BLASTX nr result
ID: Angelica23_contig00010907
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Angelica23_contig00010907
(2735 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 809 0.0
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 808 0.0
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum] 795 0.0
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa... 805 0.0
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper... 795 0.0
>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 809 bits (2089), Expect(2) = 0.0
Identities = 403/555 (72%), Positives = 468/555 (84%), Gaps = 3/555 (0%)
Frame = -2
Query: 1657 YSTARRQWIAPAITLDAGLVYVHRVQITPSRVFFCGPEVNVSNRVLRNFSKDLDNFLRVS 1478
+S +R+ +P I+LD GLVYV RVQITPSRV+FCGPE+NVSNRVLR F D+DNFLR+S
Sbjct: 345 FSRSRKYQGSPTISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRIS 404
Query: 1477 FVDEEWNKLFSTDLYARKRKTGIYKRILSILKNGIVIGSKKFEFLAFSSSQLRDNSAWMF 1298
FVDEE K+ ST++ AR R+TGIYKRILS L+NGIVIG+K+FEFLAFSSSQLR+NSAWMF
Sbjct: 405 FVDEELEKIHSTNVQARGRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMF 464
Query: 1297 ASTENLCASDIRNWMGDFSDIRNVAKCAARLGQSFSSSTETLTVPENEIEIIPDVE---N 1127
AS + L A+DIR+WMG+FS IRNVAK AARLGQSFSSSTETL+V ++EI +IPD+E +
Sbjct: 465 ASRKGLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKD 524
Query: 1126 GTRYIFSDGIGKISDDFAKKVAAKCGLKSSTPSAFQIRYGGYKGVVAVDRTSSWKLSLRK 947
G +Y+FSDGIGKIS +FAKKVAAKC LK TPSAFQIR GG+KGVVA+D TSSWKLSLRK
Sbjct: 525 GIKYVFSDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRK 584
Query: 946 SMCKYVSSNIGLDVLAWSKYQPCYLNRQVISLLSTLGVKDHVFEKIQREAVNQLDMILEH 767
SM KY S N LDVLAWSKYQPC+LNRQ+I+LLSTLGV D FEK QRE V+QL+ +L
Sbjct: 585 SMEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTD 644
Query: 766 PLKAQEALDLMYQGENSNVLKEMLKCGYMPKAEPFLLMMLQTFRASKLLDVRTKSRIFIR 587
PL+AQEAL+LM GEN+N+LKEML CGY P AEPFL MML+TFRASKLL++RTK+RIF++
Sbjct: 645 PLEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQ 704
Query: 586 GGRSMMGCLDETRSLEYGQVFVQYSGYGRRAFYDDSLMMHYDDGRKSIAKGKVLVAKNPC 407
GRSMMGCLDETR+L YGQVFVQ+SG R+ I +GKV+VAKNPC
Sbjct: 705 KGRSMMGCLDETRTLNYGQVFVQFSGSRSE--------------RRFIVQGKVIVAKNPC 750
Query: 406 LHPGDIRVLKAVDVPALHHMVDCIVFPQKGTRPHPNECSGSDLDGDIYFVCWDHELIPPK 227
LHPGD+RVL+AV+VP LHHMVDC+VFPQKGTRPHPNECSGSDLDGD+YFVCWD ELIP K
