BLASTX nr result
ID: Angelica23_contig00022969
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Angelica23_contig00022969
(614 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002514062.1| replication factor A 1, rfa1, putative [Rici... 81 8e-26
ref|XP_002278273.1| PREDICTED: replication protein A 70 kDa DNA-... 77 5e-24
ref|XP_002883738.1| hypothetical protein ARALYDRAFT_899421 [Arab... 79 2e-23
ref|NP_178690.1| replication factor A1 [Arabidopsis thaliana] gi... 79 2e-23
ref|NP_973433.1| replication factor A1 [Arabidopsis thaliana] gi... 79 2e-23
>ref|XP_002514062.1| replication factor A 1, rfa1, putative [Ricinus communis]
gi|223546518|gb|EEF48016.1| replication factor A 1,
rfa1, putative [Ricinus communis]
Length = 670
Score = 81.3 bits (199), Expect(3) = 8e-26
Identities = 40/64 (62%), Positives = 46/64 (71%)
Frame = -1
Query: 296 RGGKDLA*PSISRDCLPGV*KNEILKPLSWIMYEDLDRSDKPDWITVKAHITFIKTYNLC 117
RGG+ A SISRD LPG KNEI K +S I +E L RSD+PDW+TV A ITF+KT C
Sbjct: 466 RGGQHTASVSISRDILPGGSKNEIRKTVSQIKHEGLGRSDRPDWVTVSARITFVKTDTFC 525
Query: 116 YTAC 105
YTAC
Sbjct: 526 YTAC 529
Score = 51.6 bits (122), Expect(3) = 8e-26
Identities = 27/37 (72%), Positives = 28/37 (75%), Gaps = 3/37 (8%)
Frame = -2
Query: 103 YTAY-MMIRSIQCNKKVTSG--SRWQGDRCNQEFDEC 2
YTA +MI QCNKKVTS SRWQ DRCNQEFDEC
Sbjct: 526 YTACPLMIGDRQCNKKVTSSGNSRWQCDRCNQEFDEC 562
Score = 30.0 bits (66), Expect(3) = 8e-26
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = -3
Query: 381 KSIENISSSQLFIK*DSQEIINLRLWFD 298
KS+ ISS+QLFI D E L+ WFD
Sbjct: 438 KSLGTISSTQLFINPDIPEAHGLKDWFD 465
>ref|XP_002278273.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit [Vitis
vinifera] gi|297738589|emb|CBI27834.3| unnamed protein
product [Vitis vinifera]
Length = 622
Score = 77.0 bits (188), Expect(3) = 5e-24
Identities = 39/64 (60%), Positives = 45/64 (70%)
Frame = -1
Query: 296 RGGKDLA*PSISRDCLPGV*KNEILKPLSWIMYEDLDRSDKPDWITVKAHITFIKTYNLC 117
RGGK+ A SISRD +P +NEI K +S I E L RSDKPDW+TVKA I+FIKT C
Sbjct: 420 RGGKNAASQSISRDIMPAGSRNEIRKTVSQIKDEGLGRSDKPDWVTVKATISFIKTDTFC 479
Query: 116 YTAC 105
Y AC
Sbjct: 480 YAAC 483
Score = 45.4 bits (106), Expect(3) = 5e-24
Identities = 20/32 (62%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Frame = -2
Query: 91 MMIRSIQCNKKVT--SGSRWQGDRCNQEFDEC 2
+MI QCNKKVT +RWQ DRCNQEF++C
Sbjct: 485 LMIGDRQCNKKVTRSGNTRWQCDRCNQEFEDC 516
Score = 34.3 bits (77), Expect(3) = 5e-24
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = -3
Query: 381 KSIENISSSQLFIK*DSQEIINLRLWFDSRWKRS 280
KS+ IS++QLFI D E NLR WFD K +
Sbjct: 392 KSVGTISATQLFINPDFTEACNLREWFDRGGKNA 425
>ref|XP_002883738.1| hypothetical protein ARALYDRAFT_899421 [Arabidopsis lyrata subsp.
