BLASTX nr result
ID: Angelica23_contig00023297
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Angelica23_contig00023297
(319 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002282466.1| PREDICTED: pentatricopeptide repeat-containi... 129 2e-32
emb|CAN64903.1| hypothetical protein VITISV_019802 [Vitis vinifera] 129 3e-32
ref|XP_002314516.1| predicted protein [Populus trichocarpa] gi|2... 127 7e-28
ref|XP_003535458.1| PREDICTED: pentatricopeptide repeat-containi... 108 4e-26
ref|XP_002518208.1| pentatricopeptide repeat-containing protein,... 112 5e-25
>ref|XP_002282466.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Vitis vinifera]
Length = 625
Score = 129 bits (325), Expect(2) = 2e-32
Identities = 63/97 (64%), Positives = 79/97 (81%)
Frame = +1
Query: 25 CIVM**RMMVGFFLESDFHLGCCLIDMYGKSGRVNVGRKVFDCMKVRNVFAWTAMISGYV 204
C ++ +++G L+SD HLGCCLIDMY +S +V VGR+VFD MK RNVF+WTAMI+GYV
Sbjct: 253 CYIVKNELVLG--LDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYV 310
Query: 205 QNGEFDEALFLFGEMQSRGGIEPNKVSLISVLPACSS 315
+NG+ DEAL LF +MQ GIEPN+VSL+SVLPACSS
Sbjct: 311 ENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSS 347
Score = 34.3 bits (77), Expect(2) = 2e-32
Identities = 12/14 (85%), Positives = 14/14 (100%)
Frame = +3
Query: 9 DYGRELHCYVVKND 50
DYGRELHCY+VKN+
Sbjct: 246 DYGRELHCYIVKNE 259
Score = 58.9 bits (141), Expect = 4e-07
Identities = 31/84 (36%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Frame = +1
Query: 64 LESDFHLGCCLIDMYGKSGRVNVGRKVF-DCMKVRNVFAWTAMISGYVQNGEFDEALFLF 240
L ++ L LIDMY K G ++ R+VF D ++ +W++MISGY +G+ EA+ L+
Sbjct: 366 LNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLY 425
Query: 241 GEMQSRGGIEPNKVSLISVLPACS 312
+M + GI P+ ++ + +L ACS
Sbjct: 426 DKM-LQAGIRPDMITTVGILSACS 448
>emb|CAN64903.1| hypothetical protein VITISV_019802 [Vitis vinifera]
Length = 625
Score = 129 bits (324), Expect(2) = 3e-32
Identities = 62/97 (63%), Positives = 79/97 (81%)
Frame = +1
Query: 25 CIVM**RMMVGFFLESDFHLGCCLIDMYGKSGRVNVGRKVFDCMKVRNVFAWTAMISGYV 204
C ++ +++G L+SD HLGCCLIDMY +S +V VGR+VFD MK RNVF+WTAMI+GYV
Sbjct: 253 CYIVKNELVLG--LDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYV 310
Query: 205 QNGEFDEALFLFGEMQSRGGIEPNKVSLISVLPACSS 315
+NG+ DEAL LF +MQ G+EPN+VSL+SVLPACSS
Sbjct: 311 ENGDSDEALSLFRDMQVIDGVEPNRVSLVSVLPACSS 347
Score = 34.3 bits (77), Expect(2) = 3e-32
Identities = 12/14 (85%), Positives = 14/14 (100%)
Frame = +3
Query: 9 DYGRELHCYVVKND 50
DYGRELHCY+VKN+
Sbjct: 246 DYGRELHCYIVKNE 259
Score = 57.4 bits (137), Expect = 1e-06
Identities = 30/83 (36%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = +1
Query: 64 LESDFHLGCCLIDMYGKSGRVNVGRKVF-DCMKVRNVFAWTAMISGYVQNGEFDEALFLF 240
L ++ L LIDMY K G ++ R+VF D ++ +W++MISGY +G+ EA+ L+
Sbjct: 366 LNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLY 425
Query: 241 GEMQSRGGIEPNKVSLISVLPAC 309
+M + GI P+ ++ + +L AC
Sbjct: 426 DKM-LQAGIRPDMITTVGILSAC 447
