BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Angelica22_contig00046693
         (359 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG09097.1|AC009323_8 Putative retroelement polyprotein [Arab...    77   3e-16
dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis t...    73   1e-15
emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis th...    71   4e-15
gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis tha...    71   1e-14
emb|CAN82526.1| hypothetical protein VITISV_028058 [Vitis vinifera]    66   3e-14

>gb|AAG09097.1|AC009323_8 Putative retroelement polyprotein [Arabidopsis thaliana]
          Length = 1486

 Score = 77.0 bits (188), Expect(2) = 3e-16
 Identities = 37/74 (50%), Positives = 50/74 (67%), Gaps = 3/74 (4%)
 Frame = -2

Query: 280 QLWHLRLGHLPFS*LSHIIP---IKSTKENVSVCQICPAARQTRNSFPVSDIKTSSTFQL 110
           QLWH RLGH P S   H++P   + S+  +   C+IC  A+QTR+ FP+S  KTS  F+L
Sbjct: 505 QLWHQRLGH-PSSKALHLLPFSDVTSSTFDSKTCEICIQAKQTRDPFPLSSNKTSFAFEL 563

Query: 109 LHIDIWGPYRTKSL 68
           +H D+WGPYRT S+
Sbjct: 564 VHCDLWGPYRTTSI 577



 Score = 32.7 bits (73), Expect(2) = 3e-16
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = -3

Query: 69  YRTKSLSGCTQFLTIVDDYSR 7
           YRT S+ G   FLT+VDDYSR
Sbjct: 572 YRTTSICGSRYFLTLVDDYSR 592


>dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1109

 Score = 73.2 bits (178), Expect(2) = 1e-15
 Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 4/86 (4%)
 Frame = -2

Query: 310 STYQSSKEALQLWHLRLGHLPFS*LSHIIP---IKSTKENV-SVCQICPAARQTRNSFPV 143
           + + S K    LWH RLGH     + +++P   + S KE + +VC  C  A+QTR++FP+
Sbjct: 280 AVHTSVKAPFDLWHRRLGHASDK-IVNLLPRELLSSGKEILENVCDTCMRAKQTRDTFPL 338

Query: 142 SDIKTSSTFQLLHIDIWGPYRTKSLS 65
           SD ++  +FQL+H D+WGPYRT S S
Sbjct: 339 SDNRSMDSFQLIHCDVWGPYRTPSYS 364



 Score = 34.7 bits (78), Expect(2) = 1e-15
 Identities = 16/21 (76%), Positives = 16/21 (76%)
 Frame = -3

Query: 69  YRTKSLSGCTQFLTIVDDYSR 7
           YRT S SG   FLTIVDDYSR
Sbjct: 358 YRTPSYSGARYFLTIVDDYSR 378


>emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis thaliana]
           gi|7269049|emb|CAB79159.1| LTR retrotransposon like
           protein [Arabidopsis thaliana]
          Length = 1109

 Score = 71.2 bits (173), Expect(2) = 4e-15
 Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 4/86 (4%)
 Frame = -2

Query: 310 STYQSSKEALQLWHLRLGHLPFS*LSHIIP---IKSTKENV-SVCQICPAARQTRNSFPV 143
           + + S K    LWH RLGH     + +++P   + S KE + +VC  C  A+QTR++FP+
Sbjct: 280 AVHTSVKAPFDLWHRRLGHASDK-IVNLLPRELLSSGKEILENVCDTCMRAKQTRDTFPL 338

Query: 142 SDIKTSSTFQLLHIDIWGPYRTKSLS 65
            D ++  +FQL+H D+WGPYRT S S
Sbjct: 339 RDNRSMDSFQLIHCDVWGPYRTPSYS 364



 Score = 34.7 bits (78), Expect(2) = 4e-15
 Identities = 16/21 (76%), Positives = 16/21 (76%)
 Frame = -3

Query: 69  YRTKSLSGCTQFLTIVDDYSR 7
           YRT S SG   FLTIVDDYSR
Sbjct: 358 YRTPSYSGARYFLTIVDDYSR 378


>gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis thaliana]
          Length = 1468

 Score = 71.2 bits (173), Expect(2) = 1e-14
 Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 4/86 (4%)
 Frame = -2

Query: 310 STYQSSKEALQLWHLRLGHLPFS*LSHIIP---IKSTKENV-SVCQICPAARQTRNSFPV 143
           + + S K    LWH RLGH     + +++P   + S KE + +VC  C  A+QTR++FP+
Sbjct: 504 AVHTSVKAPFDLWHRRLGHASDK-IVNLLPRELLSSGKEILENVCDTCMRAKQTRDTFPL 562

Query: 142 SDIKTSSTFQLLHIDIWGPYRTKSLS 65
           SD ++  +FQL+H D+WGPYR  S S
Sbjct: 563 SDNRSMDSFQLIHCDVWGPYRAPSYS 588



 Score = 32.7 bits (73), Expect(2) = 1e-14
 Identities = 15/21 (71%), Positives = 15/21 (71%)
 Frame = -3

Query: 69  YRTKSLSGCTQFLTIVDDYSR 7
           YR  S SG   FLTIVDDYSR
Sbjct: 582 YRAPSYSGARYFLTIVDDYSR 602


>emb|CAN82526.1| hypothetical protein VITISV_028058 [Vitis vinifera]
          Length = 1125

 Score = 65.9 bits (159), Expect(2) = 3e-14
 Identities = 36/97 (37%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
 Frame = -2

Query: 343 QSTSSIVPFCHSTYQSSKEALQLWHLRLGHLPFS*LS----HIIPIKSTKENVSVCQICP 176
           Q+ S+    C S       +  LWH RLGHL  S L     H++       N   C +C 
Sbjct: 230 QTPSAATTSCRSPSSQVTSSTALWHRRLGHLSSSRLDFMAKHLLNFHFQSNNA--CDVCA 287

Query: 175 AARQTRNSFPVSDIKTSSTFQLLHIDIWGPYRTKSLS 65
            A+Q +  F VS I +   F+L+H DIWGPY+  SLS
Sbjct: 288 LAKQRQLPFSVSSISSVRPFELIHCDIWGPYKIASLS 324



 Score = 37.4 bits (85), Expect(2) = 3e-14
 Identities = 17/23 (73%), Positives = 18/23 (78%)
 Frame = -3

Query: 69  YRTKSLSGCTQFLTIVDDYSRFT 1
           Y+  SLSG   FLTIVDDYSRFT
Sbjct: 318 YKIASLSGAKYFLTIVDDYSRFT 340