Sbjct: 751 LHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYK 810
Query: 226 LEQPMDYTSAASIQLDHEVTIEEIQEYFANYIVNDSLGIIANAHTVFADRELSKAMSEPC 47
PMDY+ A++ +LDHEVTIEEI+EYF NYIVNDSLGII+NAHT FADRE KAMS PC
Sbjct: 811 QIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRPC 870
Query: 46 LELAKLFSVAVDFPK 2
LELAKLFS+AVDFPK
Sbjct: 871 LELAKLFSIAVDFPK 885
Score = 276 bits (705), Expect(2) = 0.0
Identities = 149/324 (45%), Positives = 213/324 (65%), Gaps = 12/324 (3%)
Frame = -3
Query: 2706 MGRTIHVSGFRNLPPAEDLKALLEKYTGNDTVYAVEVKESRTQGNAPYARIQFINSRNAE 2527
MG+TI V GF + A ++K LE YTG +TVYA+++++ + G A +A +QF S +A
Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSGRA-FAIVQFTRSSDAG 59
Query: 2526 YIIALTDQRRLWYGARYLRAWANDIDIIKNPKLRTVVDQMEHVTLHFGCQISKKSYSVFW 2347
II L +QR L+YG YL+A + DI+ PK R + ME VT++FGCQ+S++ + V W
Sbjct: 60 LIIRLANQR-LYYGRSYLKAREMETDIV--PKPRVFLHTMERVTVNFGCQVSEEKFYVLW 116
Query: 2346 KKTDVNVQFGSGLHKFYFSMSHESVDYKLQLSSENIWKIELRHPRSQIKKFILIQLSGAP 2167
K +V + FG+G+ K F +S+ S YKL+L ENIW+IELR P SQ K +LIQL GAP
Sbjct: 117 KADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAP 176
Query: 2166 RIFEK--------LKDSVLSFFLETPEDHWVRATDFTPSLALGQSSALCLEIPHGADTPD 2011
RI+EK D +L++F + P+D WVR TDFT S +GQSS L LE+PH P+
Sbjct: 177 RIYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLPN 236
Query: 2010 FGES-VIYQQTDGQFELVSGSTFSNNLDLVPMSTPPRRVRLSYKIYFKICILVQNGYIPG 1834
F E+ Y++ +G+ L SGS++S NL LVP+ P R + L ++I FK+ +LVQNG IPG
Sbjct: 237 FRENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPG 296
Query: 1833 PAIDDRFYKLVG---INEAFTEHA 1771
PA+DD FY+LV +++ + +HA
Sbjct: 297 PALDDTFYRLVDPCRMHKVYIDHA 320
>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 808 bits (2086), Expect(2) = 0.0
Identities = 402/555 (72%), Positives = 468/555 (84%), Gaps = 3/555 (0%)
Frame = -2
Query: 1657 YSTARRQWIAPAITLDAGLVYVHRVQITPSRVFFCGPEVNVSNRVLRNFSKDLDNFLRVS 1478
+S +R+ +P I+LD GLVYV RVQITPSRV+FCGPE+NVSNRVLR F D+DNFLR+S
Sbjct: 345 FSRSRKYQGSPTISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRIS 404
Query: 1477 FVDEEWNKLFSTDLYARKRKTGIYKRILSILKNGIVIGSKKFEFLAFSSSQLRDNSAWMF 1298
FVDEE K+ ST++ AR R+TGIYKRILS L+NGIVIG+K+FEFLAFSSSQLR+NSAWMF
Sbjct: 405 FVDEELEKIHSTNVQARGRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMF 464
