52%), Gaps = 1/160 (0%)
 Frame = +1

Query: 169 ILFNFISYEAMTSIVFLPPSSNSSTFLHNSTSIPPKIKFFSTFNHNRKDDKTRVKSCDPD 348
           +   F SY  + S   L P++N S+ L+N+ +  PK      F  N+  + T +    P+
Sbjct: 5   LFLQFFSYNPIASS--LNPATNKSS-LNNAQN--PK------FATNKNTEFTLLSV--PN 51

Query: 349 DSFSAEVNLGTKLPTAPWMKRSPVLVEDKKPSKSRKGRNFSSDGSEENEGSQS-LTERVR 525
              +A +    K+PTAPWMK  P+L++  +     K RN +S  +   E S   LT +  
Sbjct: 52  SQSNAPI----KVPTAPWMK-GPLLLQPHELINLSKPRNKNSSNNANIEKSDKVLTGKES 106

Query: 526 GGRGKKAMNKIFRSIGKLQETHNLEEGEEFRKSPDQVKLD 645
           G RGKKAM KI +SI +LQE   LE+ +   ++ ++ +LD
Sbjct: 107 GVRGKKAMEKIVKSIEQLQENQALEKTQCDSQAYEKTQLD 146


Top