BLASTX nr result
ID: Angelica23_contig00025261
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Angelica23_contig00025261
(1837 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003548485.1| PREDICTED: DNA cross-link repair protein SNM... 580 e-163
ref|XP_002512800.1| DNA cross-link repair protein pso2/snm1, put... 573 e-161
ref|XP_003624539.1| DNA cross-link repair protein SNM1 [Medicago... 570 e-160
ref|NP_189302.1| DNA cross-link repair protein SNM1 [Arabidopsis... 546 e-153
emb|CAA66406.1| orf12 [Arabidopsis thaliana] 546 e-153
>ref|XP_003548485.1| PREDICTED: DNA cross-link repair protein SNM1-like [Glycine max]
Length = 505
Score = 580 bits (1494), Expect = e-163
Identities = 287/481 (59%), Positives = 348/481 (72%), Gaps = 33/481 (6%)
Frame = +2
Query: 128 VISLDDNGLPCEIEKP----EENSFAGDFYRCGTDWXXXXXXXXXXXXXXXXXXXDPEKK 295
++SLDD G P + + E++SFA DFYR GTDW K
Sbjct: 28 IVSLDDEGFPSQFPESGTASEKSSFAADFYRSGTDWSSLLLSLEDSKQSDLA---QDSGK 84
Query: 296 RLKQSNLFELWKL------------PSKTNF-----------------EASTSQVSNKKM 388
++KQ+NLF++W PSK+ S + K+
Sbjct: 85 KMKQANLFQIWGFKRNDAIGSVESGPSKSGCCDDGGGSSERKIVKPENRCSIFPDTGKEF 144
Query: 389 KKSMXXXXXXXXXXXXXXXXACPFYKKMPGTPFTVDAFRYGQVKDCSAYFLTHFHSDHYG 568
+ + +CPFYKKMPGT FTVDAFRYG V+ CSAYFLTHFH DHYG
Sbjct: 145 ENAKSSRKRKGSCGENRVTRSCPFYKKMPGTMFTVDAFRYGCVEGCSAYFLTHFHCDHYG 204
Query: 569 GLSKAWSHGPIYCTPITARLIEMCLYVNPSFIHTLDLDVEHVIEGIKVTLLEANHCPGAA 748
GLSK WSHGPIYC+P+T RL++MCL VNP +IH L+ + EHVI+G+KVTLLEANHCPGAA
Sbjct: 205 GLSKKWSHGPIYCSPLTGRLVQMCLSVNPLYIHPLEFNEEHVIDGVKVTLLEANHCPGAA 264
Query: 749 LIHFNLPSGQCYLHTGDFRASKLMQTYPLLLNQRVNVLYLDTTYCNPKYRFPLKEEVLNF 928
LIHFNLP+GQ YLHTGDFRA KLMQ Y LL+NQRVNVLYLDTTYCNPKYRFP KEEVLN+
Sbjct: 265 LIHFNLPNGQRYLHTGDFRACKLMQAYHLLVNQRVNVLYLDTTYCNPKYRFPSKEEVLNY 324
Query: 929 VVKVTKNILKKQPKTLIIVGAYSIGKESVYLAISKALMVKIHAESSRRRILQSFGWPEIS 1108
VVK+TKN LK P+TL++VGAYSIGKE VYLAISKAL VKI+A +SRRRILQ+FGWP++S
Sbjct: 325 VVKITKNHLKIHPRTLVVVGAYSIGKECVYLAISKALGVKIYANASRRRILQAFGWPDLS 384
Query: 1109 GSVCTNGNDTPLHVLPMSSLKFEVLEKYMKSYSGRYTSVLAFRPTGWTFSETTGSQLDLI 1288
+CTNGN+T LHVLPMSSL+ E L+ Y+K+Y ++T++LAFRPTGWTFSE + L+LI