Query: 1297 ASTENLCASDIRNWMGDFSDIRNVAKCAARLGQSFSSSTETLTVPENEIEIIPDVE---N 1127
AS + L A+DIR+WMG+FS IRNVAK AARLGQSFSSSTETL+V ++EI +IPD+E +
Sbjct: 465 ASRKGLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKD 524
Query: 1126 GTRYIFSDGIGKISDDFAKKVAAKCGLKSSTPSAFQIRYGGYKGVVAVDRTSSWKLSLRK 947
G +Y+F DGIGKIS +FAKKVAAKC LK TPSAFQIR GG+KGVVA+D TSSWKLSLRK
Sbjct: 525 GIKYVFPDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRK 584
Query: 946 SMCKYVSSNIGLDVLAWSKYQPCYLNRQVISLLSTLGVKDHVFEKIQREAVNQLDMILEH 767
SM KY S N LDVLAWSKYQPC+LNRQ+I+LLSTLGV D+ FEK QRE V+QL+ +L
Sbjct: 585 SMEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTD 644
Query: 766 PLKAQEALDLMYQGENSNVLKEMLKCGYMPKAEPFLLMMLQTFRASKLLDVRTKSRIFIR 587
PL+AQEAL+LM GEN+N+LKEML CGY P AEPFL MML+TFRASKLL++RTK+RIF++
Sbjct: 645 PLEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQ 704
Query: 586 GGRSMMGCLDETRSLEYGQVFVQYSGYGRRAFYDDSLMMHYDDGRKSIAKGKVLVAKNPC 407
GRSMMGCLDETR+L YGQVFVQ+SG R+ I +GKV+VAKNPC
Sbjct: 705 KGRSMMGCLDETRTLNYGQVFVQFSGSRSE--------------RRFIVQGKVIVAKNPC 750
Query: 406 LHPGDIRVLKAVDVPALHHMVDCIVFPQKGTRPHPNECSGSDLDGDIYFVCWDHELIPPK 227
LHPGD+RVL+AV+VP LHHMVDC+VFPQKGTRPHPNECSGSDLDGD+YFVCWD ELIP K
Sbjct: 751 LHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYK 810
Query: 226 LEQPMDYTSAASIQLDHEVTIEEIQEYFANYIVNDSLGIIANAHTVFADRELSKAMSEPC 47
PMDY+ A++ +LDHEVTIEEI+EYF NYIVNDSLGII+NAHT FADRE KAMS PC
Sbjct: 811 QIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPC 870
Query: 46 LELAKLFSVAVDFPK 2
LELAKLFS+AVDFPK
Sbjct: 871 LELAKLFSIAVDFPK 885
Score = 275 bits (704), Expect(2) = 0.0
Identities = 148/324 (45%), Positives = 212/324 (65%), Gaps = 12/324 (3%)
Frame = -3
Query: 2706 MGRTIHVSGFRNLPPAEDLKALLEKYTGNDTVYAVEVKESRTQGNAPYARIQFINSRNAE 2527
MG+TI V GF + A ++K LE YTG +TVYA+++++ + G A +A +QF S +A
Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSGRA-FAIVQFTRSSDAG 59
Query: 2526 YIIALTDQRRLWYGARYLRAWANDIDIIKNPKLRTVVDQMEHVTLHFGCQISKKSYSVFW 2347
II L +QR L+YG YL+A + DI+ PK R + ME VT++F C +S++ + V W
Sbjct: 60 LIIRLANQR-LYYGRSYLKAREMETDIV--PKPRVFLHTMERVTVNFDCHVSEEKFYVLW 116
Query: 2346 KKTDVNVQFGSGLHKFYFSMSHESVDYKLQLSSENIWKIELRHPRSQIKKFILIQLSGAP 2167
K +V + FG+G+ K F +S+ S YKL+L ENIW+IELR P SQ K +LIQL GAP
Sbjct: 117 KADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAP 176
Query: 2166 RIFEK--------LKDSVLSFFLETPEDHWVRATDFTPSLALGQSSALCLEIPHGADTPD 2011
RI+EK D +L++F + P+D WVR TDFT S +GQSS LCLE+PH P+
Sbjct: 177 RIYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLPN 236
Query: 2010 FGES-VIYQQTDGQFELVSGSTFSNNLDLVPMSTPPRRVRLSYKIYFKICILVQNGYIPG 1834
F E+ Y++ +G+ L SGS++S NL LVP+ P R + L ++I FK+ +LVQNG IPG
Sbjct: 237 FRENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPG 296
Query: 1833 PAIDDRFYKLVG---INEAFTEHA 1771
PA+DD FY+LV +++ + +HA
Sbjct: 297 PALDDTFYRLVDPCRMHKVYIDHA 320
>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
Length = 1116
Score = 795 bits (2053), Expect(2) = 0.0
Identities = 403/564 (71%), Positives = 463/564 (82%), Gaps = 11/564 (1%)
Frame = -2
Query: 1660 KYSTARRQWIAPAITLDAGLVYVHRVQITPSRVFFCGPEVNVSNRVLRNFSKDLDNFLRV 1481
+Y R+ +P ITLD GLVYV RV +TP +V+FCGPEVNVSNRVLRN+S+D++NFLRV
Sbjct: 335 EYLKGRQLPKSPPITLDDGLVYVRRVVVTPCKVYFCGPEVNVSNRVLRNYSEDINNFLRV 394
Query: 1480 SFVDEEWNKLFSTDLYARKR-----KTGIYKRILSILKNGIVIGSKKFEFLAFSSSQLRD 1316
SFVDEEW K+ STDL R +T IY+RILS L+NG +IG K+FEFLAFSSSQLRD
Sbjct: 395 SFVDEEWEKIHSTDLLPRASTGNGTRTDIYERILSTLRNGFIIGDKRFEFLAFSSSQLRD 454
Query: 1315 NSAWMFASTENLCASDIRNWMGDFSDIRNVAKCAARLGQSFSSSTETLTVPENEIEIIPD 1136
NS WMFAS L A+DIR WMGDF IRNVAK AARLGQSF SS ETL+V +E+E+IPD
Sbjct: 455 NSVWMFASRPGLTANDIRTWMGDFRQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPD 514
Query: 1135 VE---NGTRYIFSDGIGKISDDFAKKVAAKCGLKSSTPSAFQIRYGGYKGVVAVDRTSSW 965
V +GT YIFSDGIGKIS DFA +V KCGL+ TPS+FQIRYGGYKGVVAVD SS
Sbjct: 515 VACSLHGTNYIFSDGIGKISADFAHRVTIKCGLQY-TPSSFQIRYGGYKGVVAVDPYSSM 573
Query: 964 KLSLRKSMCKYVSSNIGLDVLAWSKYQPCYLNRQVISLLSTLGVKDHVFEKIQREAVNQL 785
KLSLRKSM KY S+NI LDVL WSKYQPCYLNRQ+++LLSTLGV D V E+ Q EAV+QL
Sbjct: 574 KLSLRKSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVIDDVLEQKQNEAVDQL 633
Query: 784 DMILEHPLKAQEALDLMYQGENSNVLKEMLKCGYMPKAEPFLLMMLQTFRASKLLDVRTK 605
D IL LKAQEAL+LM GEN+N+LKEML CGYMP AEPFL MMLQTFRASKLLD+RT+
Sbjct: 634 DAILHDSLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTR 693
Query: 604 SRIFIRGGRSMMGCLDETRSLEYGQVFVQYSGYGRRAFYDDSLMMHYDDGRKS---IAKG 434
+RIFI GR+MMGCLDE+R+LEYGQVFVQ+SG GRR F+++S + D G + I KG
