BLASTX nr result

ID: Angelica23_contig00023584 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Angelica23_contig00023584
         (969 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271864.1| PREDICTED: U2 small nuclear ribonucleoprotei...   317   2e-84
gb|AAA33847.1| spliceosomal protein [Solanum tuberosum]               317   4e-84
ref|XP_002326095.1| predicted protein [Populus trichocarpa] gi|2...   310   3e-82
ref|XP_004137370.1| PREDICTED: U2 small nuclear ribonucleoprotei...   299   6e-79
ref|XP_002517742.1| small nuclear ribonucleoprotein U)1a,U)2b, p...   295   8e-78

>ref|XP_002271864.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' [Vitis vinifera]
           gi|297745807|emb|CBI15863.3| unnamed protein product
           [Vitis vinifera]
          Length = 234

 Score =  317 bits (813), Expect = 2e-84
 Identities = 167/234 (71%), Positives = 178/234 (76%), Gaps = 4/234 (1%)
 Frame = +3

Query: 84  MLTGDIPPNQTIYIXXXXXXXXXXXXXRSLYALFSQYGRILDIVALKTPKLRGQAWLVFS 263
           ML+GDIPPNQ+IYI             RSLY LFSQYGRILD+VALKTPKLRGQAW+VFS
Sbjct: 1   MLSGDIPPNQSIYIKNLNEKVKKEELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 264 EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVP---KDVXXXXXXXXXXX 434
           EVTAASNAVRQMQNFPFYDKPMR+QYAKTKSDCVAKADG+FVP   K             
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRVQYAKTKSDCVAKADGTFVPREKKKKQEEKAEKKRRA 120

Query: 435 XXXSQPAGTNGVRAETNGGPMGS-RQGRPSAQEAAAPPNNILFIQNLPHETTDDMLQVLF 611
               Q    NG  AETNGGP    RQG   A+E  A PNNILFIQNLPH+TT  MLQVLF
Sbjct: 121 EEAQQSGNANGRNAETNGGPTPPFRQGNQGAREPEAAPNNILFIQNLPHQTTSMMLQVLF 180

Query: 612 KQYPGFREVRMIAAKPGIAFVEFEDDNQSLVAMEALQGFKITPQNPMGISYAKK 773
           +QYPGFREVRMI AKPGIAFVEFEDD QS +AMEALQGFKITPQNPM I+YAKK
Sbjct: 181 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMEALQGFKITPQNPMAIAYAKK 234


>gb|AAA33847.1| spliceosomal protein [Solanum tuberosum]
          Length = 231

 Score =  317 bits (811), Expect = 4e-84
 Identities = 164/231 (70%), Positives = 180/231 (77%), Gaps = 1/231 (0%)
 Frame = +3

Query: 84  MLTGDIPPNQTIYIXXXXXXXXXXXXXRSLYALFSQYGRILDIVALKTPKLRGQAWLVFS 263
           MLTGDIPPNQTIYI             RSLY LFSQYGRI+DIVALKTPKLRGQ+W+VFS
Sbjct: 2   MLTGDIPPNQTIYIKNLNEKVKKEELKRSLYCLFSQYGRIVDIVALKTPKLRGQSWVVFS 61

Query: 264 EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPKDVXXXXXXXXXXXXXX 443
           EVTAASNAVRQMQNFPFYDKPMRIQYAK+KSDC+AKA+G++  K                
Sbjct: 62  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCIAKAEGTYDKKKKQDEKVEKRKRTEET 121

Query: 444 SQPAGTNGVRAETNGGP-MGSRQGRPSAQEAAAPPNNILFIQNLPHETTDDMLQVLFKQY 620
            Q    NG R ++NGGP   SRQG+PSAQ+  A PNNILFIQNLPHETT  ML+VLFKQY
Sbjct: 122 PQTGAANGPRTDSNGGPAAASRQGKPSAQD-VAEPNNILFIQNLPHETTSMMLEVLFKQY 180

Query: 621 PGFREVRMIAAKPGIAFVEFEDDNQSLVAMEALQGFKITPQNPMGISYAKK 773
           PGFREVRMI AKPGIAFVEF+DD QS VAM+ALQGFKITPQNPM I+YAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFDDDVQSSVAMQALQGFKITPQNPMAITYAKK 231


>ref|XP_002326095.1| predicted protein [Populus trichocarpa] gi|222862970|gb|EEF00477.1|
           predicted protein [Populus trichocarpa]
          Length = 233

 Score =  310 bits (794), Expect = 3e-82
 Identities = 164/234 (70%), Positives = 176/234 (75%), Gaps = 4/234 (1%)
 Frame = +3

