BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Angelica23_contig00015312
         (1083 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsi...    97   2e-21
dbj|BAF00783.1| hypothetical protein [Arabidopsis thaliana]            91   3e-19
emb|CAA72989.1| unnamed protein product [Brassica oleracea var. ...    95   1e-18
gb|AAD15368.1| putative retroelement pol polyprotein [Arabidopsi...    94   2e-18
dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis t...    97   7e-18

>gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1461

 Score = 96.7 bits (239), Expect(2) = 2e-21
 Identities = 59/157 (37%), Positives = 90/157 (57%)
 Frame = +1

Query: 364 SMKIQLTSKRKLGFVKCTETRSVTDAVDAIQWDTCNNMVISWIHNNISDLIKKSILFINF 543
           +M+I L +K KLGFV  +  R +    +   W  CN+MV SW+ N++S  I +SIL +N 
Sbjct: 94  AMRISLDAKNKLGFVDGSLPRPLESDPNFRLWSRCNSMVKSWLLNSVSPQIYRSILRLND 153

Query: 544 ACEI*NVLETRFHVTNGSNGLRKYMLSKEIFSIKQNGMSLVEYFTAISTVWEELDDTKTL 723
           A +I   L  RF++TN     R Y L++EI  ++Q  MSL EY+T + T+W++LD T+ L
Sbjct: 154 ATDIWRDLFDRFNLTNLP---RTYNLTQEIQDLRQGTMSLSEYYTLLKTLWDQLDSTEAL 210

Query: 724 PVIVTQTDEVKAFXXXXXXXXREAKLFQFLNGLDEDY 834
               T    V+ +         +AK+ +FL GL+E Y
Sbjct: 211 DDPCTCGKAVRLY-----QKAEKAKIMKFLAGLNESY 242



 Score = 33.1 bits (74), Expect(2) = 2e-21
 Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 14/89 (15%)
 Frame = +3

Query: 858  SLPTIEIACSVIQQEESQRETLKYVMLP--------------SPEITAMYSKSNTNRITC 995
            +LP++     ++ Q+ SQ+     V  P              SPEI  + S  N  R TC
Sbjct: 254  ALPSLAEVYHILDQDNSQKGFFNVVAPPAAFQVSEVSHSPITSPEIMYVQSGPNKGRPTC 313

Query: 996  YECGGKGHIKEHY*NIIGYPKWHSKYKKS 1082
              C   GHI E      G+P   +   KS
Sbjct: 314  SFCNRVGHIAERCYKKHGFPPGFTPKGKS 342


>dbj|BAF00783.1| hypothetical protein [Arabidopsis thaliana]
          Length = 556

 Score = 90.5 bits (223), Expect(2) = 3e-19
 Identities = 58/159 (36%), Positives = 87/159 (54%)
 Frame = +1

Query: 358 KRSMKIQLTSKRKLGFVKCTETRSVTDAVDAIQWDTCNNMVISWIHNNISDLIKKSILFI 537
           K S+KI L +K KL F+  +  R          W  CN++V SW+ N++S  I KSIL  
Sbjct: 43  KISIKIALDAKNKLVFIDGSVPRPPESDPMFRIWSRCNSLVKSWLLNSVSKPIYKSILRF 102

Query: 538 NFACEI*NVLETRFHVTNGSNGLRKYMLSKEIFSIKQNGMSLVEYFTAISTVWEELDDTK 717
           + A EI N L TR+H+TN     R Y L+++I+S++Q  M L  Y+T + T+W ELD + 
Sbjct: 103 DDASEIWNDLSTRYHITNLP---RSYPLTQQIWSLQQGTMDLTTYYTTLRTLWNELDGSD 159

Query: 718 TLPVIVTQTDEVKAFXXXXXXXXREAKLFQFLNGLDEDY 834
            +  +  + D  KA           A++ +FL GL+E Y
Sbjct: 160 CV-TLCKRCDCCKAM----DKKAEHARVIKFLAGLNESY 193



 Score = 31.6 bits (70), Expect(2) = 3e-19
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 14/79 (17%)
 Frame = +3

Query: 861  LPTIEIACSVIQQEESQRETLKYVMLPS--------------PEITAMYSKSNTNRITCY 998
            +P++    +++ Q+ SQR    +  +PS              P + A ++ +   ++ C 
Sbjct: 206  VPSLAEIYNLLDQDHSQRS---FTPVPSNAAAFIVSAPEQVQPSVNATFNNAKPQKVICS 262

Query: 999  ECGGKGHIKEHY*NIIGYP 1055
             CG  GH  +    I GYP
Sbjct: 263  HCGYTGHTVDRCYKIHGYP 281


>emb|CAA72989.1| unnamed protein product [Brassica oleracea var. acephala]
          Length = 1131

 Score = 95.1 bits (235), Expect(2) = 1e-18
 Identities = 58/159 (36%), Positives = 88/159 (55%), Gaps = 2/159 (1%)
 Frame = +1

Query: 364 SMKIQLTSKRKLGFVKCTETRSVTDAVDAIQWDTCNNMVISWIHNNISDLIKKSILFINF 543
           +MKI L +K K+GFV  T TR  T       W  CN+MV SW+ N++S  I +SIL +N 
Sbjct: 43  AMKIALDAKNKIGFVDGTLTRPDTSDPTFRLWSRCNSMVKSWLLNSVSPQIYRSILRLND 102

