BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Angelica23_contig00001720
         (1547 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284465.1| PREDICTED: general transcription factor IIH ...   399   e-108
ref|XP_002307429.1| predicted protein [Populus trichocarpa] gi|2...   366   8e-99
ref|XP_004152842.1| PREDICTED: general transcription factor IIH ...   365   1e-98
ref|NP_564050.1| transcription initiation factor TFIIH subunit H...   364   3e-98
ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arab...   362   1e-97

>ref|XP_002284465.1| PREDICTED: general transcription factor IIH subunit 3 [Vitis
            vinifera] gi|302141830|emb|CBI19033.3| unnamed protein
            product [Vitis vinifera]
          Length = 297

 Score =  399 bits (1025), Expect = e-108
 Identities = 203/298 (68%), Positives = 228/298 (76%), Gaps = 9/298 (3%)
 Frame = +3

Query: 210  MTPVSKKLYTDDVSLLVVLIDTNPYFWSTSNQGLPYSKFLSHLVAFXXXXXXXXXXXXXX 389
            M PV  KLY+DDVSLLVVL+DTNP+FWST++  LP+SKFLSH++AF              
Sbjct: 1    MAPVPSKLYSDDVSLLVVLLDTNPFFWSTAS--LPFSKFLSHVLAFLNSILLINQLNQVV 58

Query: 390  XXATGANSCGYIYDSSLAPPNKRAET---------LLQKLEEFVIRDEELSVENLVDGIK 542
              ATG NSC +I+DSS  P N   E          LLQKLEEFV  DE+LS E L  GI 
Sbjct: 59   VIATGCNSCNFIFDSSSVPANPNLENGRMPALCSNLLQKLEEFVTGDEKLSKEVLAAGIG 118

Query: 543  XXXXXXXXXMALCYIQRVFRSGSLHPQPRILCLHGSPDGPGQYVAVMNSIFSAQRSMLPI 722
                     MALCYIQRVFR+G LHPQPRILCL GSPDGP QYVAVMN+IFSAQRSM+PI
Sbjct: 119  SSLLSGSLSMALCYIQRVFRTGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPI 178

Query: 723  DSCVIGAQHSAFLQQASHITGGIYSKPQQLDGLFQYLSTLFATDLHSRSFIQLHKSVGVD 902
            DSCVIGAQHSAFLQQAS+ITGG+Y KPQQLDGLFQYLST+FATDLHSR F+QL K  GVD
Sbjct: 179  DSCVIGAQHSAFLQQASYITGGVYLKPQQLDGLFQYLSTVFATDLHSRRFLQLPKPAGVD 238

Query: 903  FRASCFCHKSTIDMGYICSVCLSIFCKPHKKCSTCGSTFGQSQATVSSASNLKRKAAD 1076
            FRASCFCHK+TIDMGYICSVCLSIFCK HKKCSTCGS FGQ+Q+  +SA++ KRK  +
Sbjct: 239  FRASCFCHKNTIDMGYICSVCLSIFCKHHKKCSTCGSVFGQAQSDGNSATDRKRKTPE 296


>ref|XP_002307429.1| predicted protein [Populus trichocarpa] gi|222856878|gb|EEE94425.1|
            predicted protein [Populus trichocarpa]
          Length = 289

 Score =  366 bits (940), Expect = 8e-99
 Identities = 187/288 (64%), Positives = 214/288 (74%), Gaps = 9/288 (3%)
 Frame = +3

Query: 240  DDVSLLVVLIDTNPYFWSTSNQGLPYSKFLSHLVAFXXXXXXXXXXXXXXXXATGANSCG 419
            DDVSL+VVL+DTNP+FW T    L +S+FLSH++AF                A+G N+C 
Sbjct: 2    DDVSLVVVLLDTNPFFW-TPPSSLSFSQFLSHVLAFVNSILLLNQLNQVVVIASGYNTCD 60

Query: 420  YIYDSSLAPPNKRAE---------TLLQKLEEFVIRDEELSVENLVDGIKXXXXXXXXXM 572
            YIYDSS       +E          LLQKLEEF+I+DE+L  E     IK         M
Sbjct: 61   YIYDSSSDASQLGSEDGRMPSLYSNLLQKLEEFMIKDEKLGKEQSQRAIKSSLLSGSLSM 120

Query: 573  ALCYIQRVFRSGSLHPQPRILCLHGSPDGPGQYVAVMNSIFSAQRSMLPIDSCVIGAQHS 752
            ALCYIQRVFRSG LHPQPRILCL GSPDGP QYVAVMN+IFSAQRSM+PIDSC +GA +S
Sbjct: 121  ALCYIQRVFRSGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCYVGAHNS 180

Query: 753  AFLQQASHITGGIYSKPQQLDGLFQYLSTLFATDLHSRSFIQLHKSVGVDFRASCFCHKS 932
            AFLQQAS+ITGG+Y KPQ LDGLFQYL+T+FATDLHSRSFIQL +  GVDFRASCFCHK+
Sbjct: 181  AFLQQASYITGGVYVKPQHLDGLFQYLTTVFATDLHSRSFIQLPRPAGVDFRASCFCHKT 240

Query: 933  TIDMGYICSVCLSIFCKPHKKCSTCGSTFGQSQATVSSASNLKRKAAD 1076
            TIDMGYICSVCLSIFC  HKKCSTCGS FGQ+Q+  SS S+LKRKA +
Sbjct: 241  TIDMGYICSVCLSIFCNHHKKCSTCGSVFGQAQSDTSSTSDLKRKAPE 288


>ref|XP_004152842.1| PREDICTED: general transcription factor IIH subunit 3-like [Cucumis
            sativus]
          Length = 295

 Score =  365 bits (938), Expect = 1e-98
 Identities = 186/297 (62%), Positives = 215/297 (72%), Gaps = 8/297 (2%)
 Frame = +3

Query: 210  MTPVSKKLYTDDVSLLVVLIDTNPYFWSTSNQGLPYSKFLSHLVAFXXXXXXXXXXXXXX 389
            M     KLY DDVSLLVVL+DTNP+FWSTS   LP+SKFLSH++AF              
Sbjct: 1    MASAPSKLYADDVSLLVVLLDTNPFFWSTS--ALPFSKFLSHVLAFLNSILVLNQLNEVV 58

Query: 390  XXATGANSCGYIYDSSLAPPNKRAE--------TLLQKLEEFVIRDEELSVENLVDGIKX 545
               TG  SC Y+Y+SS    +   +         LL+ LEEFVI DE+   E+   G   
Sbjct: 59   VIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMS 118

Query: 546  XXXXXXXXMALCYIQRVFRSGSLHPQPRILCLHGSPDGPGQYVAVMNSIFSAQRSMLPID 725
                    MALCYIQ+VFRSGSLHPQPRILCL GSPDGP QYVA+MN+IFSAQRSM+PID
Sbjct: 119  SLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPID 178

Query: 726  SCVIGAQHSAFLQQASHITGGIYSKPQQLDGLFQYLSTLFATDLHSRSFIQLHKSVGVDF 905
            SC IG+ +SAFLQQAS+ITGG+Y KPQQ+DGLFQYLST+F TDLHSR+F+QL KSVGVDF
Sbjct: 179  SCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDF 238

Query: 906  RASCFCHKSTIDMGYICSVCLSIFCKPHKKCSTCGSTFGQSQATVSSASNLKRKAAD 1076
            RASCFCHK TIDMGY+CSVCLSIFCK HKKCSTCGS FG++   + S S LKRK  +
Sbjct: 239  RASCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDSVSKLKRKTPE 295


>ref|NP_564050.1| transcription initiation factor TFIIH subunit H3 [Arabidopsis
            thaliana] gi|21537277|gb|AAM61618.1| unknown [Arabidopsis
            thaliana] gi|92856638|gb|ABE77412.1| At1g18340
            [Arabidopsis thaliana] gi|332191584|gb|AEE29705.1|
            transcription initiation factor TFIIH subunit H3
            [Arabidopsis thaliana]
          Length = 301

 Score =  364 bits (935), Expect = 3e-98
 Identities = 191/300 (63%), Positives = 222/300 (74%), Gaps = 13/300 (4%)
 Frame = +3

