BLASTX nr result
ID: Angelica23_contig00026712
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Angelica23_contig00026712
(645 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN68148.1| hypothetical protein VITISV_035665 [Vitis vinifera] 80 5e-31
dbj|BAD99220.1| polypeptide with an integrase domain [Petunia x ... 77 2e-30
gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hop... 79 4e-28
dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis t... 70 2e-27
gb|AAC33963.1| contains similarity to reverse transcriptases (Pf... 77 3e-27
>emb|CAN68148.1| hypothetical protein VITISV_035665 [Vitis vinifera]
Length = 1813
Score = 80.5 bits (197), Expect(3) = 5e-31
Identities = 34/46 (73%), Positives = 42/46 (91%)
Frame = -1
Query: 645 PQQNGVVERKHRHLLDTARSLFFQSKLPIQYWGECVLTATHLINRM 508
PQQNGVVERKHRH+L+ ARSL FQS +P+++WGECVLTA +LINR+
Sbjct: 920 PQQNGVVERKHRHILNVARSLMFQSNVPLEFWGECVLTAVYLINRI 965
Score = 68.6 bits (166), Expect(3) = 5e-31
Identities = 42/111 (37%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Frame = -2
Query: 410 HNRDKFQPRAIPHAFIGYPSSQKAYKVLNLDTMDIQVSRDVVFHEQHFPFHISPNSEPKS 231
H + KF PRA F+GYP +K YKVL+L T I VSRDV F E FPFH S + +
Sbjct: 1002 HPKQKFDPRASICVFLGYPHGKKGYKVLDLQTQKISVSRDVFFRENIFPFHSSSSQSQQH 1061
Query: 230 MFQFFLPISTEFTTI----------PFDTIPHVFHNTTASTIHDTSDHTDI 108
LP+ F + P T P HN +S S +TD+
Sbjct: 1062 SPSLPLPLPISFDSTPQPISLPRFSPSSTPPLSHHNPVSS---PPSSNTDV 1109
Score = 31.6 bits (70), Expect(3) = 5e-31
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -3
Query: 496 SPFENFYTFPPPLNHLKAFGFLC 428
SPFE Y PP L HL+ FG C
Sbjct: 974 SPFEVLYNRPPSLTHLRVFGCEC 996
>dbj|BAD99220.1| polypeptide with an integrase domain [Petunia x hybrida]
Length = 492
Score = 77.4 bits (189), Expect(3) = 2e-30
Identities = 33/45 (73%), Positives = 41/45 (91%)
Frame = -1
Query: 645 PQQNGVVERKHRHLLDTARSLFFQSKLPIQYWGECVLTATHLINR 511
PQQNGVVERKHRHLL+T R+L +QS LP ++WG+C+LTAT+LINR
Sbjct: 169 PQQNGVVERKHRHLLETCRALLYQSHLPKKFWGDCLLTATYLINR 213
Score = 76.6 bits (187), Expect(3) = 2e-30
Identities = 46/96 (47%), Positives = 52/96 (54%), Gaps = 13/96 (13%)
Frame = -2
Query: 443 FWFFMFVSTLKHNRDKFQPRAIPHAFIGYPSSQKAYKVLNLDTMDIQVSRDVVFHEQHFP 264
F FVSTL +RDK PRAIP F+GYP +QK YKVLNL T + VSRDV F E FP
Sbjct: 241 FGSLCFVSTLTRHRDKLMPRAIPGVFLGYPFAQKGYKVLNLQTSQVIVSRDVKFFESIFP 300
Query: 263 FHIS-----------PNSEPKS--MFQFFLPISTEF 195
F S P +E S QFF P +F
Sbjct: 301 FSYSLPMSKLFPASFPTTEEHSPDSSQFFPPSHEDF 336
Score = 24.6 bits (52), Expect(3) = 2e-30
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 493 PFENFYTFPPPLNHLKAFGFLC 428
P++ + P +HLK+FG LC
Sbjct: 224 PYQVLFGSLPDYSHLKSFGSLC 245
>gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hopscotch polyprotein