>ref|XP_002314516.1| predicted protein [Populus trichocarpa] gi|222863556|gb|EEF00687.1|
predicted protein [Populus trichocarpa]
Length = 632
Score = 127 bits (318), Expect(2) = 7e-28
Identities = 58/83 (69%), Positives = 71/83 (85%)
Frame = +1
Query: 70 SDFHLGCCLIDMYGKSGRVNVGRKVFDCMKVRNVFAWTAMISGYVQNGEFDEALFLFGEM 249
++ HLGCCLIDMY +S RV+VGR+VFD M+ RNV+AWTAMI+G+VQNG +E L LF EM
Sbjct: 270 TEVHLGCCLIDMYSRSNRVDVGRRVFDRMECRNVYAWTAMINGHVQNGALEEGLVLFHEM 329
Query: 250 QSRGGIEPNKVSLISVLPACSSV 318
Q R G+EPNKVSL+SVLPACS+V
Sbjct: 330 QVRDGVEPNKVSLVSVLPACSAV 352
Score = 21.9 bits (45), Expect(2) = 7e-28
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = +3
Query: 9 DYGRELHCYVVK 44
D+GRELH ++V+
Sbjct: 250 DHGRELHGFIVR 261
Score = 57.4 bits (137), Expect = 1e-06
Identities = 30/82 (36%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Frame = +1
Query: 70 SDFHLGCCLIDMYGKSGRVNVGRKVFDCMKVR-NVFAWTAMISGYVQNGEFDEALFLFGE 246
+D L LIDMY K G ++ ++VF+ R + +W++MISGY +G+ +EA+F++ +
Sbjct: 372 NDVSLCNALIDMYSKCGSLDHAKQVFEFGSFRRDPISWSSMISGYGLHGKGEEAVFVYNK 431
Query: 247 MQSRGGIEPNKVSLISVLPACS 312
M G +P+ ++++ VL ACS
Sbjct: 432 MLQLGN-KPDMITIVGVLSACS 452
>ref|XP_003535458.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 630
Score = 108 bits (271), Expect(2) = 4e-26
Identities = 53/82 (64%), Positives = 63/82 (76%)
Frame = +1
Query: 64 LESDFHLGCCLIDMYGKSGRVNVGRKVFDCMKVRNVFAWTAMISGYVQNGEFDEALFLFG 243
++SD HLG LIDMY +S +V +GR+VFD MK RNV+ WTAMI+GYVQNG D+AL L
Sbjct: 271 MDSDVHLGSSLIDMYSRSKKVVLGRRVFDQMKNRNVYVWTAMINGYVQNGAPDDALVLLR 330
Query: 244 EMQSRGGIEPNKVSLISVLPAC 309
MQ + GI PNKVSLIS LPAC
Sbjct: 331 AMQMKDGIRPNKVSLISALPAC 352
Score = 33.9 bits (76), Expect(2) = 4e-26
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 9 DYGRELHCYVVKN 47
DYGRELHCYVVKN
Sbjct: 253 DYGRELHCYVVKN 265
>ref|XP_002518208.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223542804|gb|EEF44341.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 506
Score = 112 bits (280), Expect(2) = 5e-25
Identities = 53/85 (62%), Positives = 66/85 (77%)
Frame = +1
Query: 64 LESDFHLGCCLIDMYGKSGRVNVGRKVFDCMKVRNVFAWTAMISGYVQNGEFDEALFLFG 243
L SD HLG CLIDMY + RV ++FD MK RNV+ WTAMI+GYVQNG +EAL LF
Sbjct: 269 LGSDVHLGSCLIDMYSRINRVEKCMQLFDQMKRRNVYVWTAMINGYVQNGALEEALTLFH 328
Query: 244 EMQSRGGIEPNKVSLISVLPACSSV 318
EMQ++ G+EPN+V+L+SVLP CSS+
Sbjct: 329 EMQAKDGVEPNRVTLVSVLPICSSL 353
Score = 26.9 bits (58), Expect(2) = 5e-25
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +3
Query: 9 DYGRELHCYVVKND 50
DYGRELH ++V+N+
Sbjct: 250 DYGRELHGFIVRNE 263
Score = 62.0 bits (149), Expect = 5e-08
Identities = 33/83 (39%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Frame = +1
Query: 64 LESDFHLGCCLIDMYGKSGRVNVGRKVFDCMKVR-NVFAWTAMISGYVQNGEFDEALFLF 240
L D L LIDMY K G +N R+VFD R + +W+++ISGY +G+ +EA+FL+
Sbjct: 371 LNFDASLSNALIDMYSKCGSLNYARRVFDNGTFRRDAISWSSIISGYGLHGKGEEAVFLY 430
Query: 241 GEMQSRGGIEPNKVSLISVLPAC 309
+M G +P+++++I V+ AC
Sbjct: 431 DKMLQLGN-KPDQITVIGVISAC 452