BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Angelica23_contig00004459
         (1763 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270186.1| PREDICTED: uncharacterized RNA pseudouridine...   512   e-142
ref|XP_002311995.1| predicted protein [Populus trichocarpa] gi|2...   502   e-139
ref|XP_004140075.1| PREDICTED: uncharacterized RNA pseudouridine...   497   e-138
ref|XP_002879786.1| pseudouridine synthase family protein [Arabi...   483   e-134
ref|NP_181447.2| suppressor of variegation1 causing pseudouridin...   478   e-132

>ref|XP_002270186.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464 isoform
            1 [Vitis vinifera]
          Length = 393

 Score =  512 bits (1319), Expect = e-142
 Identities = 262/396 (66%), Positives = 311/396 (78%), Gaps = 1/396 (0%)
 Frame = +3

Query: 33   AVSLSYAVLSTSLHHLSRPVFLKPRYLRTL-IXXXXXXXXXXXXNFNITFAXXXXXXXXX 209
            A +++ A  + S  HLSRP   + R+ RT+ +             FNI+FA         
Sbjct: 9    AAAVAAASAAFSSFHLSRPSLAR-RHFRTIPVRSSISPPSTTSAEFNISFAP-------- 59

Query: 210  XNQHSSPEDFAQQLYIPWIVRDENGNLTLQSSPPARLLHAISDAKTGSPVSXXXXXXXQE 389
              +  +P+  ++ L IPWIVRDENGNL +QS+PP R L  ++ AK  S            
Sbjct: 60   --KSKNPKPQSETLLIPWIVRDENGNLRVQSTPPERYLQDMAKAKALSAKKKKKKEESTA 117

Query: 390  GLSTPEPKHSKAARRFYNDNFRDPPQRLSKVLAAAGVASRRSSEQLVFQGKVTVNGSVCN 569
                 EPK+SKAARRFYN+NFRDPPQRLSKVLAAAGVASRR+SE+L+F+G+VTVNGSVCN
Sbjct: 118  RAVAVEPKYSKAARRFYNENFRDPPQRLSKVLAAAGVASRRNSEELIFEGRVTVNGSVCN 177

Query: 570  APQTKVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGEKETKSVISLFDDYLKS 749
             PQT+VDPARD+IYVNGNRLPKKLPPKVYLALNKPKGYICSSGEKE+KSV+ LFDDYLKS
Sbjct: 178  TPQTRVDPARDMIYVNGNRLPKKLPPKVYLALNKPKGYICSSGEKESKSVLCLFDDYLKS 237

Query: 750  WDKRNAGQPKPRLFTVGRLDVATSGLIIVTNDGEFAQQISHPSSSLSKEYIATIDGTVNK 929
            W+K+N G PKPR+FTVGRLDVAT+GLII+TNDG+FAQ++SHPSS LSKEYIATIDG VNK
Sbjct: 238  WNKQNPGVPKPRIFTVGRLDVATTGLIILTNDGDFAQKLSHPSSKLSKEYIATIDGVVNK 297

Query: 930  RHLVTISEGTVIDGVQCTPDAVELLPQQPDISRVRIRIVVHEGRNHEVRELVKNAGLNIY 1109
            RHL+ ISEGTVI+GV CTPD+VELLP QP+IS+ R+R+VVHEGRNHEVRELVK+AGL I+
Sbjct: 298  RHLIAISEGTVIEGVHCTPDSVELLPPQPNISKPRLRVVVHEGRNHEVRELVKSAGLQIH 357

Query: 1110 ALKRVRIGAFRLPPDLILGKHMELKQTHLKALGWKS 1217
            +LKR+RIG FRLP DL  GKH+ELKQ  LKALGWKS
Sbjct: 358  SLKRIRIGGFRLPSDLGHGKHVELKQGDLKALGWKS 393


>ref|XP_002311995.1| predicted protein [Populus trichocarpa] gi|222851815|gb|EEE89362.1|
            predicted protein [Populus trichocarpa]
          Length = 397

