BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Angelica22_contig00041048
         (1089 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   417   e-114
emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]   412   e-112
ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricin...   409   e-112
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub...   394   e-107
ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocar...   383   e-104

>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Vitis vinifera]
          Length = 1560

 Score =  417 bits (1072), Expect = e-114
 Identities = 224/372 (60%), Positives = 276/372 (74%), Gaps = 10/372 (2%)
 Frame = -1

Query: 1086 RSLSHAQVQELLKGINPKFIEDFVKGKNNLISMNNFPVTPNSHRVNEC------GQQMRF 925
            R LSHAQV  LLK I+P FI++FV   ++   +N  PVTPN+HRV E       GQ + F
Sbjct: 232  RVLSHAQVHYLLKDIDPGFIKEFVSRMDSFF-LNCLPVTPNNHRVTEITHALSNGQTLIF 290

Query: 924  DERTRFYRKLVDFKGSANELSARVLDCLKMSKLKSEKVSAKVTGPQMFIQNEDAAPKMSG 745
            D+ +R Y+KLVDF+G+ANELS RVLDCLK SKL+SEK ++K           D+A KMSG
Sbjct: 291  DQHSRAYKKLVDFRGTANELSCRVLDCLKTSKLRSEKSTSK-----------DSASKMSG 339

Query: 744  LKFIKELILGKRSDHTFRMVVVGDPSIKVDEIGVPCHIAQAMQISEQLNSQNWENL---- 577
            LK+IKE++LGKR++H+FRM+VVGDP +++ EIG+PCHIA+ + ISE LNS NWE +    
Sbjct: 340  LKWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLNSWNWEKVTNGC 399

Query: 576  GLRILTKGETYVRRDGGLVRVTMKDDKLHIGDTIHRPLRDGDIVLINRPPSIHPHSLIAL 397
             LR+L KG+TYVRR G L  V   +D    GD I+RPL DGDIVLINRPPSIH HS+IAL
Sbjct: 400  NLRLLEKGQTYVRRKGTLAPVRRMND-FQAGDIIYRPLTDGDIVLINRPPSIHQHSVIAL 458

Query: 396  SVKILPTKSILSLNPLICSPFRGDFDGDCYHGYVPQSMDSRVELQELVALDKQLIDIQSG 217
            SVK+LP  S++S+NPL CSPFRGDFDGDC HGY+PQS+DSRVEL ELVAL++QLI+ QSG
Sbjct: 459  SVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALNRQLINRQSG 518

Query: 216  QNLLSFTQDTLTAAHLVIEDGVLLNRPQMQQLQMFCPQPRSLQLPAIFKASSCNNYSKAI 37
            +NLLS +QD+L+AAHLV+EDGVLLN  QMQQL+MFCP    LQ PAI KA          
Sbjct: 519  RNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPY--QLQSPAIIKAPLL------- 569

Query: 36   SSNTCWWTGKQL 1
              +T  WTGKQL
Sbjct: 570  --DTQVWTGKQL 579


>emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]
          Length = 1393

 Score =  412 bits (1058), Expect = e-112
 Identities = 224/375 (59%), Positives = 276/375 (73%), Gaps = 13/375 (3%)
 Frame = -1

Query: 1086 RSLSHAQVQELLKGINPKFIEDFVKGKNNLISMNNFPVTPNSHRVNEC------GQQMRF 925
            R LSHAQV  LLK I+P FI++FV   ++   +N  PVTPN+HRV E       GQ + F
Sbjct: 199  RVLSHAQVHYLLKDIDPGFIKEFVSRMDSFF-LNCLPVTPNNHRVTEITHALSNGQTLIF 257

Query: 924  DERTRFYRKLVDFKGSANELSARVLDCLKMSK---LKSEKVSAKVTGPQMFIQNEDAAPK 754
            D+ +R Y+KLVDF+G+ANELS RVLDCLK SK   L+SEK ++K           D+A K
Sbjct: 258  DQHSRAYKKLVDFRGTANELSCRVLDCLKTSKASNLRSEKSTSK-----------DSASK 306

Query: 753  MSGLKFIKELILGKRSDHTFRMVVVGDPSIKVDEIGVPCHIAQAMQISEQLNSQNWENL- 577
            MSGLK+IKE++LGKR++H+FRM+VVGDP +++ EIG+PCHIA+ + ISE LNS NWE + 
Sbjct: 307  MSGLKWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLNSWNWEKVT 366

Query: 576  ---GLRILTKGETYVRRDGGLVRVTMKDDKLHIGDTIHRPLRDGDIVLINRPPSIHPHSL 406
                LR+L KG+TYVRR G L  V   +D    GD I+RPL DGDIVLINRPPSIH HS+
Sbjct: 367  NGCNLRLLEKGQTYVRRKGTLAPVRRMND-FQAGDIIYRPLTDGDIVLINRPPSIHQHSV 425

Query: 405  IALSVKILPTKSILSLNPLICSPFRGDFDGDCYHGYVPQSMDSRVELQELVALDKQLIDI 226
            IALSVK+LP  S++S+NPL CSPFRGDFDGDC HGY+PQS+DSRVEL ELVAL++QLI+ 
Sbjct: 426  IALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALNRQLINR 485

Query: 225  QSGQNLLSFTQDTLTAAHLVIEDGVLLNRPQMQQLQMFCPQPRSLQLPAIFKASSCNNYS 46
            QSG+NLLS +QD+L+AAHLV+EDGVLLN  QMQQL+MFCP    LQ PAI KA       
Sbjct: 486  QSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPY--QLQSPAIIKAPLL---- 539

Query: 45   KAISSNTCWWTGKQL 1
                 +T  WTGKQL
Sbjct: 540  -----DTQVWTGKQL 549


>ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus communis]
            gi|223549595|gb|EEF51083.1| DNA-directed RNA polymerase,
            putative [Ricinus communis]
          Length = 1475

 Score =  409 bits (1052), Expect = e-112
 Identities = 219/373 (58%), Positives = 275/373 (73%), Gaps = 10/373 (2%)
 Frame = -1

Query: 1089 ERSLSHAQVQELLKGINPKFIEDFVKGKNNLISMNNFPVTPNSHRVNEC------GQQMR 928
            +R LSHAQV  LL+ I+P FI  FV  K + I +N F VTPN HRV E       GQ++ 
Sbjct: 193  QRVLSHAQVIHLLENIDPNFIRKFVL-KRDSIFLNCFSVTPNCHRVTEVTHAFSNGQRLV 251

Query: 927  FDERTRFYRKLVDFKGSANELSARVLDCLKMSKLKSEKVSAKVTGPQMFIQNEDAAPKMS 748
            FD+RTR Y+K+VDF+G A ELS RVLDCLK SK+  +K         +  +  D++   S
Sbjct: 252  FDDRTRAYKKMVDFRGIAKELSFRVLDCLKTSKINPDKSVNNDDYMALQRKMNDSSSSSS 311

Query: 747  GLKFIKELILGKRSDHTFRMVVVGDPSIKVDEIGVPCHIAQAMQISEQLNSQNWENLG-- 574
            GL++IK+++LGKR+D++FRMVVVGDP+IK  EIG+PC IA+ +QISE L + NW+ L   
Sbjct: 312  GLRWIKDVVLGKRNDNSFRMVVVGDPNIKFSEIGIPCPIAERLQISEHLTTWNWDKLNTC 371

Query: 573  --LRILTKGETYVRRDGGLVRVTMKDDKLHIGDTIHRPLRDGDIVLINRPPSIHPHSLIA 400
              +R+L KG+ +VRR+G LVRV  +  +L IGD I+RPL DGD VLINRPPSIH HSLIA
Sbjct: 372  CEVRLLEKGDMHVRREGKLVRVR-RTKELRIGDIIYRPLNDGDTVLINRPPSIHQHSLIA 430

Query: 399  LSVKILPTKSILSLNPLICSPFRGDFDGDCYHGYVPQSMDSRVELQELVALDKQLIDIQS 220
            LSVK+LP  S+L++NPLIC+PFRGDFDGDC HGYVPQS+D+RVEL+ELVALDKQLI++Q+
Sbjct: 431  LSVKVLPATSVLAINPLICAPFRGDFDGDCLHGYVPQSVDTRVELRELVALDKQLINVQN 490

Query: 219  GQNLLSFTQDTLTAAHLVIEDGVLLNRPQMQQLQMFCPQPRSLQLPAIFKASSCNNYSKA 40
            G+NLLSF+QD+L AAHLV+EDGVLL+  QMQQLQMFC  P  L  PA+ KA S N     
Sbjct: 491  GRNLLSFSQDSLVAAHLVMEDGVLLSLQQMQQLQMFC--PHQLFSPAVRKAPSLNG---- 544

Query: 39   ISSNTCWWTGKQL 1
                 C WTGKQL
Sbjct: 545  -----CAWTGKQL 552


>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
            sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
            QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Cucumis sativus]
          Length = 1469

 Score =  394 bits (1012), Expect = e-107
 Identities = 214/371 (57%), Positives = 272/371 (73%), Gaps = 11/371 (2%)
 Frame = -1

Query: 1080 LSHAQVQELLKGINPKFIEDFVKGKNNLISMNNFPVTPNSHRVNEC------GQQMRFDE 919
            L+HAQV  LLK I+PKF++ FV   ++L  +N+FPVTPNSHRV E       GQ++ FDE
Sbjct: 201  LTHAQVHYLLKDIDPKFLKKFVPAIDSLF-LNSFPVTPNSHRVTEMAHSFSNGQRLIFDE 259

Query: 918  RTRFYRKLVDFKGSANELSARVLDCLKMSKLKSEKVSAKVTGPQMFIQN-EDAAPKMSGL 742
            RTR Y+K+VDF+G+ANEL +RVLDCLK+SK         +     + +  +D A   SGL
Sbjct: 260  RTRAYKKVVDFRGTANELGSRVLDCLKISKAIYNIFVFCLNHVNYYQKKIKDTATSSSGL 319

Query: 741  KFIKELILGKRSDHTFRMVVVGDPSIKVDEIGVPCHIAQAMQISEQLNSQNWENLG---- 574
            ++IK+++LGKRSDH FRMVVVGDP+I++ EIG+PCH+A+ +QISE L+S N + L     
Sbjct: 320  RWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCY 379

Query: 573  LRILTKGETYVRRDGGLVRVTMKDDKLHIGDTIHRPLRDGDIVLINRPPSIHPHSLIALS 394
            L ++ KGE YVRR+G LVRV    + L++GDTI+RPL DGDIVL+NRPPSIH HSLIALS
Sbjct: 380  LHLVEKGEIYVRREGRLVRVRNVLE-LNMGDTIYRPLADGDIVLVNRPPSIHQHSLIALS 438

Query: 393  VKILPTKSILSLNPLICSPFRGDFDGDCYHGYVPQSMDSRVELQELVALDKQLIDIQSGQ 214
            VK+LP  ++LSLNPL CSPFRGDFDGDC HGYVPQS+++RVE++ELV+LDKQL + QSG+
Sbjct: 439  VKLLPVSAVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDKQLTNGQSGR 498

Query: 213  NLLSFTQDTLTAAHLVIEDGVLLNRPQMQQLQMFCPQPRSLQLPAIFKASSCNNYSKAIS 34
            NLLS + D+LTAAHL++EDGV LN  QMQQLQM       L  PAI K+    N      
Sbjct: 499  NLLSLSHDSLTAAHLILEDGVSLNLFQMQQLQML--TLHQLLPPAIVKSPLLRN------ 550

Query: 33   SNTCWWTGKQL 1
               C WTGKQL
Sbjct: 551  ---CAWTGKQL 558


>ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocarpa]
            gi|222845329|gb|EEE82876.1| RNA polymerase IV subunit
            [Populus trichocarpa]
          Length = 1517

 Score =  383 bits (983), Expect = e-104
 Identities = 207/373 (55%), Positives = 264/373 (70%), Gaps = 11/373 (2%)
 Frame = -1

Query: 1086 RSLSHAQVQELLKGINPKFIEDFVKGKNNLISMNNFPVTPNSHRVNEC------GQQMRF 925
            R LSH+QV+ +LK ++P FI+  +  K + I +N FPVTPNSHRV E       GQ++ F
Sbjct: 227  RVLSHSQVRHMLKDVDPNFIKLSIL-KTDTIFLNCFPVTPNSHRVTEVTHAFSNGQRLIF 285

Query: 924  DERTRFYRKLVDFKGSANELSARVLDCLKMSKLKSEKVSAKVTGPQMFIQNEDAAPKMSG 745
            DERTR Y+K+VDF+G AN LS  V+DCLK SKL  +K            ++ D     SG
Sbjct: 286  DERTRAYKKMVDFRGVANTLSFHVMDCLKTSKLNPDKSGNIDPWTAQPKKSNDYVNNASG 345

Query: 744  LKFIKELILGKRSDHTFRMVVVGDPSIKVDEIGVPCHIAQAMQISEQLNSQNWENLGLRI 565
            L++IK+++LGKR+DH+FRMV+VGDP +++ EIG+PCHIA+ +QISE L + NWE L    
Sbjct: 346  LRWIKDVVLGKRNDHSFRMVIVGDPHLQLHEIGIPCHIAERLQISESLTAWNWEKLNACF 405

Query: 564  ----LTKGETYVRRDGGLVRVT-MKDDKLHIGDTIHRPLRDGDIVLINRPPSIHPHSLIA 400
                  KG+ +VRR+G LVRV  MK+  L +GD I+RPL DGD VLINRPPSIH HSLIA
Sbjct: 406  EKSRFEKGDMHVRREGNLVRVRHMKE--LRLGDIIYRPLNDGDTVLINRPPSIHQHSLIA 463

Query: 399  LSVKILPTKSILSLNPLICSPFRGDFDGDCYHGYVPQSMDSRVELQELVALDKQLIDIQS 220
            LSVK+LP  S+L++NPL C PFR DFDGDC HGYVPQS+D+RVEL ELV+LDKQL + QS
Sbjct: 464  LSVKVLPVPSVLAINPLCCPPFRADFDGDCLHGYVPQSVDTRVELTELVSLDKQLTNWQS 523

Query: 219  GQNLLSFTQDTLTAAHLVIEDGVLLNRPQMQQLQMFCPQPRSLQLPAIFKASSCNNYSKA 40
            G+NLLS +QD+LTAAHLV+ED V L+  ++QQLQMF  +P    LPA+          KA
Sbjct: 524  GRNLLSLSQDSLTAAHLVLEDDVFLSSFELQQLQMF--RPERFLLPAV----------KA 571

Query: 39   ISSNTCWWTGKQL 1
             S+N   WTGKQL
Sbjct: 572  PSANALVWTGKQL 584