Query: 544 ACEI*NVLETRFHVTNGSNGLRKYMLSKEIFSIKQNGMSLVEYFTAISTVWEELD--DTK 717
           A +I   L  RFH+TN     R + L++EI  +KQ  MSL +Y+T + T+W+ L+  D  
Sbjct: 103 AADIWRDLHGRFHMTNLP---RTFNLTQEIQDLKQGSMSLSDYYTTLKTLWDNLESVDEP 159

Query: 718 TLPVIVTQTDEVKAFXXXXXXXXREAKLFQFLNGLDEDY 834
             P +    ++++            AK+ +FL GL++ Y
Sbjct: 160 DTPCVCGNAEKLQ-------KKVDRAKIVKFLAGLNDSY 191



 Score = 25.0 bits (53), Expect(2) = 1e-18
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 14/86 (16%)
 Frame = +3

Query: 861  LPTIEIACSVIQQEESQR-----------ETLKYVMLPSPEITAMYSKSNTN--RITCYE 1001
            LP++    +++ Q++SQ+              + V  P  E    Y ++  N  R  C  
Sbjct: 204  LPSLVEVYNILDQDDSQKGFSTAITPAAFNVSENVPPPMAEAGICYVQTGPNKGRPICSF 263

Query: 1002 CGGKGHIKEHY*NIIGYPK-WHSKYK 1076
            C   GHI E      G+P  + SKYK
Sbjct: 264  CNRVGHIAERCYKKHGFPPGFVSKYK 289


>gb|AAD15368.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
           gi|17065314|gb|AAL32811.1| putative retroelement pol
           polyprotein [Arabidopsis thaliana]
           gi|21387147|gb|AAM47977.1| putative retroelement pol
           polyprotein [Arabidopsis thaliana]
          Length = 411

 Score = 93.6 bits (231), Expect(2) = 2e-18
 Identities = 59/157 (37%), Positives = 84/157 (53%)
 Frame = +1

Query: 364 SMKIQLTSKRKLGFVKCTETRSVTDAVDAIQWDTCNNMVISWIHNNISDLIKKSILFINF 543
           +M+I L +K KLGFV  +  R   D      W  CN+MV SWI N ++  I  SIL+   
Sbjct: 95  AMRISLDAKNKLGFVDGSLLRPSVDDSTFRIWSRCNSMVKSWILNVVNKEIYDSILYYED 154

Query: 544 ACEI*NVLETRFHVTNGSNGLRKYMLSKEIFSIKQNGMSLVEYFTAISTVWEELDDTKTL 723
           A E+   L TRF V N     RKY L + + ++KQ  ++L  YFT   T+WE+L +TKT 
Sbjct: 155 AVEMWTDLFTRFRVNNLP---RKYQLEQAVMTLKQGSLNLSTYFTKKKTLWEQLLNTKTR 211

Query: 724 PVIVTQTDEVKAFXXXXXXXXREAKLFQFLNGLDEDY 834
            V     D+VK            +++ QFL GL++D+
Sbjct: 212 SVKKCDCDQVKEL----LEDAETSRVIQFLMGLNDDF 244



 Score = 26.2 bits (56), Expect(2) = 2e-18
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 13/82 (15%)
 Frame = +3

Query: 864  PTIEIACSVIQQEESQRETLKYVMLPSPEITA-------------MYSKSNTNRITCYEC 1004
            P +    +++ Q+ESQR  + +   P+P   A             + ++ N  +  C  C
Sbjct: 258  PGLNEIYNMLDQDESQR-LVGHASKPTPSPAAFQTQGLLTEQNPILMAQGNFKKPKCTHC 316

Query: 1005 GGKGHIKEHY*NIIGYPKWHSK 1070
               GH  +    + GYP  H +
Sbjct: 317  NRIGHTVDKCYKVHGYPPGHPR 338


>dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1475

 Score = 97.1 bits (240), Expect = 7e-18
 Identities = 58/159 (36%), Positives = 87/159 (54%)
 Frame = +1

Query: 358 KRSMKIQLTSKRKLGFVKCTETRSVTDAVDAIQWDTCNNMVISWIHNNISDLIKKSILFI 537
           K +M + L +K K+ FV  T  R          W  CN+MV SWI N+++  I KSIL  
Sbjct: 90  KIAMFVSLYAKNKIAFVDGTLPRPPESDPSFRVWSRCNSMVKSWILNSVTKQIYKSILRF 149

Query: 538 NFACEI*NVLETRFHVTNGSNGLRKYMLSKEIFSIKQNGMSLVEYFTAISTVWEELDDTK 717
           N A EI   L+TRFH+TN     R Y L+++I+S++Q  MSL +Y+TA+ T+W++LD   
Sbjct: 150 NDAAEIWKDLDTRFHITNLP---RSYQLTQQIWSLQQGTMSLSDYYTALKTLWDDLDGAS 206

Query: 718 TLPVIVTQTDEVKAFXXXXXXXXREAKLFQFLNGLDEDY 834
            +      T  +             +K+ +FL+GL+E Y
Sbjct: 207 CVSTCKNCTCCIAT-----ASMIEHSKIVKFLSGLNESY 240