BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Angelica23_contig00003106
         (1162 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002887748.1| EMB1473 [Arabidopsis lyrata subsp. lyrata] g...   342   1e-91
ref|NP_177984.1| 50S ribosomal protein L13 [Arabidopsis thaliana...   340   4e-91
emb|CBI20115.3| unnamed protein product [Vitis vinifera]              337   3e-90
ref|XP_002285616.1| PREDICTED: 50S ribosomal protein L13, chloro...   335   2e-89
gb|ABK96526.1| unknown [Populus trichocarpa x Populus deltoides]      324   2e-86

>ref|XP_002887748.1| EMB1473 [Arabidopsis lyrata subsp. lyrata]
            gi|297333589|gb|EFH64007.1| EMB1473 [Arabidopsis lyrata
            subsp. lyrata]
          Length = 242

 Score =  342 bits (876), Expect = 1e-91
 Identities = 173/238 (72%), Positives = 196/238 (82%), Gaps = 4/238 (1%)
 Frame = -1

Query: 1090 MAMTCYSTWGVLPSHPSSKSLCNSQKITPFLGFSMS--SKPTFCLIKVNNNKKRATQIRC 917
            M + C S+  +LPS  SS     S++ +PFLGFS++  SKP+   + +  N KR  Q++C
Sbjct: 1    MTVLCSSSTVILPS--SSVKPSGSERKSPFLGFSLTAFSKPSV-RVGIYANSKRGLQVKC 57

Query: 916  QDVDVEEATT--ALIPREQQWMFDATGFKGPDIWNTTWYPKASDHINTEKTWYIVDATDK 743
            +    EE TT  +L+P  Q+WMFD     GPDIWNTTWYPKASDH+NT+K W++VDATDK
Sbjct: 58   E---AEETTTKTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVVDATDK 114

Query: 742  ILGRLASTIAIHIRGKNLETYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPGG 563
            ILGRLASTIA HIRGKNL +YTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPGG
Sbjct: 115  ILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPGG 174

Query: 562  MKVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLP 389
            M VETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP+DLP
Sbjct: 175  MTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPLDLP 232


>ref|NP_177984.1| 50S ribosomal protein L13 [Arabidopsis thaliana]
            gi|75314103|sp|Q9SYL9.1|RK13_ARATH RecName: Full=50S
            ribosomal protein L13, chloroplastic; AltName: Full=CL13;
            AltName: Full=Protein EMBRYO DEFECTIVE 1473; Flags:
            Precursor gi|4836870|gb|AAD30573.1|AC007260_4 50S
            Ribosomal protein L13 [Arabidopsis thaliana]
            gi|13878111|gb|AAK44133.1|AF370318_1 putative ribosomal
            protein L13 [Arabidopsis thaliana]
            gi|7572938|emb|CAA60775.1| ribosomal protein L13
            [Arabidopsis thaliana] gi|17104781|gb|AAL34279.1|
            putative ribosomal protein L13 [Arabidopsis thaliana]
            gi|332198009|gb|AEE36130.1| 50S ribosomal protein L13
            [Arabidopsis thaliana]
          Length = 241

 Score =  340 bits (872), Expect = 4e-91
 Identities = 171/236 (72%), Positives = 194/236 (82%), Gaps = 2/236 (0%)
 Frame = -1

Query: 1090 MAMTCYSTWGVLPSHPSSKSLCNSQKITPFLGFSMS--SKPTFCLIKVNNNKKRATQIRC 917
            MA+ C S+  +L S  SS     S++ +PFLGFS++  SKP+   + +  N KR  Q++C
Sbjct: 1    MAVLCSSSTVILSS--SSVKSSGSERKSPFLGFSLTAISKPSV-RVGIYANSKRGLQVKC 57

Query: 916  QDVDVEEATTALIPREQQWMFDATGFKGPDIWNTTWYPKASDHINTEKTWYIVDATDKIL 737
            +       TT+L+P  Q+WMFD     GPDIWNTTWYPKASDH+NT+K W++VDATDKIL
Sbjct: 58   EAEPT--TTTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVVDATDKIL 115

Query: 736  GRLASTIAIHIRGKNLETYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPGGMK 557
            GRLASTIA HIRGKNL +YTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPGGM 
Sbjct: 116  GRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPGGMT 175

Query: 556  VETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLP 389
            VETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP+DLP
Sbjct: 176  VETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPLDLP 231


>emb|CBI20115.3| unnamed protein product [Vitis vinifera]
          Length = 374

 Score =  337 bits (864), Expect = 3e-90
 Identities = 174/243 (71%), Positives = 198/243 (81%), Gaps = 5/243 (2%)
 Frame = -1