lyrata] gi|297329578|gb|EFH59997.1| hypothetical protein
ARALYDRAFT_899421 [Arabidopsis lyrata subsp. lyrata]
Length = 640
Score = 79.3 bits (194), Expect(3) = 2e-23
Identities = 43/64 (67%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Frame = -1
Query: 293 GGKDLA*PSISRDCLPG-V*KNEILKPLSWIMYEDLDRSDKPDWITVKAHITFIKTYNLC 117
GGKD A SISRD +PG V +NEI K +S I E L RSDKPDWITVKA I+FIKT + C
Sbjct: 440 GGKDTASFSISRDTMPGGVSRNEIRKSVSQIKEEGLGRSDKPDWITVKATISFIKTDSFC 499
Query: 116 YTAC 105
YTAC
Sbjct: 500 YTAC 503
Score = 42.7 bits (99), Expect(3) = 2e-23
Identities = 23/37 (62%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Frame = -2
Query: 103 YTAY-MMIRSIQCNKKVTSG--SRWQGDRCNQEFDEC 2
YTA +MI QCNKKVT +RW DRCNQE DEC
Sbjct: 500 YTACPLMIGDKQCNKKVTRSGTNRWLCDRCNQESDEC 536
Score = 32.7 bits (73), Expect(3) = 2e-23
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = -3
Query: 381 KSIENISSSQLFIK*DSQEIINLRLWFD 298
KS+ ISS+QLFI D E LR WFD
Sbjct: 411 KSVGTISSTQLFINPDFPEAHKLRTWFD 438
>ref|NP_178690.1| replication factor A1 [Arabidopsis thaliana]
gi|4584356|gb|AAD25150.1| putative replication protein
A1 [Arabidopsis thaliana] gi|26452416|dbj|BAC43293.1|
putative replication protein A1 [Arabidopsis thaliana]
gi|29029004|gb|AAO64881.1| At2g06510 [Arabidopsis
thaliana] gi|330250916|gb|AEC06010.1| replication factor
A1 [Arabidopsis thaliana]
Length = 640
Score = 79.0 bits (193), Expect(3) = 2e-23
Identities = 43/64 (67%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Frame = -1
Query: 293 GGKDLA*PSISRDCLPG-V*KNEILKPLSWIMYEDLDRSDKPDWITVKAHITFIKTYNLC 117
GGKD A SISRD +PG V +NEI K +S I E L RSDKPDWITVKA I+FIKT + C
Sbjct: 440 GGKDTASFSISRDTMPGGVSRNEIRKNVSQIKEEGLGRSDKPDWITVKATISFIKTDSFC 499
Query: 116 YTAC 105
YTAC
Sbjct: 500 YTAC 503
Score = 42.7 bits (99), Expect(3) = 2e-23
Identities = 23/37 (62%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Frame = -2
Query: 103 YTAY-MMIRSIQCNKKVTSG--SRWQGDRCNQEFDEC 2
YTA +MI QCNKKVT +RW DRCNQE DEC
Sbjct: 500 YTACPLMIGDKQCNKKVTRSGTNRWLCDRCNQESDEC 536
Score = 32.7 bits (73), Expect(3) = 2e-23
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = -3
Query: 381 KSIENISSSQLFIK*DSQEIINLRLWFD 298
KS+ ISS+QLFI D E LR WFD
Sbjct: 411 KSVGTISSTQLFINPDFPEAHKLRTWFD 438
>ref|NP_973433.1| replication factor A1 [Arabidopsis thaliana]
gi|330250915|gb|AEC06009.1| replication factor A1
[Arabidopsis thaliana]
Length = 617
Score = 79.0 bits (193), Expect(3) = 2e-23
Identities = 43/64 (67%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Frame = -1
Query: 293 GGKDLA*PSISRDCLPG-V*KNEILKPLSWIMYEDLDRSDKPDWITVKAHITFIKTYNLC 117
GGKD A SISRD +PG V +NEI K +S I E L RSDKPDWITVKA I+FIKT + C
Sbjct: 417 GGKDTASFSISRDTMPGGVSRNEIRKNVSQIKEEGLGRSDKPDWITVKATISFIKTDSFC 476
Query: 116 YTAC 105
YTAC
Sbjct: 477 YTAC 480
Score = 42.7 bits (99), Expect(3) = 2e-23
Identities = 23/37 (62%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Frame = -2
Query: 103 YTAY-MMIRSIQCNKKVTSG--SRWQGDRCNQEFDEC 2
YTA +MI QCNKKVT +RW DRCNQE DEC
Sbjct: 477 YTACPLMIGDKQCNKKVTRSGTNRWLCDRCNQESDEC 513
Score = 32.7 bits (73), Expect(3) = 2e-23
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = -3
Query: 381 KSIENISSSQLFIK*DSQEIINLRLWFD 298
KS+ ISS+QLFI D E LR WFD
Sbjct: 388 KSVGTISSTQLFINPDFPEAHKLRTWFD 415