BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Angelica23_contig00017349
         (849 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002510905.1| cleavage and polyadenylation specificity fac...   325   6e-87
emb|CBI24510.3| unnamed protein product [Vitis vinifera]              325   1e-86
ref|XP_002268371.1| PREDICTED: cleavage and polyadenylation spec...   325   1e-86
ref|NP_199979.2| cleavage and polyadenylation specificity factor...   320   3e-85
dbj|BAB11613.1| cleavage and polyadenylation specificity factor ...   320   3e-85

>ref|XP_002510905.1| cleavage and polyadenylation specificity factor cpsf, putative
           [Ricinus communis] gi|223550020|gb|EEF51507.1| cleavage
           and polyadenylation specificity factor cpsf, putative
           [Ricinus communis]
          Length = 1461

 Score =  325 bits (834), Expect = 6e-87
 Identities = 168/260 (64%), Positives = 199/260 (76%), Gaps = 11/260 (4%)
 Frame = +2

Query: 101 MSYAAFKMMHSPTAIETCASGYITHCN-----HLPAIQTQD-SSDWLSIKPNVITSIPNL 262
           MSYAA+KM+H PT IE+CASGYITH        +P IQT +  S+W   K   I  +PNL
Sbjct: 1   MSYAAYKMLHWPTGIESCASGYITHSRADFVPQIPPIQTDNLDSEWPPSKRG-IGPMPNL 59

Query: 263 VVTAANVLQVYVVRVSDDSVK---GSSEAKRGGVMDGVSGASLELVCHYRLHGNIYSMAI 433
           +VTA +VL+VYVVRV +D  +    S E KRGG+MDGVSGASLELVCHYRLHGN+ SM +
Sbjct: 60  IVTAGSVLEVYVVRVQEDGSRESRSSRETKRGGLMDGVSGASLELVCHYRLHGNVESMVV 119

Query: 434 LPCXXXXXXXXX-SIILTFDDAKISVLEFDDSVHGLHTSSMHCFEGPEWLHLKRGRETFP 610
           LP           SIIL F DAKISVLEFDDS+HGL TSSMHCFEGPEWLHLKRGRE+F 
Sbjct: 120 LPTEGGDSSRRRDSIILAFKDAKISVLEFDDSIHGLRTSSMHCFEGPEWLHLKRGRESFA 179

Query: 611 TGPLVKVDPQGRCAGVLVYGLQMIILKAAQA-GGFVGDDSTLGTGGACCARVESSYIISL 787
            GPL+KVDPQGRC G+LVY +QMIIL+AAQA  G VGDD  L +GG+  ARV+SSY+I+L
Sbjct: 180 RGPLLKVDPQGRCGGILVYDMQMIILRAAQASSGLVGDDDALSSGGSISARVQSSYVINL 239

Query: 788 RDLEMKHVKDFVFINGYIEP 847
           RD++MKHVKDF+F++ YIEP
Sbjct: 240 RDMDMKHVKDFIFLHDYIEP 259


>emb|CBI24510.3| unnamed protein product [Vitis vinifera]
          Length = 1448

 Score =  325 bits (832), Expect = 1e-86
 Identities = 168/260 (64%), Positives = 198/260 (76%), Gaps = 11/260 (4%)
 Frame = +2

Query: 101 MSYAAFKMMHSPTAIETCASGYITHCN-----HLPAIQTQD-SSDWLSIKPNVITSIPNL 262
           MSYAA+KMMH PT IE CASG++TH        +  IQT D  S+W + +   I  +PNL
Sbjct: 1   MSYAAYKMMHWPTGIENCASGFVTHSRADFAPQIAPIQTDDLESEWPTKRQ--IGPLPNL 58

Query: 263 VVTAANVLQVYVVRVSDDSVK---GSSEAKRGGVMDGVSGASLELVCHYRLHGNIYSMAI 433
           +VTAAN+L+VY+VRV +D  +    S+E KRGGVM G+SGA+LELVC YRLHGN+ +M +
Sbjct: 59  IVTAANILEVYMVRVQEDDSRESRASAETKRGGVMAGISGAALELVCQYRLHGNVETMTV 118