Query: 84  MLTGDIPPNQTIYIXXXXXXXXXXXXXRSLYALFSQYGRILDIVALKTPKLRGQAWLVFS 263
           MLTGDIPPNQTIYI             RSLY LFSQYGRILD+VALKT +LRGQAW+VFS
Sbjct: 1   MLTGDIPPNQTIYIKNLNEKVKKEELKRSLYCLFSQYGRILDVVALKTARLRGQAWVVFS 60

Query: 264 EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVP----KDVXXXXXXXXXX 431
           EVTAASNAVRQMQ FPFYDKPMRIQYAKTKSDC+A+A+G + P    K            
Sbjct: 61  EVTAASNAVRQMQGFPFYDKPMRIQYAKTKSDCIAEAEGVYDPNAKKKKKQEEKAERKKR 120

Query: 432 XXXXSQPAGTNGVRAETNGGPMGSRQGRPSAQEAAAPPNNILFIQNLPHETTDDMLQVLF 611
                Q A  NG  AE+NGGP   RQG  SAQE   PPNNILFIQNLPHETT  MLQVLF
Sbjct: 121 AEEAQQSAPANGKPAESNGGPTSFRQGNQSAQE-TVPPNNILFIQNLPHETTSMMLQVLF 179

Query: 612 KQYPGFREVRMIAAKPGIAFVEFEDDNQSLVAMEALQGFKITPQNPMGISYAKK 773
           +QYPGFREVRMI AKPGIAFVEFEDD QS +AM+ALQGFKITPQNPM I+YAKK
Sbjct: 180 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITYAKK 233


>ref|XP_004137370.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis
           sativus] gi|449520549|ref|XP_004167296.1| PREDICTED: U2
           small nuclear ribonucleoprotein B'' 2-like [Cucumis
           sativus]
          Length = 231

 Score =  299 bits (766), Expect = 6e-79
 Identities = 158/233 (67%), Positives = 173/233 (74%), Gaps = 3/233 (1%)
 Frame = +3

Query: 84  MLTGDIPPNQTIYIXXXXXXXXXXXXXRSLYALFSQYGRILDIVALKTPKLRGQAWLVFS 263
           ML+GDIPPNQTIYI             RSLYALFSQYGRILD+VALKTP+LRGQAW+ FS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 264 EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPKDVXXXXXXXXXXXXXX 443
           EVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDC+AKADGSFVP++               
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120

Query: 444 S---QPAGTNGVRAETNGGPMGSRQGRPSAQEAAAPPNNILFIQNLPHETTDDMLQVLFK 614
               Q A  NG   E  G     R   PSA EA   PNNILFI+NLPHET+  MLQVLF+
Sbjct: 121 EETHQSAMPNGTTTENGGSNATFRHANPSATEAT--PNNILFIENLPHETSSMMLQVLFQ 178

Query: 615 QYPGFREVRMIAAKPGIAFVEFEDDNQSLVAMEALQGFKITPQNPMGISYAKK 773
           QYPGFREVRMI AKPGIAFVEFEDD QS +AM+ALQGFKI PQ+PM IS+AKK
Sbjct: 179 QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231


>ref|XP_002517742.1| small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus
           communis] gi|223543140|gb|EEF44674.1| small nuclear
           ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
          Length = 233

 Score =  295 bits (756), Expect = 8e-78
 Identities = 158/234 (67%), Positives = 169/234 (72%), Gaps = 4/234 (1%)
 Frame = +3

Query: 84  MLTGDIPPNQTIYIXXXXXXXXXXXXXRSLYALFSQYGRILDIVALKTPKLRGQAWLVFS 263
           MLTGDIPPNQTIYI             RSLY LFSQYGRILD+VALKTPKLRGQAW+ FS
Sbjct: 1   MLTGDIPPNQTIYIKNLNEKVKKEELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVCFS 60

Query: 264 EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVP----KDVXXXXXXXXXX 431
           EV AASNAVRQMQ FPFYDKPMRIQYAKTKSDC+ +A+G++ P    K            
Sbjct: 61  EVMAASNAVRQMQGFPFYDKPMRIQYAKTKSDCLVEAEGNYDPNAKKKKKQEEKAERKRR 120

Query: 432 XXXXSQPAGTNGVRAETNGGPMGSRQGRPSAQEAAAPPNNILFIQNLPHETTDDMLQVLF 611
                Q A  NG     N G    RQG    QE AAPPNNILFIQNLPHETT  MLQVLF
Sbjct: 121 AEEAQQSATANGTSTVNNRGTAPFRQGNRGEQE-AAPPNNILFIQNLPHETTSMMLQVLF 179

Query: 612 KQYPGFREVRMIAAKPGIAFVEFEDDNQSLVAMEALQGFKITPQNPMGISYAKK 773
           +QYPGFREVRMI AKPGIAFVEFEDD QS +AM+ALQ FKITPQNPM I+YAKK
Sbjct: 180 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQSFKITPQNPMAITYAKK 233


Top