Sbjct: 694 TRIFIPNGRTMMGCLDESRTLEYGQVFVQFSGAGRRQFFEESHPFN-DSGSANCDFILKG 752
Query: 433 KVLVAKNPCLHPGDIRVLKAVDVPALHHMVDCIVFPQKGTRPHPNECSGSDLDGDIYFVC 254
V+VAKNPCLHPGDIRVL+AVDVPALHHMVDC+VFPQKG RPHPNECSGSDLDGDIYFVC
Sbjct: 753 NVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVC 812
Query: 253 WDHELIPPKLEQPMDYTSAASIQLDHEVTIEEIQEYFANYIVNDSLGIIANAHTVFADRE 74
WD +LIPP+ Q MDYT A + QLDH+VTIEE++EYF NYI+NDSLGIIANAH VFADRE
Sbjct: 813 WDPDLIPPRQVQSMDYTPAPTTQLDHDVTIEEVEEYFTNYIINDSLGIIANAHVVFADRE 872
Query: 73 LSKAMSEPCLELAKLFSVAVDFPK 2
AMS+PC +LA+LFS+AVDFPK
Sbjct: 873 PDMAMSDPCKQLAQLFSIAVDFPK 896
Score = 280 bits (715), Expect(2) = 0.0
Identities = 159/318 (50%), Positives = 212/318 (66%), Gaps = 6/318 (1%)
Frame = -3
Query: 2706 MGRTIHVSGFRNLPPAEDLKALLEKYTGNDTVYAVEVKESRTQGNAPYARIQFINSRNAE 2527
MG+TI V GF L AE +K LE +TGN TVYA+EVK+S+ G +A++QF N+++AE
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKKFLENHTGNGTVYALEVKQSKG-GRRAFAKVQFANNKSAE 59
Query: 2526 YIIALTDQRRLWYGARYLRAWANDIDIIKNPKLRTVVDQMEHVTLHFGCQISKKSYSVFW 2347
+II L + L+YG YL+AW DI++ RT V+ M+ VTL+FGCQIS K ++V
Sbjct: 60 FIIDLAS-KGLYYGPSYLKAWEMKTDIVQP---RTYVEHMDGVTLNFGCQISDKKFAVLG 115
Query: 2346 KKTDVNVQFGSGLHKFYFSMSHESVDYKLQLSSENIWKIELRHPRSQIKKFILIQLSGAP 2167
K DV+++FG GL K YF +SH S DYKLQLS ENIW++ L P Q +F+L+QL GAP
Sbjct: 116 SK-DVSIKFGIGLKKIYFFLSHASADYKLQLSYENIWQVVLHRPYGQNAQFLLLQLFGAP 174
Query: 2166 RIFEKLKDSVLSFFLETPEDHWVRATDFTPSLALGQSSALCLEIPHGADTPDFGESVI-Y 1990
RI+++L+DS SFF ETP+D WVR TDFTPS +G SS+LCLE +G P+F ES Y
Sbjct: 175 RIYKRLEDSCYSFFKETPDDQWVRTTDFTPSW-IGLSSSLCLEFRNGVQLPNFSESFFYY 233
Query: 1989 QQTDGQFELVSGST--FSNNLDLVPMSTPPRRVRLSYKIYFKICILVQNGYIPGPAIDDR 1816
+++ QF L +G T FS L LVP+ P + L YKI FKI L+Q+G PG A++
Sbjct: 234 KESMNQFILQTGFTFSFSQKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGLALNFN 293
Query: 1815 FYKLVG---INEAFTEHA 1771
F++LV N A EHA
Sbjct: 294 FFQLVDPRRRNIACIEHA 311
>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
[Nicotiana glutinosa]
Length = 1117
Score = 805 bits (2079), Expect(2) = 0.0
Identities = 409/564 (72%), Positives = 465/564 (82%), Gaps = 11/564 (1%)
Frame = -2
Query: 1660 KYSTARRQWIAPAITLDAGLVYVHRVQITPSRVFFCGPEVNVSNRVLRNFSKDLDNFLRV 1481
+Y R+ +P+ITLD GLVYV RV +TP +V+FCGPEVNVSNRVLRN+S+D+DNFLRV