Query: 434 LPCXXXXXXXXX-SIILTFDDAKISVLEFDDSVHGLHTSSMHCFEGPEWLHLKRGRETFP 610
           LP           SIIL F DAKISVLEFDDS+HGL TSSMHCFEGPEW HLKRG E+F 
Sbjct: 119 LPSGGGDNSRRRDSIILAFQDAKISVLEFDDSIHGLRTSSMHCFEGPEWFHLKRGHESFA 178

Query: 611 TGPLVKVDPQGRCAGVLVYGLQMIILKAAQAG-GFVGDDSTLGTGGACCARVESSYIISL 787
            GPLVKVDPQGRC+GVLVYGLQMIILKA+QAG G VGD+  L +G A  ARVESSY+ISL
Sbjct: 179 RGPLVKVDPQGRCSGVLVYGLQMIILKASQAGYGLVGDEEALSSGSAVSARVESSYVISL 238

Query: 788 RDLEMKHVKDFVFINGYIEP 847
           RDL+MKHVKDF F++GYIEP
Sbjct: 239 RDLDMKHVKDFTFVHGYIEP 258


>ref|XP_002268371.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
           1-like [Vitis vinifera]
          Length = 1442

 Score =  325 bits (832), Expect = 1e-86
 Identities = 168/260 (64%), Positives = 198/260 (76%), Gaps = 11/260 (4%)
 Frame = +2

Query: 101 MSYAAFKMMHSPTAIETCASGYITHCN-----HLPAIQTQD-SSDWLSIKPNVITSIPNL 262
           MSYAA+KMMH PT IE CASG++TH        +  IQT D  S+W + +   I  +PNL
Sbjct: 1   MSYAAYKMMHWPTGIENCASGFVTHSRADFAPQIAPIQTDDLESEWPTKRQ--IGPLPNL 58

Query: 263 VVTAANVLQVYVVRVSDDSVK---GSSEAKRGGVMDGVSGASLELVCHYRLHGNIYSMAI 433
           +VTAAN+L+VY+VRV +D  +    S+E KRGGVM G+SGA+LELVC YRLHGN+ +M +
Sbjct: 59  IVTAANILEVYMVRVQEDDSRESRASAETKRGGVMAGISGAALELVCQYRLHGNVETMTV 118

Query: 434 LPCXXXXXXXXX-SIILTFDDAKISVLEFDDSVHGLHTSSMHCFEGPEWLHLKRGRETFP 610
           LP           SIIL F DAKISVLEFDDS+HGL TSSMHCFEGPEW HLKRG E+F 
Sbjct: 119 LPSGGGDNSRRRDSIILAFQDAKISVLEFDDSIHGLRTSSMHCFEGPEWFHLKRGHESFA 178

Query: 611 TGPLVKVDPQGRCAGVLVYGLQMIILKAAQAG-GFVGDDSTLGTGGACCARVESSYIISL 787
            GPLVKVDPQGRC+GVLVYGLQMIILKA+QAG G VGD+  L +G A  ARVESSY+ISL
Sbjct: 179 RGPLVKVDPQGRCSGVLVYGLQMIILKASQAGYGLVGDEEALSSGSAVSARVESSYVISL 238

Query: 788 RDLEMKHVKDFVFINGYIEP 847
           RDL+MKHVKDF F++GYIEP
Sbjct: 239 RDLDMKHVKDFTFVHGYIEP 258


>ref|NP_199979.2| cleavage and polyadenylation specificity factor subunit 1
           [Arabidopsis thaliana]
           gi|290457637|sp|Q9FGR0.2|CPSF1_ARATH RecName:
           Full=Cleavage and polyadenylation specificity factor
           subunit 1; AltName: Full=Cleavage and polyadenylation
           specificity factor 160 kDa subunit; Short=AtCPSF160;
           Short=CPSF 160 kDa subunit gi|332008729|gb|AED96112.1|
           cleavage and polyadenylation specificity factor subunit
           1 [Arabidopsis thaliana]
          Length = 1442

 Score =  320 bits (820), Expect = 3e-85
 Identities = 165/262 (62%), Positives = 195/262 (74%), Gaps = 13/262 (4%)
 Frame = +2