Sbjct: 385 DKLCTNGNNTLLHVLPMSSLRVETLKDYLKTYKEQFTAILAFRPTGWTFSEKISNDLELI 444
Query: 1289 KPNSKGSVTIYGVPYSEHSSFTELREFVQFLGPEKIIPTVNMGNAATRDKMQSYFKEWSK 1468
KP SKG++TIYGVPYSEHSSF+EL++FVQ L P+KIIPTVN+GNAA R+KMQSYF++W K
Sbjct: 445 KPVSKGNITIYGVPYSEHSSFSELQDFVQVLRPDKIIPTVNVGNAANREKMQSYFRDWLK 504
Query: 1469 G 1471
G
Sbjct: 505 G 505
>ref|XP_002512800.1| DNA cross-link repair protein pso2/snm1, putative [Ricinus communis]
gi|223547811|gb|EEF49303.1| DNA cross-link repair protein
pso2/snm1, putative [Ricinus communis]
Length = 493
Score = 573 bits (1477), Expect = e-161
Identities = 277/445 (62%), Positives = 341/445 (76%), Gaps = 10/445 (2%)
Frame = +2
Query: 167 EKPEENSFAGDFYRCGTDWXXXXXXXXXXXXXXXXXXXDPEKKRLKQSNLFELWKLPS-- 340
E+ EE SFA DFYRCG+DW +K+LKQ+NL ++W L +
Sbjct: 56 EEEEEESFAADFYRCGSDWSSLLLDRGDTNNNNI-------EKKLKQANLLDVWGLKNNN 108
Query: 341 ---KTNFEASTSQVSNKKMK-----KSMXXXXXXXXXXXXXXXXACPFYKKMPGTPFTVD 496
K S+S KK+K S CPFYKK+PGTPFTVD
Sbjct: 109 PKPKALPLTSSSPSPFKKLKIGSSSSSSIKPNYKNLIPKSIKPRVCPFYKKIPGTPFTVD 168
Query: 497 AFRYGQVKDCSAYFLTHFHSDHYGGLSKAWSHGPIYCTPITARLIEMCLYVNPSFIHTLD 676
AFRYG +++CSAYFLTHFH+DHYGGL+K WSHGPIYCT +TARL+++CLYVN SFIH LD
Sbjct: 169 AFRYGPIQNCSAYFLTHFHADHYGGLTKGWSHGPIYCTQLTARLLKLCLYVNSSFIHPLD 228
Query: 677 LDVEHVIEGIKVTLLEANHCPGAALIHFNLPSGQCYLHTGDFRASKLMQTYPLLLNQRVN 856
L+ E+ IEG++VTLLEANHCPGAAL+HF L +G CYLHTGDFRASK+MQ+Y LL+NQ+VN
Sbjct: 229 LNTEYAIEGVRVTLLEANHCPGAALLHFRLSNGLCYLHTGDFRASKVMQSYHLLVNQKVN 288
Query: 857 VLYLDTTYCNPKYRFPLKEEVLNFVVKVTKNILKKQPKTLIIVGAYSIGKESVYLAISKA 1036
LYLDTTYCNPKY+FP KE+VLN+VV+VTK+ LK+QP+TLI+VGAYSIGKE VYL+ISKA
Sbjct: 289 ALYLDTTYCNPKYKFPSKEDVLNYVVRVTKDFLKQQPETLIVVGAYSIGKECVYLSISKA 348
Query: 1037 LMVKIHAESSRRRILQSFGWPEISGSVCTNGNDTPLHVLPMSSLKFEVLEKYMKSYSGRY 1216
L VKI+A +SRR+IL+SFGW ++S S+CT DTPLHVLP+SSL+ E L+ Y+K Y +Y
Sbjct: 349 LGVKIYASASRRQILESFGWSDLSRSLCTQPKDTPLHVLPISSLRVETLKDYLKKYINQY 408
Query: 1217 TSVLAFRPTGWTFSETTGSQLDLIKPNSKGSVTIYGVPYSEHSSFTELREFVQFLGPEKI 1396
+VLAFRPTGWT+SE G +LDLI+P SKG+VTIYGVPYSEHSSFTEL+EFV+FL P+KI
Sbjct: 409 RAVLAFRPTGWTYSENVGKKLDLIRPISKGNVTIYGVPYSEHSSFTELKEFVEFLKPDKI 468
Query: 1397 IPTVNMGNAATRDKMQSYFKEWSKG 1471
IPTVN+GN R+KMQS+F+EW +G