 Score =  502 bits (1293), Expect = e-139
 Identities = 266/402 (66%), Positives = 298/402 (74%), Gaps = 7/402 (1%)
 Frame = +3

Query: 30   MAVSLSYAVLSTSLHHLSRPVFLKPRYLRTLIXXXXXXXXXXXXNFNITFAXXXXXXXXX 209
            MA SLS    +  LHH  +  F +   L  L              FNITFA         
Sbjct: 1    MAASLS----TLHLHH--QLTFFRKPSLSLLNKSIRPTRITASLEFNITFAPPKPKPKLP 54

Query: 210  XNQHSSPEDFAQ---QLYIPWIVRDENGNLTLQSSPPARLLHAISDAKTGSPVSXXXXXX 380
             N  +     +    QL+IPWIVR E+GNL LQS+PPARL+HAI+DAKT           
Sbjct: 55   ANLQTDAASLSLPPGQLFIPWIVRGEDGNLKLQSNPPARLIHAIADAKTQPKKKKDKVKK 114

Query: 381  XQEG----LSTPEPKHSKAARRFYNDNFRDPPQRLSKVLAAAGVASRRSSEQLVFQGKVT 548
               G        EP  SKAARRFYN+NFRD  QRLSKVLAAAGVASRRSSE L+F+GKVT
Sbjct: 115  ESSGNVKAKLEAEPTRSKAARRFYNENFRDQAQRLSKVLAAAGVASRRSSEALIFEGKVT 174

Query: 549  VNGSVCNAPQTKVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGEKETKSVISL 728
            VNGSVCN PQT+VDP RD IYVNGNRLPKKLPPK+Y+ALNKPKGYICS GEKE+KSV+ L
Sbjct: 175  VNGSVCNTPQTRVDPGRDSIYVNGNRLPKKLPPKIYIALNKPKGYICSLGEKESKSVMCL 234

Query: 729  FDDYLKSWDKRNAGQPKPRLFTVGRLDVATSGLIIVTNDGEFAQQISHPSSSLSKEYIAT 908
             DDY +SWDKRN G PKPRLFTVGRLDVAT+GLIIVTNDG+FAQQI+HPSS+LSKEYIAT
Sbjct: 235  LDDYFQSWDKRNPGLPKPRLFTVGRLDVATTGLIIVTNDGDFAQQIAHPSSNLSKEYIAT 294

Query: 909  IDGTVNKRHLVTISEGTVIDGVQCTPDAVELLPQQPDISRVRIRIVVHEGRNHEVRELVK 1088
            +DG V+KRHL  +SEGTVI+GV+C PD+VELLPQQPD  R R+RIVVHEGRNHEVRELVK
Sbjct: 295  VDGVVSKRHLFAVSEGTVIEGVRCVPDSVELLPQQPDRPRPRLRIVVHEGRNHEVRELVK 354

Query: 1089 NAGLNIYALKRVRIGAFRLPPDLILGKHMELKQTHLKALGWK 1214
            NAGL I++LKRVRIG FRLP DL LGKH ELKQT LK LGWK
Sbjct: 355  NAGLEIHSLKRVRIGGFRLPSDLGLGKHAELKQTDLKTLGWK 396


>ref|XP_004140075.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
            [Cucumis sativus] gi|449490423|ref|XP_004158601.1|
            PREDICTED: uncharacterized RNA pseudouridine synthase
            aq_1464-like [Cucumis sativus]
          Length = 398

 Score =  497 bits (1279), Expect = e-138
 Identities = 258/365 (70%), Positives = 290/365 (79%), Gaps = 14/365 (3%)
 Frame = +3

Query: 165  FNITFAXXXXXXXXXXNQHSSPEDFAQ-----QLYIPWIVRDENGNLTLQSSPPARLLHA 329
            FNITFA          ++   P  F       QL+IPWIVR E+GNL LQS PP R LH+
Sbjct: 50   FNITFAPPKPKPK---SEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTRFLHS 106

Query: 330  ISDAKT---------GSPVSXXXXXXXQEGLSTPEPKHSKAARRFYNDNFRDPPQRLSKV 482
            +S+ +T         G P+             T  PKHSKAARRFYN+N R+  QRLSKV
Sbjct: 107  VSEDETKPKKKKVSAGKPI-------------TEPPKHSKAARRFYNENIRESSQRLSKV 153

Query: 483  LAAAGVASRRSSEQLVFQGKVTVNGSVCNAPQTKVDPARDIIYVNGNRLPKKLPPKVYLA 662
            LAAAGVASRRSSE+L+F G+VTVNGSVCN PQT+VDPARDIIYVNGNRLPKKLPPKVYLA
Sbjct: 154  LAAAGVASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLA 213

Query: 663  LNKPKGYICSSGEKETKSVISLFDDYLKSWDKRNAGQPKPRLFTVGRLDVATSGLIIVTN 842
            LNKPKGYICSSG+KE+KSVISLFDDYLKSWDK   GQPKPRLFTVGRLDVAT+GLIIVTN
Sbjct: 214  LNKPKGYICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTN 273

Query: 843  DGEFAQQISHPSSSLSKEYIATIDGTVNKRHLVTISEGTVIDGVQCTPDAVELLPQQPDI 1022
            DG+FAQ ISHPSS LSKEYIA IDGTV+K++L+ ISEGT+IDGV CTPD+VELLP+QPDI
Sbjct: 274  DGDFAQGISHPSSGLSKEYIAAIDGTVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPDI 333

Query: 1023 SRVRIRIVVHEGRNHEVRELVKNAGLNIYALKRVRIGAFRLPPDLILGKHMELKQTHLKA 1202
            S+ R+RIVVHEGRNHEVRELVK AGL IY+LKRVRIG FRLP DL LG + ELKQ+ LKA
Sbjct: 334  SKSRLRIVVHEGRNHEVRELVKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSELKA 393

Query: 1203 LGWKS 1217
            +GWKS
Sbjct: 394  IGWKS 398


>ref|XP_002879786.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
            lyrata] gi|297325625|gb|EFH56045.1| pseudouridine
            synthase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 412

 Score =  483 bits (1243), Expect = e-134
 Identities = 239/343 (69%), Positives = 282/343 (82%), Gaps = 18/343 (5%)
 Frame = +3

Query: 243  QQLYIPWIVRDENGNLTLQSSPPARLLHAIS-DAKTGSPVSXXXXXXXQE---------- 389
            QQL+IPWIVR ++G L LQS PPARL+H ++ DA T +P         Q           
Sbjct: 70   QQLFIPWIVRGDDGTLKLQSQPPARLIHNLAIDATTQNPKKKDKPKKKQPQATSSSASAT 129

Query: 390  -GLSTP------EPKHSKAARRFYNDNFRDPPQRLSKVLAAAGVASRRSSEQLVFQGKVT 548
               S+P      +PK SKAARRFYN+NF++PPQRLSKVLAAAGVASRR+SE+L+F GKVT
Sbjct: 130  ASASSPASHSEVKPKLSKAARRFYNENFKEPPQRLSKVLAAAGVASRRTSEELIFDGKVT 189

Query: 549  VNGSVCNAPQTKVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGEKETKSVISL 728
            VNG +CN PQT+VDP+RDIIYVNGNR+PKKLPPKVY ALNKPKGYICSSGEKE KSVISL
Sbjct: 190  VNGILCNTPQTRVDPSRDIIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEIKSVISL 249

Query: 729  FDDYLKSWDKRNAGQPKPRLFTVGRLDVATSGLIIVTNDGEFAQQISHPSSSLSKEYIAT 908
            FD+YL SWDKRN G PKPRLFTVGRLDVAT+GLI+VTNDG+FAQ++SHPSSSL KEYI T
Sbjct: 250  FDEYLSSWDKRNPGTPKPRLFTVGRLDVATTGLIVVTNDGDFAQKLSHPSSSLPKEYITT 309