Query: 101 MSYAAFKMMHSPTAIETCASGYITHCN-----HLPAIQTQDS--SDWLSIKPNVITSIPN 259
           MS+AA+KMMH PT +E CASGYITH        +P +   D   ++W + K   I  +PN
Sbjct: 1   MSFAAYKMMHWPTGVENCASGYITHSLSDSTLQIPIVSVHDDIEAEWPNPKRG-IGPLPN 59

Query: 260 LVVTAANVLQVYVVRVSDDS----VKGSSEAKRGGVMDGVSGASLELVCHYRLHGNIYSM 427
           +V+TAAN+L+VY+VR  ++     ++    AKRGGVMDGV G SLELVCHYRLHGN+ S+
Sbjct: 60  VVITAANILEVYIVRAQEEGNTQELRNPKLAKRGGVMDGVYGVSLELVCHYRLHGNVESI 119

Query: 428 AILPCXXXXXXXXX-SIILTFDDAKISVLEFDDSVHGLHTSSMHCFEGPEWLHLKRGRET 604
           A+LP           SIILTF DAKISVLEFDDS+H L  +SMHCFEGP+WLHLKRGRE+
Sbjct: 120 AVLPMGGGNSSKGRDSIILTFRDAKISVLEFDDSIHSLRMTSMHCFEGPDWLHLKRGRES 179

Query: 605 FPTGPLVKVDPQGRCAGVLVYGLQMIILKAAQAG-GFVGDDSTLGTGGACCARVESSYII 781
           FP GPLVKVDPQGRC GVLVYGLQMIILK +Q G G VGDD    +GG   ARVESSYII
Sbjct: 180 FPRGPLVKVDPQGRCGGVLVYGLQMIILKTSQVGSGLVGDDDAFSSGGTVSARVESSYII 239

Query: 782 SLRDLEMKHVKDFVFINGYIEP 847
           +LRDLEMKHVKDFVF++GYIEP
Sbjct: 240 NLRDLEMKHVKDFVFLHGYIEP 261


>dbj|BAB11613.1| cleavage and polyadenylation specificity factor subunit
           [Arabidopsis thaliana]
          Length = 1448

 Score =  320 bits (820), Expect = 3e-85
 Identities = 165/262 (62%), Positives = 195/262 (74%), Gaps = 13/262 (4%)
 Frame = +2

Query: 101 MSYAAFKMMHSPTAIETCASGYITHCN-----HLPAIQTQDS--SDWLSIKPNVITSIPN 259
           MS+AA+KMMH PT +E CASGYITH        +P +   D   ++W + K   I  +PN
Sbjct: 1   MSFAAYKMMHWPTGVENCASGYITHSLSDSTLQIPIVSVHDDIEAEWPNPKRG-IGPLPN 59

Query: 260 LVVTAANVLQVYVVRVSDDS----VKGSSEAKRGGVMDGVSGASLELVCHYRLHGNIYSM 427
           +V+TAAN+L+VY+VR  ++     ++    AKRGGVMDGV G SLELVCHYRLHGN+ S+
Sbjct: 60  VVITAANILEVYIVRAQEEGNTQELRNPKLAKRGGVMDGVYGVSLELVCHYRLHGNVESI 119

Query: 428 AILPCXXXXXXXXX-SIILTFDDAKISVLEFDDSVHGLHTSSMHCFEGPEWLHLKRGRET 604
           A+LP           SIILTF DAKISVLEFDDS+H L  +SMHCFEGP+WLHLKRGRE+
Sbjct: 120 AVLPMGGGNSSKGRDSIILTFRDAKISVLEFDDSIHSLRMTSMHCFEGPDWLHLKRGRES 179

Query: 605 FPTGPLVKVDPQGRCAGVLVYGLQMIILKAAQAG-GFVGDDSTLGTGGACCARVESSYII 781
           FP GPLVKVDPQGRC GVLVYGLQMIILK +Q G G VGDD    +GG   ARVESSYII
Sbjct: 180 FPRGPLVKVDPQGRCGGVLVYGLQMIILKTSQVGSGLVGDDDAFSSGGTVSARVESSYII 239

Query: 782 SLRDLEMKHVKDFVFINGYIEP 847
           +LRDLEMKHVKDFVF++GYIEP
Sbjct: 240 NLRDLEMKHVKDFVFLHGYIEP 261