Sbjct: 469 IPTVNVGNPTNREKMQSHFREWLEG 493
>ref|XP_003624539.1| DNA cross-link repair protein SNM1 [Medicago truncatula]
gi|87241310|gb|ABD33168.1| DNA repair
metallo-beta-lactamase [Medicago truncatula]
gi|355499554|gb|AES80757.1| DNA cross-link repair protein
SNM1 [Medicago truncatula]
Length = 511
Score = 570 bits (1468), Expect = e-160
Identities = 287/489 (58%), Positives = 349/489 (71%), Gaps = 42/489 (8%)
Frame = +2
Query: 131 ISLDDNGLPCE---IEKP-----EENSFAGDFYRCGTDWXXXXXXXXXXXXXXXXXXXDP 286
I LDD G P + IE P E++SFA DFYRCG+D P
Sbjct: 38 IRLDDEGFPSQQLPIESPSPNGSEKSSFAADFYRCGSD---------------CSSLLTP 82
Query: 287 EK------KRLKQSNLFELWKLPSKTNFEASTS----------QVSNKK----------- 385
E+ K+LKQ+NLF++W FE+ VS++K
Sbjct: 83 ERDSLSSGKKLKQANLFQIWGFKRNVEFESPNQGGYCDVVGEGSVSSEKKSVKRGNWGSI 142
Query: 386 -------MKKSMXXXXXXXXXXXXXXXXACPFYKKMPGTPFTVDAFRYGQVKDCSAYFLT 544
++ S +CPFYKKMPGT FTVDAFRYG V++CSAYFL+
Sbjct: 143 LRDTGKVVENSKSTGKRKSFHGEKRVTRSCPFYKKMPGTNFTVDAFRYGCVEECSAYFLS 202
Query: 545 HFHSDHYGGLSKAWSHGPIYCTPITARLIEMCLYVNPSFIHTLDLDVEHVIEGIKVTLLE 724
HFH+DHYGGLSK WSHGPIYC+P+T RL++MCLYVNPS+I L+ D E+VI+GIKVTL++
Sbjct: 203 HFHADHYGGLSKKWSHGPIYCSPLTGRLVQMCLYVNPSYICPLEFDTEYVIDGIKVTLID 262
Query: 725 ANHCPGAALIHFNLPSGQCYLHTGDFRASKLMQTYPLLLNQRVNVLYLDTTYCNPKYRFP 904
ANHCPGAALIHF LP+GQCYLHTGDFRA KLMQ Y L +N+RVNVLYLDTTYCNPKY+FP
Sbjct: 263 ANHCPGAALIHFELPNGQCYLHTGDFRACKLMQDYHLFVNKRVNVLYLDTTYCNPKYKFP 322
Query: 905 LKEEVLNFVVKVTKNILKKQPKTLIIVGAYSIGKESVYLAISKALMVKIHAESSRRRILQ 1084
K++VLN+VVK+T N LKK P+TL++VGAYSIGKE VYLAISKAL VKIH +SRRRIL
Sbjct: 323 SKDDVLNYVVKITNNHLKKYPRTLVVVGAYSIGKECVYLAISKALGVKIHVNASRRRILL 382
Query: 1085 SFGWPEISGSVCTNGNDTPLHVLPMSSLKFEVLEKYMKSYSGRYTSVLAFRPTGWTFSET 1264
++ P+ S +CTNGN+T LHVLPMSSL+ E L++Y+K+Y ++TSVLAFRPTGWTFSE
Sbjct: 383 AYDCPDYSDRLCTNGNNTLLHVLPMSSLRIETLKEYLKTYKEQFTSVLAFRPTGWTFSEK 442
Query: 1265 TGSQLDLIKPNSKGSVTIYGVPYSEHSSFTELREFVQFLGPEKIIPTVNMGNAATRDKMQ 1444
G+ L LIKP S G++T YGVPYSEHSSFTELR+FVQFL P+KIIPTVN+GNAA R+KMQ
Sbjct: 443 IGNDLALIKPVSNGNITTYGVPYSEHSSFTELRDFVQFLRPDKIIPTVNVGNAANREKMQ 502
Query: 1445 SYFKEWSKG 1471
SYF++W KG
Sbjct: 503 SYFRDWLKG 511
>ref|NP_189302.1| DNA cross-link repair protein SNM1 [Arabidopsis thaliana]
gi|30688447|ref|NP_850635.1| DNA cross-link repair
protein SNM1 [Arabidopsis thaliana]
gi|79313637|ref|NP_001030773.1| DNA cross-link repair
protein SNM1 [Arabidopsis thaliana]
gi|73621911|sp|Q38961.1|SNM1_ARATH RecName: Full=DNA
cross-link repair protein SNM1; Short=AtSNM1
gi|1402886|emb|CAA66817.1| hypothetical protein
[Arabidopsis thaliana] gi|11994302|dbj|BAB01732.1|
unnamed protein product [Arabidopsis thaliana]
gi|26449933|dbj|BAC42087.1| unknown protein [Arabidopsis
thaliana] gi|28827378|gb|AAO50533.1| unknown protein
[Arabidopsis thaliana] gi|332643675|gb|AEE77196.1| DNA
cross-link repair protein SNM1 [Arabidopsis thaliana]
gi|332643676|gb|AEE77197.1| DNA cross-link repair protein
SNM1 [Arabidopsis thaliana] gi|332643677|gb|AEE77198.1|
DNA cross-link repair protein SNM1 [Arabidopsis thaliana]
Length = 484
Score = 546 bits (1408), Expect = e-153
Identities = 278/452 (61%), Positives = 329/452 (72%), Gaps = 20/452 (4%)
Frame = +2
Query: 167 EKPEENSFAGDFYRCGTDWXXXXXXXXXXXXXXXXXXXDPEKKRLKQSNLFELWKL---- 334
E EE FA DFY+ G+DW K++KQSNLF++W L
Sbjct: 39 ENEEEEGFASDFYKAGSDWSCLVEDEETV---------SSSVKKMKQSNLFQIWGLQENS 89
Query: 335 PSKTN-------FEA--------STSQVSNKKMKK-SMXXXXXXXXXXXXXXXXACPFYK 466
P T F++ TS SN K S CPFYK
Sbjct: 90 PDTTKKMKQTDLFQSWGLQKPSPFTSPASNSAKKTTSALGKRRRDSSFSNDSPRPCPFYK 149
Query: 467 KMPGTPFTVDAFRYGQVKDCSAYFLTHFHSDHYGGLSKAWSHGPIYCTPITARLIEMCLY 646
K+PGTPFTVDAFRYG V+ CSAYFLTHFH+DHY GL+KAWSHGPIYC+ +T+RL+ + L
Sbjct: 150 KLPGTPFTVDAFRYGCVQGCSAYFLTHFHADHYIGLTKAWSHGPIYCSSLTSRLLRLSLS 209
Query: 647 VNPSFIHTLDLDVEHVIEGIKVTLLEANHCPGAALIHFNLPSGQCYLHTGDFRASKLMQT 826
VNPS IH L+LDVE+ I GIKVTL+EANHCPGAALIHF L G CYLHTGDFRASK MQT
Sbjct: 210 VNPSSIHPLELDVEYTINGIKVTLIEANHCPGAALIHFRLLDGTCYLHTGDFRASKQMQT 269
Query: 827 YPLLLNQRVNVLYLDTTYCNPKYRFPLKEEVLNFVVKVTKNILKKQPKTLIIVGAYSIGK 1006
+PLL NQRV+VLYLDTTYCNP+Y+FP KE+VL++VV++TK+ L+KQPKTLI+VG+YSIGK
Sbjct: 270 HPLLFNQRVHVLYLDTTYCNPRYKFPSKEDVLSYVVRITKDFLRKQPKTLIVVGSYSIGK 329
Query: 1007 ESVYLAISKALMVKIHAESSRRRILQSFGWPEISGSVCTNGNDTPLHVLPMSSLKFEVLE 1186
E VYLAI+KAL VKI A +SRRRILQSFGW +IS ++ T+G T LHVLPMSSLK E L+