Query: 909  IDGTVNKRHLVTISEGTVIDGVQCTPDAVELLPQQPDISRVRIRIVVHEGRNHEVRELVK 1088
            + G ++KRHL+ ISEGT+++GV C PD+VEL+P+Q DI R R+RIVVHEGRNHEVRELVK
Sbjct: 310  VVGDIHKRHLMAISEGTIVEGVHCVPDSVELMPKQHDIPRARLRIVVHEGRNHEVRELVK 369

Query: 1089 NAGLNIYALKRVRIGAFRLPPDLILGKHMELKQTHLKALGWKS 1217
            NAGL +++LKRVRIG FRLP DL LGKH+ELKQ+ LKA+GWK+
Sbjct: 370  NAGLEVHSLKRVRIGGFRLPSDLGLGKHVELKQSELKAMGWKN 412


>ref|NP_181447.2| suppressor of variegation1 causing pseudouridine synthase-like
            protein [Arabidopsis thaliana] gi|21617894|gb|AAM66944.1|
            unknown [Arabidopsis thaliana]
            gi|26450440|dbj|BAC42334.1| unknown protein [Arabidopsis
            thaliana] gi|330254545|gb|AEC09639.1| suppressor of
            variegation1 causing pseudouridine synthase-like protein
            [Arabidopsis thaliana]
          Length = 410

 Score =  478 bits (1231), Expect = e-132
 Identities = 236/342 (69%), Positives = 279/342 (81%), Gaps = 17/342 (4%)
 Frame = +3

Query: 243  QQLYIPWIVRDENGNLTLQSSPPARLLHAIS-DAKTGSPVSXXXXXXXQEGLSTP----- 404
            QQL+IPWIVR ++G L LQS PPARL+H ++ DA T +P         Q   ++      
Sbjct: 69   QQLFIPWIVRSDDGTLKLQSQPPARLIHNLAIDATTQNPKKKDKSKKKQPQATSSSSATT 128

Query: 405  -----------EPKHSKAARRFYNDNFRDPPQRLSKVLAAAGVASRRSSEQLVFQGKVTV 551
                       +PK SKAARRFYN+NF++ PQRLSKVLAAAGVASRR+SE+L+F GKVTV
Sbjct: 129  TASSPASHSEVKPKLSKAARRFYNENFKEQPQRLSKVLAAAGVASRRTSEELIFDGKVTV 188

Query: 552  NGSVCNAPQTKVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGEKETKSVISLF 731
            NG +CN PQT+VDP+RDIIYVNGNR+PKKLPPKVY ALNKPKGYICSSGEKE KS ISLF
Sbjct: 189  NGILCNTPQTRVDPSRDIIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEIKSAISLF 248

Query: 732  DDYLKSWDKRNAGQPKPRLFTVGRLDVATSGLIIVTNDGEFAQQISHPSSSLSKEYIATI 911
            D+YL SWDKRN G PKPRLFTVGRLDVAT+GLI+VTNDG+FAQ++SHPSSSL KEYI T+
Sbjct: 249  DEYLSSWDKRNPGTPKPRLFTVGRLDVATTGLIVVTNDGDFAQKLSHPSSSLPKEYITTV 308

Query: 912  DGTVNKRHLVTISEGTVIDGVQCTPDAVELLPQQPDISRVRIRIVVHEGRNHEVRELVKN 1091
             G ++KRHL+ ISEGT+++GV C PD+VEL+P+Q DI R R+RIVVHEGRNHEVRELVKN
Sbjct: 309  VGDIHKRHLMAISEGTMVEGVHCVPDSVELMPKQHDIPRARLRIVVHEGRNHEVRELVKN 368

Query: 1092 AGLNIYALKRVRIGAFRLPPDLILGKHMELKQTHLKALGWKS 1217
            AGL +++LKRVRIG FRLP DL LGKH+ELKQ+ LKALGWK+
Sbjct: 369  AGLEVHSLKRVRIGGFRLPSDLGLGKHVELKQSELKALGWKN 410