BLASTX nr result
ID: Angelica22_contig00042891
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Angelica22_contig00042891
(824 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|72694... 79 3e-27
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 86 7e-25
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00... 77 5e-23
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ... 79 1e-22
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li... 79 1e-22
>emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|7269488|emb|CAB79491.1|
putative protein [Arabidopsis thaliana]
Length = 1141
Score = 78.6 bits (192), Expect(3) = 3e-27
Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Frame = -2
Query: 736 NTPQERRLLWRDLESVRS--LIGNTAWCLSGDFNDCLGPSESSNHANWNAG--MLEFKDA 569
N +R+ LWR++ ++ + + N W L GDFN L P E S H + N + +F++
Sbjct: 105 NEDDKRKELWREITALVASPVTFNRPWILLGDFNQVLHPHEHSRHVSLNVDRRIRDFREC 164
Query: 568 SFQLGVTDLKSSGQKFTWWDSCIRDPLFKKLDRCLVNDYWLHSFPLAHVSIMPRGLSDH 392
++DL G FTWW+ P+ KK+DR LVN+ W + FP + P SDH
Sbjct: 165 LLDAELSDLVYKGSSFTWWNKSKTRPVAKKIDRILVNESWSNLFPSSFGLFGPPDFSDH 223
Score = 66.6 bits (161), Expect(3) = 3e-27
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Frame = -1
Query: 356 KIPKPFRFFKHLIKAPGFMEAVSDAW-NTNIPGDPWLVLTSKIRRVKQAMRTLNA-NTGN 183
K +PF+FF L+K P F+ V D W +TN+ G ++ K++ +K+ ++ + N N
Sbjct: 236 KAKRPFKFFNFLLKNPEFLNLVWDVWYSTNVVGSSMFRVSKKLKALKKPIKDFSRLNYSN 295
Query: 182 LHLKVSMARSELLTFQDNLPDCPSVAQLTEENRLKCNLTAALSEEEIFLKQKSRVSW 12
L + A LL+FQ+ D PS+ E + + EE F +Q+SRV+W
Sbjct: 296 LEKRTEEAHETLLSFQNLTLDNPSLENAAHELEAQRKWQILATAEESFFRQRSRVTW 352
Score = 23.5 bits (49), Expect(3) = 3e-27
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -1
Query: 824 ISNTAQQITCSVQKIASKEKFSVSFVYAFQHSSRKK 717
++ + Q ITC V S+ +S VYA ++K
Sbjct: 76 VAKSLQMITCEVLFPNSRTWIVISVVYAANEDDKRK 111
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 86.3 bits (212), Expect(3) = 7e-25
Identities = 43/122 (35%), Positives = 66/122 (54%), Gaps = 3/122 (2%)
Frame = -2
Query: 721 RRLLWRDLE--SVRSLIGNTAWCLSGDFNDCLGPSESSNHANW-NAGMLEFKDASFQLGV 551
RR LW +LE + + W + GDFN L P ++S + GM EF++ +
Sbjct: 117 RRRLWSELELLAANQTTSDKPWIILGDFNQSLDPVDASTGGSRITRGMEEFRECLLTSNI 176
Query: 550 TDLKSSGQKFTWWDSCIRDPLFKKLDRCLVNDYWLHSFPLAHVSIMPRGLSDHCPLSTSL 371
+DL G +TWW++ +P+ KK+DR LVND WL + PL++ S SDHCP ++
Sbjct: 177 SDLPFRGNHYTWWNNQENNPIAKKIDRILVNDSWLIASPLSYGSFCAMEFSDHCPSCVNI 236
Query: 370 GH 365
+
Sbjct: 237 SN 238
Score = 50.4 bits (119), Expect(3) = 7e-25
Identities = 38/116 (32%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Frame = -1
Query: 347 KPFRFFKHLIKAPGFMEAVSDAWNT-NIPGDPWLVLTSKIRRVKQAMRTLNA-NTGNLHL 174
KPF+ L+ P F+E + W+ G L+ K + +K +RT N + L
Sbjct: 245 KPFKLSNFLMHHPEFIEKIRVTWDRLAYQGSAMFTLSKKSKFLKGTIRTFNREHYSGLEK 304
Query: 173 KVSMARSELLTFQDNLPDCPSVAQLTEENRLKCNLTAALSEEEIFLKQKSRVSWLK 6
+V A L T Q+NL PS E + EE FL QKSRV WLK
Sbjct: 305 RVVQAAQNLKTCQNNLLAAPSSYLAGLEKEAHRSWAELALAEERFLCQKSRVLWLK 360
Score = 23.9 bits (50), Expect(3) = 7e-25
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 824 ISNTAQQITCSVQKIASKEKFSVSFVYA 741
+S + Q I+C+V+ +F V+FVYA
Sbjct: 83 LSKSDQTISCTVKLPHISTEFVVTFVYA 110
>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
thaliana]
Length = 1253
Score = 77.4 bits (189), Expect(2) = 5e-23
Identities = 46/114 (40%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Frame = -2
Query: 721 RRLLWRDLESVR-SLIGN-TAWCLSGDFNDCLGPSESSNHA--NWNAGMLEFKDASFQLG 554
R+ LW +L + SL GN W + GDFN L P+E S N N M F+D F+
Sbjct: 67 RKELWEELLLLSVSLSGNGKPWIMLGDFNQVLCPAEHSQATSLNVNRRMKVFRDCLFEAE 126
Query: 553 VTDLKSSGQKFTWWDSCIRDPLFKKLDRCLVNDYWLHSFPLAHVSIMPRGLSDH 392
+ DL G FTWW+ P+ KKLDR LVN+ W FP A+ SDH
Sbjct: 127 LCDLVFKGNTFTWWNKSATRPVAKKLDRILVNESWCSRFPSAYAVFGEPDFSDH 180
Score = 57.0 bits (136), Expect(2) = 5e-23
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 2/115 (1%)
Frame = -1
Query: 347 KPFRFFKHLIKAPGFMEAVSDAW-NTNIPGDPWLVLTSKIRRVKQAMRTLNA-NTGNLHL 174
+PFRF+ L++ P F+ V + W + N+ G ++ K++ +K +RT + N NL
Sbjct: 196 RPFRFYNFLLQNPDFISLVGELWYSINVVGSSMFKMSKKLKALKNPIRTFSMENFSNLEK 255
Query: 173 KVSMARSELLTFQDNLPDCPSVAQLTEENRLKCNLTAALSEEEIFLKQKSRVSWL 9
+V A + +L Q+ P++ E + + EE F Q+SRV+W+
Sbjct: 256 RVKEAHNLVLYRQNKTLSDPTIPNAALEMEAQRKWLILVKAEESFFCQRSRVTWM 310
>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 79.3 bits (194), Expect(3) = 1e-22
Identities = 45/135 (33%), Positives = 66/135 (48%), Gaps = 2/135 (1%)
Frame = -2
Query: 736 NTPQERRLLWRDLE--SVRSLIGNTAWCLSGDFNDCLGPSESSNHANWNAGMLEFKDASF 563
N R+ LW +L ++ ++ +W + GDFN L P ES+ +AN + F+
Sbjct: 113 NEEGTRKELWNELVQLALSPVVVGRSWIVLGDFNQILNP-ESAINANIGRKIRAFRSCLL 171
Query: 562 QLGVTDLKSSGQKFTWWDSCIRDPLFKKLDRCLVNDYWLHSFPLAHVSIMPRGLSDHCPL 383
+ DL G +TWW+ C PL KK+DR LVND+W FP A+ + SDH
Sbjct: 172 DSDLYDLVYKGSSYTWWNKCSSRPLAKKIDRILVNDHWNTLFPSAYANFGEPDFSDHSSC 231
Query: 382 STSLGHAAEKSQSLF 338
L A K++ F
Sbjct: 232 EVVLDPAVLKAKRPF 246
Score = 50.1 bits (118), Expect(3) = 1e-22
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Frame = -1
Query: 356 KIPKPFRFFKHLIKAPGFMEAVSDAW-NTNIPGDPWLVLTSKIRRVKQAMRTLN-ANTGN 183
K +PFRFF + + P F++ + + W + N+ G ++ K++ +K + + N +
Sbjct: 241 KAKRPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLKHLKLPICCFSRENYSD 300
Query: 182 LHLKVSMARSELLTFQDNLPDCPSVAQLTEENRLKCNLTAALSEEEIFLKQKSRVSWL 9
+ +VS A + +L Q PSV T E EE F QKS +SWL
Sbjct: 301 IEKRVSEAHAIVLHRQRITLTNPSVVHATLELEATRKWQILAKAEESFFCQKSSISWL 358
Score = 23.9 bits (50), Expect(3) = 1e-22
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -1
Query: 824 ISNTAQQITCSVQKIASKEKFSVSFVYAFQHSSRKK 717
I + Q ITC + S F VS VYA +K
Sbjct: 84 IGRSLQMITCELLLPDSPSWFVVSIVYASNEEGTRK 119
>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 79.3 bits (194), Expect(3) = 1e-22
Identities = 45/135 (33%), Positives = 66/135 (48%), Gaps = 2/135 (1%)
Frame = -2
Query: 736 NTPQERRLLWRDLE--SVRSLIGNTAWCLSGDFNDCLGPSESSNHANWNAGMLEFKDASF 563
N R+ LW +L ++ ++ +W + GDFN L P ES+ +AN + F+
Sbjct: 113 NEEGTRKELWNELVQLALSPVVVGRSWIVLGDFNQILNP-ESAINANIGRKIRAFRSCLL 171
Query: 562 QLGVTDLKSSGQKFTWWDSCIRDPLFKKLDRCLVNDYWLHSFPLAHVSIMPRGLSDHCPL 383
+ DL G +TWW+ C PL KK+DR LVND+W FP A+ + SDH
Sbjct: 172 DSDLYDLVYKGSSYTWWNKCSSRPLAKKIDRILVNDHWNTLFPSAYANFGEPDFSDHSSC 231
Query: 382 STSLGHAAEKSQSLF 338
L A K++ F
Sbjct: 232 EVVLDPAVLKAKRPF 246
Score = 50.1 bits (118), Expect(3) = 1e-22
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Frame = -1
Query: 356 KIPKPFRFFKHLIKAPGFMEAVSDAW-NTNIPGDPWLVLTSKIRRVKQAMRTLN-ANTGN 183
K +PFRFF + + P F++ + + W + N+ G ++ K++ +K + + N +
Sbjct: 241 KAKRPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLKHLKLPICCFSRENYSD 300
Query: 182 LHLKVSMARSELLTFQDNLPDCPSVAQLTEENRLKCNLTAALSEEEIFLKQKSRVSWL 9
+ +VS A + +L Q PSV T E EE F QKS +SWL
Sbjct: 301 IEKRVSEAHAIVLHRQRITLTNPSVVHATLELEATRKWQILAKAEESFFCQKSSISWL 358
Score = 23.9 bits (50), Expect(3) = 1e-22
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -1
Query: 824 ISNTAQQITCSVQKIASKEKFSVSFVYAFQHSSRKK 717
I + Q ITC + S F VS VYA +K
Sbjct: 84 IGRSLQMITCELLLPDSPSWFVVSIVYASNEEGTRK 119