Query: 1102 KQQTMAMTCYSTWGVLPS-HPSSK-SLCNSQKITPFLGFSMSS---KPTFCLIKVNNNKK 938
            +  TMA+T  S+  +LPS  PS K S  + +K TPFLGFS+S+   KP+F         +
Sbjct: 136  ESSTMAITFASSSVMLPSPSPSPKPSFGSLKKTTPFLGFSISAANPKPSF--------PR 187

Query: 937  RATQIRCQDVDVEEATTALIPREQQWMFDATGFKGPDIWNTTWYPKASDHINTEKTWYIV 758
            ++ ++ CQD        A++P +Q+WMF+ +   GPDIWN TWYPKA+DHINTEKTWYIV
Sbjct: 188  QSFRVNCQD------KAAVVPLDQRWMFEQSEVSGPDIWNKTWYPKAADHINTEKTWYIV 241

Query: 757  DATDKILGRLASTIAIHIRGKNLETYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHS 578
            DATDKILGRLASTIAI+IRGKNL TYTPSVDMG+FVIVVNAEKVAVSGKKR QKLYRRHS
Sbjct: 242  DATDKILGRLASTIAIYIRGKNLATYTPSVDMGSFVIVVNAEKVAVSGKKRTQKLYRRHS 301

Query: 577  GRPGGMKVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV 398
            GRPGGMKVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGP HPHEAQKP+
Sbjct: 302  GRPGGMKVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPHHPHEAQKPI 361

Query: 397  DLP 389
            DLP
Sbjct: 362  DLP 364


>ref|XP_002285616.1| PREDICTED: 50S ribosomal protein L13, chloroplastic [Vitis vinifera]
          Length = 235

 Score =  335 bits (858), Expect = 2e-89
 Identities = 173/239 (72%), Positives = 196/239 (82%), Gaps = 5/239 (2%)
 Frame = -1

Query: 1090 MAMTCYSTWGVLPS-HPSSK-SLCNSQKITPFLGFSMSS---KPTFCLIKVNNNKKRATQ 926
            MA+T  S+  +LPS  PS K S  + +K TPFLGFS+S+   KP+F         +++ +
Sbjct: 1    MAITFASSSVMLPSPSPSPKPSFGSLKKTTPFLGFSISAANPKPSF--------PRQSFR 52

Query: 925  IRCQDVDVEEATTALIPREQQWMFDATGFKGPDIWNTTWYPKASDHINTEKTWYIVDATD 746
            + CQD        A++P +Q+WMF+ +   GPDIWN TWYPKA+DHINTEKTWYIVDATD
Sbjct: 53   VNCQD------KAAVVPLDQRWMFEQSEVSGPDIWNKTWYPKAADHINTEKTWYIVDATD 106

Query: 745  KILGRLASTIAIHIRGKNLETYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPG 566
            KILGRLASTIAI+IRGKNL TYTPSVDMG+FVIVVNAEKVAVSGKKR QKLYRRHSGRPG
Sbjct: 107  KILGRLASTIAIYIRGKNLATYTPSVDMGSFVIVVNAEKVAVSGKKRTQKLYRRHSGRPG 166

Query: 565  GMKVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLP 389
            GMKVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGP HPHEAQKP+DLP
Sbjct: 167  GMKVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPHHPHEAQKPIDLP 225


>gb|ABK96526.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 241

 Score =  324 bits (831), Expect = 2e-86
 Identities = 167/238 (70%), Positives = 187/238 (78%), Gaps = 4/238 (1%)
 Frame = -1

Query: 1090 MAMTCYSTWGVLPSHPSSK-SLCNSQKITP---FLGFSMSSKPTFCLIKVNNNKKRATQI 923
            MAM C S+     + PSS  S  N   I+P    +GFS S    F L    +N +R  ++
Sbjct: 1    MAMLCASSSFTTSTKPSSSYSTKNGTSISPSPFVVGFSFSQS-WFSL----SNSRRGFEV 55

Query: 922  RCQDVDVEEATTALIPREQQWMFDATGFKGPDIWNTTWYPKASDHINTEKTWYIVDATDK 743
            RC+  D    T   +P +Q+W+F+ +   GPDIWNTTWYPKA+DHINTEKTWYIVDATDK
Sbjct: 56   RCEKKDKSVVTR--VPLDQRWLFEESEINGPDIWNTTWYPKAADHINTEKTWYIVDATDK 113

Query: 742  ILGRLASTIAIHIRGKNLETYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPGG 563
            ILGRLASTIAI+IRGKNL TYTPSVDMGAFVIVVNAEKVAVSGKKR QKLYRRHSGRPGG
Sbjct: 114  ILGRLASTIAIYIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGG 173

Query: 562  MKVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLP 389
            M VETFDQLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVY GP HPHEAQKP++LP
Sbjct: 174  MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYTGPTHPHEAQKPIELP 231