BLASTX nr result

ID: Angelica23_contig00019288 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Angelica23_contig00019288
         (266 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|1M18|A Chain A, Ligand Binding Alters The Structure And Dyna...    69   5e-10
gb|ACS12996.1| histone H3 [Dolania americana]                          69   5e-10
sp|P02302.2|H3C_XENLA RecName: Full=Histone H3.3C                      69   5e-10
gb|EHB12465.1| Histone H3.3 [Heterocephalus glaber]                    68   7e-10
gb|EHB11103.1| Histone H3.3 [Heterocephalus glaber]                    68   9e-10

>pdb|1M18|A Chain A, Ligand Binding Alters The Structure And Dynamics Of
           Nucleosomal Dna gi|28948514|pdb|1M18|E Chain E, Ligand
           Binding Alters The Structure And Dynamics Of Nucleosomal
           Dna gi|28948520|pdb|1M19|A Chain A, Ligand Binding
           Alters The Structure And Dynamics Of Nucleosomal Dna
           gi|28948524|pdb|1M19|E Chain E, Ligand Binding Alters
           The Structure And Dynamics Of Nucleosomal Dna
           gi|28948530|pdb|1M1A|A Chain A, Ligand Binding Alters
           The Structure And Dynamics Of Nucleosomal Dna
           gi|28948534|pdb|1M1A|E Chain E, Ligand Binding Alters
           The Structure And Dynamics Of Nucleosomal Dna
          Length = 135

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 35/52 (67%), Positives = 38/52 (73%)
 Frame = -3

Query: 162 AQTKLTTRKSTRGKVPKKQLEIKAAPMCAPTTGGFRKLDRYRP*IVALREIR 7
           A+TK T RKST GK P+KQL  KAA  CAP TGG +K  RYRP  VALREIR
Sbjct: 1   ARTKQTARKSTGGKAPRKQLVTKAAKKCAPATGGVKKPHRYRPGTVALREIR 52


>gb|ACS12996.1| histone H3 [Dolania americana]
          Length = 123

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 35/52 (67%), Positives = 38/52 (73%)
 Frame = -3

Query: 162 AQTKLTTRKSTRGKVPKKQLEIKAAPMCAPTTGGFRKLDRYRP*IVALREIR 7
           A+TK T RKST GK P+KQL  KAA  CAP TGG +K  RYRP  VALREIR
Sbjct: 1   ARTKQTARKSTGGKAPRKQLATKAARKCAPATGGVKKPHRYRPGTVALREIR 52


>sp|P02302.2|H3C_XENLA RecName: Full=Histone H3.3C
          Length = 136

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 35/52 (67%), Positives = 38/52 (73%)
 Frame = -3

Query: 162 AQTKLTTRKSTRGKVPKKQLEIKAAPMCAPTTGGFRKLDRYRP*IVALREIR 7
           A+TK T RKST GK P+KQL  KAA  CAP TGG +K  RYRP  VALREIR
Sbjct: 2   ARTKQTARKSTGGKAPRKQLVTKAAKKCAPATGGVKKPHRYRPGTVALREIR 53


>gb|EHB12465.1| Histone H3.3 [Heterocephalus glaber]
          Length = 93

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 35/52 (67%), Positives = 38/52 (73%)
 Frame = -3

Query: 162 AQTKLTTRKSTRGKVPKKQLEIKAAPMCAPTTGGFRKLDRYRP*IVALREIR 7
           A TK T RKST GK P+KQL  KAAP  AP+TGG +K  RYRP  VALREIR
Sbjct: 2   AHTKQTARKSTGGKAPRKQLATKAAPKSAPSTGGVKKPHRYRPGTVALREIR 53


>gb|EHB11103.1| Histone H3.3 [Heterocephalus glaber]
          Length = 136

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 35/52 (67%), Positives = 39/52 (75%)
 Frame = -3

Query: 162 AQTKLTTRKSTRGKVPKKQLEIKAAPMCAPTTGGFRKLDRYRP*IVALREIR 7
           A+TK T RKST GK P+KQL  KAA   AP+TGG +K DRYRP  VALREIR
Sbjct: 2   ARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPDRYRPGTVALREIR 53


Top