Sbjct: 336 EYLKRRQLPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRV 395
Query: 1480 SFVDEEWNKLFSTDLYARKR-----KTGIYKRILSILKNGIVIGSKKFEFLAFSSSQLRD 1316
SFVDEEW K+ STDL R +T IY RILS L+NG VIG KKFEFLAFSSSQLRD
Sbjct: 396 SFVDEEWEKIHSTDLLPRASTGNGVRTDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRD 455
Query: 1315 NSAWMFASTENLCASDIRNWMGDFSDIRNVAKCAARLGQSFSSSTETLTVPENEIEIIPD 1136
NS WMFAS L A+DIR WMG F IRNVAK AARLGQSF SS ETL+V +E+E+IPD
Sbjct: 456 NSVWMFASRPGLTANDIRTWMGGFQQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPD 515
Query: 1135 VE---NGTRYIFSDGIGKISDDFAKKVAAKCGLKSSTPSAFQIRYGGYKGVVAVDRTSSW 965
V +GT YIFSDGIGKIS DFA++VA KCGL+ TPS FQIRYGGYKGVVAVD SS
Sbjct: 516 VVCSLHGTNYIFSDGIGKISADFARRVAVKCGLQY-TPSCFQIRYGGYKGVVAVDPYSSM 574
Query: 964 KLSLRKSMCKYVSSNIGLDVLAWSKYQPCYLNRQVISLLSTLGVKDHVFEKIQREAVNQL 785
KLSLR SM KY S+NI LDVL WSKYQPCYLNRQ+++LLSTLGVKD VFE+ Q EAV+QL
Sbjct: 575 KLSLRNSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQL 634
Query: 784 DMILEHPLKAQEALDLMYQGENSNVLKEMLKCGYMPKAEPFLLMMLQTFRASKLLDVRTK 605
D IL LKAQEAL+LM GEN+N+LKEML CGYMP AEPFL MMLQTFRASKLLD+RT+
Sbjct: 635 DAILHDTLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTR 694
Query: 604 SRIFIRGGRSMMGCLDETRSLEYGQVFVQYSGYGRRAFYDDSLMMHYDDGRKS---IAKG 434
SRIFI GR+MMGCLDE+R+LEYGQVFVQ++G GRR FY++S + D G + I +G
Sbjct: 695 SRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGTGRRQFYEESHPFN-DSGSTNCDFILEG 753
Query: 433 KVLVAKNPCLHPGDIRVLKAVDVPALHHMVDCIVFPQKGTRPHPNECSGSDLDGDIYFVC 254
V+VAKNPCLHPGDIRVL+AVDVPALHHMVDC+VFPQKG RPHPNECSGSDLDGDIYFVC
Sbjct: 754 NVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVC 813
Query: 253 WDHELIPPKLEQPMDYTSAASIQLDHEVTIEEIQEYFANYIVNDSLGIIANAHTVFADRE 74
WD +L+PP+ QPMDYT A S QLDH+VTIEE++EYF NYIVNDSLGIIANAH VFADRE
Sbjct: 814 WDPDLVPPRQFQPMDYTPAPSTQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADRE 873
Query: 73 LSKAMSEPCLELAKLFSVAVDFPK 2
AMS+PC +LA+LFS+AVDFPK
Sbjct: 874 PDMAMSDPCKQLAQLFSIAVDFPK 897
Score = 268 bits (685), Expect(2) = 0.0
Identities = 156/319 (48%), Positives = 208/319 (65%), Gaps = 7/319 (2%)
Frame = -3
Query: 2706 MGRTIHVSGFRNLPPAEDLKALLEKYTGNDTVYAVEVKESRTQGNAPYARIQFINSRNAE 2527
MG+TI V GF L AE +K LE +TGN TVYA+EVK+S+ G +A++QF N+++AE
