BLASTX nr result

ID: Angelica22_contig00037283 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Angelica22_contig00037283
         (263 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004165711.1| PREDICTED: LOW QUALITY PROTEIN: U5 small nuc...   142   3e-32
ref|XP_004147618.1| PREDICTED: U5 small nuclear ribonucleoprotei...   142   3e-32
ref|XP_003595992.1| U5 small nuclear ribonucleoprotein 200 kDa h...   141   6e-32
ref|XP_003546783.1| PREDICTED: U5 small nuclear ribonucleoprotei...   140   1e-31
ref|XP_002518663.1| U520, putative [Ricinus communis] gi|2235420...   139   2e-31

>ref|XP_004165711.1| PREDICTED: LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein
            200 kDa helicase-like [Cucumis sativus]
          Length = 2175

 Score =  142 bits (358), Expect = 3e-32
 Identities = 66/87 (75%), Positives = 76/87 (87%)
 Frame = +1

Query: 1    GRLARALFEIALKRGWAQVAEKALNLCKIVSKRMWTVQSPLRQFLGFPRDVLMKMEKKDL 180
            GRL RALFEI LKRGWAQ+AEKALNLCK+VSKRMW+VQ+PLRQF G   D+LMK+EKKDL
Sbjct: 1118 GRLMRALFEIVLKRGWAQLAEKALNLCKMVSKRMWSVQTPLRQFHGISNDILMKLEKKDL 1177

Query: 181  AWERYHDLSSHELGEIFRCGRMGKALH 261
            AWERY+DLSS ELGE+ R  +MG+ LH
Sbjct: 1178 AWERYYDLSSQELGELIRAPKMGRTLH 1204


>ref|XP_004147618.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like
            [Cucumis sativus]
          Length = 2175

 Score =  142 bits (358), Expect = 3e-32
 Identities = 66/87 (75%), Positives = 76/87 (87%)
 Frame = +1

Query: 1    GRLARALFEIALKRGWAQVAEKALNLCKIVSKRMWTVQSPLRQFLGFPRDVLMKMEKKDL 180
            GRL RALFEI LKRGWAQ+AEKALNLCK+VSKRMW+VQ+PLRQF G   D+LMK+EKKDL
Sbjct: 1118 GRLMRALFEIVLKRGWAQLAEKALNLCKMVSKRMWSVQTPLRQFHGISNDILMKLEKKDL 1177

Query: 181  AWERYHDLSSHELGEIFRCGRMGKALH 261
            AWERY+DLSS ELGE+ R  +MG+ LH
Sbjct: 1178 AWERYYDLSSQELGELIRAPKMGRTLH 1204


>ref|XP_003595992.1| U5 small nuclear ribonucleoprotein 200 kDa helicase [Medicago
            truncatula] gi|355485040|gb|AES66243.1| U5 small nuclear
            ribonucleoprotein 200 kDa helicase [Medicago truncatula]
          Length = 2223

 Score =  141 bits (355), Expect = 6e-32
 Identities = 65/87 (74%), Positives = 76/87 (87%)
 Frame = +1

Query: 1    GRLARALFEIALKRGWAQVAEKALNLCKIVSKRMWTVQSPLRQFLGFPRDVLMKMEKKDL 180
            GRL RALFEI LKRGWAQ+AEKALNLCK+V+KRMW+VQ+PLRQF G P DVL K+EKKDL
Sbjct: 1170 GRLLRALFEIVLKRGWAQLAEKALNLCKMVTKRMWSVQTPLRQFNGIPSDVLTKLEKKDL 1229

Query: 181  AWERYHDLSSHELGEIFRCGRMGKALH 261
            AWERY+DLSS E+GE+ R  +MG+ LH
Sbjct: 1230 AWERYYDLSSQEIGELIRAPKMGRTLH 1256


>ref|XP_003546783.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like
            [Glycine max]
          Length = 2183

 Score =  140 bits (352), Expect = 1e-31
 Identities = 64/87 (73%), Positives = 76/87 (87%)
 Frame = +1

Query: 1    GRLARALFEIALKRGWAQVAEKALNLCKIVSKRMWTVQSPLRQFLGFPRDVLMKMEKKDL 180
            GRL RALFEI LKRGWAQ+AEKALNLCK+V+KRMW+VQ+PLRQF G P D+L K+EKKDL
Sbjct: 1125 GRLLRALFEIVLKRGWAQLAEKALNLCKMVTKRMWSVQTPLRQFNGIPSDLLTKLEKKDL 1184

Query: 181  AWERYHDLSSHELGEIFRCGRMGKALH 261
            AWERY+DLSS E+GE+ R  +MG+ LH
Sbjct: 1185 AWERYYDLSSQEIGELIRAPKMGRTLH 1211


>ref|XP_002518663.1| U520, putative [Ricinus communis] gi|223542044|gb|EEF43588.1| U520,
            putative [Ricinus communis]
          Length = 1809

 Score =  139 bits (350), Expect = 2e-31
 Identities = 62/87 (71%), Positives = 76/87 (87%)
 Frame = +1

Query: 1    GRLARALFEIALKRGWAQVAEKALNLCKIVSKRMWTVQSPLRQFLGFPRDVLMKMEKKDL 180
            GRL RALFEI LKRGWAQ+ EKALNLCK+++KRMW+VQ+PLRQF G P ++LMK+EKKDL
Sbjct: 753  GRLLRALFEIVLKRGWAQLTEKALNLCKMINKRMWSVQTPLRQFNGIPNEILMKLEKKDL 812

Query: 181  AWERYHDLSSHELGEIFRCGRMGKALH 261
            AWERY+DLSS E+GE+ R  +MG+ LH
Sbjct: 813  AWERYYDLSSQEIGELIRFPKMGRTLH 839


Top