Sbjct: 330 ECVYLAIAKALGVKIFANASRRRILQSFGWDDISKNLSTDGKATCLHVLPMSSLKVERLD 389
Query: 1187 KYMKSYSGRYTSVLAFRPTGWTFSETTGSQLDLIKPNSKGSVTIYGVPYSEHSSFTELRE 1366
+++K Y +Y +VLAFRPTGWT+SE G LDLIKP S+G +TIYGVPYSEHSSFTELRE
Sbjct: 390 EHLKIYREQYGAVLAFRPTGWTYSEKIGEHLDLIKPTSRGKITIYGVPYSEHSSFTELRE 449
Query: 1367 FVQFLGPEKIIPTVNMGNAATRDKMQSYFKEW 1462
FVQFL P+KIIPTVN GNA TR+KMQS F+EW
Sbjct: 450 FVQFLRPDKIIPTVNNGNAGTREKMQSCFREW 481
>emb|CAA66406.1| orf12 [Arabidopsis thaliana]
Length = 484
Score = 546 bits (1408), Expect = e-153
Identities = 278/452 (61%), Positives = 329/452 (72%), Gaps = 20/452 (4%)
Frame = +2
Query: 167 EKPEENSFAGDFYRCGTDWXXXXXXXXXXXXXXXXXXXDPEKKRLKQSNLFELWKL---- 334
E EE FA DFY+ G+DW K++KQSNLF++W L
Sbjct: 39 ENEEEEGFASDFYKAGSDWSCLVEDEETV---------SSSVKKMKQSNLFQIWGLQENS 89
Query: 335 PSKTN-------FEA--------STSQVSNKKMKK-SMXXXXXXXXXXXXXXXXACPFYK 466
P T F++ TS SN K S CPFYK
Sbjct: 90 PDTTKKMKQTDLFQSWGLQKPSPFTSPASNSAKKTTSALGKRRRDSSFSNDSPRPCPFYK 149
Query: 467 KMPGTPFTVDAFRYGQVKDCSAYFLTHFHSDHYGGLSKAWSHGPIYCTPITARLIEMCLY 646
K+PGTPFTVDAFRYG V+ CSAYFLTHFH+DHY GL+KAWSHGPIYC+ +T+RL+ + L
Sbjct: 150 KLPGTPFTVDAFRYGCVQGCSAYFLTHFHADHYIGLTKAWSHGPIYCSSLTSRLLRLSLS 209
Query: 647 VNPSFIHTLDLDVEHVIEGIKVTLLEANHCPGAALIHFNLPSGQCYLHTGDFRASKLMQT 826
VNPS IH L+LDVE+ I GIKVTL+EANHCPGAALIHF L G CYLHTGDFRASK MQT
Sbjct: 210 VNPSSIHPLELDVEYTINGIKVTLIEANHCPGAALIHFRLLDGTCYLHTGDFRASKQMQT 269
Query: 827 YPLLLNQRVNVLYLDTTYCNPKYRFPLKEEVLNFVVKVTKNILKKQPKTLIIVGAYSIGK 1006
+PLL NQRV+VLYLDTTYCNP+Y+FP KE+VL++VV++TK+ L+KQPKTLI+VG+YSIGK
Sbjct: 270 HPLLFNQRVHVLYLDTTYCNPRYKFPSKEDVLSYVVRITKDFLRKQPKTLIVVGSYSIGK 329
Query: 1007 ESVYLAISKALMVKIHAESSRRRILQSFGWPEISGSVCTNGNDTPLHVLPMSSLKFEVLE 1186
E VYLAI+KAL VKI A +SRRRILQSFGW +IS ++ T+G T LHVLPMSSLK E L+
Sbjct: 330 ECVYLAIAKALGVKIFANASRRRILQSFGWDDISKNLSTDGKATCLHVLPMSSLKVERLD 389
Query: 1187 KYMKSYSGRYTSVLAFRPTGWTFSETTGSQLDLIKPNSKGSVTIYGVPYSEHSSFTELRE 1366
+++K Y +Y +VLAFRPTGWT+SE G LDLIKP S+G +TIYGVPYSEHSSFTELRE
Sbjct: 390 EHLKIYREQYGAVLAFRPTGWTYSEKIGEHLDLIKPTSRGKITIYGVPYSEHSSFTELRE 449
Query: 1367 FVQFLGPEKIIPTVNMGNAATRDKMQSYFKEW 1462
FVQFL P+KIIPTVN GNA TR+KMQS F+EW
Sbjct: 450 FVQFLRPDKIIPTVNNGNAGTREKMQSCFREW 481