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEVKQSKG-GRRAFAKVQFANNKSAE 59
Query: 2526 YIIALTDQRRLWYGARYLRAWANDIDIIKNPKLRTVVDQMEHVTLHFGCQISKKSYSVFW 2347
II L + L+YG YL+AW I++ RT V M+ VTL+FGCQIS K ++V
Sbjct: 60 IIIDLAS-KGLYYGPSYLKAWEMKTYIVQP---RTYVQHMDGVTLNFGCQISDKKFAVLG 115
Query: 2346 KKTDVNVQFGSGLHKFYFSMSHESVDYKLQLSSENIWKIELRHPRSQIKKFILIQLSGAP 2167
K V+++FG GL K YF +S+ S DYKLQLS ENIW++ L P Q +F+L+QLSGAP
Sbjct: 116 SKV-VSIKFGIGLKKIYFFLSYGSTDYKLQLSYENIWQVVLHRPYGQKAQFLLLQLSGAP 174
Query: 2166 RIFEKLKDSVLSFFLETPEDHWVRATDFTPSLALGQSSALCLEIPHGADTPDFGESVI-Y 1990
RI+++L+DS SFF ETP+D WVR TDFTPS +G SS+LCLE +G P+F ES Y
Sbjct: 175 RIYKRLEDSCYSFFKETPDDQWVRTTDFTPSW-IGLSSSLCLEFHNGVRLPNFSESFFYY 233
Query: 1989 QQTDGQFELVSGSTFS---NNLDLVPMSTPPRRVRLSYKIYFKICILVQNGYIPGPAIDD 1819
+++ Q L +G TFS L LVP+ P + L YKI FKI L+Q+G PG A++
Sbjct: 234 KESANQVILQTGFTFSFSQKKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGLALNF 293
Query: 1818 RFYKLVG---INEAFTEHA 1771
F++LV N A EHA
Sbjct: 294 NFFQLVDPRRRNIACIEHA 312
>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
[Solanum lycopersicum]
Length = 1114
Score = 795 bits (2052), Expect(2) = 0.0
Identities = 404/562 (71%), Positives = 463/562 (82%), Gaps = 10/562 (1%)
Frame = -2
Query: 1657 YSTARRQWIAPAITLDAGLVYVHRVQITPSRVFFCGPEVNVSNRVLRNFSKDLDNFLRVS 1478
Y R+ +P+ITLD GLVYV RV +TP +V+FCGPEVNVSNRVLRN+S+D+DNFLRVS
Sbjct: 336 YLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVS 395
Query: 1477 FVDEEWNKLFSTDLYARKR-----KTGIYKRILSILKNGIVIGSKKFEFLAFSSSQLRDN 1313
FVDEEW KL+STDL + +T IY+RILS L+ G VIG KKFEFLAFSSSQLRDN
Sbjct: 396 FVDEEWEKLYSTDLLPKASTGSGVRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDN 455
Query: 1312 SAWMFASTENLCASDIRNWMGDFSDIRNVAKCAARLGQSFSSSTETLTVPENEIEIIPDV 1133
S WMFAS L A+DIR WMGDFS I+NVAK AARLGQSF SS ETL+V +EIE+IPDV
Sbjct: 456 SVWMFASRPGLTANDIRAWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDV 515
Query: 1132 E-NGTRYIFSDGIGKISDDFAKKVAAKCGLKSSTPSAFQIRYGGYKGVVAVDRTSSWKLS 956
+ +GT Y+FSDGIGKIS DFA +VA+KCGL+ TPSAFQIRYGGYKGVV VD SS KLS
Sbjct: 516 KVHGTSYVFSDGIGKISGDFAHRVASKCGLQY-TPSAFQIRYGGYKGVVGVDPDSSMKLS 574
Query: 955 LRKSMCKYVSSNIGLDVLAWSKYQPCYLNRQVISLLSTLGVKDHVFEKIQREAVNQLDMI 776
LRKSM KY S NI LDVL WSKYQPCYLNRQ+I+LLSTLGVKD V E+ Q+EAV+QLD I