Query: 210  MTPVSKKLYTDDVSLLVVLIDTNPYFWSTSNQGLPYSKFLSHLVAFXXXXXXXXXXXXXX 389
            M  ++ K Y+DDVSLLV+L+DTNP FWST++  + +S+FLSH++AF              
Sbjct: 1    MPAIASKQYSDDVSLLVLLLDTNPLFWSTTS--ITFSQFLSHVLAFLNAVLGLNQLNQVV 58

Query: 390  XXATGANSCGYIYDSSLAPPNKRAET-----------LLQKLEEFVIRDEELSVENLV-D 533
              ATG +SC YIYDSSL   +   E+           LL+KLEEFV +DEELS E +  D
Sbjct: 59   VIATGYSSCDYIYDSSLTSNHGNFESNGTGMPAIFGSLLKKLEEFVTKDEELSKEEVSED 118

Query: 534  GIKXXXXXXXXXMALCYIQRVFRSGSLHPQPRILCLHGSPDGPGQYVAVMNSIFSAQRSM 713
             I          MALCYIQRVFRSG LHPQPRILCL GSPDGP QYVAVMNSIFSAQR M
Sbjct: 119  RIPSCLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLM 178

Query: 714  LPIDSCVIGAQHSAFLQQASHITGGIYSKPQQLDGLFQYLSTLFATDLHSRSFIQLHKSV 893
            +PIDSC IG Q+SAFLQQAS+ITGG++  P+QLDGLFQYL+T+FATDLHSR F+QL K +
Sbjct: 179  VPIDSCYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPI 238

Query: 894  GVDFRASCFCHKSTIDMGYICSVCLSIFCKPHKKCSTCGSTFGQSQA-TVSSASNLKRKA 1070
            GVDFRASCFCHK TIDMGYICSVCLSIFC+ HKKCSTCGS FGQS+    SSAS+ KRKA
Sbjct: 239  GVDFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLDDASSASDKKRKA 298


>ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arabidopsis lyrata subsp.
            lyrata] gi|297338839|gb|EFH69256.1| hypothetical protein
            ARALYDRAFT_472054 [Arabidopsis lyrata subsp. lyrata]
          Length = 301

 Score =  362 bits (930), Expect = 1e-97
 Identities = 191/300 (63%), Positives = 221/300 (73%), Gaps = 13/300 (4%)
 Frame = +3

Query: 210  MTPVSKKLYTDDVSLLVVLIDTNPYFWSTSNQGLPYSKFLSHLVAFXXXXXXXXXXXXXX 389
            M  V  K Y+DDVSLLV+L+DTNP FWST++  + +S+FLSH++AF              
Sbjct: 1    MPSVVSKQYSDDVSLLVLLLDTNPLFWSTTS--ITFSQFLSHVLAFLNAVLGLNQLNQVV 58

Query: 390  XXATGANSCGYIYDSSLAPPNKRAET-----------LLQKLEEFVIRDEELSVENLV-D 533
              ATG +SC YIYDSSL   +   E+           LL+KLE+FV +DEELS E +  D
Sbjct: 59   VIATGYSSCDYIYDSSLTSNHGNLESNGTGMPALFGSLLKKLEDFVTKDEELSREEVSED 118

Query: 534  GIKXXXXXXXXXMALCYIQRVFRSGSLHPQPRILCLHGSPDGPGQYVAVMNSIFSAQRSM 713
             I          MALCYIQRVFRSG LHPQPRILCL GSPDGP QYVAVMNSIFSAQR M
Sbjct: 119  RIPSCLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLM 178

Query: 714  LPIDSCVIGAQHSAFLQQASHITGGIYSKPQQLDGLFQYLSTLFATDLHSRSFIQLHKSV 893
            +PIDSC IG Q+SAFLQQAS+ITGG++  P+QLDGLFQYL+T+FATDLHSRSF+QL K +
Sbjct: 179  VPIDSCYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRSFVQLPKPI 238

Query: 894  GVDFRASCFCHKSTIDMGYICSVCLSIFCKPHKKCSTCGSTFGQSQA-TVSSASNLKRKA 1070
            GVDFRASCFCHK TIDMGYICSVCLSIFC+ HKKCSTCGS FGQS+    SS S+ KRKA
Sbjct: 239  GVDFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLDDASSVSDKKRKA 298