BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Angelica23_contig00024706
         (1215 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB61109.1| F20P5.23 gene product [Arabidopsis thaliana]            60   1e-06
ref|XP_001784387.1| putative histone deacetylase complex, SIN3 c...    60   1e-06
ref|NP_177161.2| paired amphipathic helix domain-containing prot...    59   2e-06
gb|ELR12555.1| paired amphipathic helix protein sin3, putative [...    58   6e-06
ref|XP_003618393.1| Paired amphipathic helix protein Sin3 [Medic...    57   9e-06

>gb|AAB61109.1| F20P5.23 gene product [Arabidopsis thaliana]
          Length = 171

 Score = 60.1 bits (144), Expect = 1e-06
 Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 1/173 (0%)
 Frame = -1

Query: 1113 HLQFISSPPLIM-KTTKRQRAVEFLFLVKQRFVAQPNKFNEFAKIMSELTSNTRMKDCDL 937
            HL  +S   ++  K      A++FL LVK ++      ++ F  IM +     R K CD 
Sbjct: 3    HLPVVSFKTMVANKKLTTTDALDFLHLVKTKYQDNREIYDSFLTIMKDFRGQ-RAKTCD- 60

Query: 936  LVSKLKNLFVNDHQDLLFGLNDFLPKNMMVFEKQDDPRLCDDNNKCSWLLSDSGNEFFNK 757
            ++SK+K LF     +LL G N FLP    +    D+      N+K +    D   EF NK
Sbjct: 61   VISKVKELF-KGQPELLLGFNTFLPTGFEITLSDDE---LTSNSKFAHF--DEAYEFVNK 114

Query: 756  IRDRCIQKNDKNFSVLIKFWELILSCHEKRITVREVDLELSNLFDGDPDLYIE 598
            ++ R  Q ND    V   F E++ +  ++  +V E+  E++ LF G  DL  E
Sbjct: 115  VKTR-FQNND----VFNSFLEVLKTHKKENKSVAELYQEVAILFQGHRDLLEE 162


>ref|XP_001784387.1| putative histone deacetylase complex, SIN3 component [Physcomitrella
            patens subsp. patens] gi|162664058|gb|EDQ50792.1|
            putative histone deacetylase complex, SIN3 component
            [Physcomitrella patens subsp. patens]
          Length = 1319

 Score = 59.7 bits (143), Expect = 1e-06
 Identities = 49/190 (25%), Positives = 88/190 (46%), Gaps = 2/190 (1%)
 Frame = -1

Query: 1056 AVEFLFLVKQRFVAQPNKFNEFAKIMSELTSNTRMKDCDLLVSKLKNLFVNDHQDLLFGL 877
            A+ +L  VK++F     K++EF ++M +  +  +  D   ++S++K LF   H  L+FG 
Sbjct: 10   ALAYLKAVKEKFKDDKAKYDEFLEVMKDFKA--QKVDTAGVISRVKQLF-KGHPQLIFGF 66

Query: 876  NDFLPKNMMVFEKQDDPRLCDDNNKCSWLLSDSGNEFFNKIRDRCIQKNDKNFSVLIKFW 697
            N FLP+   + + +++    +          D    + NKI+ R       N SV  +F 
Sbjct: 67   NAFLPRGYEITQPEEEKPAVE---------FDQAINYVNKIKARFA----TNESVYKQFL 113

Query: 696  ELILSCHEKRITVREVDLELSNLFDGDPDLYIECTHLL--TNMWETSDQEPALDYSGFGS 523
            E++    +   T+ EV  E++ LF   PDL  E T+ L  TN     +  P+  +    +
Sbjct: 114  EILNYYRKGNKTINEVYQEVAKLFADHPDLLEEFTYFLPGTNGASMGNSHPSAKHVPQNA 173

Query: 522  WTKGVRWLGG 493
              +  +  GG
Sbjct: 174  RQRDEKGFGG 183


>ref|NP_177161.2| paired amphipathic helix domain-containing protein [Arabidopsis
            thaliana] gi|29824335|gb|AAP04128.1| unknown protein
            [Arabidopsis thaliana] gi|30793839|gb|AAP40372.1| unknown
            protein [Arabidopsis thaliana]
            gi|110739251|dbj|BAF01539.1| hypothetical protein
            [Arabidopsis thaliana] gi|332196889|gb|AEE35010.1| paired
            amphipathic helix domain-containing protein [Arabidopsis
            thaliana]
          Length = 160

 Score = 58.9 bits (141), Expect = 2e-06
 Identities = 49/153 (32%), Positives = 75/153 (49%)
 Frame = -1

Query: 1056 AVEFLFLVKQRFVAQPNKFNEFAKIMSELTSNTRMKDCDLLVSKLKNLFVNDHQDLLFGL 877
            A++FL LVK ++      ++ F  IM +     R K CD ++SK+K LF     +LL G 
Sbjct: 12   ALDFLHLVKTKYQDNREIYDSFLTIMKDFRGQ-RAKTCD-VISKVKELF-KGQPELLLGF 68

Query: 876  NDFLPKNMMVFEKQDDPRLCDDNNKCSWLLSDSGNEFFNKIRDRCIQKNDKNFSVLIKFW 697
            N FLP    +    D+      N+K +    D   EF NK++ R  Q ND    V   F 
Sbjct: 69   NTFLPTGFEITLSDDE---LTSNSKFAHF--DEAYEFVNKVKTR-FQNND----VFNSFL 118

Query: 696  ELILSCHEKRITVREVDLELSNLFDGDPDLYIE 598
            E++ +  ++  +V E+  E++ LF G  DL  E
Sbjct: 119  EVLKTHKKENKSVAELYQEVAILFQGHRDLLEE 151


>gb|ELR12555.1| paired amphipathic helix protein sin3, putative [Acanthamoeba
            castellanii str. Neff]
          Length = 1039

 Score = 57.8 bits (138), Expect = 6e-06
 Identities = 45/173 (26%), Positives = 81/173 (46%)
 Frame = -1

Query: 1101 ISSPPLIMKTTKRQRAVEFLFLVKQRFVAQPNKFNEFAKIMSELTSNTRMKDCDLLVSKL 922
            +SS P   +  K + A++FL  VK +F  QP  +N F  +M E  + T   D   +++++
Sbjct: 47   MSSTPT--RGVKFESALDFLDQVKLQFQHQPQIYNYFLDVMKEFKAQT--IDTPGVIARV 102

Query: 921  KNLFVNDHQDLLFGLNDFLPKNMMVFEKQDDPRLCDDNNKCSWLLSDSGNEFFNKIRDRC 742
             +LF   H DL+ G N FLP    +      P   + +        D    +  KI+ R 
Sbjct: 103  SDLF-KGHDDLILGFNTFLPPGYKIVPVAAMPPPSESDVARKQPEFDHARAYVKKIKMRF 161

Query: 741  IQKNDKNFSVLIKFWELILSCHEKRITVREVDLELSNLFDGDPDLYIECTHLL 583
            + +      +   F E++ + H ++ T+++V  +++ LF   PDL  E +  L
Sbjct: 162  LHQP----QIYKNFLEILHTFHREQHTIKDVYEQVAYLFQDHPDLLEEFSEFL 210


>ref|XP_003618393.1| Paired amphipathic helix protein Sin3 [Medicago truncatula]
            gi|355493408|gb|AES74611.1| Paired amphipathic helix
            protein Sin3 [Medicago truncatula]
          Length = 1404

 Score = 57.0 bits (136), Expect = 9e-06
 Identities = 47/177 (26%), Positives = 85/177 (48%)
 Frame = -1

Query: 1056 AVEFLFLVKQRFVAQPNKFNEFAKIMSELTSNTRMKDCDLLVSKLKNLFVNDHQDLLFGL 877
            A+ +L  VK  F  Q  K++ F ++M +  +  +  D   +++++K LF   H  L+FG 
Sbjct: 64   ALSYLKEVKNMFQDQKEKYDMFLEVMKDFKA--QKTDTTGVIARVKELF-KGHNHLIFGF 120

Query: 876  NDFLPKNMMVFEKQDDPRLCDDNNKCSWLLSDSGNEFFNKIRDRCIQKNDKNFSVLIKFW 697
            N FLPK   +   +D+    D+      +  +    F NKI+ R   +ND++  V   F 
Sbjct: 121  NTFLPKGYEITLDEDE----DEAPPKKTVEFEEAISFVNKIKKRF--QNDEH--VYKSFL 172

Query: 696  ELILSCHEKRITVREVDLELSNLFDGDPDLYIECTHLLTNMWETSDQEPALDYSGFG 526
            +++    ++  T+ EV  E++ LF    DL  E T  L +    +   P+  ++ FG
Sbjct: 173  DILNMYRKEHKTITEVYSEVATLFKSHGDLLDEFTRFLPD----NSSAPSTQHAPFG 225