Sbjct: 575 LRKSMSKYESDNIKLDVLGWSKYQPCYLNRQLITLLSTLGVKDEVLEQKQKEAVDQLDAI 634
Query: 775 LEHPLKAQEALDLMYQGENSNVLKEMLKCGYMPKAEPFLLMMLQTFRASKLLDVRTKSRI 596
L LKAQEAL+LM GEN+N+LK ML CGY P AEPFL MMLQTFRASKLLD+RT+SRI
Sbjct: 635 LHDSLKAQEALELMSPGENTNILKAMLNCGYKPDAEPFLSMMLQTFRASKLLDLRTRSRI 694
Query: 595 FIRGGRSMMGCLDETRSLEYGQVFVQYSGYGRRAFYDDSLMMHYDDGRKS----IAKGKV 428
FI GR+MMGCLDE+R+LEYGQVFVQ++G G F DD + +++ R + I KG V
Sbjct: 695 FIPNGRTMMGCLDESRTLEYGQVFVQFTGAGHGEFSDD--LHPFNNSRSTNSNFILKGNV 752
Query: 427 LVAKNPCLHPGDIRVLKAVDVPALHHMVDCIVFPQKGTRPHPNECSGSDLDGDIYFVCWD 248
+VAKNPCLHPGDIRVLKAV+V ALHHMVDC+VFPQKG RPHPNECSGSDLDGDIYFVCWD
Sbjct: 753 VVAKNPCLHPGDIRVLKAVNVRALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWD 812
Query: 247 HELIPPKLEQPMDYTSAASIQLDHEVTIEEIQEYFANYIVNDSLGIIANAHTVFADRELS 68
++IPP+ QPM+Y A SIQLDH+VTIEE++EYF NYIVNDSLGIIANAH VFADRE
Sbjct: 813 QDMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPD 872
Query: 67 KAMSEPCLELAKLFSVAVDFPK 2
AMS+PC +LA+LFS+AVDFPK
Sbjct: 873 MAMSDPCKKLAELFSIAVDFPK 894
Score = 267 bits (682), Expect(2) = 0.0
Identities = 154/318 (48%), Positives = 209/318 (65%), Gaps = 6/318 (1%)
Frame = -3
Query: 2706 MGRTIHVSGFRNLPPAEDLKALLEKYTGNDTVYAVEVKESRTQGNAPYARIQFINSRNAE 2527
MG+TI V GF L AE +K+ LEKYTG TV A+EVK+S+ G+ +A++QF ++ +A+
Sbjct: 1 MGKTIQVFGFPYLLSAEVVKSFLEKYTGYGTVCALEVKQSKG-GSRAFAKVQFADNISAD 59
Query: 2526 YIIALTDQRRLWYGARYLRAWANDIDIIKNPKLRTVVDQMEHVTLHFGCQISKKSYSVFW 2347
II L + R L++G+ YL+AW DI++ LR VDQM+ +TL+FGCQIS ++V
Sbjct: 60 KIITLANNR-LYFGSSYLKAWEMKTDIVQ---LRAYVDQMDGITLNFGCQISDDKFAVLG 115
Query: 2346 KKTDVNVQFGSGLHKFYFSMSHESVDYKLQLSSENIWKIELRHPRSQIKKFILIQLSGAP 2167
T+V++QFG GL KF+F +S S DYKLQLS ENIW++ L P Q +F+LIQL GAP
Sbjct: 116 S-TEVSIQFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAP 174
Query: 2166 RIFEKLKDSVLSFFLETPEDHWVRATDFTPSLALGQSSALCLEIPHGADTPDFGESVI-Y 1990
RI+++L++S SFF ETP+D WVR TDF PS +G SS+LCL+ G P+F ES Y
Sbjct: 175 RIYKRLENSCYSFFKETPDDQWVRTTDFPPSW-IGLSSSLCLQFRRGVRLPNFEESFFHY 233
Query: 1989 QQTDGQFELVSGSTF--SNNLDLVPMSTPPRRVRLSYKIYFKICILVQNGYIPGPAIDDR 1816
+ + L +G TF S LVP PP + + YKI FKI LVQ+G IPGPA++
Sbjct: 234 AERENNITLQTGFTFFVSQKSALVPNVQPPEGISIPYKILFKISSLVQHGCIPGPALNVY 293
Query: 1815 FYKLVG---INEAFTEHA 1771
F++LV N A EHA
Sbjct: 294 FFRLVDPRRRNVACIEHA 311