(gb|U12626) [Arabidopsis thaliana]
Length = 1315
Score = 79.3 bits (194), Expect(3) = 4e-28
Identities = 33/46 (71%), Positives = 41/46 (89%)
Frame = -1
Query: 645 PQQNGVVERKHRHLLDTARSLFFQSKLPIQYWGECVLTATHLINRM 508
PQQN VVERKH+H+L+ ARSLFFQS +PI YWG+C+LTA +LINR+
Sbjct: 558 PQQNSVVERKHQHILNVARSLFFQSHIPISYWGDCILTAVYLINRL 603
Score = 67.0 bits (162), Expect(3) = 4e-28
Identities = 37/73 (50%), Positives = 45/73 (61%)
Frame = -2
Query: 443 FWFFMFVSTLKHNRDKFQPRAIPHAFIGYPSSQKAYKVLNLDTMDIQVSRDVVFHEQHFP 264
F + ST +R KF PRA AFIGYPS K YK+L+L+T I VSR VVFHE+ FP
Sbjct: 630 FGCLCYASTSPKDRHKFSPRAKACAFIGYPSGFKGYKLLDLETHSIIVSRHVVFHEELFP 689
Query: 263 FHISPNSEPKSMF 225
F S S+ + F
Sbjct: 690 FLGSDLSQEEQNF 702
Score = 24.6 bits (52), Expect(3) = 4e-28
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 493 PFENFYTFPPPLNHLKAFGFLC 428
PFE P +H+K FG LC
Sbjct: 613 PFEVLTKTVPTYDHIKVFGCLC 634
>dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1462
Score = 70.1 bits (170), Expect(3) = 2e-27
Identities = 30/45 (66%), Positives = 38/45 (84%)
Frame = -1
Query: 645 PQQNGVVERKHRHLLDTARSLFFQSKLPIQYWGECVLTATHLINR 511
PQQNG VERKHRH+L+ AR+L FQ++LPI++W C LTA +LINR
Sbjct: 621 PQQNGRVERKHRHILNVARALRFQARLPIEFWSYCALTAAYLINR 665
Score = 62.8 bits (151), Expect(3) = 2e-27
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 9/114 (7%)
Frame = -2
Query: 443 FWFFMFVSTLKHNRDKFQPRAIPHAFIGYPSSQKAYKVLNLDTMDIQVSRDVVFHEQHFP 264
F +V KH DKF+ R+ F+GYP ++K ++V N +T I VSRDVVF E FP
Sbjct: 693 FGCICYVHNQKHGGDKFESRSNKSIFLGYPFAKKGWRVYNFETGVISVSRDVVFRETEFP 752
Query: 263 FHISP-NSEPKSMF-------QFFLPISTEF-TTIPFDTIPHVFHNTTASTIHD 129
F S +S P S FFLP + T + T + +++++ ++D
Sbjct: 753 FPASVFDSTPDSQLSPSNADQSFFLPSELQAPTPVSITTTLELTQSSSSTNLND 806
Score = 35.8 bits (81), Expect(3) = 2e-27
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -3
Query: 496 SPFENFYTFPPPLNHLKAFGFLC 428
+PFE Y PPP+NH++ FG +C
Sbjct: 675 TPFELLYNRPPPVNHIRVFGCIC 697
>gb|AAC33963.1| contains similarity to reverse transcriptases (Pfam; rvt.hmm,
score: 11.19) [Arabidopsis thaliana]
Length = 1633
Score = 76.6 bits (187), Expect(2) = 3e-27
Identities = 33/46 (71%), Positives = 40/46 (86%)
Frame = -1
Query: 645 PQQNGVVERKHRHLLDTARSLFFQSKLPIQYWGECVLTATHLINRM 508
PQQN VVERKH+HLL+ ARSL FQS +P+QYW +CVLTA +LINR+
Sbjct: 651 PQQNSVVERKHQHLLNIARSLLFQSNVPLQYWSDCVLTAAYLINRL 696
Score = 70.9 bits (172), Expect(2) = 3e-27
Identities = 32/59 (54%), Positives = 42/59 (71%)
Frame = -2
Query: 428 FVSTLKHNRDKFQPRAIPHAFIGYPSSQKAYKVLNLDTMDIQVSRDVVFHEQHFPFHIS 252
+ ST H+R+KF PRA P F+GYPS K YKVL+L++ I ++R+VVFHE FPF S
Sbjct: 726 YASTNVHDRNKFSPRARPCVFLGYPSGYKGYKVLDLESHSISITRNVVFHETKFPFKTS 784